Query psy10767
Match_columns 149
No_of_seqs 160 out of 1827
Neff 8.1
Searched_HMMs 46136
Date Fri Aug 16 17:58:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10767.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10767hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1126 GlnQ ABC-type polar am 100.0 1.2E-44 2.5E-49 270.9 12.2 139 4-147 16-172 (240)
2 COG1116 TauB ABC-type nitrate/ 100.0 4.5E-44 9.8E-49 272.8 10.1 138 4-148 17-167 (248)
3 COG1136 SalX ABC-type antimicr 100.0 3.1E-42 6.7E-47 261.5 13.8 139 4-147 19-178 (226)
4 COG1120 FepC ABC-type cobalami 100.0 2.8E-42 6E-47 266.2 12.0 142 3-147 15-174 (258)
5 COG3839 MalK ABC-type sugar tr 100.0 2.4E-42 5.2E-47 275.3 11.4 137 5-148 18-170 (338)
6 COG1135 AbcC ABC-type metal io 100.0 6.8E-42 1.5E-46 267.1 10.5 139 4-147 20-177 (339)
7 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 3.2E-41 7E-46 259.4 12.8 139 4-147 18-175 (254)
8 COG3842 PotA ABC-type spermidi 100.0 8.9E-42 1.9E-46 273.3 8.9 139 3-148 18-173 (352)
9 COG2884 FtsE Predicted ATPase 100.0 4.7E-41 1E-45 247.2 11.5 140 4-148 16-174 (223)
10 COG1127 Ttg2A ABC-type transpo 100.0 1.8E-40 4E-45 251.5 12.3 140 3-147 21-181 (263)
11 COG1131 CcmA ABC-type multidru 100.0 1.7E-40 3.6E-45 262.3 12.0 140 4-148 19-173 (293)
12 COG3638 ABC-type phosphate/pho 100.0 1.4E-40 3.1E-45 251.5 10.8 140 4-148 18-184 (258)
13 COG1117 PstB ABC-type phosphat 100.0 3.2E-40 7E-45 246.7 11.6 138 4-147 21-185 (253)
14 COG1125 OpuBA ABC-type proline 100.0 1.6E-40 3.4E-45 253.9 10.1 138 4-148 15-172 (309)
15 COG1124 DppF ABC-type dipeptid 100.0 5.8E-40 1.3E-44 249.1 12.3 139 4-147 21-177 (252)
16 TIGR00960 3a0501s02 Type II (G 100.0 1.7E-39 3.6E-44 245.5 12.3 139 4-147 17-174 (216)
17 cd03293 ABC_NrtD_SsuB_transpor 100.0 5E-39 1.1E-43 243.6 12.8 139 4-147 18-167 (220)
18 PRK11650 ugpC glycerol-3-phosp 100.0 2.7E-39 5.8E-44 261.4 11.8 138 4-148 18-171 (356)
19 cd03259 ABC_Carb_Solutes_like 100.0 4E-39 8.8E-44 242.9 11.7 137 4-147 14-166 (213)
20 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 6.1E-39 1.3E-43 242.6 12.5 137 4-147 18-176 (218)
21 PRK11629 lolD lipoprotein tran 100.0 9E-39 2E-43 244.3 13.1 139 4-147 23-181 (233)
22 PRK13537 nodulation ABC transp 100.0 5.6E-39 1.2E-43 254.9 12.4 138 4-148 21-175 (306)
23 TIGR02673 FtsE cell division A 100.0 9.4E-39 2E-43 240.9 12.7 139 4-147 16-173 (214)
24 TIGR02211 LolD_lipo_ex lipopro 100.0 9.4E-39 2E-43 242.0 12.7 137 4-147 19-177 (221)
25 TIGR02314 ABC_MetN D-methionin 100.0 7.3E-39 1.6E-43 257.6 12.6 137 4-147 19-176 (343)
26 TIGR01188 drrA daunorubicin re 100.0 6.4E-39 1.4E-43 254.0 11.8 137 4-147 7-160 (302)
27 cd03226 ABC_cobalt_CbiO_domain 100.0 9.2E-39 2E-43 239.9 12.0 138 4-147 14-162 (205)
28 COG1118 CysA ABC-type sulfate/ 100.0 4.7E-39 1E-43 250.9 10.7 138 4-148 16-174 (345)
29 COG4555 NatA ABC-type Na+ tran 100.0 4E-39 8.7E-44 239.0 9.6 137 5-148 17-170 (245)
30 cd03261 ABC_Org_Solvent_Resist 100.0 1.3E-38 2.8E-43 243.5 12.3 137 4-147 14-172 (235)
31 PRK11432 fbpC ferric transport 100.0 1.2E-38 2.6E-43 257.1 12.7 138 4-148 20-173 (351)
32 cd03235 ABC_Metallic_Cations A 100.0 1.7E-38 3.8E-43 239.5 12.6 141 4-147 13-168 (213)
33 cd03225 ABC_cobalt_CbiO_domain 100.0 1.6E-38 3.5E-43 239.2 12.2 138 4-147 15-170 (211)
34 cd03301 ABC_MalK_N The N-termi 100.0 3.8E-38 8.2E-43 237.5 13.1 139 4-147 14-166 (213)
35 cd03265 ABC_DrrA DrrA is the A 100.0 3E-38 6.6E-43 239.4 12.6 137 4-147 14-167 (220)
36 COG1137 YhbG ABC-type (unclass 100.0 3.4E-39 7.3E-44 239.2 6.9 139 4-147 18-175 (243)
37 TIGR01166 cbiO cobalt transpor 100.0 3.4E-38 7.3E-43 234.3 12.3 138 4-147 6-163 (190)
38 TIGR03265 PhnT2 putative 2-ami 100.0 2.5E-38 5.4E-43 255.5 12.4 138 4-148 18-171 (353)
39 PRK13536 nodulation factor exp 100.0 2.7E-38 5.8E-43 254.2 12.5 138 4-148 55-209 (340)
40 PRK11247 ssuB aliphatic sulfon 100.0 5.4E-38 1.2E-42 243.9 13.7 139 4-147 26-169 (257)
41 cd03268 ABC_BcrA_bacitracin_re 100.0 4.3E-38 9.4E-43 236.5 12.6 137 4-147 14-162 (208)
42 cd03269 ABC_putative_ATPase Th 100.0 3E-38 6.6E-43 237.7 11.7 137 4-147 14-164 (210)
43 cd03231 ABC_CcmA_heme_exporter 100.0 6.2E-38 1.3E-42 235.1 13.3 139 4-147 14-161 (201)
44 TIGR02315 ABC_phnC phosphonate 100.0 6.1E-38 1.3E-42 240.6 13.2 139 4-147 16-181 (243)
45 cd03263 ABC_subfamily_A The AB 100.0 5E-38 1.1E-42 237.9 12.5 137 4-147 16-169 (220)
46 TIGR01186 proV glycine betaine 100.0 3.7E-38 8.1E-43 255.1 12.5 138 4-148 7-166 (363)
47 cd03292 ABC_FtsE_transporter F 100.0 5.8E-38 1.3E-42 236.5 12.7 139 4-147 15-172 (214)
48 cd03266 ABC_NatA_sodium_export 100.0 6.4E-38 1.4E-42 237.0 12.8 137 4-147 19-172 (218)
49 PRK10584 putative ABC transpor 100.0 8E-38 1.7E-42 238.1 13.3 139 4-147 24-182 (228)
50 PRK10908 cell division protein 100.0 7.2E-38 1.6E-42 237.6 13.0 139 4-147 16-173 (222)
51 cd03256 ABC_PhnC_transporter A 100.0 7E-38 1.5E-42 239.8 13.0 139 4-147 15-180 (241)
52 PRK10851 sulfate/thiosulfate t 100.0 4.9E-38 1.1E-42 253.8 12.7 137 4-147 16-172 (353)
53 cd03262 ABC_HisP_GlnQ_permease 100.0 5.8E-38 1.2E-42 236.3 12.1 137 4-147 14-171 (213)
54 PRK11000 maltose/maltodextrin 100.0 4.3E-38 9.4E-43 255.4 12.2 137 4-147 17-169 (369)
55 cd03296 ABC_CysA_sulfate_impor 100.0 6.5E-38 1.4E-42 240.3 12.5 137 4-147 16-172 (239)
56 TIGR03608 L_ocin_972_ABC putat 100.0 7.2E-38 1.6E-42 234.7 12.4 137 4-147 12-170 (206)
57 PRK09452 potA putrescine/sperm 100.0 6E-38 1.3E-42 254.9 12.6 138 4-148 28-181 (375)
58 PRK11248 tauB taurine transpor 100.0 9.7E-38 2.1E-42 242.0 13.1 139 4-147 15-164 (255)
59 TIGR03258 PhnT 2-aminoethylpho 100.0 6.2E-38 1.3E-42 253.9 12.5 138 4-148 19-174 (362)
60 TIGR01288 nodI ATP-binding ABC 100.0 6.7E-38 1.4E-42 248.3 12.4 137 4-147 18-171 (303)
61 cd03294 ABC_Pro_Gly_Bertaine T 100.0 9.7E-38 2.1E-42 243.6 13.1 136 5-147 39-196 (269)
62 cd03219 ABC_Mj1267_LivG_branch 100.0 6.8E-38 1.5E-42 239.4 11.9 137 4-147 14-179 (236)
63 COG1122 CbiO ABC-type cobalt t 100.0 2.5E-38 5.4E-43 242.6 9.5 141 4-148 18-175 (235)
64 PRK13538 cytochrome c biogenes 100.0 1.2E-37 2.5E-42 234.0 12.8 139 4-147 15-165 (204)
65 cd03224 ABC_TM1139_LivF_branch 100.0 1.5E-37 3.3E-42 235.3 13.4 137 4-147 14-168 (222)
66 COG0410 LivF ABC-type branched 100.0 2.2E-37 4.9E-42 233.5 14.2 137 3-146 16-171 (237)
67 cd03260 ABC_PstB_phosphate_tra 100.0 1E-37 2.2E-42 237.3 12.4 138 4-147 14-177 (227)
68 cd03258 ABC_MetN_methionine_tr 100.0 1.3E-37 2.8E-42 237.6 12.9 139 4-147 19-176 (233)
69 TIGR03522 GldA_ABC_ATP gliding 100.0 9.9E-38 2.1E-42 247.1 12.4 137 4-147 16-169 (301)
70 PRK11153 metN DL-methionine tr 100.0 9.7E-38 2.1E-42 251.2 12.6 137 4-147 19-176 (343)
71 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 1.2E-37 2.7E-42 238.4 12.5 137 4-147 15-168 (236)
72 cd03218 ABC_YhbG The ABC trans 100.0 1.5E-37 3.2E-42 237.0 12.9 139 4-147 14-169 (232)
73 PRK11607 potG putrescine trans 100.0 9.6E-38 2.1E-42 253.9 12.4 137 4-147 33-185 (377)
74 cd03245 ABCC_bacteriocin_expor 100.0 2.6E-37 5.5E-42 234.0 13.5 138 4-147 18-176 (220)
75 TIGR01189 ccmA heme ABC export 100.0 1.5E-37 3.2E-42 232.4 11.9 137 4-147 14-163 (198)
76 cd03295 ABC_OpuCA_Osmoprotecti 100.0 1.5E-37 3.3E-42 238.6 12.2 139 4-147 15-171 (242)
77 PRK13637 cbiO cobalt transport 100.0 1.6E-37 3.5E-42 244.5 12.6 140 4-147 21-180 (287)
78 cd03298 ABC_ThiQ_thiamine_tran 100.0 3.4E-37 7.5E-42 232.1 13.6 136 7-147 15-164 (211)
79 cd03264 ABC_drug_resistance_li 100.0 1.7E-37 3.8E-42 233.7 11.9 138 4-147 14-166 (211)
