BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10767
(149 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 55.8 bits (133), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 74/146 (50%), Gaps = 20/146 (13%)
Query: 16 VTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVR---------DIGYMPQVGLM 66
VTA L+GPSG GK+T+LS ++ G+ISL +R IG + Q ++
Sbjct: 403 VTA--LVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPIL 460
Query: 67 RSGALLAE-----DSPSYLL--EYYNCSTLEDVFLYLCEQDQILFSLVGSESAF--GGQQ 117
S ++ D PS + E + + + ++ Q ++VG + GGQ+
Sbjct: 461 FSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQK 520
Query: 118 RRVSFAVSLIHDPKILILDEPTVGLD 143
+R++ A +L+ +PKIL+LDE T LD
Sbjct: 521 QRIAIARALLKNPKILLLDEATSALD 546
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 55.8 bits (133), Expect = 8e-09, Method: Composition-based stats.
Identities = 38/147 (25%), Positives = 69/147 (46%), Gaps = 31/147 (21%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAEDSPSY 79
L+G SGCGK+T++S ++ + G I++ VRDI + +R + P+
Sbjct: 448 ALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDI----NLEFLRKNVAVVSQEPA- 502
Query: 80 LLEYYNCSTLEDVFL---YLCEQDQILFSLVGSESAF--------------------GGQ 116
+NC+ E++ L + ++ + + + F GGQ
Sbjct: 503 ---LFNCTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQ 559
Query: 117 QRRVSFAVSLIHDPKILILDEPTVGLD 143
++R++ A +L+ +PKIL+LDE T LD
Sbjct: 560 KQRIAIARALVRNPKILLLDEATSALD 586
Score = 46.6 bits (109), Expect = 6e-06, Method: Composition-based stats.
Identities = 36/141 (25%), Positives = 67/141 (47%), Gaps = 17/141 (12%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIG---YMPQVGLMRSGALL---- 72
L+GPSGCGK+T+++ + G I + ++ + Q+ ++ L
Sbjct: 1109 ALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCS 1168
Query: 73 -AED-------SPSYLLEYYNCSTLEDVFLYLCEQDQILFSLVGSESA--FGGQQRRVSF 122
AE+ S + + + L ++ ++ E + + VG GGQ++R++
Sbjct: 1169 IAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAI 1228
Query: 123 AVSLIHDPKILILDEPTVGLD 143
A +L+ +PKIL+LDE T LD
Sbjct: 1229 ARALVRNPKILLLDEATSALD 1249
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 55.8 bits (133), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 71/142 (50%), Gaps = 18/142 (12%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRD---------IGYMPQVGLMRSGA 70
L+GPSG GK+T+LS ++ G+ISL +R IG + Q ++ S +
Sbjct: 374 ALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCS 433
Query: 71 LLAE-----DSPSYLL--EYYNCSTLEDVFLYLCEQDQILFSLVGSESAF--GGQQRRVS 121
+ D PS + E + + + ++ Q ++VG + GGQ++R++
Sbjct: 434 IAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIA 493
Query: 122 FAVSLIHDPKILILDEPTVGLD 143
A +L+ +PKIL+LDE T LD
Sbjct: 494 IARALLKNPKILLLDEATSALD 515
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 52.8 bits (125), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 75/168 (44%), Gaps = 33/168 (19%)
Query: 7 SSLNTVIFGVTA---YGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQV 63
+LN V V A YG++G SG GK+TL+ C+ R GS+ + + +
Sbjct: 19 QALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQEL--------T 70
Query: 64 GLMRSGALLAEDSPSYLLEYYNCSTLEDVF--------LYLCEQDQI------LFSLVG- 108
L S A + +++N + VF L +D++ L SLVG
Sbjct: 71 TLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGL 130
Query: 109 -------SESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLSFS 149
+ GGQ++RV+ A +L +PK+L+ DE T LDP + S
Sbjct: 131 GDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRS 178
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 52.8 bits (125), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 66/140 (47%), Gaps = 16/140 (11%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRD---IGYMPQVGLMRSGALLAEDS 76
L+G SG GK+T+ S I +D G I + +R+ QV L+ L D+
Sbjct: 373 ALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDT 432
Query: 77 PSYLLEY-----YNCSTLEDV------FLYLCEQDQILFSLVGSESAF--GGQQRRVSFA 123
+ + Y Y+ +E+ ++ + D L +++G GGQ++R++ A
Sbjct: 433 VANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIA 492
Query: 124 VSLIHDPKILILDEPTVGLD 143
+L+ D ILILDE T LD
Sbjct: 493 RALLRDSPILILDEATSALD 512
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 52.8 bits (125), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 73/158 (46%), Gaps = 17/158 (10%)
Query: 3 DVSA-SSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRD---IG 58
DV A ++N I L+G SG GK+T+ S I +D G I + +R+
Sbjct: 355 DVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGEILMDGHDLREYTLAS 414
Query: 59 YMPQVGLMRSGALLAEDSPSYLLEY-----YNCSTLEDV------FLYLCEQDQILFSLV 107
QV L+ L D+ + + Y Y+ +E+ ++ + D L +++
Sbjct: 415 LRNQVALVSQNVHLFNDTVANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVI 474
Query: 108 GSESAF--GGQQRRVSFAVSLIHDPKILILDEPTVGLD 143
G GGQ++R++ A +L+ D ILILDE T LD
Sbjct: 475 GENGVLLSGGQRQRIAIARALLRDSPILILDEATSALD 512
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 75/168 (44%), Gaps = 33/168 (19%)
Query: 7 SSLNTVIFGVTA---YGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQV 63
+LN V V A YG++G SG GK+TL+ C+ R GS+ + + +
Sbjct: 42 QALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQEL--------T 93
Query: 64 GLMRSGALLAEDSPSYLLEYYNCSTLEDVF--------LYLCEQDQI------LFSLVG- 108
L S A + +++N + VF L +D++ L SLVG
Sbjct: 94 TLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGL 153
Query: 109 -------SESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLSFS 149
+ GGQ++RV+ A +L +PK+L+ D+ T LDP + S
Sbjct: 154 GDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRS 201
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 68/144 (47%), Gaps = 30/144 (20%)
Query: 19 YGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV-------RDIGYM-------PQVG 64
+ +LGP+G GKT L I D G I L + V DI ++ P +
Sbjct: 29 FVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMN 88
Query: 65 LMRS---GALLAE-DSPSYLLEYYNCSTLEDVFLYLCEQDQILFSLVGSESAFGGQQRRV 120
+ ++ G + + P +L+ +E +L +++ + S GG+Q+RV
Sbjct: 89 VKKNLEFGMRMKKIKDPKRVLDTARDLKIE----HLLDRNPLTLS--------GGEQQRV 136
Query: 121 SFAVSLIHDPKILILDEPTVGLDP 144
+ A +L+ +PKIL+LDEP LDP
Sbjct: 137 ALARALVTNPKILLLDEPLSALDP 160
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 75/168 (44%), Gaps = 33/168 (19%)
Query: 7 SSLNTVIFGVTA---YGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQV 63
+LN V V A YG++G SG GK+TL+ C+ R GS+ + + +
Sbjct: 42 QALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQEL--------T 93
Query: 64 GLMRSGALLAEDSPSYLLEYYNCSTLEDVF--------LYLCEQDQI------LFSLVG- 108
L S A + +++N + VF L +D++ L SLVG
Sbjct: 94 TLSESELTKARRQIGXIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGL 153
Query: 109 -------SESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLSFS 149
+ GGQ++RV+ A +L +PK+L+ D+ T LDP + S
Sbjct: 154 GDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRS 201
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 64/139 (46%), Gaps = 21/139 (15%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQ---VGLMRSGALLAEDS 76
GLLGPSG GKTT+L I R G + + + V D+ PQ VGL+ L +
Sbjct: 45 GLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDL--PPQKRNVGLVFQNYALFQ-- 100
Query: 77 PSYLLEYYNCS-TLEDVFLYLCEQDQILFSLVG-----------SESAFGGQQRRVSFAV 124
++ Y N S L + + E D + L+ GGQQ+RV+ A
Sbjct: 101 --HMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALAR 158
Query: 125 SLIHDPKILILDEPTVGLD 143
+L P++L+ DEP +D
Sbjct: 159 ALAPRPQVLLFDEPFAAID 177
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 50.1 bits (118), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 75/158 (47%), Gaps = 22/158 (13%)
Query: 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIV-------------NRLRLDHGSISLS 50
V+ ++N I +G+LGPSG GKTT + I +RL +G + +
Sbjct: 19 VALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVP 78
Query: 51 ARTVRDIGYMPQVGLMRSGALLAEDSPSYLLEYYNCSTLEDVFLYLCEQDQIL-----FS 105
R IG + Q + L A ++ ++ L S E++ + E +IL +
Sbjct: 79 PED-RKIGMVFQTWALYPN-LTAFENIAFPLTNMKMSK-EEIRKRVEEVAKILDIHHVLN 135
Query: 106 LVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLD 143
E + GGQQ+RV+ A +L+ DP +L+LDEP LD
Sbjct: 136 HFPRELS-GGQQQRVALARALVKDPSLLLLDEPFSNLD 172
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 50.1 bits (118), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 62/143 (43%), Gaps = 22/143 (15%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAEDSPSYL 80
L+G +G GKTT LS I +R G I + + DI P + R G L +
Sbjct: 37 LIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQ---DITNKPAHVINRXGIALVPEGRRIF 93
Query: 81 LE---YYNCST--------------LEDVFLYLCEQDQILFSLVGSESAFGGQQRRVSFA 123
E Y N LE +F + L L G+ S GG+Q+ ++
Sbjct: 94 PELTVYENLXXGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLS--GGEQQXLAIG 151
Query: 124 VSLIHDPKILILDEPTVGLDPVL 146
+L PK+L DEP++GL P+L
Sbjct: 152 RALXSRPKLLXXDEPSLGLAPIL 174
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 49.3 bits (116), Expect = 8e-07, Method: Composition-based stats.
Identities = 41/142 (28%), Positives = 70/142 (49%), Gaps = 17/142 (11%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSIS---LSARTVR------DIGYMPQVGLMRSGA 70
+LG +G GK+TL++ I + + G + L RTV+ I +PQ ++ SG
Sbjct: 373 AVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGT 432
Query: 71 LLA------EDSPS-YLLEYYNCSTLEDVFLYLCEQDQILFSLVGSESAFGGQQRRVSFA 123
+ ED+ ++E + + D + L E G + GGQ++R+S A
Sbjct: 433 IKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVER-GGRNFSGGQKQRLSIA 491
Query: 124 VSLIHDPKILILDEPTVGLDPV 145
+L+ PK+LILD+ T +DP+
Sbjct: 492 RALVKKPKVLILDDCTSSVDPI 513
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 60/143 (41%), Gaps = 29/143 (20%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIG-YMPQVGLMRSGALLAEDSPS 78
LLGPSGCGKTT L + + G I V DI +VG++ L
Sbjct: 33 ALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVFQNYAL------ 86
Query: 79 YLLEYYNCSTLEDVFLYL----CEQDQILFSLVGSESAF--------------GGQQRRV 120
Y + + E++ L +D++ +V GGQQ+RV
Sbjct: 87 ----YPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRV 142
Query: 121 SFAVSLIHDPKILILDEPTVGLD 143
+ A +L+ PK+L+ DEP LD
Sbjct: 143 ALARALVKQPKVLLFDEPLSNLD 165
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 67/146 (45%), Gaps = 23/146 (15%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV-------RDIGYM-------PQVGL 65
LLGPSG GK+TLL I + G I + V R++G + P + +
Sbjct: 33 ALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHMTV 92
Query: 66 MRSGALLAE--DSPSYLLEYYNCSTLEDVFLYLCEQDQILFSLVGSESAFGGQQRRVSFA 123
++ A E +P E + E + D++L S GGQQ+RV+ A
Sbjct: 93 YKNIAFPLELRKAPR---EEIDKKVRE--VAKMLHIDKLLNRYPWQLS--GGQQQRVAIA 145
Query: 124 VSLIHDPKILILDEPTVGLDPVLSFS 149
+L+ +P++L+LDEP LD +L
Sbjct: 146 RALVKEPEVLLLDEPLSNLDALLRLE 171
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 74/158 (46%), Gaps = 22/158 (13%)
Query: 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIV-------------NRLRLDHGSISLS 50
V+ ++N I +G+LGPSG GKTT + I +RL +G + +
Sbjct: 19 VALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVP 78
Query: 51 ARTVRDIGYMPQVGLMRSGALLAEDSPSYLLEYYNCSTLEDVFLYLCEQDQIL-----FS 105
R IG + Q + L A ++ ++ L S E++ + E +IL +
Sbjct: 79 PED-RKIGMVFQTWALYPN-LTAFENIAFPLTNMKMSK-EEIRKRVEEVAKILDIHHVLN 135
Query: 106 LVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLD 143
E + G QQ+RV+ A +L+ DP +L+LDEP LD
Sbjct: 136 HFPRELS-GAQQQRVALARALVKDPSLLLLDEPFSNLD 172
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 62/140 (44%), Gaps = 16/140 (11%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRD---IGYMPQVGLMRSGALLAEDS 76
L+G SG GK+T+ + +D GSI L VRD L+ L D+
Sbjct: 373 ALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDT 432
Query: 77 PSYLLEY-----YNCSTLEDV------FLYLCEQDQILFSLVGSE--SAFGGQQRRVSFA 123
+ + Y Y +E ++ Q L +++G S GGQ++RV+ A
Sbjct: 433 IANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIA 492
Query: 124 VSLIHDPKILILDEPTVGLD 143
+L+ D +LILDE T LD
Sbjct: 493 RALLRDAPVLILDEATSALD 512
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 47.8 bits (112), Expect = 2e-06, Method: Composition-based stats.