80 TIGR03410 urea_trans_UrtE urea 100.0 4.7E-37 1E-41 234.1 14.1 137 4-147 14-167 (230)
81 PRK10070 glycine betaine trans 100.0 2.1E-37 4.7E-42 253.3 12.8 137 4-147 42-200 (400)
82 PRK09493 glnQ glutamine ABC tr 100.0 3.8E-37 8.3E-42 236.1 13.0 139 4-147 15-172 (240)
83 cd03257 ABC_NikE_OppD_transpor 100.0 4.1E-37 8.8E-42 233.7 12.8 141 4-147 19-181 (228)
84 PRK11831 putative ABC transpor 100.0 4.7E-37 1E-41 239.7 13.2 139 4-147 21-179 (269)
85 PRK09536 btuD corrinoid ABC tr 100.0 3.2E-37 6.8E-42 252.5 12.7 137 4-147 17-175 (402)
86 cd03254 ABCC_Glucan_exporter_l 100.0 5.9E-37 1.3E-41 233.3 13.3 138 4-147 17-175 (229)
87 TIGR01184 ntrCD nitrate transp 100.0 3.8E-37 8.3E-42 235.2 12.2 137 6-147 1-150 (230)
88 TIGR03411 urea_trans_UrtD urea 100.0 4.3E-37 9.3E-42 235.9 12.1 137 4-147 16-179 (242)
89 PRK13638 cbiO cobalt transport 100.0 4E-37 8.6E-42 240.2 12.1 140 4-147 15-172 (271)
90 PRK11124 artP arginine transpo 100.0 4.8E-37 1E-41 235.8 12.4 139 4-147 16-177 (242)
91 PRK13641 cbiO cobalt transport 100.0 5.6E-37 1.2E-41 241.3 12.8 140 4-147 21-181 (287)
92 PRK13540 cytochrome c biogenes 100.0 6E-37 1.3E-41 229.5 12.4 137 4-147 15-163 (200)
93 PRK11264 putative amino-acid A 100.0 5.9E-37 1.3E-41 236.1 12.7 139 4-147 17-180 (250)
94 PRK11614 livF leucine/isoleuci 100.0 1.1E-36 2.3E-41 233.2 14.0 139 4-147 19-173 (237)
95 TIGR02868 CydC thiol reductant 100.0 5.7E-37 1.2E-41 258.1 13.7 137 4-146 349-505 (529)
96 cd03252 ABCC_Hemolysin The ABC 100.0 9.9E-37 2.2E-41 233.2 13.6 138 4-147 16-174 (237)
97 PRK13647 cbiO cobalt transport 100.0 4.4E-37 9.6E-42 240.5 11.9 138 4-147 19-174 (274)
98 cd03230 ABC_DR_subfamily_A Thi 100.0 8E-37 1.7E-41 224.2 12.3 110 4-147 14-131 (173)
99 TIGR00972 3a0107s01c2 phosphat 100.0 9.4E-37 2E-41 234.9 13.3 138 4-147 15-180 (247)
100 cd03229 ABC_Class3 This class 100.0 5.5E-37 1.2E-41 226.0 11.4 112 4-147 14-136 (178)
101 PRK13650 cbiO cobalt transport 100.0 4.6E-37 9.9E-42 241.0 11.6 140 4-147 21-176 (279)
102 PRK11300 livG leucine/isoleuci 100.0 9.1E-37 2E-41 235.7 13.0 139 4-147 19-189 (255)
103 PRK10247 putative ABC transpor 100.0 1.4E-36 3E-41 231.4 13.7 138 4-147 21-173 (225)
104 PRK13646 cbiO cobalt transport 100.0 4.4E-37 9.5E-42 241.8 11.3 140 4-147 21-181 (286)
105 TIGR01277 thiQ thiamine ABC tr 100.0 1.7E-36 3.6E-41 228.9 14.0 138 5-147 13-164 (213)
106 PRK13635 cbiO cobalt transport 100.0 7.6E-37 1.6E-41 239.8 12.6 138 4-147 21-176 (279)
107 TIGR02770 nickel_nikD nickel i 100.0 7.6E-37 1.7E-41 233.3 12.3 140 5-147 1-161 (230)
108 PRK10895 lipopolysaccharide AB 100.0 1.1E-36 2.3E-41 233.7 13.1 139 4-147 17-173 (241)
109 PRK13539 cytochrome c biogenes 100.0 1.2E-36 2.5E-41 229.1 13.0 139 4-147 16-163 (207)
110 PRK13634 cbiO cobalt transport 100.0 6.8E-37 1.5E-41 241.3 12.2 140 4-147 21-181 (290)
111 PRK13643 cbiO cobalt transport 100.0 8.3E-37 1.8E-41 240.5 12.6 140 4-147 20-180 (288)
112 PRK10418 nikD nickel transport 100.0 8.6E-37 1.9E-41 236.2 12.3 140 4-147 17-176 (254)
113 COG3840 ThiQ ABC-type thiamine 100.0 5.1E-37 1.1E-41 224.9 10.3 132 9-147 18-165 (231)
114 PRK10575 iron-hydroxamate tran 100.0 9.8E-37 2.1E-41 237.3 12.5 139 4-147 25-183 (265)
115 PRK10619 histidine/lysine/argi 100.0 1.2E-36 2.6E-41 235.7 12.9 139 4-147 19-188 (257)
116 PRK11231 fecE iron-dicitrate t 100.0 1.4E-36 3E-41 235.1 13.2 139 4-147 16-174 (255)
117 PRK13548 hmuV hemin importer A 100.0 1.9E-36 4E-41 235.0 14.0 139 4-147 16-176 (258)
118 PRK14250 phosphate ABC transpo 100.0 1.7E-36 3.7E-41 232.9 13.5 138 4-147 17-167 (241)
119 TIGR03005 ectoine_ehuA ectoine 100.0 1.5E-36 3.3E-41 234.4 13.1 139 4-147 14-182 (252)
120 PRK11144 modC molybdate transp 100.0 1.1E-36 2.5E-41 245.8 12.9 133 8-147 16-164 (352)
121 PRK13649 cbiO cobalt transport 100.0 7.3E-37 1.6E-41 239.6 11.4 140 4-147 21-181 (280)
122 cd03215 ABC_Carb_Monos_II This 100.0 9.7E-37 2.1E-41 225.4 11.2 117 5-148 15-141 (182)
123 TIGR02769 nickel_nikE nickel i 100.0 1.7E-36 3.7E-41 236.0 13.1 141 4-147 25-186 (265)
124 PRK15079 oligopeptide ABC tran 100.0 1.3E-36 2.8E-41 243.7 12.6 139 4-147 35-197 (331)
125 PRK10253 iron-enterobactin tra 100.0 2E-36 4.4E-41 235.5 13.4 139 4-147 21-179 (265)
126 TIGR03740 galliderm_ABC gallid 100.0 2E-36 4.3E-41 229.8 12.9 137 4-147 14-160 (223)
127 PRK13632 cbiO cobalt transport 100.0 1.6E-36 3.4E-41 236.9 12.3 138 4-147 23-178 (271)
128 PRK13651 cobalt transporter AT 100.0 1.4E-36 3E-41 241.1 12.1 140 4-147 21-201 (305)
129 cd03251 ABCC_MsbA MsbA is an e 100.0 3.2E-36 7E-41 229.9 13.7 138 4-147 16-174 (234)
130 PRK13644 cbiO cobalt transport 100.0 1.3E-36 2.9E-41 237.8 11.7 140 4-147 16-172 (274)
131 cd03246 ABCC_Protease_Secretio 100.0 1.6E-36 3.5E-41 222.6 11.4 108 4-147 16-132 (173)
132 cd03244 ABCC_MRP_domain2 Domai 100.0 3.3E-36 7.2E-41 228.0 13.5 137 4-147 18-175 (221)
133 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 2.5E-36 5.4E-41 231.2 12.8 138 4-147 17-175 (238)
134 PRK13636 cbiO cobalt transport 100.0 2E-36 4.3E-41 237.8 12.6 140 4-147 20-177 (283)
135 PRK15112 antimicrobial peptide 100.0 2.3E-36 4.9E-41 235.6 12.8 141 4-147 27-185 (267)
136 PRK14247 phosphate ABC transpo 100.0 2.1E-36 4.6E-41 233.2 12.5 139 4-147 17-182 (250)
137 TIGR03415 ABC_choXWV_ATP choli 100.0 1.6E-36 3.5E-41 246.8 12.3 137 4-147 38-200 (382)
138 TIGR01978 sufC FeS assembly AT 100.0 3E-36 6.4E-41 231.1 13.0 139 4-147 14-180 (243)
139 PRK11174 cysteine/glutathione 100.0 3E-36 6.5E-41 256.5 14.2 137 4-147 364-521 (588)
140 PRK13652 cbiO cobalt transport 100.0 3E-36 6.5E-41 236.1 13.1 140 4-147 18-173 (277)
141 cd03223 ABCD_peroxisomal_ALDP 100.0 3E-36 6.5E-41 220.1 12.2 113 4-147 15-127 (166)
142 PRK10771 thiQ thiamine transpo 100.0 4.4E-36 9.6E-41 229.3 13.6 134 7-147 16-165 (232)
143 cd03250 ABCC_MRP_domain1 Domai 100.0 4.4E-36 9.5E-41 225.2 13.3 133 4-147 19-163 (204)
144 PRK13543 cytochrome c biogenes 100.0 3.1E-36 6.7E-41 227.8 12.5 137 4-147 25-173 (214)
145 cd03297 ABC_ModC_molybdenum_tr 100.0 3.8E-36 8.2E-41 227.0 13.0 134 8-147 16-167 (214)
146 PRK14241 phosphate transporter 100.0 3.8E-36 8.2E-41 233.0 13.3 139 4-147 18-184 (258)
147 TIGR02324 CP_lyasePhnL phospho 100.0 3.6E-36 7.7E-41 228.4 12.7 139 4-147 22-185 (224)
148 TIGR02142 modC_ABC molybdenum 100.0 2.6E-36 5.6E-41 243.8 12.7 133 8-147 15-167 (354)
149 PRK14267 phosphate ABC transpo 100.0 2.8E-36 6.1E-41 232.8 12.3 139 4-147 18-185 (253)
150 cd03233 ABC_PDR_domain1 The pl 100.0 2.3E-36 5E-41 226.9 11.3 124 4-148 21-155 (202)
151 cd03253 ABCC_ATM1_transporter 100.0 5.2E-36 1.1E-40 229.0 13.4 138 4-147 15-173 (236)
152 PRK13648 cbiO cobalt transport 100.0 2.9E-36 6.4E-41 235.1 12.2 140 4-147 23-178 (269)
153 PRK14242 phosphate transporter 100.0 3.4E-36 7.4E-41 232.4 12.4 138 4-147 20-185 (253)
154 TIGR03873 F420-0_ABC_ATP propo 100.0 5.5E-36 1.2E-40 231.8 13.6 139 4-147 15-173 (256)
155 PRK11701 phnK phosphonate C-P 100.0 4.4E-36 9.5E-41 232.6 13.0 141 4-147 20-187 (258)
156 cd03267 ABC_NatA_like Similar 100.0 3.2E-36 6.9E-41 230.9 12.0 138 4-147 35-189 (236)
157 PRK13645 cbiO cobalt transport 100.0 3.3E-36 7.1E-41 237.0 12.4 140 4-147 25-186 (289)
158 TIGR02982 heterocyst_DevA ABC 100.0 3.8E-36 8.2E-41 228.0 12.2 137 4-147 19-177 (220)
159 cd03247 ABCC_cytochrome_bd The 100.0 3.8E-36 8.1E-41 221.5 11.6 111 4-147 16-134 (178)
160 PRK11022 dppD dipeptide transp 100.0 2.5E-36 5.3E-41 241.7 11.4 141 4-147 21-189 (326)