Identities = 45/152 (29%), Positives = 79/152 (51%), Gaps = 19/152 (12%)
Query: 9 LNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLR--LDHGSISLSARTVRDIG--YMPQV- 63
LN + L+G SGCGK+T + ++ RL LD G +S+ + +R I Y+ ++
Sbjct: 409 LNLKVKSGQTVALVGNSGCGKSTTVQ-LMQRLYDPLD-GMVSIDGQDIRTINVRYLREII 466
Query: 64 GLMRSGALLAEDSPSYLLEY-YNCSTLEDVFLYLCEQDQILF---------SLVGSESA- 112
G++ +L + + + Y T++++ + E + F +LVG A
Sbjct: 467 GVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQ 526
Query: 113 -FGGQQRRVSFAVSLIHDPKILILDEPTVGLD 143
GGQ++R++ A +L+ +PKIL+LDE T LD
Sbjct: 527 LSGGQKQRIAIARALVRNPKILLLDEATSALD 558
Score = 45.1 bits (105), Expect = 2e-05, Method: Composition-based stats.
Identities = 39/141 (27%), Positives = 70/141 (49%), Gaps = 17/141 (12%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYM---PQVGLMRSGALLAEDS 76
L+G SGCGK+T++ + GS+ L + ++ + Q+G++ +L + S
Sbjct: 1063 ALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCS 1122
Query: 77 PSYLLEYYNCS---TLEDVFLYLCEQD--QILFSL-------VGSESA--FGGQQRRVSF 122
+ + Y + S + E++ E + Q + SL VG + GGQ++R++
Sbjct: 1123 IAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAI 1182
Query: 123 AVSLIHDPKILILDEPTVGLD 143
A +L+ P IL+LDE T LD
Sbjct: 1183 ARALVRQPHILLLDEATSALD 1203
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 47.8 bits (112), Expect = 2e-06, Method: Composition-based stats.
Identities = 45/152 (29%), Positives = 79/152 (51%), Gaps = 19/152 (12%)
Query: 9 LNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLR--LDHGSISLSARTVRDIG--YMPQV- 63
LN + L+G SGCGK+T + ++ RL LD G +S+ + +R I Y+ ++
Sbjct: 409 LNLKVKSGQTVALVGNSGCGKSTTVQ-LMQRLYDPLD-GMVSIDGQDIRTINVRYLREII 466
Query: 64 GLMRSGALLAEDSPSYLLEY-YNCSTLEDVFLYLCEQDQILF---------SLVGSESA- 112
G++ +L + + + Y T++++ + E + F +LVG A
Sbjct: 467 GVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQ 526
Query: 113 -FGGQQRRVSFAVSLIHDPKILILDEPTVGLD 143
GGQ++R++ A +L+ +PKIL+LDE T LD
Sbjct: 527 LSGGQKQRIAIARALVRNPKILLLDEATSALD 558
Score = 45.1 bits (105), Expect = 2e-05, Method: Composition-based stats.
Identities = 39/141 (27%), Positives = 70/141 (49%), Gaps = 17/141 (12%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYM---PQVGLMRSGALLAEDS 76
L+G SGCGK+T++ + GS+ L + ++ + Q+G++ +L + S
Sbjct: 1063 ALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCS 1122
Query: 77 PSYLLEYYNCS---TLEDVFLYLCEQD--QILFSL-------VGSESA--FGGQQRRVSF 122
+ + Y + S + E++ E + Q + SL VG + GGQ++R++
Sbjct: 1123 IAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAI 1182
Query: 123 AVSLIHDPKILILDEPTVGLD 143
A +L+ P IL+LDE T LD
Sbjct: 1183 ARALVRQPHILLLDEATSALD 1203
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 66/157 (42%), Gaps = 15/157 (9%)
Query: 5 SASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVG 64
+ + LN I LLGPSGCGKTT L I G I RD+ Y+P
Sbjct: 26 AVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGD---RDVTYLPPKD 82
Query: 65 LMRSGALLAEDSPSYLLEYYNCS-----------TLEDVFLYLCEQDQILFSLVGSESAF 113
S + ++ Y N + ++ + E QI L +
Sbjct: 83 RNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQL 142
Query: 114 -GGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLSFS 149
GGQ++RV+ A +++ +P +L++DEP LD L +
Sbjct: 143 SGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVA 179
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 66/157 (42%), Gaps = 15/157 (9%)
Query: 5 SASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVG 64
+ + LN I LLGPSGCGKTT L I G I RD+ Y+P
Sbjct: 27 AVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGD---RDVTYLPPKD 83
Query: 65 LMRSGALLAEDSPSYLLEYYNCS-----------TLEDVFLYLCEQDQILFSLVGSESAF 113
S + ++ Y N + ++ + E QI L +
Sbjct: 84 RNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQL 143
Query: 114 -GGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLSFS 149
GGQ++RV+ A +++ +P +L++DEP LD L +
Sbjct: 144 SGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVA 180
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 47.0 bits (110), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 61/150 (40%), Gaps = 38/150 (25%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSI-----SLSAR-----TVRD--------IGYMPQ 62
++GPSG GK+T L C+ D G I +L A+ VR+ P
Sbjct: 34 VIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPH 93
Query: 63 VGLMRSGALLAEDSPSYLLEYYNCSTLEDVFLYLCEQDQILFSLVG--------SESAFG 114
+ ++ + L + E +E L VG +S G
Sbjct: 94 MTVLNNITLAPMKVRKWPREKAEAKAME------------LLDKVGLKDKAHAYPDSLSG 141
Query: 115 GQQRRVSFAVSLIHDPKILILDEPTVGLDP 144
GQ +RV+ A +L +PKI++ DEPT LDP
Sbjct: 142 GQAQRVAIARALAMEPKIMLFDEPTSALDP 171
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 46.6 bits (109), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 68/148 (45%), Gaps = 24/148 (16%)
Query: 16 VTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAED 75
VTA +LG +G GK+TL L+ G I + + D + L S ++ +D
Sbjct: 36 VTA--ILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPI-DYSRKGIMKLRESIGIVFQD 92
Query: 76 SPSYLLEYYNCSTLEDVFLYLCE----QDQILFSLVGSESAFG--------------GQQ 117
+ L ++ S +DV +D+I + + G GQ+
Sbjct: 93 PDNQL---FSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQK 149
Query: 118 RRVSFAVSLIHDPKILILDEPTVGLDPV 145
+RV+ A L+ +PK+LILDEPT GLDP+
Sbjct: 150 KRVAIAGVLVMEPKVLILDEPTAGLDPM 177
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 46.6 bits (109), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 61/150 (40%), Gaps = 38/150 (25%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSI-----SLSAR-----TVRD--------IGYMPQ 62
++GPSG GK+T L C+ D G I +L A+ VR+ P
Sbjct: 55 VIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPH 114
Query: 63 VGLMRSGALLAEDSPSYLLEYYNCSTLEDVFLYLCEQDQILFSLVG--------SESAFG 114
+ ++ + L + E +E L VG +S G
Sbjct: 115 MTVLNNITLAPMKVRKWPREKAEAKAME------------LLDKVGLKDKAHAYPDSLSG 162
Query: 115 GQQRRVSFAVSLIHDPKILILDEPTVGLDP 144
GQ +RV+ A +L +PKI++ DEPT LDP
Sbjct: 163 GQAQRVAIARALAMEPKIMLFDEPTSALDP 192
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 46.2 bits (108), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 72/140 (51%), Gaps = 22/140 (15%)
Query: 23 GPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDI---GYMPQVGLM-RSGALLA---ED 75
GPSG GK+T+ S + + G I++ + + +I + Q+G + + A++A +
Sbjct: 35 GPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRE 94
Query: 76 SPSYLLEYYNCSTLEDVFLYL--------CEQ--DQILFSLVGSESAF--GGQQRRVSFA 123
+ +Y LE T ED++ L E DQ L + VG GGQ++R++ A
Sbjct: 95 NLTYGLE--GDYTDEDLWQVLDLAFARSFVENMPDQ-LNTEVGERGVKISGGQRQRLAIA 151
Query: 124 VSLIHDPKILILDEPTVGLD 143
+ + +PKIL+LDE T LD
Sbjct: 152 RAFLRNPKILMLDEATASLD 171
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 46.2 bits (108), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 67/158 (42%), Gaps = 37/158 (23%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAEDSPSYL 80
++GP+G GK+TL++ I L+ D G + + DI L G + +P L
Sbjct: 38 IIGPNGSGKSTLINVITGFLKADEGRVYFENK---DITNKEPAELYHYGIVRTFQTPQPL 94
Query: 81 LEYYNCSTLEDVFL-YLCEQDQILFSLVGS----------ESAF---------------- 113
E + LE++ + +C + L SL E AF
Sbjct: 95 KE---MTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKA 151
Query: 114 ----GGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLS 147
GGQ + V +L+ +PK++++DEP G+ P L+
Sbjct: 152 GELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLA 189
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 45.8 bits (107), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 19/30 (63%), Positives = 25/30 (83%)
Query: 114 GGQQRRVSFAVSLIHDPKILILDEPTVGLD 143
GG++RRV+ A ++H+P ILILDEP VGLD
Sbjct: 141 GGEKRRVAIASVIVHEPDILILDEPLVGLD 170
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 45.8 bits (107), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 19/30 (63%), Positives = 25/30 (83%)
Query: 114 GGQQRRVSFAVSLIHDPKILILDEPTVGLD 143
GG++RRV+ A ++H+P ILILDEP VGLD
Sbjct: 143 GGEKRRVAIASVIVHEPDILILDEPLVGLD 172
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 45.8 bits (107), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 62/135 (45%), Gaps = 17/135 (12%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV-------RDIGYMPQVGLMRSGALLA 73
LLGP+G GK+ L I ++ D G + L+ + R IG++PQ AL
Sbjct: 29 LLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQ-----DYALFP 83
Query: 74 E----DSPSYLLEYYNCSTLEDVFLYLCEQDQILFSLVGSESAF-GGQQRRVSFAVSLIH 128
+ +Y L + + E+ I L + GG+++RV+ A +L+
Sbjct: 84 HLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVI 143
Query: 129 DPKILILDEPTVGLD 143
P++L+LDEP +D
Sbjct: 144 QPRLLLLDEPLSAVD 158
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 67/139 (48%), Gaps = 18/139 (12%)
Query: 19 YGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRD--------IGYMPQVGLMRSGA 70
+GL+GP+G GKTT L I ++ G +++ + V + I Y+P+ +GA
Sbjct: 44 FGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPE----EAGA 99
Query: 71 LLAEDSPSYL---LEYY--NCSTLEDVFLYLCEQDQILFSLVGSESAFG-GQQRRVSFAV 124
YL +Y + S +E++ E + + S + G R++ A
Sbjct: 100 YRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIAR 159
Query: 125 SLIHDPKILILDEPTVGLD 143
+L+ +P++ ILDEPT GLD
Sbjct: 160 ALMVNPRLAILDEPTSGLD 178
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 69/139 (49%), Gaps = 15/139 (10%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV---------RDIGYMPQVGLMRSGA 70
G++G SG GK+TL I ++G + + + R +G + Q ++ + +
Sbjct: 33 GIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRS 92
Query: 71 LLAEDS---PSYLLEYY-NCSTLEDVFLYLCEQDQILFSLVGSESA--FGGQQRRVSFAV 124
++ S P +E + L ++ E + ++VG + A GGQ++R++ A
Sbjct: 93 IIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIAR 152
Query: 125 SLIHDPKILILDEPTVGLD 143
+L+++PKILI DE T LD
Sbjct: 153 ALVNNPKILIFDEATSALD 171
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 69/139 (49%), Gaps = 15/139 (10%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV---------RDIGYMPQVGLMRSGA 70
G++G SG GK+TL I ++G + + + R +G + Q ++ + +
Sbjct: 39 GIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRS 98
Query: 71 LLAEDS---PSYLLEYY-NCSTLEDVFLYLCEQDQILFSLVGSESA--FGGQQRRVSFAV 124
++ S P +E + L ++ E + ++VG + A GGQ++R++ A
Sbjct: 99 IIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIAR 158
Query: 125 SLIHDPKILILDEPTVGLD 143
+L+++PKILI DE T LD
Sbjct: 159 ALVNNPKILIFDEATSALD 177
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 63/147 (42%), Gaps = 29/147 (19%)
Query: 21 LLGPSGCGKTTLLSCI----------VNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGA 70
L G +G GKTTLL+ + VN G + SA TVR +G +
Sbjct: 52 LYGLNGAGKTTLLNILNAYEPATSGTVNLFGKXPGKVGYSAETVRQ-----HIGFVSHSL 106
Query: 71 LLAEDSPSYLLEYYNCSTLEDVFLYLCEQDQI------LFSLVG----SESAFG----GQ 116
L +++ + + +Y D+I L LVG ++ G G+
Sbjct: 107 LEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGXSAKAQQYIGYLSTGE 166
Query: 117 QRRVSFAVSLIHDPKILILDEPTVGLD 143
++RV A +L P++LILDEP GLD
Sbjct: 167 KQRVXIARALXGQPQVLILDEPAAGLD 193
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 69/139 (49%), Gaps = 15/139 (10%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV---------RDIGYMPQVGLMRSGA 70
G++G SG GK+TL I ++G + + + R +G + Q ++ + +
Sbjct: 35 GIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRS 94
Query: 71 LLAEDS---PSYLLEYY-NCSTLEDVFLYLCEQDQILFSLVGSESA--FGGQQRRVSFAV 124
++ S P +E + L ++ E + ++VG + A GGQ++R++ A
Sbjct: 95 IIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIAR 154
Query: 125 SLIHDPKILILDEPTVGLD 143
+L+++PKILI DE T LD
Sbjct: 155 ALVNNPKILIFDEATSALD 173
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 69/139 (49%), Gaps = 15/139 (10%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV---------RDIGYMPQVGLMRSGA 70
G++G SG GK+TL I ++G + + + R +G + Q ++ + +
Sbjct: 33 GIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRS 92
Query: 71 LLAEDS---PSYLLEYY-NCSTLEDVFLYLCEQDQILFSLVGSESA--FGGQQRRVSFAV 124
++ S P +E + L ++ E + ++VG + A GGQ++R++ A
Sbjct: 93 IIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIAR 152
Query: 125 SLIHDPKILILDEPTVGLD 143
+L+++PKILI DE T LD
Sbjct: 153 ALVNNPKILIFDEATSALD 171
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 69/139 (49%), Gaps = 15/139 (10%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV---------RDIGYMPQVGLMRSGA 70
G++G SG GK+TL I ++G + + + R +G + Q ++ + +
Sbjct: 39 GIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRS 98
Query: 71 LLAEDS---PSYLLEYY-NCSTLEDVFLYLCEQDQILFSLVGSESA--FGGQQRRVSFAV 124
++ S P +E + L ++ E + ++VG + A GGQ++R++ A
Sbjct: 99 IIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIAR 158
Query: 125 SLIHDPKILILDEPTVGLD 143
+L+++PKILI DE T LD
Sbjct: 159 ALVNNPKILIFDEATSALD 177
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 65/150 (43%), Gaps = 31/150 (20%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLM-----RSGALLAED 75
LLGPSGCGKTT L I G I + + V D P+ G+ R A++ +
Sbjct: 34 LLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVAD----PEKGIFVPPKDRDIAMVFQ- 88
Query: 76 SPSYLLEYYNCSTLEDVFLYLC-------EQDQILFSLV-----------GSESAFGGQQ 117
SY L Y + + +++ L E DQ + + GGQ+
Sbjct: 89 --SYAL-YPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQR 145
Query: 118 RRVSFAVSLIHDPKILILDEPTVGLDPVLS 147
+RV+ +++ P++ ++DEP LD L
Sbjct: 146 QRVALGRAIVRKPQVFLMDEPLSNLDAKLR 175
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 69/139 (49%), Gaps = 15/139 (10%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV---------RDIGYMPQVGLMRSGA 70
G++G +G GK+TL I ++G + + + R +G + Q ++ + +
Sbjct: 35 GIVGRAGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRS 94
Query: 71 LLAEDS---PSYLLEYY-NCSTLEDVFLYLCEQDQILFSLVGSESA--FGGQQRRVSFAV 124
++ S P +E + L ++ E + ++VG + A GGQ++R++ A
Sbjct: 95 IIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIAR 154
Query: 125 SLIHDPKILILDEPTVGLD 143
+L+++PKILI DE T LD
Sbjct: 155 ALVNNPKILIFDEATSALD 173
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 73/145 (50%), Gaps = 25/145 (17%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV-----------RDIGYMPQVGLMRSG 69
++G SGCGKTTLL C+ + D G ISLS +T+ R +GY+ Q G++
Sbjct: 35 IIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFP- 93
Query: 70 ALLAEDSPSYLLEYYNCSTLEDVFLYLCEQDQILFSLVG-SESA-------FGGQQRRVS 121
L + +Y L T ++ ++ + + L G SE A GGQQ+R +
Sbjct: 94 HLTVYRNIAYGLGNGKGRTAQER-----QRIEAMLELTGISELAGRYPHELSGGQQQRAA 148
Query: 122 FAVSLIHDPKILILDEPTVGLDPVL 146
A +L DP++++LDEP LD L
Sbjct: 149 LARALAPDPELILLDEPFSALDEQL 173
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 43.9 bits (102), Expect = 3e-05, Method: Composition-based stats.
Identities = 38/139 (27%), Positives = 64/139 (46%), Gaps = 15/139 (10%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDI---GYMPQVGLMRSGALLAEDS 76
+G SG GK+TL++ I + G I + ++D Q+GL++ +L D+
Sbjct: 371 AFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDT 430
Query: 77 --PSYLL--------EYYNCSTLEDVFLYLCEQDQILFSLVGSESA--FGGQQRRVSFAV 124
+ LL E + + + ++ Q + VG GGQ++R+S A
Sbjct: 431 VKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIAR 490
Query: 125 SLIHDPKILILDEPTVGLD 143
+++P ILILDE T LD
Sbjct: 491 IFLNNPPILILDEATSALD 509
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 68/146 (46%), Gaps = 16/146 (10%)
Query: 8 SLNTVIFGVTAYGLL---GPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVG 64
+LN + F + L+ G GCGK++LLS ++ + G +++ + Y+PQ
Sbjct: 20 TLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG----SVAYVPQQA 75
Query: 65 LMRSGALLAE-------DSPSYLLEYYNCSTLEDVFLYLCEQDQILFSLVGSESAFGGQQ 117
+++ +L + P Y C+ L D+ + L D+ G + GGQ+
Sbjct: 76 WIQNDSLRENILFGCQLEEPYYRSVIQACALLPDLEI-LPSGDRTEIGEKGVNLS-GGQK 133
Query: 118 RRVSFAVSLIHDPKILILDEPTVGLD 143
+RVS A ++ + I + D+P +D
Sbjct: 134 QRVSLARAVYSNADIYLFDDPLSAVD 159
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 69/139 (49%), Gaps = 15/139 (10%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV---------RDIGYMPQVGLMRSGA 70
G++G SG GK+TL I ++G + + + R +G + Q ++ + +
Sbjct: 39 GIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRS 98
Query: 71 LLAEDS---PSYLLEYY-NCSTLEDVFLYLCEQDQILFSLVGSESA--FGGQQRRVSFAV 124
++ S P +E + L ++ E + ++VG + A GGQ++R++ A
Sbjct: 99 IIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIAR 158
Query: 125 SLIHDPKILILDEPTVGLD 143
+L+++PKILI D+ T LD
Sbjct: 159 ALVNNPKILIFDQATSALD 177
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 43.5 bits (101), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 68/157 (43%), Gaps = 35/157 (22%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSISLSAR--TVRDIGYMPQVGLMRS---------- 68
++GP+G GK+TL++ I L+ D G + + T ++ + G++R+
Sbjct: 38 IIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEM 97
Query: 69 --------GALLAEDSPSYLLEYYNCSTLEDV----------FLYLCEQDQILFSLVGSE 110
G + +SP L Y E+ FL L L+ E
Sbjct: 98 TVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSH----LYDRKAGE 153
Query: 111 SAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLS 147
+ GGQ + V +L+ +PK++++DEP G+ P L+
Sbjct: 154 LS-GGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLA 189
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 43.1 bits (100), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 24/33 (72%)
Query: 114 GGQQRRVSFAVSLIHDPKILILDEPTVGLDPVL 146
GGQQ+RVS A +L +P +L+ DEPT LDP L
Sbjct: 156 GGQQQRVSIARALAMEPDVLLFDEPTSALDPEL 188
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 42.7 bits (99), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 56/127 (44%), Gaps = 12/127 (9%)
Query: 23 GPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGAL------LAEDS 76
G +G GKT+LL I+ L G I S R I + Q + G + ++ D
Sbjct: 41 GSTGAGKTSLLMMIMGELEPSEGKIKHSGR----ISFCSQFSWIMPGTIKENIIGVSYDE 96
Query: 77 PSYLLEYYNCSTLEDVFLYLCEQDQILFSLVGSESAFGGQQRRVSFAVSLIHDPKILILD 136
Y C ED+ + E+D I+ G + GGQ+ R+S A ++ D + +LD
Sbjct: 97 YRYRSVIKACQLEEDISKF-AEKDNIVLG-EGGITLSGGQRARISLARAVYKDADLYLLD 154
Query: 137 EPTVGLD 143
P LD
Sbjct: 155 SPFGYLD 161
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 42.4 bits (98), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 60/135 (44%), Gaps = 9/135 (6%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRD-------IGYMPQVGLMRSGALLA 73
+GPSGCGK+TLL I + G + + + + D +G + Q + +A
Sbjct: 34 FVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVA 93
Query: 74 ED-SPSYLLEYYNCSTLEDVFLYLCEQDQILFSLVGSESAF-GGQQRRVSFAVSLIHDPK 131
E+ S L + + E Q+ L A GGQ++RV+ +L+ +P
Sbjct: 94 ENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPS 153
Query: 132 ILILDEPTVGLDPVL 146
+ +LDEP LD L
Sbjct: 154 VFLLDEPLSNLDAAL 168
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 42.4 bits (98), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 68/157 (43%), Gaps = 35/157 (22%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSISLSAR--TVRDIGYMPQVGLMRS---------- 68
++GP+G GK+TL++ I L+ D G + + T ++ + G++R+
Sbjct: 38 IIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEM 97
Query: 69 --------GALLAEDSPSYLLEYYNCSTLEDV----------FLYLCEQDQILFSLVGSE 110
G + +SP L Y E+ FL L L+ E
Sbjct: 98 TVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSH----LYDRKAGE 153
Query: 111 SAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLS 147
+ GGQ + V +L+ +PK++++D+P G+ P L+
Sbjct: 154 LS-GGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGLA 189
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 42.4 bits (98), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 56/128 (43%), Gaps = 13/128 (10%)
Query: 23 GPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGAL-------LAED 75
G +G GKT+LL I+ L G I S R I + Q + G + ++ D
Sbjct: 41 GSTGAGKTSLLMMIMGELEPSEGKIKHSGR----ISFCSQFSWIMPGTIKENIIFGVSYD 96
Query: 76 SPSYLLEYYNCSTLEDVFLYLCEQDQILFSLVGSESAFGGQQRRVSFAVSLIHDPKILIL 135
Y C ED+ + E+D I+ G + GGQ+ R+S A ++ D + +L
Sbjct: 97 EYRYRSVIKACQLEEDISKF-AEKDNIVLG-EGGITLSGGQRARISLARAVYKDADLYLL 154
Query: 136 DEPTVGLD 143
D P LD
Sbjct: 155 DSPFGYLD 162
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 42.4 bits (98), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 60/135 (44%), Gaps = 9/135 (6%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRD-------IGYMPQVGLMRSGALLA 73
+GPSGCGK+TLL I + G + + + + D +G + Q + +A
Sbjct: 34 FVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVA 93
Query: 74 ED-SPSYLLEYYNCSTLEDVFLYLCEQDQILFSLVGSESAF-GGQQRRVSFAVSLIHDPK 131
E+ S L + + E Q+ L A GGQ++RV+ +L+ +P
Sbjct: 94 ENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPS 153
Query: 132 ILILDEPTVGLDPVL 146
+ +LDEP LD L
Sbjct: 154 VFLLDEPLSNLDAAL 168
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 70/160 (43%), Gaps = 22/160 (13%)
Query: 7 SSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRD---------I 57
S+N I T L+G +G GK+T+ + R G I + + V I
Sbjct: 37 KSINFFIPSGTTCALVGHTGSGKSTIAKLLY-RFYDAEGDIKIGGKNVNKYNRNSIRSII 95
Query: 58 GYMPQVGLMRS---------GALLAEDSPSYLLEYYNCSTLEDVFLYLCEQDQILFSLVG 108
G +PQ ++ + G L A D +++ + L D L ++ + G
Sbjct: 96 GIVPQDTILFNETIKYNILYGKLDATDEE--VIKATKSAQLYDFIEALPKKWDTIVGNKG 153
Query: 109 SESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLSF 148
+ + GG+++R++ A L+ DPKI+I DE T LD +
Sbjct: 154 MKLS-GGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEY 192
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 56/128 (43%), Gaps = 13/128 (10%)
Query: 23 GPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGAL-------LAED 75
G +G GKT+LL I+ L G I S R I + Q + G + ++ D
Sbjct: 53 GSTGAGKTSLLMMIMGELEPSEGKIKHSGR----ISFCSQFSWIMPGTIKENIIFGVSYD 108
Query: 76 SPSYLLEYYNCSTLEDVFLYLCEQDQILFSLVGSESAFGGQQRRVSFAVSLIHDPKILIL 135
Y C ED+ + E+D I+ G + GGQ+ R+S A ++ D + +L
Sbjct: 109 EYRYRSVIKACQLEEDISKF-AEKDNIVLG-EGGITLSGGQRARISLARAVYKDADLYLL 166
Query: 136 DEPTVGLD 143
D P LD
Sbjct: 167 DSPFGYLD 174
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 42.4 bits (98), Expect = 1e-04, Method: Composition-based stats.