161 cd03290 ABCC_SUR1_N The SUR do 100.0 1.1E-35 2.3E-40 225.1 14.3 137 4-147 15-176 (218)
162 COG2274 SunT ABC-type bacterio 100.0 3.6E-36 7.9E-41 259.6 13.1 138 4-147 487-645 (709)
163 PRK11308 dppF dipeptide transp 100.0 3.1E-36 6.8E-41 241.1 11.8 139 4-147 29-190 (327)
164 cd03228 ABCC_MRP_Like The MRP 100.0 4E-36 8.7E-41 220.2 11.4 108 4-147 16-132 (171)
165 cd03234 ABCG_White The White s 100.0 9.1E-36 2E-40 226.7 13.5 139 4-147 21-179 (226)
166 PRK13541 cytochrome c biogenes 100.0 6.5E-36 1.4E-40 223.1 12.4 135 6-147 16-159 (195)
167 PRK13633 cobalt transporter AT 100.0 4E-36 8.6E-41 235.7 11.7 138 4-147 24-180 (280)
168 cd03300 ABC_PotA_N PotA is an 100.0 6E-36 1.3E-40 228.7 12.3 139 4-147 14-166 (232)
169 PRK13631 cbiO cobalt transport 100.0 3.6E-36 7.7E-41 240.2 11.5 140 4-147 40-212 (320)
170 cd03369 ABCC_NFT1 Domain 2 of 100.0 8.9E-36 1.9E-40 223.9 12.8 131 4-147 22-161 (207)
171 COG4175 ProV ABC-type proline/ 100.0 1.7E-36 3.8E-41 237.5 9.2 139 2-147 40-200 (386)
172 PRK14259 phosphate ABC transpo 100.0 6.1E-36 1.3E-40 233.4 12.3 138 4-147 27-190 (269)
173 TIGR02323 CP_lyasePhnK phospho 100.0 6.6E-36 1.4E-40 230.8 12.1 141 4-147 17-184 (253)
174 cd03299 ABC_ModC_like Archeal 100.0 9.8E-36 2.1E-40 228.0 12.9 136 5-147 14-165 (235)
175 PRK15439 autoinducer 2 ABC tra 100.0 7E-36 1.5E-40 251.1 13.2 137 4-147 25-176 (510)
176 PRK10762 D-ribose transporter 100.0 4E-36 8.8E-41 251.9 11.6 137 4-147 18-177 (501)
177 PRK14273 phosphate ABC transpo 100.0 9.2E-36 2E-40 230.3 12.6 138 4-147 21-186 (254)
178 PRK10744 pstB phosphate transp 100.0 1.1E-35 2.3E-40 230.8 13.0 138 4-147 27-192 (260)
179 PRK14269 phosphate ABC transpo 100.0 9.2E-36 2E-40 229.4 12.4 138 4-147 16-178 (246)
180 PRK13642 cbiO cobalt transport 100.0 8.5E-36 1.8E-40 233.5 12.4 138 4-147 21-176 (277)
181 cd03213 ABCG_EPDR ABCG transpo 100.0 7.4E-36 1.6E-40 222.9 11.5 117 4-147 23-147 (194)
182 PRK14268 phosphate ABC transpo 100.0 8.6E-36 1.9E-40 231.1 12.3 138 4-147 26-190 (258)
183 PRK09473 oppD oligopeptide tra 100.0 1.2E-35 2.5E-40 238.1 13.2 141 4-147 30-197 (330)
184 PRK14256 phosphate ABC transpo 100.0 1.9E-35 4.1E-40 228.2 13.9 139 4-147 18-184 (252)
185 PRK09984 phosphonate/organopho 100.0 1.2E-35 2.5E-40 230.7 12.7 137 4-147 18-188 (262)
186 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 7.1E-36 1.5E-40 258.3 12.7 137 4-147 467-624 (686)
187 COG0411 LivG ABC-type branched 100.0 2.3E-36 4.9E-41 229.6 8.5 136 4-146 18-184 (250)
188 PRK13639 cbiO cobalt transport 100.0 7.8E-36 1.7E-40 233.5 11.7 138 4-147 16-173 (275)
189 PRK14235 phosphate transporter 100.0 1.3E-35 2.9E-40 231.2 12.8 138 4-147 33-199 (267)
190 PRK09700 D-allose transporter 100.0 7.5E-36 1.6E-40 250.7 11.9 137 4-147 19-181 (510)
191 cd03216 ABC_Carb_Monos_I This 100.0 7.3E-36 1.6E-40 217.5 10.3 104 4-147 14-118 (163)
192 KOG0058|consensus 100.0 7.8E-36 1.7E-40 252.9 12.0 137 4-146 482-639 (716)
193 COG4181 Predicted ABC-type tra 100.0 1.5E-35 3.2E-40 215.6 11.8 135 5-146 25-181 (228)
194 PRK15056 manganese/iron transp 100.0 1E-35 2.2E-40 232.4 11.6 139 4-147 21-178 (272)
195 PRK13640 cbiO cobalt transport 100.0 9E-36 2E-40 234.0 11.2 138 4-147 21-179 (282)
196 PRK09544 znuC high-affinity zi 100.0 1.7E-35 3.8E-40 229.0 12.4 136 4-147 18-156 (251)
197 PRK10790 putative multidrug tr 100.0 1.8E-35 4E-40 252.0 13.6 137 4-147 355-512 (592)
198 PRK13549 xylose transporter AT 100.0 1E-35 2.2E-40 249.7 11.8 137 4-147 19-179 (506)
199 PRK14251 phosphate ABC transpo 100.0 2.1E-35 4.6E-40 227.7 12.6 138 4-147 18-183 (251)
200 PRK14254 phosphate ABC transpo 100.0 3.1E-35 6.8E-40 231.3 13.8 138 4-147 53-216 (285)
201 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 1.7E-35 3.6E-40 256.7 13.4 138 4-147 493-651 (710)
202 PRK11176 lipid transporter ATP 100.0 2E-35 4.4E-40 251.0 13.6 138 4-147 357-516 (582)
203 cd03232 ABC_PDR_domain2 The pl 100.0 1.6E-35 3.4E-40 220.7 11.4 117 4-147 21-144 (192)
204 PF00005 ABC_tran: ABC transpo 100.0 3.1E-35 6.6E-40 207.2 12.2 123 6-140 1-137 (137)
205 TIGR00968 3a0106s01 sulfate AB 100.0 2.8E-35 6E-40 225.7 12.8 137 4-147 14-166 (237)
206 PRK15093 antimicrobial peptide 100.0 1.6E-35 3.5E-40 237.3 11.8 141 4-147 21-194 (330)
207 COG4152 ABC-type uncharacteriz 100.0 6.7E-36 1.4E-40 227.4 9.1 136 5-147 17-166 (300)
208 PRK10982 galactose/methyl gala 100.0 1.6E-35 3.4E-40 247.8 12.2 137 4-147 12-170 (491)
209 PRK14270 phosphate ABC transpo 100.0 2.9E-35 6.3E-40 227.1 12.7 138 4-147 18-183 (251)
210 cd03214 ABC_Iron-Siderophores_ 100.0 9.5E-36 2.1E-40 219.8 9.5 112 4-147 13-133 (180)
211 PRK14248 phosphate ABC transpo 100.0 2.9E-35 6.4E-40 229.2 12.8 136 4-147 35-200 (268)
212 PRK14240 phosphate transporter 100.0 4.5E-35 9.8E-40 225.8 13.5 136 4-147 17-182 (250)
213 PRK14274 phosphate ABC transpo 100.0 2.9E-35 6.3E-40 228.2 12.2 138 4-147 26-191 (259)
214 PRK14262 phosphate ABC transpo 100.0 3.4E-35 7.4E-40 226.4 12.3 138 4-147 17-182 (250)
215 TIGR02857 CydD thiol reductant 100.0 3.9E-35 8.4E-40 247.0 13.7 138 4-147 336-494 (529)
216 PRK10419 nikE nickel transport 100.0 4.4E-35 9.6E-40 228.5 13.0 141 4-147 26-187 (268)
217 cd03248 ABCC_TAP TAP, the Tran 100.0 3E-35 6.6E-40 223.6 11.8 136 4-147 28-186 (226)
218 PRK14239 phosphate transporter 100.0 4.5E-35 9.8E-40 225.9 12.6 138 4-147 19-184 (252)
219 PRK14272 phosphate ABC transpo 100.0 6.2E-35 1.3E-39 225.1 13.4 137 4-147 18-184 (252)
220 PRK14244 phosphate ABC transpo 100.0 3.5E-35 7.5E-40 226.7 12.0 138 4-147 19-185 (251)
221 PRK11288 araG L-arabinose tran 100.0 2.5E-35 5.5E-40 247.1 12.0 139 4-147 18-176 (501)
222 PRK11160 cysteine/glutathione 100.0 3.8E-35 8.3E-40 249.6 13.2 138 4-147 354-511 (574)
223 PRK09580 sufC cysteine desulfu 100.0 4.7E-35 1E-39 225.2 12.3 139 4-147 15-181 (248)
224 PRK09700 D-allose transporter 100.0 2.7E-35 5.9E-40 247.3 11.8 141 5-147 278-445 (510)
225 COG1132 MdlB ABC-type multidru 100.0 3.8E-35 8.3E-40 249.0 12.8 137 4-146 343-500 (567)
226 TIGR02633 xylG D-xylose ABC tr 100.0 3.1E-35 6.8E-40 246.3 11.8 139 4-147 15-177 (500)
227 PRK14253 phosphate ABC transpo 100.0 7.5E-35 1.6E-39 224.4 13.0 138 4-147 17-181 (249)
228 PRK10261 glutathione transport 100.0 5.3E-35 1.2E-39 250.8 13.4 141 4-147 338-499 (623)
229 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 3.9E-35 8.4E-40 209.9 10.5 93 4-147 14-106 (144)
230 TIGR00958 3a01208 Conjugate Tr 100.0 6.4E-35 1.4E-39 253.4 13.9 137 4-146 495-652 (711)
231 PRK14255 phosphate ABC transpo 100.0 1.1E-34 2.3E-39 223.9 13.7 138 4-147 19-184 (252)
232 PRK14245 phosphate ABC transpo 100.0 6.1E-35 1.3E-39 225.2 12.3 138 4-147 17-182 (250)
233 PRK14249 phosphate ABC transpo 100.0 8.2E-35 1.8E-39 224.6 12.8 138 4-147 18-183 (251)
234 PRK14275 phosphate ABC transpo 100.0 7.4E-35 1.6E-39 229.3 12.6 138 4-147 53-218 (286)
235 TIGR03375 type_I_sec_LssB type 100.0 7.2E-35 1.6E-39 252.3 13.7 138 4-147 479-637 (694)
236 PRK13657 cyclic beta-1,2-gluca 100.0 9.1E-35 2E-39 247.6 14.1 138 4-147 349-507 (588)
237 PRK14260 phosphate ABC transpo 100.0 9.1E-35 2E-39 225.5 12.8 138 4-147 21-186 (259)
238 TIGR01193 bacteriocin_ABC ABC- 100.0 6E-35 1.3E-39 253.3 13.1 138 4-147 488-647 (708)
239 PRK14243 phosphate transporter 100.0 9.2E-35 2E-39 226.2 12.8 138 4-147 24-187 (264)
240 PRK10261 glutathione transport 100.0 5.5E-35 1.2E-39 250.7 12.6 141 4-147 30-204 (623)
241 cd03217 ABC_FeS_Assembly ABC-t 100.0 7.7E-35 1.7E-39 218.3 11.8 115 4-147 14-140 (200)
242 TIGR02203 MsbA_lipidA lipid A 100.0 5.6E-35 1.2E-39 247.7 12.4 138 4-147 346-505 (571)
243 COG4525 TauB ABC-type taurine 100.0 1.7E-35 3.7E-40 219.2 8.1 138 4-148 19-169 (259)
244 cd03237 ABC_RNaseL_inhibitor_d 100.0 5.6E-35 1.2E-39 225.7 11.3 133 5-147 9-151 (246)
245 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 6.3E-35 1.4E-39 222.3 11.3 134 4-147 36-178 (224)
246 PRK14263 phosphate ABC transpo 100.0 1.3E-34 2.9E-39 225.1 13.3 138 4-147 22-185 (261)
247 PRK13547 hmuV hemin importer A 100.0 1.1E-34 2.3E-39 227.1 12.8 139 4-147 15-190 (272)
248 PRK14237 phosphate transporter 100.0 1.2E-34 2.7E-39 225.8 13.1 138 4-147 34-199 (267)
249 PRK15134 microcin C ABC transp 100.0 5.3E-35 1.1E-39 246.6 11.8 141 4-147 23-192 (529)
250 PRK03695 vitamin B12-transport 100.0 1.1E-34 2.5E-39 223.9 12.6 137 5-147 11-169 (248)
251 PRK14265 phosphate ABC transpo 100.0 1.3E-34 2.9E-39 226.5 13.1 138 4-147 34-197 (274)
252 COG4148 ModC ABC-type molybdat 100.0 4.2E-35 9.2E-40 226.6 10.0 133 8-147 16-164 (352)
253 PRK14236 phosphate transporter 100.0 1.5E-34 3.2E-39 225.9 13.1 138 4-147 39-204 (272)
254 KOG0057|consensus 100.0 7.9E-35 1.7E-39 240.6 12.0 136 4-146 366-522 (591)
255 PRK14271 phosphate ABC transpo 100.0 9.3E-35 2E-39 227.7 11.8 138 4-147 35-199 (276)
256 CHL00131 ycf16 sulfate ABC tra 100.0 1.5E-34 3.3E-39 223.0 12.7 138 4-147 21-187 (252)
257 PRK10762 D-ribose transporter 100.0 7.5E-35 1.6E-39 244.3 11.8 141 5-147 267-431 (501)
258 PRK11288 araG L-arabinose tran 100.0 6.2E-35 1.3E-39 244.7 11.3 141 5-147 268-432 (501)
259 COG4619 ABC-type uncharacteriz 100.0 2.5E-35 5.5E-40 213.8 7.7 138 3-148 16-170 (223)
260 TIGR03269 met_CoM_red_A2 methy 100.0 6.8E-35 1.5E-39 245.4 11.5 139 4-147 298-463 (520)
261 TIGR01842 type_I_sec_PrtD type 100.0 1.7E-34 3.7E-39 244.1 13.9 138 4-147 332-490 (544)
262 cd03288 ABCC_SUR2 The SUR doma 100.0 1.9E-34 4.2E-39 223.5 13.1 137 4-147 35-192 (257)
263 cd03289 ABCC_CFTR2 The CFTR su 100.0 2.2E-34 4.8E-39 225.6 13.6 136 4-147 18-174 (275)
264 PRK10789 putative multidrug tr 100.0 1.3E-34 2.9E-39 246.0 12.9 138 4-147 329-487 (569)
265 PRK14238 phosphate transporter 100.0 3.9E-34 8.4E-39 223.5 14.4 136 4-147 38-203 (271)
266 PRK13549 xylose transporter AT 100.0 9.4E-35 2E-39 243.9 11.7 142 4-147 276-441 (506)
267 PRK11819 putative ABC transpor 100.0 1.2E-34 2.6E-39 245.8 12.4 137 4-147 21-199 (556)
268 PRK14258 phosphate ABC transpo 100.0 2E-34 4.4E-39 223.9 12.5 138 4-147 21-186 (261)
269 PRK14261 phosphate ABC transpo 100.0 2.4E-34 5.2E-39 222.2 12.8 138 4-147 20-185 (253)
270 COG1123 ATPase components of v 100.0 1E-34 2.2E-39 242.0 11.4 139 4-147 305-465 (539)
271 KOG0055|consensus 100.0 7.9E-35 1.7E-39 257.9 11.1 138 4-147 367-525 (1228)
272 PRK15134 microcin C ABC transp 100.0 2.2E-34 4.8E-39 242.8 13.2 140 4-147 300-461 (529)
273 COG4988 CydD ABC-type transpor 100.0 3.3E-34 7.1E-39 238.7 13.7 137 4-146 335-491 (559)
274 PRK10938 putative molybdenum t 100.0 1.4E-34 2.9E-39 242.0 11.5 142 4-147 17-171 (490)
275 COG0444 DppD ABC-type dipeptid 100.0 2.2E-34 4.9E-39 226.3 11.8 139 4-147 19-189 (316)
276 PRK15064 ABC transporter ATP-b 100.0 3E-34 6.5E-39 242.0 13.1 137 4-147 15-191 (530)
277 PRK15439 autoinducer 2 ABC tra 100.0 2.1E-34 4.6E-39 242.1 12.1 142 5-148 278-440 (510)
278 cd03291 ABCC_CFTR1 The CFTR su 100.0 7.3E-34 1.6E-38 223.4 14.3 133 4-147 51-195 (282)
279 PRK14266 phosphate ABC transpo 100.0 3.6E-34 7.7E-39 220.8 12.3 138 4-147 17-182 (250)
280 PRK14246 phosphate ABC transpo 100.0 4.2E-34 9E-39 221.9 12.7 139 4-147 24-189 (257)
281 PRK14264 phosphate ABC transpo 100.0 4.3E-34 9.4E-39 226.7 13.0 138 4-147 59-236 (305)
282 TIGR03771 anch_rpt_ABC anchore 100.0 2.7E-34 5.9E-39 218.5 11.3 132 11-147 1-149 (223)
283 PRK15064 ABC transporter ATP-b 100.0 3.8E-34 8.3E-39 241.4 13.4 139 4-147 333-474 (530)
284 TIGR02204 MsbA_rel ABC transpo 100.0 3.5E-34 7.6E-39 243.1 13.1 138 4-147 354-512 (576)
285 TIGR02633 xylG D-xylose ABC tr 100.0 2.5E-34 5.4E-39 240.9 11.6 142 4-147 274-439 (500)
286 PRK10522 multidrug transporter 100.0 3.1E-34 6.8E-39 242.7 12.0 134 4-147 337-485 (547)
287 PRK13546 teichoic acids export 100.0 5E-34 1.1E-38 222.4 12.1 133 4-147 38-179 (264)
288 TIGR03269 met_CoM_red_A2 methy 100.0 3.3E-34 7.1E-39 241.2 12.0 140 4-147 14-204 (520)
289 PRK10982 galactose/methyl gala 100.0 3E-34 6.4E-39 240.1 11.3 143 4-148 262-428 (491)
290 TIGR01192 chvA glucan exporter 100.0 7.4E-34 1.6E-38 242.2 13.6 138 4-147 349-507 (585)
291 PRK14257 phosphate ABC transpo 100.0 5.1E-34 1.1E-38 228.5 11.7 136 4-147 96-261 (329)
292 PRK15177 Vi polysaccharide exp 100.0 6.1E-34 1.3E-38 215.5 11.4 132 4-147 1-140 (213)
293 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 6.1E-34 1.3E-38 241.3 12.6 137 4-147 19-197 (552)
294 cd03222 ABC_RNaseL_inhibitor T 100.0 4E-34 8.8E-39 211.2 10.0 93 5-147 15-107 (177)
295 COG4598 HisP ABC-type histidin 100.0 3.6E-34 7.9E-39 210.0 9.3 137 5-146 21-187 (256)
296 PRK14252 phosphate ABC transpo 100.0 1.3E-33 2.8E-38 219.6 12.9 136 4-147 30-197 (265)
297 TIGR01846 type_I_sec_HlyB type 100.0 1E-33 2.2E-38 245.3 13.1 138 4-147 471-629 (694)
298 TIGR01194 cyc_pep_trnsptr cycl 100.0 6.4E-34 1.4E-38 241.3 11.2 135 4-147 356-506 (555)
299 PTZ00265 multidrug resistance 100.0 9.4E-34 2E-38 260.1 13.0 137 4-146 1182-1393(1466)
300 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 9.1E-34 2E-38 240.2 11.4 138 4-147 336-479 (552)
301 COG1123 ATPase components of v 100.0 8E-34 1.7E-38 236.6 10.9 144 4-147 23-190 (539)
302 PRK11819 putative ABC transpor 100.0 1.1E-33 2.3E-38 240.0 11.7 138 4-147 338-481 (556)
303 COG4608 AppF ABC-type oligopep 100.0 7.8E-34 1.7E-38 219.0 9.4 115 4-147 27-145 (268)
304 PLN03211 ABC transporter G-25; 100.0 3.2E-33 6.8E-38 240.9 12.8 139 4-147 82-242 (659)
305 TIGR01257 rim_protein retinal- 100.0 1.9E-33 4.1E-38 261.4 11.7 138 4-148 1953-2107(2272)
306 COG3845 ABC-type uncharacteriz 100.0 3.9E-33 8.5E-38 228.4 12.0 136 4-146 18-175 (501)
307 PRK13409 putative ATPase RIL; 100.0 3.7E-33 8.1E-38 238.0 12.4 133 4-147 353-489 (590)
308 PRK10938 putative molybdenum t 100.0 1.5E-33 3.3E-38 235.6 9.8 141 4-147 274-437 (490)
309 COG1129 MglA ABC-type sugar tr 100.0 5.2E-33 1.1E-37 230.3 12.8 136 4-146 22-180 (500)
310 PRK10636 putative ABC transpor 100.0 3.4E-33 7.4E-38 240.2 12.1 137 4-147 326-466 (638)
311 TIGR01257 rim_protein retinal- 100.0 2.8E-33 6.1E-38 260.3 12.4 140 4-148 944-1098(2272)
312 PRK11147 ABC transporter ATPas 100.0 5.1E-33 1.1E-37 239.0 12.8 136 4-147 333-476 (635)
313 TIGR00954 3a01203 Peroxysomal 100.0 8.1E-33 1.8E-37 238.6 13.2 136 4-147 466-618 (659)
314 PRK10636 putative ABC transpor 100.0 5.7E-33 1.2E-37 238.8 11.8 142 4-147 15-185 (638)
315 PLN03232 ABC transporter C fam 100.0 6.9E-33 1.5E-37 255.2 12.1 136 4-146 1250-1406(1495)
316 COG4559 ABC-type hemin transpo 100.0 1.4E-32 3.1E-37 205.6 10.9 137 5-146 16-176 (259)
317 PRK13545 tagH teichoic acids e 100.0 1.4E-32 3.1E-37 229.8 12.2 133 4-147 38-179 (549)
318 cd00267 ABC_ATPase ABC (ATP-bi 100.0 1.6E-32 3.5E-37 198.2 10.9 95 4-147 13-116 (157)
319 PLN03130 ABC transporter C fam 100.0 1.2E-32 2.7E-37 254.5 12.7 136 4-146 1253-1409(1622)
320 PTZ00265 multidrug resistance 100.0 1.6E-32 3.5E-37 251.9 12.1 138 4-147 399-615 (1466)
321 PLN03073 ABC transporter F fam 100.0 3.3E-32 7.2E-37 236.2 13.4 138 4-147 523-663 (718)