Identities = 37/140 (26%), Positives = 66/140 (47%), Gaps = 17/140 (12%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDI---GYMPQVGLMRSGALLAEDS 76
L+GP+G GKTT+++ ++ +D G I + +R I +G++ +L +
Sbjct: 385 ALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTT 444
Query: 77 PSYLLEYYNCS------------TLEDVFL-YLCEQDQILFSLVGSESAFGGQQRRVSFA 123
L+Y N T D F+ +L E + + + G E GQ++ ++
Sbjct: 445 VKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNG-EDLSQGQRQLLAIT 503
Query: 124 VSLIHDPKILILDEPTVGLD 143
+ + +PKILILDE T +D
Sbjct: 504 RAFLANPKILILDEATSNVD 523
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 56/128 (43%), Gaps = 13/128 (10%)
Query: 23 GPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGAL-------LAED 75
G +G GKT+LL I+ L G I S R I + Q + G + ++ D
Sbjct: 71 GSTGAGKTSLLMMIMGELEPSEGKIKHSGR----ISFCSQFSWIMPGTIKENIIAGVSYD 126
Query: 76 SPSYLLEYYNCSTLEDVFLYLCEQDQILFSLVGSESAFGGQQRRVSFAVSLIHDPKILIL 135
Y C ED+ + E+D I+ G + GGQ+ R+S A ++ D + +L
Sbjct: 127 EYRYRSVIKACQLEEDISKF-AEKDNIVLG-EGGITLSGGQRARISLARAVYKDADLYLL 184
Query: 136 DEPTVGLD 143
D P LD
Sbjct: 185 DSPFGYLD 192
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 56/127 (44%), Gaps = 12/127 (9%)
Query: 23 GPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGAL------LAEDS 76
G +G GKT+LL I+ L G I S R I + Q + G + ++ D
Sbjct: 71 GSTGAGKTSLLMMIMGELEPSEGKIKHSGR----ISFCSQNSWIMPGTIKENIIGVSYDE 126
Query: 77 PSYLLEYYNCSTLEDVFLYLCEQDQILFSLVGSESAFGGQQRRVSFAVSLIHDPKILILD 136
Y C ED+ + E+D I+ G + GGQ+ R+S A ++ D + +LD
Sbjct: 127 YRYRSVIKACQLEEDISKF-AEKDNIVLG-EGGITLSGGQRARISLARAVYKDADLYLLD 184
Query: 137 EPTVGLD 143
P LD
Sbjct: 185 SPFGYLD 191
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 56/127 (44%), Gaps = 12/127 (9%)
Query: 23 GPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGAL------LAEDS 76
G +G GKT+LL I+ L G I S R I + Q + G + ++ D
Sbjct: 71 GSTGAGKTSLLMMIMGELEPSEGKIKHSGR----ISFCSQNSWIMPGTIKENIIGVSYDE 126
Query: 77 PSYLLEYYNCSTLEDVFLYLCEQDQILFSLVGSESAFGGQQRRVSFAVSLIHDPKILILD 136
Y C ED+ + E+D I+ G + GGQ+ R+S A ++ D + +LD
Sbjct: 127 YRYRSVIKACQLEEDISKF-AEKDNIVLG-EGGITLSGGQRARISLARAVYKDADLYLLD 184
Query: 137 EPTVGLD 143
P LD
Sbjct: 185 SPFGYLD 191
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 61/145 (42%), Gaps = 23/145 (15%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVG------------LMRS 68
LLGPSGCGKTT L I G I + V D P+ G + +S
Sbjct: 37 LLGPSGCGKTTTLRXIAGLEEPTRGQIYIEDNLVAD----PEKGVFVPPKERDVAXVFQS 92
Query: 69 GALLAE----DSPSYLLEYYNCSTLE-DVFLYLCEQDQILFSLVGSESAF--GGQQRRVS 121
AL D+ ++ L+ E D + + L L+ + GGQ++RV+
Sbjct: 93 YALYPHXTVYDNIAFPLKLRKVPKQEIDKRVREVAEXLGLTELLNRKPRELSGGQRQRVA 152
Query: 122 FAVSLIHDPKILILDEPTVGLDPVL 146
++I PK+ + DEP LD L
Sbjct: 153 LGRAIIRRPKVFLXDEPLSNLDAKL 177
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 41.2 bits (95), Expect = 2e-04, Method: Composition-based stats.
Identities = 36/133 (27%), Positives = 65/133 (48%), Gaps = 20/133 (15%)
Query: 19 YGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAEDSPS 78
YG+ GP+GCGK+TL+ I N ++D RTV Y+ + S +
Sbjct: 464 YGICGPNGCGKSTLMRAIANG-QVDGFPTQEECRTV----YVEH-------DIDGTHSDT 511
Query: 79 YLLEYYNCS------TLEDVFLYLCEQDQILFSLVGSESAFGGQQRRVSFAVSLIHDPKI 132
+L++ S ++D + D+++ + + S GG + +++ A +++ + I
Sbjct: 512 SVLDFVFESGVGTKEAIKDKLIEFGFTDEMIAMPISALS--GGWKMKLALARAVLRNADI 569
Query: 133 LILDEPTVGLDPV 145
L+LDEPT LD V
Sbjct: 570 LLLDEPTNHLDTV 582
Score = 28.9 bits (63), Expect = 1.1, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 114 GGQQRRVSFAVSLIHDPKILILDEPTVGLD 143
GGQ+ ++ A P +++LDEPT LD
Sbjct: 904 GGQKVKLVLAAGTWQRPHLIVLDEPTNYLD 933
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 60/135 (44%), Gaps = 9/135 (6%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRD-------IGYMPQVGLMRSGALLA 73
+GPSGCGK+TLL I + G + + + + D +G + Q + +A
Sbjct: 34 FVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVA 93
Query: 74 ED-SPSYLLEYYNCSTLEDVFLYLCEQDQILFSLVGSESAF-GGQQRRVSFAVSLIHDPK 131
E+ S L + + E Q+ L A GGQ++RV+ +L+ +P
Sbjct: 94 ENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPS 153
Query: 132 ILILDEPTVGLDPVL 146
+ +LD+P LD L
Sbjct: 154 VFLLDQPLSNLDAAL 168
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 66/148 (44%), Gaps = 16/148 (10%)
Query: 11 TVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDI---GYMPQVGLMR 67
TV+ G T L+GPSG GK+T+L + + G I + + + + +G++
Sbjct: 76 TVMPGQT-LALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVP 134
Query: 68 SGALLAEDSPSYLLEYYNCSTLEDVFLYLCEQDQILFSLVGSESAF------------GG 115
+L D+ + + Y + D + I +++ + GG
Sbjct: 135 QDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGG 194
Query: 116 QQRRVSFAVSLIHDPKILILDEPTVGLD 143
+++RV+ A +++ P I++LDE T LD
Sbjct: 195 EKQRVAIARTILKAPGIILLDEATSALD 222
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 67/153 (43%), Gaps = 41/153 (26%)
Query: 21 LLGPSGCGKTTLLSCI------------VNRLRLDHGSISLSARTVRD-IGYMPQ----V 63
++GPSG GK+T+L+ I ++ ++ + + RD IG++ Q +
Sbjct: 36 IMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLI 95
Query: 64 GLMRS-------------GALLAEDSPSYLLEYYNCSTLEDVFLYLCEQDQILFSLVGSE 110
L+ + GA+ E+ LE + LE+ F+
Sbjct: 96 PLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEE-----------RFANHKPN 144
Query: 111 SAFGGQQRRVSFAVSLIHDPKILILDEPTVGLD 143
GGQQ+RV+ A +L ++P I++ D+PT LD
Sbjct: 145 QLSGGQQQRVAIARALANNPPIILADQPTWALD 177
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 56/130 (43%), Gaps = 12/130 (9%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGAL------LA 73
+ G +G GKT+LL I+ L G I S R + + Q + G + ++
Sbjct: 68 AITGSTGSGKTSLLMLILGELEASEGIIKHSGR----VSFCSQFSWIMPGTIKENIIGVS 123
Query: 74 EDSPSYLLEYYNCSTLEDVFLYLCEQDQILFSLVGSESAFGGQQRRVSFAVSLIHDPKIL 133
D Y C +D+ + EQD + G + GGQ+ R+S A ++ D +
Sbjct: 124 YDEYRYKSVVKACQLQQDITKF-AEQDNTVLG-EGGVTLSGGQRARISLARAVYKDADLY 181
Query: 134 ILDEPTVGLD 143
+LD P LD
Sbjct: 182 LLDSPFGYLD 191
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 40.0 bits (92), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 56/131 (42%), Gaps = 13/131 (9%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGAL-------L 72
+ G +G GKT+LL I+ L G I S R + + Q + G + +
Sbjct: 68 AITGSTGSGKTSLLMLILGELEASEGIIKHSGR----VSFCSQFSWIMPGTIKENIIFGV 123
Query: 73 AEDSPSYLLEYYNCSTLEDVFLYLCEQDQILFSLVGSESAFGGQQRRVSFAVSLIHDPKI 132
+ D Y C +D+ + EQD + G + GGQ+ R+S A ++ D +
Sbjct: 124 SYDEYRYKSVVKACQLQQDITKF-AEQDNTVLG-EGGVTLSGGQRARISLARAVYKDADL 181
Query: 133 LILDEPTVGLD 143
+LD P LD
Sbjct: 182 YLLDSPFGYLD 192
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain
With Atp
Length = 290
Score = 39.7 bits (91), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 55/127 (43%), Gaps = 12/127 (9%)
Query: 23 GPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGAL------LAEDS 76
G +G GKT+LL I+ L G I S R I + Q + G + ++ D
Sbjct: 71 GSTGAGKTSLLMMIMGELEPSEGKIKHSGR----ISFCSQFSWIMPGTIKENIIGVSYDE 126
Query: 77 PSYLLEYYNCSTLEDVFLYLCEQDQILFSLVGSESAFGGQQRRVSFAVSLIHDPKILILD 136
Y C ED+ + E+D I+ G + GQQ ++S A ++ D + +LD
Sbjct: 127 YRYRSVIKACQLEEDISKF-AEKDNIVLG-EGGITLSEGQQAKISLARAVYKDADLYLLD 184
Query: 137 EPTVGLD 143
P LD
Sbjct: 185 SPFGYLD 191
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 39.7 bits (91), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 56/131 (42%), Gaps = 13/131 (9%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGAL-------L 72
+ G +G GKT+LL I+ L G I S R + + Q + G + +
Sbjct: 68 AITGSTGSGKTSLLMLILGELEASEGIIKHSGR----VSFCSQFSWIMPGTIKENIIFGV 123
Query: 73 AEDSPSYLLEYYNCSTLEDVFLYLCEQDQILFSLVGSESAFGGQQRRVSFAVSLIHDPKI 132
+ D Y C +D+ + EQD + G + GGQ+ R+S A ++ D +
Sbjct: 124 SYDEYRYKSVVKACQLQQDITKF-AEQDNTVLG-EGGVTLSGGQRARISLARAVYKDADL 181
Query: 133 LILDEPTVGLD 143
+LD P LD
Sbjct: 182 YLLDSPFGYLD 192
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 39.7 bits (91), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 56/131 (42%), Gaps = 13/131 (9%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGAL-------L 72
+ G +G GKT+LL I+ L G I S R + + Q + G + +
Sbjct: 68 AITGSTGSGKTSLLMLILGELEASEGIIKHSGR----VSFCSQFSWIMPGTIKENIISGV 123