322 cd03236 ABC_RNaseL_inhibitor_d 100.0 1.1E-32 2.4E-37 213.9 9.1 136 4-147 15-175 (255)
323 TIGR00957 MRP_assoc_pro multi 100.0 2.5E-32 5.4E-37 251.9 12.3 136 4-146 1300-1456(1522)
324 COG4604 CeuD ABC-type enteroch 100.0 8.6E-33 1.9E-37 204.9 7.2 136 3-145 14-169 (252)
325 PRK11147 ABC transporter ATPas 100.0 4.3E-32 9.2E-37 233.3 12.5 141 4-147 17-192 (635)
326 TIGR01187 potA spermidine/putr 100.0 2.4E-32 5.2E-37 218.5 9.2 120 21-147 1-136 (325)
327 PTZ00243 ABC transporter; Prov 100.0 6.6E-32 1.4E-36 249.2 13.4 136 4-146 1324-1481(1560)
328 KOG0055|consensus 100.0 4.7E-32 1E-36 240.4 11.9 137 4-146 1004-1161(1228)
329 TIGR00955 3a01204 The Eye Pigm 100.0 2.9E-32 6.3E-37 233.7 10.2 139 4-147 39-202 (617)
330 PRK10535 macrolide transporter 100.0 1.2E-31 2.5E-36 231.1 13.5 137 4-147 22-180 (648)
331 COG4161 ArtP ABC-type arginine 100.0 4.4E-32 9.5E-37 196.4 8.6 139 2-145 14-175 (242)
332 COG4618 ArpD ABC-type protease 100.0 1.8E-31 3.9E-36 219.4 12.5 137 3-145 349-506 (580)
333 COG1119 ModF ABC-type molybden 100.0 3.6E-32 7.9E-37 206.9 7.8 139 4-147 45-207 (257)
334 COG0488 Uup ATPase components 100.0 1.7E-31 3.7E-36 224.5 12.3 138 3-147 16-189 (530)
335 KOG0056|consensus 100.0 7.2E-32 1.6E-36 221.6 9.6 137 4-146 552-709 (790)
336 COG4586 ABC-type uncharacteriz 100.0 5.2E-32 1.1E-36 208.8 8.1 142 4-147 38-192 (325)
337 cd03238 ABC_UvrA The excision 100.0 1E-31 2.2E-36 198.3 9.2 107 4-147 9-125 (176)
338 COG4987 CydC ABC-type transpor 100.0 1.8E-31 3.8E-36 220.6 10.6 138 4-147 352-510 (573)
339 PRK13409 putative ATPase RIL; 100.0 7.8E-32 1.7E-36 229.9 8.5 136 4-147 88-248 (590)
340 TIGR00956 3a01205 Pleiotropic 100.0 2.1E-31 4.6E-36 244.0 11.7 139 4-147 777-938 (1394)
341 COG4133 CcmA ABC-type transpor 100.0 1.3E-31 2.8E-36 196.8 7.7 137 3-146 15-165 (209)
342 COG4172 ABC-type uncharacteriz 100.0 4.1E-31 8.9E-36 212.9 10.7 138 4-147 301-462 (534)
343 COG4778 PhnL ABC-type phosphon 100.0 1.8E-31 4E-36 194.2 7.8 139 4-147 25-188 (235)
344 COG4167 SapF ABC-type antimicr 100.0 7E-31 1.5E-35 193.3 9.7 141 5-148 28-186 (267)
345 TIGR01271 CFTR_protein cystic 100.0 1.6E-30 3.4E-35 239.6 13.8 135 4-146 1233-1388(1490)
346 TIGR01271 CFTR_protein cystic 100.0 1.8E-30 3.9E-35 239.2 13.8 135 4-148 440-585 (1490)
347 PLN03140 ABC transporter G fam 100.0 1.2E-30 2.6E-35 239.3 12.3 139 4-147 894-1055(1470)
348 TIGR00956 3a01205 Pleiotropic 100.0 1.7E-30 3.7E-35 238.1 11.8 139 4-147 75-245 (1394)
349 COG4136 ABC-type uncharacteriz 100.0 9.4E-31 2E-35 187.3 7.5 136 5-147 17-170 (213)
350 COG0396 sufC Cysteine desulfur 100.0 4.4E-30 9.4E-35 193.9 11.3 137 4-146 18-179 (251)
351 TIGR00957 MRP_assoc_pro multi 100.0 4.5E-30 9.7E-35 237.0 13.4 134 4-147 652-796 (1522)
352 COG1101 PhnK ABC-type uncharac 100.0 3.1E-30 6.6E-35 193.4 9.9 140 3-147 19-184 (263)
353 PLN03130 ABC transporter C fam 100.0 3.7E-30 8.1E-35 238.2 12.2 132 4-146 631-775 (1622)
354 PLN03232 ABC transporter C fam 100.0 7.3E-30 1.6E-34 235.3 12.2 133 4-147 631-776 (1495)
355 COG4674 Uncharacterized ABC-ty 100.0 2.1E-30 4.6E-35 191.9 6.5 134 5-145 20-181 (249)
356 KOG0061|consensus 100.0 1.3E-29 2.9E-34 216.9 12.1 138 4-146 44-205 (613)
357 COG1134 TagH ABC-type polysacc 100.0 1E-29 2.3E-34 193.4 9.6 139 4-148 41-184 (249)
358 COG0488 Uup ATPase components 100.0 1.9E-29 4E-34 212.2 12.1 136 4-147 336-475 (530)
359 PTZ00243 ABC transporter; Prov 100.0 2.6E-29 5.5E-34 232.2 12.7 132 4-146 674-817 (1560)
360 PLN03140 ABC transporter G fam 100.0 7.6E-30 1.6E-34 234.1 9.1 139 4-147 179-372 (1470)
361 COG5265 ATM1 ABC-type transpor 100.0 1.5E-29 3.3E-34 204.3 7.9 138 3-146 276-434 (497)
362 COG4107 PhnK ABC-type phosphon 100.0 9.3E-29 2E-33 180.9 10.4 143 5-147 21-187 (258)
363 KOG0059|consensus 100.0 2.2E-29 4.8E-34 222.9 8.4 138 5-149 580-736 (885)
364 COG4172 ABC-type uncharacteriz 100.0 1.1E-28 2.4E-33 198.9 10.9 142 4-147 24-193 (534)
365 PLN03073 ABC transporter F fam 100.0 3.4E-29 7.4E-34 217.5 7.4 144 4-147 191-380 (718)
366 cd03278 ABC_SMC_barmotin Barmo 99.9 3.9E-28 8.5E-33 181.9 6.7 121 7-147 14-153 (197)
367 KOG0054|consensus 99.9 9.6E-27 2.1E-31 210.0 12.4 137 3-146 1153-1310(1381)
368 cd03270 ABC_UvrA_I The excisio 99.9 9.7E-27 2.1E-31 177.6 9.7 135 4-147 9-175 (226)
369 KOG0054|consensus 99.9 5.4E-26 1.2E-30 205.2 11.4 134 4-148 535-680 (1381)
370 cd03272 ABC_SMC3_euk Eukaryoti 99.9 5.8E-26 1.3E-30 174.1 7.6 38 110-147 157-198 (243)
371 COG4178 ABC-type uncharacteriz 99.9 1E-24 2.2E-29 184.2 12.4 136 4-147 407-551 (604)
372 cd03271 ABC_UvrA_II The excisi 99.9 4.8E-24 1E-28 166.0 11.3 143 5-147 10-208 (261)
373 KOG0927|consensus 99.9 1.1E-24 2.5E-29 180.3 7.1 137 5-146 405-544 (614)
374 cd03240 ABC_Rad50 The catalyti 99.9 2.7E-24 5.9E-29 161.9 6.8 127 8-147 15-157 (204)
375 COG4615 PvdE ABC-type sideroph 99.9 3.4E-24 7.4E-29 172.7 5.1 132 4-148 337-485 (546)
376 COG1245 Predicted ATPase, RNas 99.9 9.6E-24 2.1E-28 172.4 7.7 130 6-147 352-491 (591)
377 cd03273 ABC_SMC2_euk Eukaryoti 99.9 8.3E-24 1.8E-28 163.5 7.0 133 15-147 24-206 (251)
378 KOG0060|consensus 99.9 5.9E-23 1.3E-27 171.3 11.6 143 3-146 448-605 (659)
379 cd03274 ABC_SMC4_euk Eukaryoti 99.9 5.6E-25 1.2E-29 166.6 -0.6 37 111-147 127-167 (212)
380 cd03279 ABC_sbcCD SbcCD and ot 99.9 1.3E-23 2.7E-28 158.9 6.5 128 7-147 18-169 (213)
381 KOG0062|consensus 99.9 2.1E-23 4.5E-28 172.1 7.6 132 4-146 94-233 (582)
382 KOG0065|consensus 99.9 8.8E-24 1.9E-28 188.5 5.5 137 5-146 806-965 (1391)
383 COG1129 MglA ABC-type sugar tr 99.9 2E-22 4.4E-27 167.4 11.6 140 6-147 275-437 (500)
384 KOG0927|consensus 99.9 5.2E-23 1.1E-27 170.5 7.5 134 5-146 90-256 (614)
385 KOG0064|consensus 99.9 2.5E-22 5.3E-27 166.5 9.9 139 3-146 495-647 (728)
386 KOG0066|consensus 99.9 1.6E-22 3.6E-27 165.2 8.7 136 4-146 601-739 (807)
387 cd03276 ABC_SMC6_euk Eukaryoti 99.9 3.6E-22 7.7E-27 149.8 7.2 125 6-147 12-149 (198)
388 COG4138 BtuD ABC-type cobalami 99.9 5.6E-23 1.2E-27 150.6 2.1 133 6-146 15-167 (248)
389 cd03275 ABC_SMC1_euk Eukaryoti 99.8 1.8E-21 4E-26 150.2 6.1 37 111-147 155-195 (247)
390 PRK00635 excinuclease ABC subu 99.8 2E-19 4.4E-24 166.3 10.9 38 110-147 808-848 (1809)
391 COG4170 SapD ABC-type antimicr 99.8 6.1E-20 1.3E-24 138.3 5.4 136 5-147 22-194 (330)
392 PRK00349 uvrA excinuclease ABC 99.8 2.3E-19 5E-24 159.4 9.9 38 110-147 829-869 (943)
393 cd03280 ABC_MutS2 MutS2 homolo 99.8 1.2E-19 2.5E-24 136.1 6.2 101 6-147 17-126 (200)
394 COG3845 ABC-type uncharacteriz 99.8 5.2E-19 1.1E-23 145.6 9.6 141 4-146 272-438 (501)
395 KOG0062|consensus 99.8 1.6E-19 3.5E-24 149.2 6.6 136 5-146 379-517 (582)
396 COG1245 Predicted ATPase, RNas 99.8 2.1E-19 4.4E-24 147.2 7.0 131 13-147 97-249 (591)
397 KOG2355|consensus 99.8 5.2E-19 1.1E-23 132.6 7.3 142 3-147 27-183 (291)
398 TIGR00630 uvra excinuclease AB 99.8 2.4E-18 5.1E-23 152.7 10.8 37 111-147 828-867 (924)
399 cd03277 ABC_SMC5_euk Eukaryoti 99.7 5.6E-18 1.2E-22 128.4 6.2 37 111-147 126-166 (213)
400 COG2401 ABC-type ATPase fused 99.7 1.2E-17 2.7E-22 135.7 7.9 135 4-146 397-542 (593)
401 cd03227 ABC_Class2 ABC-type Cl 99.7 8.6E-18 1.9E-22 122.2 5.8 99 9-147 14-117 (162)
402 cd03239 ABC_SMC_head The struc 99.7 3.4E-17 7.3E-22 121.0 7.8 36 112-147 95-134 (178)
403 cd03283 ABC_MutS-like MutS-lik 99.7 1.2E-17 2.5E-22 125.5 4.9 36 4-41 15-50 (199)
404 cd03243 ABC_MutS_homologs The 99.7 1.6E-17 3.5E-22 124.6 3.7 106 7-147 20-126 (202)
405 KOG0066|consensus 99.7 1.9E-17 4.1E-22 135.8 4.1 36 111-146 412-447 (807)
406 cd03285 ABC_MSH2_euk MutS2 hom 99.7 2.5E-17 5.5E-22 125.6 3.0 107 3-146 17-129 (222)
407 cd03242 ABC_RecF RecF is a rec 99.7 1.4E-15 3E-20 118.9 11.5 36 112-147 184-228 (270)
408 KOG0065|consensus 99.6 2E-16 4.3E-21 142.0 7.1 142 4-146 129-295 (1391)
409 KOG0063|consensus 99.6 9.1E-16 2E-20 125.2 8.6 132 5-148 351-493 (592)
410 cd03241 ABC_RecN RecN ATPase i 99.6 5E-16 1.1E-20 121.7 5.9 36 112-147 171-210 (276)
411 cd03282 ABC_MSH4_euk MutS4 hom 99.6 1E-15 2.2E-20 115.5 6.5 109 3-146 16-125 (204)
412 cd03281 ABC_MSH5_euk MutS5 hom 99.6 1.3E-14 2.7E-19 110.1 8.6 102 9-145 20-124 (213)
413 cd03284 ABC_MutS1 MutS1 homolo 99.5 2.1E-14 4.5E-19 109.1 5.7 37 3-40 18-54 (216)
414 PTZ00132 GTP-binding nuclear p 99.5 5.3E-14 1.2E-18 106.0 7.4 34 114-147 155-193 (215)
415 cd00820 PEPCK_HprK Phosphoenol 99.5 5.1E-14 1.1E-18 95.9 6.4 45 4-54 3-47 (107)
416 PRK00635 excinuclease ABC subu 99.5 1.6E-13 3.4E-18 127.8 11.4 36 111-146 1699-1737(1809)
417 TIGR01069 mutS2 MutS2 family p 99.5 2.5E-14 5.5E-19 125.6 5.0 104 8-146 313-419 (771)
418 COG0178 UvrA Excinuclease ATPa 99.5 3.6E-13 7.9E-18 116.7 11.7 35 111-145 822-859 (935)
419 TIGR02858 spore_III_AA stage I 99.5 2E-13 4.2E-18 107.0 8.3 38 17-54 112-149 (270)
420 cd03287 ABC_MSH3_euk MutS3 hom 99.4 2.6E-13 5.7E-18 103.5 7.7 48 3-50 18-66 (222)
421 smart00534 MUTSac ATPase domai 99.4 1.4E-13 3E-18 102.0 3.5 33 113-146 63-95 (185)
422 KOG0063|consensus 99.4 5.1E-13 1.1E-17 109.4 5.2 133 14-149 98-251 (592)
423 PRK00064 recF recombination pr 99.4 5E-12 1.1E-16 102.7 10.8 36 112-147 274-318 (361)
424 TIGR03238 dnd_assoc_3 dnd syst 99.4 6.5E-13 1.4E-17 110.4 5.4 48 5-54 21-69 (504)
425 PF02463 SMC_N: RecF/RecN/SMC 99.3 6.4E-13 1.4E-17 100.4 2.1 37 111-147 136-176 (220)
426 PRK06793 fliI flagellum-specif 99.2 2.9E-11 6.3E-16 100.0 8.0 109 5-145 146-262 (432)
427 cd01128 rho_factor Transcripti 99.2 2E-11 4.3E-16 94.7 5.2 35 11-45 11-45 (249)
428 PRK00409 recombination and DNA 99.2 1.4E-11 3E-16 108.7 4.2 33 113-146 392-424 (782)
429 cd03286 ABC_MSH6_euk MutS6 hom 99.2 1.5E-10 3.3E-15 88.1 8.4 38 3-40 17-54 (218)
430 cd01130 VirB11-like_ATPase Typ 99.0 1.7E-10 3.8E-15 85.5 3.1 44 9-52 18-61 (186)
431 TIGR02788 VirB11 P-type DNA tr 99.0 4.3E-10 9.4E-15 89.6 5.1 42 9-50 137-178 (308)
432 TIGR00630 uvra excinuclease AB 99.0 2E-10 4.4E-15 102.6 3.0 37 111-147 487-525 (924)
433 PRK00349 uvrA excinuclease ABC 99.0 2.1E-10 4.6E-15 102.7 3.0 37 111-147 489-527 (943)
434 PRK08533 flagellar accessory p 99.0 9.9E-10 2.2E-14 84.2 5.9 34 11-44 19-53 (230)
435 smart00382 AAA ATPases associa 99.0 6.7E-09 1.5E-13 70.8 9.1 92 16-145 2-94 (148)
436 cd02023 UMPK Uridine monophosp 98.9 3.7E-10 8.1E-15 84.1 2.3 23 18-40 1-23 (198)
437 PF13304 AAA_21: AAA domain; P 98.9 2.5E-09 5.4E-14 79.6 6.3 36 112-147 237-275 (303)
438 PRK06995 flhF flagellar biosyn 98.9 9.6E-10 2.1E-14 92.2 4.5 50 6-63 246-295 (484)
439 PRK06002 fliI flagellum-specif 98.9 2.7E-09 5.9E-14 88.7 6.4 59 5-64 155-229 (450)
440 PRK13695 putative NTPase; Prov 98.9 2E-10 4.3E-15 84.1 -0.3 33 112-144 79-113 (174)
441 PRK07196 fliI flagellum-specif 98.9 2.8E-09 6.1E-14 88.4 5.7 40 5-45 145-184 (434)
442 PRK07721 fliI flagellum-specif 98.8 5E-09 1.1E-13 87.2 5.1 47 5-52 148-194 (438)
443 PRK08149 ATP synthase SpaL; Va 98.8 1.2E-08 2.5E-13 84.6 6.6 50 4-54 140-192 (428)
444 cd01131 PilT Pilus retraction 98.8 2.7E-08 5.9E-13 74.5 7.9 33 18-50 3-36 (198)
445 COG3910 Predicted ATPase [Gene 98.8 1.3E-08 2.9E-13 75.7 5.7 32 113-145 131-162 (233)
446 cd01136 ATPase_flagellum-secre 98.8 1.2E-08 2.7E-13 81.9 5.4 46 5-51 59-104 (326)
447 PHA02562 46 endonuclease subun 98.8 4.5E-09 9.8E-14 89.4 3.1 37 111-147 468-515 (562)
448 PRK09825 idnK D-gluconate kina 98.7 1.1E-08 2.4E-13 75.4 4.4 36 15-54 2-37 (176)
449 PRK00300 gmk guanylate kinase; 98.7 1.3E-08 2.8E-13 75.9 4.0 28 14-41 3-30 (205)
450 PRK09270 nucleoside triphospha 98.7 1.2E-08 2.7E-13 77.8 3.4 34 14-47 31-64 (229)
451 PRK07594 type III secretion sy 98.7 1.9E-08 4E-13 83.5 4.7 48 5-53 145-192 (433)
452 PRK10078 ribose 1,5-bisphospho 98.7 2.8E-08 6.1E-13 73.5 5.2 35 16-53 2-36 (186)
453 TIGR00634 recN DNA repair prot 98.7 9.9E-09 2.1E-13 87.9 3.1 36 112-147 441-480 (563)
454 TIGR00606 rad50 rad50. This fa 98.7 9.8E-09 2.1E-13 95.2 3.2 35 17-51 29-68 (1311)
455 PF13555 AAA_29: P-loop contai 98.7 3.1E-08 6.7E-13 61.0 4.3 38 7-44 13-51 (62)
456 PRK09099 type III secretion sy 98.7 2.7E-08 6E-13 82.7 5.4 48 5-53 153-200 (441)
457 cd01120 RecA-like_NTPases RecA 98.7 6.8E-09 1.5E-13 73.5 1.6 32 18-49 1-32 (165)
458 TIGR00235 udk uridine kinase. 98.7 1.6E-08 3.4E-13 76.0 3.4 29 14-42 4-32 (207)
459 TIGR02546 III_secr_ATP type II 98.7 2.6E-08 5.7E-13 82.6 4.7 47 5-52 135-181 (422)
460 PLN02796 D-glycerate 3-kinase 98.7 7.1E-09 1.5E-13 83.6 1.2 50 4-53 80-140 (347)
461 TIGR03498 FliI_clade3 flagella 98.6 3.7E-08 8E-13 81.5 5.2 49 6-54 130-178 (418)
462 TIGR00554 panK_bact pantothena 98.6 1.8E-08 3.9E-13 79.8 3.2 37 14-50 60-98 (290)
463 PRK10869 recombination and rep 98.6 2.6E-08 5.7E-13 85.2 4.0 36 112-147 431-470 (553)
464 cd01124 KaiC KaiC is a circadi 98.6 4.4E-08 9.5E-13 71.7 4.4 32 112-143 72-109 (187)
465 TIGR01026 fliI_yscN ATPase Fli 98.6 4.3E-08 9.4E-13 81.7 4.8 47 5-52 153-199 (440)
466 PRK01889 GTPase RsgA; Reviewed 98.6 2.8E-08 6.2E-13 80.7 3.6 58 6-63 185-248 (356)
467 PRK06067 flagellar accessory p 98.6 4.4E-08 9.4E-13 74.9 4.5 32 113-144 102-135 (234)
468 PRK07960 fliI flagellum-specif 98.6 5.4E-08 1.2E-12 81.0 5.3 45 10-54 169-216 (455)
469 TIGR03497 FliI_clade2 flagella 98.6 7.1E-08 1.5E-12 79.8 5.7 48 5-53 127-174 (413)
470 PRK09862 putative ATP-dependen 98.6 5.4E-08 1.2E-12 82.3 4.1 50 5-54 199-248 (506)
471 TIGR03496 FliI_clade1 flagella 98.6 1E-07 2.3E-12 78.8 5.5 47 5-52 127-173 (411)
472 PRK05922 type III secretion sy 98.5 1.3E-07 2.8E-12 78.5 5.7 46 6-52 148-193 (434)
473 PRK14723 flhF flagellar biosyn 98.5 3.2E-08 6.8E-13 86.9 2.0 58 5-62 174-233 (767)
474 PRK08472 fliI flagellum-specif 98.5 1E-07 2.2E-12 79.2 4.9 49 5-54 147-195 (434)
475 cd00879 Sar1 Sar1 subfamily. 98.5 1.1E-07 2.4E-12 69.8 4.3 48 5-53 9-64 (190)
476 TIGR00618 sbcc exonuclease Sbc 98.5 5.6E-08 1.2E-12 88.5 3.1 36 111-146 950-995 (1042)
477 PRK05688 fliI flagellum-specif 98.5 1.1E-07 2.4E-12 79.3 4.5 38 5-43 158-195 (451)
478 cd02025 PanK Pantothenate kina 98.5 6.4E-08 1.4E-12 73.8 2.6 32 18-49 1-34 (220)
479 PRK10246 exonuclease subunit S 98.5 7.3E-08 1.6E-12 87.8 3.1 33 113-145 951-991 (1047)
480 PRK04863 mukB cell division pr 98.5 2E-07 4.4E-12 87.0 6.0 46 6-52 18-63 (1486)
481 PRK03846 adenylylsulfate kinas 98.5 1.3E-07 2.8E-12 70.7 3.8 50 14-63 22-77 (198)
482 TIGR01420 pilT_fam pilus retra 98.5 5E-07 1.1E-11 73.1 7.4 36 14-49 120-156 (343)
483 PRK10416 signal recognition pa 98.5 6E-08 1.3E-12 77.8 2.1 41 14-54 112-152 (318)
484 PRK01156 chromosome segregatio 98.5 1.1E-07 2.5E-12 85.1 4.0 37 110-146 800-842 (895)
485 TIGR02322 phosphon_PhnN phosph 98.5 1.8E-07 3.9E-12 68.4 4.2 33 16-49 1-33 (179)
486 TIGR02168 SMC_prok_B chromosom 98.4 1E-07 2.2E-12 86.5 3.1 30 10-40 18-50 (1179)
487 PRK08972 fliI flagellum-specif 98.4 2.1E-07 4.6E-12 77.3 4.6 38 5-43 152-189 (444)
488 PRK03918 chromosome segregatio 98.4 9.9E-08 2.1E-12 85.1 2.8 35 112-146 789-829 (880)
489 cd04155 Arl3 Arl3 subfamily. 98.4 3.3E-07 7E-12 66.0 5.0 35 18-52 16-58 (173)