Query: 73 AEDSPSYLLEYYNCSTLEDVFLYLCEQDQILFSLVGSESAFGGQQRRVSFAVSLIHDPKI 132
+ D Y C +D+ + EQD + G + GGQ+ R+S A ++ D +
Sbjct: 124 SYDEYRYKSVVKACQLQQDITKF-AEQDNTVLG-EGGVTLSGGQRARISLARAVYKDADL 181
Query: 133 LILDEPTVGLD 143
+LD P LD
Sbjct: 182 YLLDSPFGYLD 192
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 39.7 bits (91), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 70/153 (45%), Gaps = 41/153 (26%)
Query: 21 LLGPSGCGKTTLLSCI------------VNRLRLDHGSISLSARTVRD-IGYMPQ----V 63
++GPSG GK+T+L+ I ++ ++ + + RD IG++ Q +
Sbjct: 36 IMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLI 95
Query: 64 GLMRS-------------GALLAEDSPSYLLEYYNCSTLEDVFLYLCEQDQILFSLVGSE 110
L+ + GA+ E+ LE + LE+ F + +Q+
Sbjct: 96 PLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFAN-HKPNQL-------- 146
Query: 111 SAFGGQQRRVSFAVSLIHDPKILILDEPTVGLD 143
GGQQ+RV+ A +L ++P I++ D+PT LD
Sbjct: 147 --SGGQQQRVAIARALANNPPIILADQPTGALD 177
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 39.7 bits (91), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 56/131 (42%), Gaps = 13/131 (9%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGAL-------L 72
+ G +G GKT+LL I+ L G I S R + + Q + G + +
Sbjct: 68 AITGSTGSGKTSLLMLILGELEASEGIIKHSGR----VSFCSQFSWIMPGTIKENIIRGV 123
Query: 73 AEDSPSYLLEYYNCSTLEDVFLYLCEQDQILFSLVGSESAFGGQQRRVSFAVSLIHDPKI 132
+ D Y C +D+ + EQD + G + GGQ+ R+S A ++ D +
Sbjct: 124 SYDEYRYKSVVKACQLQQDITKF-AEQDNTVLG-EGGVTLSGGQRARISLARAVYKDADL 181
Query: 133 LILDEPTVGLD 143
+LD P LD
Sbjct: 182 YLLDSPFGYLD 192
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 39.7 bits (91), Expect = 6e-04, Method: Composition-based stats.
Identities = 36/133 (27%), Positives = 63/133 (47%), Gaps = 20/133 (15%)
Query: 19 YGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAEDSPS 78
YG+ GP+GCGK+TL I N ++D RTV Y+ + S +
Sbjct: 458 YGICGPNGCGKSTLXRAIANG-QVDGFPTQEECRTV----YVEH-------DIDGTHSDT 505
Query: 79 YLLEYYNCS------TLEDVFLYLCEQDQILFSLVGSESAFGGQQRRVSFAVSLIHDPKI 132
+L++ S ++D + D+ + + + S GG + +++ A +++ + I
Sbjct: 506 SVLDFVFESGVGTKEAIKDKLIEFGFTDEXIAXPISALS--GGWKXKLALARAVLRNADI 563
Query: 133 LILDEPTVGLDPV 145
L+LDEPT LD V
Sbjct: 564 LLLDEPTNHLDTV 576
Score = 28.9 bits (63), Expect = 1.1, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 114 GGQQRRVSFAVSLIHDPKILILDEPTVGLD 143
GGQ+ ++ A P +++LDEPT LD
Sbjct: 898 GGQKVKLVLAAGTWQRPHLIVLDEPTNYLD 927
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 39.7 bits (91), Expect = 6e-04, Method: Composition-based stats.
Identities = 36/133 (27%), Positives = 63/133 (47%), Gaps = 20/133 (15%)
Query: 19 YGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAEDSPS 78
YG+ GP+GCGK+TL I N ++D RTV Y+ + S +
Sbjct: 464 YGICGPNGCGKSTLXRAIANG-QVDGFPTQEECRTV----YVEH-------DIDGTHSDT 511
Query: 79 YLLEYYNCS------TLEDVFLYLCEQDQILFSLVGSESAFGGQQRRVSFAVSLIHDPKI 132
+L++ S ++D + D+ + + + S GG + +++ A +++ + I
Sbjct: 512 SVLDFVFESGVGTKEAIKDKLIEFGFTDEXIAXPISALS--GGWKXKLALARAVLRNADI 569
Query: 133 LILDEPTVGLDPV 145
L+LDEPT LD V
Sbjct: 570 LLLDEPTNHLDTV 582
Score = 28.9 bits (63), Expect = 1.1, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 114 GGQQRRVSFAVSLIHDPKILILDEPTVGLD 143
GGQ+ ++ A P +++LDEPT LD
Sbjct: 904 GGQKVKLVLAAGTWQRPHLIVLDEPTNYLD 933
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 39.7 bits (91), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 55/128 (42%), Gaps = 13/128 (10%)
Query: 23 GPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGAL-------LAED 75
G +G GKT+LL I+ L G I S R I + Q + G + ++ D
Sbjct: 71 GSTGAGKTSLLMMIMGELEPSEGKIKHSGR----ISFCSQFSWIMPGTIKENIIFGVSYD 126
Query: 76 SPSYLLEYYNCSTLEDVFLYLCEQDQILFSLVGSESAFGGQQRRVSFAVSLIHDPKILIL 135
Y C ED+ + E+D I+ G + GQQ ++S A ++ D + +L
Sbjct: 127 EYRYRSVIKACQLEEDISKF-AEKDNIVLG-EGGITLSEGQQAKISLARAVYKDADLYLL 184
Query: 136 DEPTVGLD 143
D P LD
Sbjct: 185 DSPFGYLD 192
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 39.7 bits (91), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 61/140 (43%), Gaps = 15/140 (10%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISLSA---------RTVRDIGYMPQVGLMRSGA 70
GLLG +G GK+TLLS + RL G I + + + G +PQ + SG
Sbjct: 51 GLLGRTGSGKSTLLSAFL-RLLNTEGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGT 109
Query: 71 LLAEDSPSYLLEYYNCSTLEDV--FLYLCEQ--DQILFSLVGSESAFG-GQQRRVSFAVS 125
P+ + D + EQ ++ F LV G ++ + A S
Sbjct: 110 FRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARS 169
Query: 126 LIHDPKILILDEPTVGLDPV 145
++ KIL+LDEP+ LDPV
Sbjct: 170 VLSKAKILLLDEPSAHLDPV 189
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 38.5 bits (88), Expect = 0.002, Method: Composition-based stats.
Identities = 32/129 (24%), Positives = 52/129 (40%), Gaps = 16/129 (12%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAE----- 74
G++GP+G GKTT + + G + + Y PQ + E
Sbjct: 372 GIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDL----TVAYKPQYIKAEYEGTVYELLSKI 427
Query: 75 DSPSYLLEYYNCSTLEDVFLYLCEQDQILFSLVGSESAFGGQQRRVSFAVSLIHDPKILI 134
DS +Y L+ + + + E GG+ +RV+ A +L+ D I +
Sbjct: 428 DSSKLNSNFYKTELLKPLGIIDLYDRNV-------EDLSGGELQRVAIAATLLRDADIYL 480
Query: 135 LDEPTVGLD 143
LDEP+ LD
Sbjct: 481 LDEPSAYLD 489
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 38.5 bits (88), Expect = 0.002, Method: Composition-based stats.
Identities = 32/129 (24%), Positives = 52/129 (40%), Gaps = 16/129 (12%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAE----- 74
G++GP+G GKTT + + G + + Y PQ + E
Sbjct: 386 GIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDL----TVAYKPQYIKAEYEGTVYELLSKI 441
Query: 75 DSPSYLLEYYNCSTLEDVFLYLCEQDQILFSLVGSESAFGGQQRRVSFAVSLIHDPKILI 134
DS +Y L+ + + + E GG+ +RV+ A +L+ D I +
Sbjct: 442 DSSKLNSNFYKTELLKPLGIIDLYDRNV-------EDLSGGELQRVAIAATLLRDADIYL 494
Query: 135 LDEPTVGLD 143
LDEP+ LD
Sbjct: 495 LDEPSAYLD 503
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 23/30 (76%)
Query: 114 GGQQRRVSFAVSLIHDPKILILDEPTVGLD 143
GG ++RV A++L+ DP +LILDEPT LD
Sbjct: 157 GGMKQRVLIALALLLDPVVLILDEPTSALD 186
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 23/30 (76%)
Query: 114 GGQQRRVSFAVSLIHDPKILILDEPTVGLD 143
GGQQ+RV+ A +L ++P I++ DEPT LD
Sbjct: 148 GGQQQRVAIARALANNPPIILADEPTGALD 177
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 68/145 (46%), Gaps = 29/145 (20%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAEDSPSYL 80
++G SG GK+TLL + G + L + V D ++ L+R+ L ++
Sbjct: 35 IIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEV-DYTNEKELSLLRNRKL------GFV 87
Query: 81 LEYY----NCSTLEDVFLYLC----------EQDQILFSLVG-----SESAF---GGQQR 118
+++ + LE+V + + E+ + L S +G S + GG+Q+
Sbjct: 88 FQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQ 147
Query: 119 RVSFAVSLIHDPKILILDEPTVGLD 143
RV+ A +L ++P +L DEPT LD
Sbjct: 148 RVAIARALANEPILLFADEPTGNLD 172
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 60/142 (42%), Gaps = 21/142 (14%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAEDS--- 76
++GP+G GK+TLL + L HG L + + + P+ L R+ A++ + S
Sbjct: 41 AIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLN--SWQPK-ALARTRAVMRQYSELA 97
Query: 77 -PSYLLE--------YYNCSTLEDVFLYLCEQDQILFSLVGSESAFGGQQRRVSFAVSLI 127
P + E Y + + + + D + + GG+Q+RV A L
Sbjct: 98 FPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLA 157
Query: 128 H------DPKILILDEPTVGLD 143
P+ L LDEPT LD
Sbjct: 158 QLWQPQPTPRWLFLDEPTSALD 179
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 37.4 bits (85), Expect = 0.003, Method: Composition-based stats.
Identities = 38/128 (29%), Positives = 54/128 (42%), Gaps = 14/128 (10%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAEDSPSY 79
G++GP+G GKTT + + G I + Y PQ + E
Sbjct: 316 GIVGPNGIGKTTFVKXLAGVEEPTEGKIEWDL----TVAYKPQYIKADYEGTVYE----- 366
Query: 80 LLEYYNCSTLEDVFLYLCEQDQIL--FSLVGSE--SAFGGQQRRVSFAVSLIHDPKILIL 135
LL + S L F Y E + L L E GG+ +RV+ A +L+ D I +L
Sbjct: 367 LLSKIDASKLNSNF-YKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLL 425
Query: 136 DEPTVGLD 143
DEP+ LD
Sbjct: 426 DEPSAYLD 433
Score = 28.1 bits (61), Expect = 1.9, Method: Composition-based stats.