490 PF13476 AAA_23: AAA domain; P 98.4 2.1E-07 4.4E-12 68.3 3.9 34 6-40 10-43 (202)
491 cd02026 PRK Phosphoribulokinas 98.4 2E-07 4.3E-12 73.3 4.0 32 18-49 1-32 (273)
492 PRK06315 type III secretion sy 98.4 2.1E-07 4.6E-12 77.5 4.2 46 5-51 154-200 (442)
493 TIGR00611 recf recF protein. A 98.4 1.7E-07 3.7E-12 76.5 2.5 36 112-147 276-320 (365)
494 PRK06936 type III secretion sy 98.4 4.2E-07 9.2E-12 75.6 4.9 38 5-43 152-189 (439)
495 TIGR03263 guanyl_kin guanylate 98.4 3.3E-07 7.1E-12 66.9 3.7 26 16-41 1-26 (180)
496 PRK00098 GTPase RsgA; Reviewed 98.4 4.5E-07 9.8E-12 72.0 4.4 35 15-49 163-197 (298)
497 TIGR00606 rad50 rad50. This fa 98.3 5.2E-07 1.1E-11 83.9 5.2 37 111-147 1199-1241(1311)
498 cd01854 YjeQ_engC YjeQ/EngC. 98.3 4E-07 8.7E-12 71.9 3.9 40 9-49 155-194 (287)
499 PRK06820 type III secretion sy 98.3 8.3E-07 1.8E-11 73.9 5.4 42 5-47 153-194 (440)
500 TIGR00368 Mg chelatase-related 98.3 4.6E-07 9.9E-12 76.7 3.7 50 5-54 200-249 (499)
No 1
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.2e-44 Score=270.86 Aligned_cols=139 Identities=30% Similarity=0.383 Sum_probs=111.3
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec----------ceeeeeecCcccccCcccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV----------RDIGYMPQVGLMRSGALLA 73 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~----------~~i~~~~q~~~~~~~~~~~ 73 (149)
-+|++||+++.+||+++|+||||||||||||||+++..|++|+|+++|.++ +++|+|||. ..+++
T Consensus 16 ~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~-----fnLFP 90 (240)
T COG1126 16 EVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQ-----FNLFP 90 (240)
T ss_pred EEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcCeeccc-----ccccc
Confidence 379999999999999999999999999999999999999999999999644 369999998 66677
Q ss_pred cCChhHHHhhc-----ccC--chHHHHHHHhhhhHHH-HhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcC
Q psy10767 74 EDSPSYLLEYY-----NCS--TLEDVFLYLCEQDQIL-FSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPV 145 (149)
Q Consensus 74 ~~~~~~~~~~~-----~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~ 145 (149)
..++-+|.-.. +.. ..++.+..+++.+++. .....+..|||||||||||||||+.+|+++++|||||+|||.
T Consensus 91 HlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPE 170 (240)
T COG1126 91 HLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPE 170 (240)
T ss_pred cchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHH
Confidence 77777775432 111 1233444555555552 223334455999999999999999999999999999999997
Q ss_pred CC
Q psy10767 146 LS 147 (149)
Q Consensus 146 ~~ 147 (149)
..
T Consensus 171 lv 172 (240)
T COG1126 171 LV 172 (240)
T ss_pred HH
Confidence 53
No 2
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.5e-44 Score=272.83 Aligned_cols=138 Identities=31% Similarity=0.339 Sum_probs=112.3
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec----ceeeeeecCcccccCcccccCChhH
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV----RDIGYMPQVGLMRSGALLAEDSPSY 79 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~----~~i~~~~q~~~~~~~~~~~~~~~~~ 79 (149)
.+++|+||++.+||+++|+||||||||||||+|+|+.+|++|+|.++|..+ .+++||||+ ..++++.++.+
T Consensus 17 ~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~-----~~LlPW~Tv~~ 91 (248)
T COG1116 17 EVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQE-----DALLPWLTVLD 91 (248)
T ss_pred EEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEecc-----CcccchhhHHh
Confidence 479999999999999999999999999999999999999999999999865 579999999 55677777777
Q ss_pred HHhhc----ccCc--hHHHHHHHhhhhHH---HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCCCC
Q psy10767 80 LLEYY----NCST--LEDVFLYLCEQDQI---LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLSF 148 (149)
Q Consensus 80 ~~~~~----~~~~--~~~~~~~~~~~~~~---~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~~~ 148 (149)
|..+. .... ....+...++.+++ .+++... +||||||||+|||||+.+|++|+|||||++||..+|.
T Consensus 92 NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~q--LSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~ 167 (248)
T COG1116 92 NVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQ--LSGGMRQRVAIARALATRPKLLLLDEPFGALDALTRE 167 (248)
T ss_pred hheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccc--cChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHH
Confidence 76542 1111 12344555555554 3344444 4999999999999999999999999999999987663
No 3
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=3.1e-42 Score=261.46 Aligned_cols=139 Identities=29% Similarity=0.332 Sum_probs=112.0
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec-------------ceeeeeecCcccccCc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV-------------RDIGYMPQVGLMRSGA 70 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~-------------~~i~~~~q~~~~~~~~ 70 (149)
.+++++||+|++||+++|+|||||||||||++|.|+.+|++|+|+++|.++ ++|||+||+ ..
T Consensus 19 ~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~-----~n 93 (226)
T COG1136 19 EALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQN-----FN 93 (226)
T ss_pred EecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHHHhEEEECcc-----CC
Confidence 479999999999999999999999999999999999999999999999776 359999998 66
Q ss_pred ccccCChhHHHhh----cccCc--hHHHHHHHhhhhHHHHh-h-cCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCC
Q psy10767 71 LLAEDSPSYLLEY----YNCST--LEDVFLYLCEQDQILFS-L-VGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGL 142 (149)
Q Consensus 71 ~~~~~~~~~~~~~----~~~~~--~~~~~~~~~~~~~~~~~-~-~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gL 142 (149)
+.+..++.+|... ..... ..+....+.+.+++... . .....+||||||||||||||+.+|+++++||||.+|
T Consensus 94 Ll~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnL 173 (226)
T COG1136 94 LLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNL 173 (226)
T ss_pred CCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccC
Confidence 7788888888764 22221 23344444444444211 1 223456999999999999999999999999999999
Q ss_pred CcCCC
Q psy10767 143 DPVLS 147 (149)
Q Consensus 143 D~~~~ 147 (149)
|....
T Consensus 174 D~~t~ 178 (226)
T COG1136 174 DSKTA 178 (226)
T ss_pred ChHHH
Confidence 98753
No 4
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=2.8e-42 Score=266.21 Aligned_cols=142 Identities=29% Similarity=0.379 Sum_probs=106.2
Q ss_pred ccceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec---------ceeeeeecCcccccCcccc
Q psy10767 3 DVSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV---------RDIGYMPQVGLMRSGALLA 73 (149)
Q Consensus 3 ~~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~---------~~i~~~~q~~~~~~~~~~~ 73 (149)
.++++|+||++++||+++|+||||||||||||+|+|+++|.+|+|.++|+++ +.++|+||.+....+....
T Consensus 15 ~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~ 94 (258)
T COG1120 15 KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVY 94 (258)
T ss_pred eeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEe
Confidence 3689999999999999999999999999999999999999999999999876 4699999985433332222
Q ss_pred cCChhHH----Hhhcc-cC-chHHHHHHHhhhhHH---HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCc
Q psy10767 74 EDSPSYL----LEYYN-CS-TLEDVFLYLCEQDQI---LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDP 144 (149)
Q Consensus 74 ~~~~~~~----~~~~~-~~-~~~~~~~~~~~~~~~---~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~ 144 (149)
+. +... ...+. +. ..++.+.++++..++ ..+.+. ++||||||||.|||||+++|++|+|||||++||.