Identities = 34/143 (23%), Positives = 58/143 (40%), Gaps = 22/143 (15%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRL----DHGSISLSARTVRDIGYMPQVGLMRSGALLAED 75
G++GP+G GK+T + + +L D+ S R R +++G +
Sbjct: 51 GIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVV 110
Query: 76 SPSY---------------LLEYYNCSTLEDVFLYLCEQDQILFSLVGSESAFGGQQRRV 120
P Y L + LE+V L E + +L + S GG+ +RV
Sbjct: 111 KPQYVDLIPKAVKGKVIELLKKADETGKLEEVVKAL-ELENVLEREIQHLS--GGELQRV 167
Query: 121 SFAVSLIHDPKILILDEPTVGLD 143
+ A +L+ + DEP+ LD
Sbjct: 168 AIAAALLRNATFYFFDEPSSYLD 190
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 55/125 (44%), Gaps = 5/125 (4%)
Query: 23 GPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIG----YMPQVGLMRSGALLAEDSPS 78
GP+G GKTTLL I L+ G I + + + ++P+ ++ + ED
Sbjct: 42 GPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPE-EIIVPRKISVEDYLK 100
Query: 79 YLLEYYNCSTLEDVFLYLCEQDQILFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEP 138
+ Y ++ + E ++L G RRV A +L+ + +I +LD+P
Sbjct: 101 AVASLYGVKVNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDP 160
Query: 139 TVGLD 143
V +D
Sbjct: 161 VVAID 165
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 37.0 bits (84), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 61/140 (43%), Gaps = 20/140 (14%)
Query: 19 YGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV------RDIGYMPQVGLMRSGALL 72
Y ++G +G GKTTLL + L G I L +++GY+ Q +
Sbjct: 40 YVVVGKNGSGKTTLLKILAGLLAA-AGEIFLDGSPADPFLLRKNVGYVFQNPSSQIIGAT 98
Query: 73 AEDSPSYLLEYYNCSTLEDVFLYLCEQDQILFSLVGSE--------SAFGGQQRRVSFAV 124
E+ ++ LE E + ++ + + LVG + GGQ++R++ A
Sbjct: 99 VEEDVAFSLEIMGLDESE-----MRKRIKKVLELVGLSGLAAADPLNLSGGQKQRLAIAS 153
Query: 125 SLIHDPKILILDEPTVGLDP 144
L D + L LDEP LDP
Sbjct: 154 MLARDTRFLALDEPVSMLDP 173
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 36.6 bits (83), Expect = 0.005, Method: Composition-based stats.
Identities = 33/126 (26%), Positives = 60/126 (47%), Gaps = 8/126 (6%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAEDSPSY 79
G+LGP+G GKTT +V + D GS++ + + Y PQ + + +
Sbjct: 298 GILGPNGIGKTTFARILVGEITADEGSVTPEKQI---LSYKPQRIFPNYDGTVQQYLENA 354
Query: 80 LLEYYNCST--LEDVFLYLCEQDQILFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDE 137
+ + S+ E+V L ++L S V S GG+ +++ A +L + + +LD+
Sbjct: 355 SKDALSTSSWFFEEVTKRL-NLHRLLESNVNDLS--GGELQKLYIAATLAKEADLYVLDQ 411
Query: 138 PTVGLD 143
P+ LD
Sbjct: 412 PSSYLD 417
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 36.2 bits (82), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 61/137 (44%), Gaps = 24/137 (17%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQ-------------VGLM 66
+LG +GCGK+TLL ++ R G I + + IG++PQ V +
Sbjct: 35 AVLGQNGCGKSTLLDLLLGIHRPIQGKIEV----YQSIGFVPQFFSSPFAYSVLDIVLMG 90
Query: 67 RSGALLAEDSPSYLLEYYNCSTLEDVFLYLCEQDQILFSLVGSESAFGGQQRRVSFAVSL 126
RS + P Y + +L L + F+ S GGQ++ + A ++
Sbjct: 91 RSTHINTFAKPKS--HDYQVAMQALDYLNLTHLAKREFT-----SLSGGQRQLILIARAI 143
Query: 127 IHDPKILILDEPTVGLD 143
+ K+++LDEPT LD
Sbjct: 144 ASECKLILLDEPTSALD 160
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 35.4 bits (80), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 65/144 (45%), Gaps = 18/144 (12%)
Query: 16 VTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV--RDIGYM-PQVGLMRSGALL 72
VTA L+GP+G GK+T+ + + N + G + L + D Y+ QV + LL
Sbjct: 47 VTA--LVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLL 104
Query: 73 AEDSPSYLLEY--YNCSTLEDVFLYLCEQDQILF---------SLVGS--ESAFGGQQRR 119
S + Y T+E++ E F + VG GGQ++
Sbjct: 105 FGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQA 164
Query: 120 VSFAVSLIHDPKILILDEPTVGLD 143
V+ A +LI P++LILD+ T LD
Sbjct: 165 VALARALIRKPRLLILDQATSALD 188
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 34.7 bits (78), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 69/152 (45%), Gaps = 34/152 (22%)
Query: 16 VTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSA------------RTVRDIGYMPQV 63
VTA L+GP+G GK+T+ + + N + G + L R V +G PQV
Sbjct: 45 VTA--LVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQV 102
Query: 64 ---GLMRSGALLAEDSPSYLLEYYNCSTLE---DVFL------YLCEQDQILFSLVGSES 111
L + A P+ +E + ++ F+ Y E D+ GS+
Sbjct: 103 FGRSLQENIAYGLTQKPT--MEEITAAAVKSGAHSFISGLPQGYDTEVDE-----AGSQL 155
Query: 112 AFGGQQRRVSFAVSLIHDPKILILDEPTVGLD 143
+ GGQ++ V+ A +LI P +LILD+ T LD
Sbjct: 156 S-GGQRQAVALARALIRKPCVLILDDATSALD 186
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 34.7 bits (78), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 64/144 (44%), Gaps = 18/144 (12%)
Query: 16 VTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV--RDIGYM-PQVGLMRSGALL 72
VTA L+GP+G GK+T+ + + N + G + L + D Y+ QV + LL
Sbjct: 47 VTA--LVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLL 104
Query: 73 AEDSPSYLLEY--YNCSTLEDVFLYLCEQDQILF---------SLVGS--ESAFGGQQRR 119
S + Y T+E++ E F + VG GGQ++
Sbjct: 105 FGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQA 164
Query: 120 VSFAVSLIHDPKILILDEPTVGLD 143
V+ A +LI P++LILD T LD
Sbjct: 165 VALARALIRKPRLLILDNATSALD 188
>pdb|3RYT|A Chain A, The Plexin A1 Intracellular Region In Complex With Rac1
pdb|3RYT|B Chain B, The Plexin A1 Intracellular Region In Complex With Rac1
Length = 626
Score = 34.3 bits (77), Expect = 0.026, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 52 RTVRDIGYMPQVGLMRSGALLAEDSPSYLLEYYNCSTLEDVFLYLCE-QDQILFSLVGSE 110
R DI MP + A LAE S +L ++ + S L +++ Y+ + +D+IL +L E
Sbjct: 545 RYYADIAKMPAISDQDMSAYLAEQSRLHLSQFNSMSALHEIYSYIAKYKDEILVALEKDE 604
Query: 111 SA 112
A
Sbjct: 605 QA 606
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 33.9 bits (76), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 65/144 (45%), Gaps = 18/144 (12%)
Query: 16 VTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV--RDIGYM-PQVGLMRSGALL 72
VTA L+GP+G GK+T+ + + N + G + L + D Y+ QV + LL
Sbjct: 47 VTA--LVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLL 104
Query: 73 AEDSPSYLLEY--YNCSTLEDVFLYLCE---QDQILFSLVGSESAFG--------GQQRR 119
S + Y T+E++ E D I G ++ G GQ++
Sbjct: 105 FGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLAVGQRQA 164
Query: 120 VSFAVSLIHDPKILILDEPTVGLD 143
V+ A +LI P++LILD T LD
Sbjct: 165 VALARALIRKPRLLILDNATSALD 188
>pdb|2QE7|D Chain D, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
pdb|2QE7|E Chain E, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
pdb|2QE7|F Chain F, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
Length = 462
Score = 31.2 bits (69), Expect = 0.23, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISLSA 51
GL G +G GKT L+ ++N + +HG +S+ A
Sbjct: 148 GLFGGAGVGKTVLIQELINNVAQEHGGLSVFA 179
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 31.2 bits (69), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 36/159 (22%), Positives = 61/159 (38%), Gaps = 25/159 (15%)
Query: 7 SSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVN--RLRLDHGSISLSARTVRDIGYMPQVG 64
+N V+ + L+GP+G GK+TL + ++ G I L + ++ +
Sbjct: 20 KGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERA- 78
Query: 65 LMRSGALLAEDSP---------SYLLEYYNCSTLEDV-----------FLYLCEQDQILF 104
R G LA P ++L +V L L + D+
Sbjct: 79 --RKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYL 136
Query: 105 SLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLD 143
S +E GG+++R L+ +P +LDE GLD
Sbjct: 137 SRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLD 175
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 30.8 bits (68), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 60/129 (46%), Gaps = 9/129 (6%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDI-GYMPQVGLMRSGALLAEDSPSY 79
+LGP+G GKTTLL I L G+I ++ VR I Y+ + +
Sbjct: 35 ILGPNGSGKTTLLRAISGLLPYS-GNIFINGMEVRKIRNYIRYSTNLPEAYEIGVTVNDI 93
Query: 80 LLEYYNCSTLE-DVFLYLCEQ----DQILFSLVGSESAFGGQQRRVSFAVSLIHDPKILI 134
+ Y L+ D+FL + + ++IL + SA GQ V +++L P+I+
Sbjct: 94 VYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSA--GQSVLVRTSLALASQPEIVG 151
Query: 135 LDEPTVGLD 143
LDEP +D
Sbjct: 152 LDEPFENVD 160
>pdb|4AK9|A Chain A, Structure Of Chloroplast Ftsy From Physcomitrella Patens
pdb|4AK9|B Chain B, Structure Of Chloroplast Ftsy From Physcomitrella Patens
Length = 318
Score = 30.4 bits (67), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 64/131 (48%), Gaps = 9/131 (6%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSISLSA-RTVR-DIGYMPQVGLMRSGA--LLAED- 75
++G +G GKTT L + NR + + + ++A T R G +V R+G+ ++AE
Sbjct: 121 IVGVNGGGKTTTLGKLANRFKKEGVKVLMAAGDTFRAAAGEQLEVWAQRTGSEIVMAEGP 180
Query: 76 --SPSYLL-EYYNCSTLEDVFLYLCEQDQILFSLVGSESAFGGQQRRVSFAVSLIHDPKI 132
P+ +L + + ED + LC+ L + G +R VS A+S + +
Sbjct: 181 KPRPAAVLSQAVRRAVEEDFDVVLCDTSGRLHTNYNLMEELRGCKRAVSKALSSAPNEVL 240
Query: 133 LILDEPTVGLD 143
L+LD T GL+
Sbjct: 241 LVLD-GTTGLN 250
>pdb|1SKY|E Chain E, Crystal Structure Of The Nucleotide Free Alpha3beta3
Sub-Complex Of F1-Atpase From The Thermophilic Bacillus
Ps3
Length = 473
Score = 30.4 bits (67), Expect = 0.36, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISLSA 51
GL G +G GKT L+ +++ + +HG IS+ A
Sbjct: 155 GLFGGAGVGKTVLIQELIHNIAQEHGGISVFA 186
>pdb|1S4Q|A Chain A, Crystal Structure Of Guanylate Kinase From Mycobacterium
Tuberculosis (Rv1389)
Length = 228
Score = 30.4 bits (67), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVR 55
L GPS GK+T++ C+ R+ H S+S + R R
Sbjct: 28 LSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPR 62
>pdb|1ZNW|A Chain A, Crystal Structure Of Unliganded Form Of Mycobacterium
Tuberculosis Guanylate Kinase
pdb|1ZNX|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Guanylate Kinase In Complex With Gmp
pdb|1ZNY|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Guanylate Kinase In Complex With Gdp
pdb|1ZNZ|A Chain A, Crystal Structure Of The Reduced Form Of Mycobacterium
Tuberculosis Guanylate Kinase In Complex With Gdp
Length = 207
Score = 30.4 bits (67), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVR 55
L GPS GK+T++ C+ R+ H S+S + R R
Sbjct: 25 LSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPR 59
>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|B Chain B, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|C Chain C, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|D Chain D, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|E Chain E, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|F Chain F, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|G Chain G, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|H Chain H, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|I Chain I, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|J Chain J, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|K Chain K, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|L Chain L, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|M Chain M, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|N Chain N, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
Length = 301
Score = 29.6 bits (65), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Query: 14 FGVT-AYGLL--GPSGCGKTTLLSCIVNRLRLDHGSIS 48
FG+T + G+L GP GCGKT L I N + + SI
Sbjct: 44 FGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIK 81
>pdb|1Z8F|A Chain A, Guanylate Kinase Double Mutant A58c, T157c From
Mycobacterium Tuberculosis (Rv1389)
Length = 228
Score = 29.6 bits (65), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVR 55
L GPS GK+T++ C+ R+ H S+S + R R
Sbjct: 28 LSGPSAVGKSTVVRCLRERIPNLHFSVSATTRCPR 62
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 29.3 bits (64), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 65/141 (46%), Gaps = 24/141 (17%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAEDSPSYL 80
L+GP+G GK+TLL+ + + GSI + + + + ++ L R+ L + +P +
Sbjct: 31 LVGPNGAGKSTLLARMAG-MTSGKGSIQFAGQPL-EAWSATKLALHRA-YLSQQQTPPFA 87
Query: 81 LEYYNCSTLE-----------DVFLYLCEQDQILFSLVGSESAFGGQQRRVSFAVSLIH- 128
++ TL DV L D++ S + GG+ +RV A ++
Sbjct: 88 TPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRS---TNQLSGGEWQRVRLAAVVLQI 144
Query: 129 ----DP--KILILDEPTVGLD 143
+P ++L+LD+P LD
Sbjct: 145 TPQANPAGQLLLLDQPMCSLD 165
>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
pdb|3TSO|B Chain B, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
Length = 178
Score = 29.3 bits (64), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 6/68 (8%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAEDSPSYL 80
L+G SG GKT LLS R S +RT + + + ++ + A+ A+ +
Sbjct: 15 LIGESGVGKTNLLS------RFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAG 68
Query: 81 LEYYNCST 88
LE Y T
Sbjct: 69 LERYRAIT 76
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 28.9 bits (63), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 63/141 (44%), Gaps = 24/141 (17%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAEDSPSYL 80
L+GP+G GK+TLL+ GSI + + + + ++ L R+ L + +P +
Sbjct: 31 LVGPNGAGKSTLLARXAGXTS-GKGSIQFAGQPL-EAWSATKLALHRA-YLSQQQTPPFA 87
Query: 81 LEYYNCSTLE-----------DVFLYLCEQDQILFSLVGSESAFGGQQRRVSFAVSLIH- 128
++ TL DV L D++ S + GG+ +RV A ++
Sbjct: 88 TPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRS---TNQLSGGEWQRVRLAAVVLQI 144
Query: 129 ----DP--KILILDEPTVGLD 143
+P ++L+LDEP LD
Sbjct: 145 TPQANPAGQLLLLDEPXNSLD 165
>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp
Length = 193
Score = 28.9 bits (63), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 6/68 (8%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAEDSPSYL 80
L+G SG GKT LLS R S +RT + + + ++ + A+ A+ +
Sbjct: 30 LIGESGVGKTNLLS------RFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAG 83
Query: 81 LEYYNCST 88
LE Y T
Sbjct: 84 LERYRAIT 91
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 28.9 bits (63), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 65/141 (46%), Gaps = 24/141 (17%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAEDSPSYL 80
L+GP+G GK+TLL+ + + GSI + + + + ++ L R+ L + +P +
Sbjct: 31 LVGPNGAGKSTLLARMAG-MTSGKGSIQFAGQPL-EAWSATKLALHRA-YLSQQQTPPFA 87
Query: 81 LEYYNCSTLE-----------DVFLYLCEQDQILFSLVGSESAFGGQQRRVSFAVSLIH- 128
++ TL DV L D++ S + GG+ +RV A ++
Sbjct: 88 TPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRS---TNQLSGGEWQRVRLAAVVLQI 144
Query: 129 ----DP--KILILDEPTVGLD 143
+P ++L+LD+P LD
Sbjct: 145 TPQANPAGQLLLLDQPMNSLD 165
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 63/141 (44%), Gaps = 24/141 (17%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAEDSPSYL 80
L+GP+G GK+TLL+ GSI + + + + ++ L R+ L + +P +
Sbjct: 31 LVGPNGAGKSTLLARXAGXTS-GKGSIQFAGQPL-EAWSATKLALHRA-YLSQQQTPPFA 87
Query: 81 LEYYNCSTLE-----------DVFLYLCEQDQILFSLVGSESAFGGQQRRVSFAVSLIH- 128
++ TL DV L D++ S + GG+ +RV A ++
Sbjct: 88 TPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRS---TNQLSGGEWQRVRLAAVVLQI 144
Query: 129 ----DP--KILILDEPTVGLD 143
+P ++L+LDEP LD
Sbjct: 145 TPQANPAGQLLLLDEPXNSLD 165
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 28.9 bits (63), Expect = 1.2, Method: Composition-based stats.
Identities = 34/132 (25%), Positives = 57/132 (43%), Gaps = 24/132 (18%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAEDSPSYL 80
++G +G GKTTL+ + L+ D G +DI P++ + +A P +
Sbjct: 383 MMGENGTGKTTLIKLLAGALKPDEG---------QDI---PKLNVSMKPQKIAPKFPGTV 430
Query: 81 L---------EYYNCSTLEDVFLYLCEQDQILFSLVGSESAFGGQQRRVSFAVSLIHDPK 131
++ N DV L D I+ V S GG+ +RV+ ++L
Sbjct: 431 RQLFFKKIRGQFLNPQFQTDVVKPL-RIDDIIDQEVQHLS--GGELQRVAIVLALGIPAD 487
Query: 132 ILILDEPTVGLD 143
I ++DEP+ LD
Sbjct: 488 IYLIDEPSAYLD 499
>pdb|3QAV|A Chain A, Crystal Structure Of A Glutathione S-transferase From
Antarctic Clam Laternula Elliptica
pdb|3QAW|A Chain A, Crystal Structure Of A Glutathione-s-transferase From
Antarctic Clam Laternula Elliptica In A Complex With
Glutathione
Length = 243
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 38 NRLRLDHGSISLSARTVRDIGYMPQVGLM-RSGALLAEDSPSYLLEYYN 85
N L+ G ++ T+ D+ + P V L+ R GA L + P+ + +YYN
Sbjct: 167 NYLKQTGGFVATKEFTMADVFFFPMVALIVRQGANLKDSYPN-IFKYYN 214
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 28.5 bits (62), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Query: 114 GGQQRRVSFAVSLIHDPK---ILILDEPTVGLDPV 145
GG+ +R+ A L + + +LDEPT GL P
Sbjct: 733 GGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPA 767
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 28.5 bits (62), Expect = 1.5, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Query: 14 FGVT-AYGLL--GPSGCGKTTLLSCIVNRLRLDHGSI 47
FG+T + G+L GP GCGKT L I N + + SI
Sbjct: 506 FGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISI 542
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 28.5 bits (62), Expect = 1.5, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Query: 14 FGVT-AYGLL--GPSGCGKTTLLSCIVNRLRLDHGSI 47
FG+T + G+L GP GCGKT L I N + + SI
Sbjct: 506 FGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISI 542
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 28.1 bits (61), Expect = 2.1, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 114 GGQQRRVSFAVSLIHDPK--ILILDEPTVGLDP 144
GG+ +R+ A + I +LDEPT+GL P
Sbjct: 467 GGESQRIRLATQIGSGLTGVIYVLDEPTIGLHP 499
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C-
Terminal Aaa-Atpase Domain
Length = 274
Score = 27.7 bits (60), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 16 VTAYGLL--GPSGCGKTTLLSCIVNRLRLDHGSIS 48
VT G+L GP GCGKT L + N L+ S+
Sbjct: 42 VTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVK 76
>pdb|4DWJ|A Chain A, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus In Complex With Thymidine
Monophosphate
pdb|4DWJ|B Chain B, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus In Complex With Thymidine
Monophosphate
pdb|4DWJ|C Chain C, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus In Complex With Thymidine
Monophosphate
pdb|4DWJ|D Chain D, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus In Complex With Thymidine
Monophosphate
pdb|4DWJ|E Chain E, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus In Complex With Thymidine
Monophosphate
pdb|4DWJ|F Chain F, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus In Complex With Thymidine
Monophosphate
pdb|4DWJ|G Chain G, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus In Complex With Thymidine
Monophosphate
pdb|4DWJ|H Chain H, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus In Complex With Thymidine
Monophosphate
pdb|4EAQ|A Chain A, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus In Complex With
3'-Azido-3'-Deoxythymidine-5'-Monophosphate
pdb|4EAQ|B Chain B, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus In Complex With
3'-Azido-3'-Deoxythymidine-5'-Monophosphate
pdb|4F4I|A Chain A, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus In Apo-Form
pdb|4F4I|B Chain B, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus In Apo-Form
Length = 229
Score = 27.7 bits (60), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 23 GPSGCGKTTLLSCIVNRLRLDHGSI 47
GP G GKTT+++ + +RL D+ I
Sbjct: 33 GPEGSGKTTVINEVYHRLVKDYDVI 57
>pdb|2CCJ|A Chain A, Crystal Structure Of S. Aureus Thymidylate Kinase
Complexed With Thymidine Monophosphate
pdb|2CCJ|B Chain B, Crystal Structure Of S. Aureus Thymidylate Kinase
Complexed With Thymidine Monophosphate
pdb|2CCK|A Chain A, Crystal Structure Of Unliganded S. Aureus Thymidylate
Kinase
pdb|2CCK|B Chain B, Crystal Structure Of Unliganded S. Aureus Thymidylate
Kinase
pdb|4GFD|A Chain A, Thymidylate Kinase (Tmk) From S. Aureus In Complex With
Tk-666
pdb|4GFD|B Chain B, Thymidylate Kinase (Tmk) From S. Aureus In Complex With
Tk-666
pdb|4GSY|A Chain A, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus Bound To Inhibitor.
pdb|4GSY|B Chain B, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus Bound To Inhibitor.
pdb|4HDC|A Chain A, Discovery Of Selective And Potent Inhibitors Of
Gram-Positive Bacterial Thymidylate Kinase (Tmk:
Compound 41)
pdb|4HDC|B Chain B, Discovery Of Selective And Potent Inhibitors Of
Gram-Positive Bacterial Thymidylate Kinase (Tmk:
Compound 41)
pdb|4HEJ|A Chain A, Discovery Of Selective And Potent Inhibitors Of
Gram-Positive Bacterial Thymidylate Kinase (Tmk):
Compund 16
pdb|4HEJ|B Chain B, Discovery Of Selective And Potent Inhibitors Of
Gram-Positive Bacterial Thymidylate Kinase (Tmk):
Compund 16
pdb|4HLC|A Chain A, Sulfonylpiperidines As Novel, Antibacterial Inhibitors
Of Gram- Positive Thymidylate Kinase (Tmk): Compound 5
pdb|4HLC|B Chain B, Sulfonylpiperidines As Novel, Antibacterial Inhibitors
Of Gram- Positive Thymidylate Kinase (Tmk): Compound 5
pdb|4HLD|A Chain A, Sulfonylpiperidines As Novel, Antibacterial Inhibitors
Of Gram- Positive Thymidylate Kinase (Tmk): Compound 11
pdb|4HLD|B Chain B, Sulfonylpiperidines As Novel, Antibacterial Inhibitors
Of Gram- Positive Thymidylate Kinase (Tmk): Compound 11
Length = 205
Score = 27.7 bits (60), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 23 GPSGCGKTTLLSCIVNRLRLDHGSI 47
GP G GKTT+++ + +RL D+ I
Sbjct: 9 GPEGSGKTTVINEVYHRLVKDYDVI 33
>pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|B Chain B, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|C Chain C, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|D Chain D, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
Length = 447
Score = 27.7 bits (60), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 17/37 (45%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDI 57
L GP G GKTTL I D IS V++I
Sbjct: 55 LWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEI 91
>pdb|1MAB|B Chain B, Rat Liver F1-Atpase
pdb|2F43|B Chain B, Rat Liver F1-atpase
Length = 479
Score = 27.7 bits (60), Expect = 2.6, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISLSA 51
GL G +G GKT L+ ++N + HG S+ A
Sbjct: 153 GLFGGAGVGKTVLIMELINNVAKAHGGYSVFA 184
>pdb|1NBM|D Chain D, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
pdb|1NBM|F Chain F, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
Length = 480
Score = 27.7 bits (60), Expect = 2.6, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISLSA 51
GL G +G GKT L+ ++N + HG S+ A
Sbjct: 157 GLFGGAGVGKTVLIMELINNVAKAHGGYSVFA 188
>pdb|1NBM|E Chain E, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
Length = 480
Score = 27.7 bits (60), Expect = 2.6, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISLSA 51
GL G +G GKT L+ ++N + HG S+ A
Sbjct: 157 GLFGGAGVGKTVLIMELINNVAKAHGGYSVFA 188
>pdb|1COW|D Chain D, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1COW|E Chain E, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1COW|F Chain F, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1EFR|D Chain D, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1EFR|E Chain E, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1EFR|F Chain F, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1BMF|D Chain D, Bovine Mitochondrial F1-Atpase
pdb|1BMF|E Chain E, Bovine Mitochondrial F1-Atpase
pdb|1BMF|F Chain F, Bovine Mitochondrial F1-Atpase
pdb|1QO1|D Chain D, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1QO1|E Chain E, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1QO1|F Chain F, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1E1Q|D Chain D, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1Q|E Chain E, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1Q|F Chain F, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1R|D Chain D, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1R|E Chain E, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1R|F Chain F, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E79|E Chain E, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1E79|F Chain F, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1H8H|D Chain D, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8H|E Chain E, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8H|F Chain F, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8E|D Chain D, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1H8E|E Chain E, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1H8E|F Chain F, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1OHH|D Chain D, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
pdb|1OHH|E Chain E, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
pdb|1OHH|F Chain F, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
pdb|1W0J|D Chain D, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0J|E Chain E, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0J|F Chain F, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|D Chain D, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|E Chain E, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|F Chain F, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|2CK3|D Chain D, Azide Inhibited Bovine F1-Atpase
pdb|2CK3|E Chain E, Azide Inhibited Bovine F1-Atpase
pdb|2CK3|F Chain F, Azide Inhibited Bovine F1-Atpase
pdb|2JDI|D Chain D, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2JDI|E Chain E, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2JDI|F Chain F, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2JIZ|D Chain D, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|E Chain E, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|F Chain F, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|K Chain K, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|L Chain L, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|M Chain M, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JJ1|D Chain D, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|E Chain E, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|F Chain F, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|K Chain K, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|L Chain L, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|M Chain M, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ2|D Chain D, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|E Chain E, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|F Chain F, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|K Chain K, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|L Chain L, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|M Chain M, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2V7Q|D Chain D, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1.
pdb|2V7Q|E Chain E, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1.
pdb|2V7Q|F Chain F, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1.
pdb|2WSS|D Chain D, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|E Chain E, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|F Chain F, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|M Chain M, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|N Chain N, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|O Chain O, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|1E79|D Chain D, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
Length = 482
Score = 27.7 bits (60), Expect = 2.6, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISLSA 51
GL G +G GKT L+ ++N + HG S+ A
Sbjct: 157 GLFGGAGVGKTVLIMELINNVAKAHGGYSVFA 188
>pdb|4ASU|D Chain D, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
pdb|4ASU|E Chain E, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
pdb|4ASU|F Chain F, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
Length = 480
Score = 27.7 bits (60), Expect = 2.6, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISLSA 51
GL G +G GKT L+ ++N + HG S+ A
Sbjct: 155 GLFGGAGVGKTVLIMELINNVAKAHGGYSVFA 186
>pdb|2XND|D Chain D, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
pdb|2XND|E Chain E, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
pdb|2XND|F Chain F, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
Length = 467
Score = 27.7 bits (60), Expect = 2.6, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISLSA 51
GL G +G GKT L+ ++N + HG S+ A
Sbjct: 145 GLFGGAGVGKTVLIMELINNVAKAHGGYSVFA 176
>pdb|2W6E|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6E|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6E|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6F|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6F|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6F|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6I|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6I|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6I|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6J|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6J|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6J|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6G|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6G|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6G|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6H|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a.
pdb|2W6H|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a.
pdb|2W6H|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a
Length = 528
Score = 27.7 bits (60), Expect = 2.7, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISLSA 51
GL G +G GKT L+ ++N + HG S+ A
Sbjct: 203 GLFGGAGVGKTVLIMELINNVAKAHGGYSVFA 234
>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
pdb|3D8B|B Chain B, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
Length = 357
Score = 27.7 bits (60), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIG 58
L GP G GKT + CI ++ SIS S+ T + +G
Sbjct: 122 LFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVG 159
>pdb|2CCG|A Chain A, Crystal Structure Of His-Tagged S. Aureus Thymidylate
Kinase Complexed With Thymidine Monophosphate (Tmp)
pdb|2CCG|B Chain B, Crystal Structure Of His-Tagged S. Aureus Thymidylate
Kinase Complexed With Thymidine Monophosphate (Tmp)
Length = 225
Score = 27.3 bits (59), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 23 GPSGCGKTTLLSCIVNRLRLDHGSI 47
GP G GKTT+++ + +RL D+ I
Sbjct: 29 GPEGSGKTTVINEVYHRLVKDYDVI 53
>pdb|3LNC|A Chain A, Crystal Structure Of Guanylate Kinase From Anaplasma
Phagocytophilum
pdb|3LNC|B Chain B, Crystal Structure Of Guanylate Kinase From Anaplasma
Phagocytophilum
Length = 231
Score = 27.3 bits (59), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLD-HGSISLSARTVR 55
L PSGCGKTT+ + ++ + + + S+S++ R R
Sbjct: 32 LSSPSGCGKTTVANKLLEKQKNNIVKSVSVTTRAAR 67
>pdb|3B85|A Chain A, Crystal Structure Of Predicted Phosphate
Starvation-Induced Atpase Phoh2 From Corynebacterium
Glutamicum
pdb|3B85|B Chain B, Crystal Structure Of Predicted Phosphate
Starvation-Induced Atpase Phoh2 From Corynebacterium
Glutamicum
Length = 208
Score = 27.3 bits (59), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 6/29 (20%)
Query: 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTL 32
V A NT++FG LGP+G GKT L
Sbjct: 16 VDAIDTNTIVFG------LGPAGSGKTYL 38
>pdb|2XOK|D Chain D, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
pdb|2XOK|E Chain E, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
pdb|2XOK|F Chain F, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
Length = 511
Score = 26.9 bits (58), Expect = 4.1, Method: Composition-based stats.
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISL 49
GL G +G GKT + ++N + HG S+
Sbjct: 187 GLFGGAGVGKTVFIQELINNIAKAHGGFSV 216
>pdb|4B2Q|E Chain E, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|F Chain F, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|EE Chain e, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|FF Chain f, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
Length = 473
Score = 26.9 bits (58), Expect = 4.2, Method: Composition-based stats.
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISL 49
GL G +G GKT + ++N + HG S+
Sbjct: 149 GLFGGAGVGKTVFIQELINNIAKAHGGFSV 178
>pdb|3OEH|D Chain D, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|E Chain E, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|F Chain F, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|M Chain M, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|N Chain N, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|O Chain O, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|V Chain V, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|W Chain W, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|X Chain X, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
Length = 484
Score = 26.9 bits (58), Expect = 4.2, Method: Composition-based stats.
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISL 49
GL G +G GKT + ++N + HG S+
Sbjct: 160 GLFGGAGVGKTVFIQELINNIAKAHGGFSV 189
>pdb|4B2Q|D Chain D, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|DD Chain d, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
Length = 470
Score = 26.9 bits (58), Expect = 4.2, Method: Composition-based stats.
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISL 49
GL G +G GKT + ++N + HG S+
Sbjct: 149 GLFGGAGVGKTVFIQELINNIAKAHGGFSV 178
>pdb|3FKS|D Chain D, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|E Chain E, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|F Chain F, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|M Chain M, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|N Chain N, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|O Chain O, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|V Chain V, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|W Chain W, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|X Chain X, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3OE7|D Chain D, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|E Chain E, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|F Chain F, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|M Chain M, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|N Chain N, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|O Chain O, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|V Chain V, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|W Chain W, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|X Chain X, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OEE|D Chain D, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|E Chain E, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|F Chain F, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|M Chain M, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|N Chain N, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|O Chain O, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|V Chain V, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|W Chain W, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|X Chain X, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OFN|D Chain D, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|E Chain E, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|F Chain F, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|M Chain M, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|N Chain N, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|O Chain O, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|V Chain V, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|W Chain W, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|X Chain X, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
Length = 484
Score = 26.9 bits (58), Expect = 4.2, Method: Composition-based stats.
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISL 49
GL G +G GKT + ++N + HG S+
Sbjct: 160 GLFGGAGVGKTVFIQELINNIAKAHGGFSV 189
>pdb|2HLD|D Chain D, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|E Chain E, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|F Chain F, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|M Chain M, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|N Chain N, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|O Chain O, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|V Chain V, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|W Chain W, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|X Chain X, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2WPD|D Chain D, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|2WPD|E Chain E, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|2WPD|F Chain F, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|3ZRY|D Chain D, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZRY|E Chain E, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZRY|F Chain F, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZIA|D Chain D, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|E Chain E, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|F Chain F, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|N Chain N, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|O Chain O, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|P Chain P, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
Length = 478
Score = 26.9 bits (58), Expect = 4.2, Method: Composition-based stats.
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISL 49
GL G +G GKT + ++N + HG S+
Sbjct: 154 GLFGGAGVGKTVFIQELINNIAKAHGGFSV 183
>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp
Length = 262
Score = 26.6 bits (57), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRL 42
LLGP GCGKT L + ++
Sbjct: 44 LLGPPGCGKTLLAKAVATEAQV 65
>pdb|3HWS|A Chain A, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|B Chain B, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|C Chain C, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|D Chain D, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|E Chain E, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|F Chain F, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
Length = 363
Score = 26.2 bits (56), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 10 NTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYM 60
N V G + L+GP+G GK TLL+ + RL LD A T+ + GY+
Sbjct: 45 NGVELGKSNILLIGPTGSGK-TLLAETLARL-LDVPFTMADATTLTEAGYV 93
>pdb|3HTE|A Chain A, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|B Chain B, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|C Chain C, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|D Chain D, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|E Chain E, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|F Chain F, Crystal Structure Of Nucleotide-Free Hexameric Clpx
Length = 363
Score = 26.2 bits (56), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 10 NTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYM 60
N V G + L+GP+G GK TLL+ + RL LD A T+ + GY+
Sbjct: 45 NGVELGKSNILLIGPTGSGK-TLLAETLARL-LDVPFTMADATTLTEAGYV 93
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 25.8 bits (55), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 30/151 (19%), Positives = 61/151 (40%), Gaps = 29/151 (19%)
Query: 19 YGLLGPSGCGKTTLLSCIVNR--LRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAEDS 76
+ ++GP+G GK+TL + + R + G++ + + + + G G +A
Sbjct: 49 HAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAG---EGIFMAFQY 105
Query: 77 P--------------------SY----LLEYYNCSTLEDVFLYLCEQDQILFSLVGSESA 112
P SY L+ ++ L + + L + + L + +
Sbjct: 106 PVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGF 165
Query: 113 FGGQQRRVSFAVSLIHDPKILILDEPTVGLD 143
GG+++R + +P++ ILDE GLD
Sbjct: 166 SGGEKKRNDILQMAVLEPELCILDESDSGLD 196
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 25.8 bits (55), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 30/151 (19%), Positives = 61/151 (40%), Gaps = 29/151 (19%)
Query: 19 YGLLGPSGCGKTTLLSCIVNR--LRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAEDS 76
+ ++GP+G GK+TL + + R + G++ + + + + G G +A
Sbjct: 30 HAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAG---EGIFMAFQY 86
Query: 77 P--------------------SY----LLEYYNCSTLEDVFLYLCEQDQILFSLVGSESA 112
P SY L+ ++ L + + L + + L + +
Sbjct: 87 PVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGF 146
Query: 113 FGGQQRRVSFAVSLIHDPKILILDEPTVGLD 143
GG+++R + +P++ ILDE GLD
Sbjct: 147 SGGEKKRNDILQMAVLEPELCILDESDSGLD 177
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.139 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,057,183
Number of Sequences: 62578
Number of extensions: 146284
Number of successful extensions: 799
Number of sequences better than 100.0: 141
Number of HSP's better than 100.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 556
Number of HSP's gapped (non-prelim): 200
length of query: 149
length of database: 14,973,337
effective HSP length: 90
effective length of query: 59
effective length of database: 9,341,317
effective search space: 551137703
effective search space used: 551137703
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)