T Consensus 95 d~-V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~--~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi 171 (258)
T COG1120 95 EL-VLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVD--ELSGGERQRVLIARALAQETPILLLDEPTSHLDI 171 (258)
T ss_pred eh-HhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCccc--ccChhHHHHHHHHHHHhcCCCEEEeCCCccccCH
Confidence 21 1111 01111 11 123345555555544 333333 4599999999999999999999999999999998
Q ss_pred CCC
Q psy10767 145 VLS 147 (149)
Q Consensus 145 ~~~ 147 (149)
..+
T Consensus 172 ~~Q 174 (258)
T COG1120 172 AHQ 174 (258)
T ss_pred HHH
Confidence 654
No 5
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.4e-42 Score=275.35 Aligned_cols=137 Identities=30% Similarity=0.354 Sum_probs=113.8
Q ss_pred ceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec-------ceeeeeecCcccccCcccccCCh
Q psy10767 5 SASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV-------RDIGYMPQVGLMRSGALLAEDSP 77 (149)
Q Consensus 5 ~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~-------~~i~~~~q~~~~~~~~~~~~~~~ 77 (149)
+++++|++|.+||+++|+||||||||||||+|+|+++|++|+|+++|.++ ++|++|||+ ..+++.+++
T Consensus 18 ~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVFQ~-----yALyPhmtV 92 (338)
T COG3839 18 VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVFQN-----YALYPHMTV 92 (338)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEeCC-----ccccCCCcH
Confidence 79999999999999999999999999999999999999999999999887 579999998 667778888
Q ss_pred hHHHhhcc-c-----CchHHHHHHHhhhhHH---HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCCCC
Q psy10767 78 SYLLEYYN-C-----STLEDVFLYLCEQDQI---LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLSF 148 (149)
Q Consensus 78 ~~~~~~~~-~-----~~~~~~~~~~~~~~~~---~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~~~ 148 (149)
++|..+.- . ...++++.++.+..++ +++....+ ||||||||||||||+++|++++||||+|+||...|.
T Consensus 93 ~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~L--SGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~ 170 (338)
T COG3839 93 YENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQL--SGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRV 170 (338)
T ss_pred HHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccC--ChhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHH
Confidence 88876631 1 1224444444444443 45554544 999999999999999999999999999999987653
No 6
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.8e-42 Score=267.13 Aligned_cols=139 Identities=27% Similarity=0.322 Sum_probs=111.7
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec------------ceeeeeecCcccccCcc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV------------RDIGYMPQVGLMRSGAL 71 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~------------~~i~~~~q~~~~~~~~~ 71 (149)
.+++|+||+|++||++||||.||||||||+|||+++.+|++|+|.++|.++ ++||++||+ +.+
T Consensus 20 ~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQh-----FnL 94 (339)
T COG1135 20 TALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQH-----FNL 94 (339)
T ss_pred eeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHHHhhccEEecc-----ccc
Confidence 589999999999999999999999999999999999999999999999776 469999998 445
Q ss_pred cccCChhHHHhhc----ccC--chHHHHHHHhhhhHHHH-hhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCc
Q psy10767 72 LAEDSPSYLLEYY----NCS--TLEDVFLYLCEQDQILF-SLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDP 144 (149)
Q Consensus 72 ~~~~~~~~~~~~~----~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~ 144 (149)
....++++|..+. +.. ..+.+..++++.+++.. ....+..|||||||||+|||||+.+|+||+.|||||+|||
T Consensus 95 LssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP 174 (339)
T COG1135 95 LSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDP 174 (339)
T ss_pred cccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCCCEEEecCccccCCh
Confidence 5556666665542 221 12445555666655522 2223344699999999999999999999999999999999
Q ss_pred CCC
Q psy10767 145 VLS 147 (149)
Q Consensus 145 ~~~ 147 (149)
...
T Consensus 175 ~TT 177 (339)
T COG1135 175 ETT 177 (339)
T ss_pred HHH
Confidence 764
No 7
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.2e-41 Score=259.37 Aligned_cols=139 Identities=26% Similarity=0.347 Sum_probs=107.5
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec------ceeeeeecCcccccCcccccCCh
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV------RDIGYMPQVGLMRSGALLAEDSP 77 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~------~~i~~~~q~~~~~~~~~~~~~~~ 77 (149)
++|+||||++++|++++|+||||||||||+|+|+|+++|++|+|.++|.+. ..||||||...+. . ....++
T Consensus 18 ~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d--~-~fP~tV 94 (254)
T COG1121 18 PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVD--R-SFPITV 94 (254)
T ss_pred eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccC--C-CCCcCH
Confidence 689999999999999999999999999999999999999999999998754 4699999964211 1 112234
Q ss_pred hHHHhhc---c-----c-C-chHHHHHHHhhhhHH---HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCc
Q psy10767 78 SYLLEYY---N-----C-S-TLEDVFLYLCEQDQI---LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDP 144 (149)
Q Consensus 78 ~~~~~~~---~-----~-~-~~~~~~~~~~~~~~~---~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~ 144 (149)
.+..... . . . ...+.+.++++.+++ .++.++.+ ||||+|||.|||||+++|++|+|||||+|+|+
T Consensus 95 ~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~L--SGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~ 172 (254)
T COG1121 95 KDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGEL--SGGQKQRVLLARALAQNPDLLLLDEPFTGVDV 172 (254)
T ss_pred HHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCccccc--CcHHHHHHHHHHHhccCCCEEEecCCcccCCH
Confidence 4443321 0 0 0 113555666666655 44555555 99999999999999999999999999999999
Q ss_pred CCC
Q psy10767 145 VLS 147 (149)
Q Consensus 145 ~~~ 147 (149)
..+
T Consensus 173 ~~~ 175 (254)
T COG1121 173 AGQ 175 (254)
T ss_pred HHH
Confidence 764
No 8
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=8.9e-42 Score=273.33 Aligned_cols=139 Identities=31% Similarity=0.348 Sum_probs=113.9
Q ss_pred ccceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec-------ceeeeeecCcccccCcccccC
Q psy10767 3 DVSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV-------RDIGYMPQVGLMRSGALLAED 75 (149)
Q Consensus 3 ~~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~-------~~i~~~~q~~~~~~~~~~~~~ 75 (149)
.++++|+||+|.+||+++|+||||||||||||+|+|+..|++|+|.++|+++ +.|++|||+ ..+++.+
T Consensus 18 ~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~VFQ~-----YALFPHl 92 (352)
T COG3842 18 FTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMVFQS-----YALFPHM 92 (352)
T ss_pred eeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccceeecC-----cccCCCC
Confidence 3589999999999999999999999999999999999999999999999987 579999998 6677778
Q ss_pred ChhHHHhhc-c--c-Cc---hHHHHHHHhhhhHH---HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcC
Q psy10767 76 SPSYLLEYY-N--C-ST---LEDVFLYLCEQDQI---LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPV 145 (149)
Q Consensus 76 ~~~~~~~~~-~--~-~~---~~~~~~~~~~~~~~---~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~ 145 (149)
++.+|..|- . . .. ..+++.++++.+.+ ..++... +||||||||||||||+.+|++||||||+++||..
T Consensus 93 tV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~q--LSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~k 170 (352)
T COG3842 93 TVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQ--LSGGQQQRVALARALVPEPKVLLLDEPLSALDAK 170 (352)
T ss_pred cHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhh--hChHHHHHHHHHHHhhcCcchhhhcCcccchhHH
Confidence 888876653 1 1 11 22344555555444 3334444 4999999999999999999999999999999987
Q ss_pred CCC
Q psy10767 146 LSF 148 (149)
Q Consensus 146 ~~~ 148 (149)
.|.
T Consensus 171 LR~ 173 (352)
T COG3842 171 LRE 173 (352)
T ss_pred HHH
Confidence 664
No 9
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=4.7e-41 Score=247.17 Aligned_cols=140 Identities=27% Similarity=0.320 Sum_probs=116.0
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec------------ceeeeeecCcccccCcc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV------------RDIGYMPQVGLMRSGAL 71 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~------------~~i~~~~q~~~~~~~~~ 71 (149)
++|+|+||+|++||++-|+||||||||||+|+|++..+|+.|+|+++|.++ ++||+|||+ ..+
T Consensus 16 ~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD-----~rL 90 (223)
T COG2884 16 EALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQD-----FRL 90 (223)
T ss_pred hhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhheeeeEeee-----ccc
Confidence 589999999999999999999999999999999999999999999999887 469999998 566
Q ss_pred cccCChhHHHhhc----ccC--chHHHHHHHhhhhHHHH-hhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCc
Q psy10767 72 LAEDSPSYLLEYY----NCS--TLEDVFLYLCEQDQILF-SLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDP 144 (149)
Q Consensus 72 ~~~~~~~~~~~~~----~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~ 144 (149)
....++++|..+. +.. ...+.+.+.++.+++.+ ...-+..|||||||||+||||++++|++||.||||.+|||
T Consensus 91 L~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp 170 (223)
T COG2884 91 LPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDP 170 (223)
T ss_pred cccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCCh
Confidence 6777777776653 222 23555666667666632 2333445699999999999999999999999999999999
Q ss_pred CCCC
Q psy10767 145 VLSF 148 (149)
Q Consensus 145 ~~~~ 148 (149)
...+
T Consensus 171 ~~s~ 174 (223)
T COG2884 171 DLSW 174 (223)
T ss_pred HHHH
Confidence 8654
No 10
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1.8e-40 Score=251.53 Aligned_cols=140 Identities=29% Similarity=0.419 Sum_probs=110.3
Q ss_pred ccceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec------------ceeeeeecCcccccCc
Q psy10767 3 DVSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV------------RDIGYMPQVGLMRSGA 70 (149)
Q Consensus 3 ~~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~------------~~i~~~~q~~~~~~~~ 70 (149)
.++++|+||+|++||+++|+||||||||||+|+|.|+++|++|+|+++|.++ +++|++||. +.
T Consensus 21 ~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~-----gA 95 (263)
T COG1127 21 RVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQ-----GA 95 (263)
T ss_pred EEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHhheeEEeec-----cc
Confidence 3589999999999999999999999999999999999999999999999887 359999998 66
Q ss_pred ccccCChhHHHhhcc-----cCc--hHHHHHHHhhhhHH--HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCC
Q psy10767 71 LLAEDSPSYLLEYYN-----CST--LEDVFLYLCEQDQI--LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVG 141 (149)
Q Consensus 71 ~~~~~~~~~~~~~~~-----~~~--~~~~~~~~~~~~~~--~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~g 141 (149)
++...++.+|..+.- ... .++.+...++.+++ ........+|||||++|++||||++.+|+|+++||||+|
T Consensus 96 LFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdPell~~DEPtsG 175 (263)
T COG1127 96 LFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSG 175 (263)
T ss_pred cccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCCCEEEecCCCCC
Confidence 667777777766531 111 12222222333333 112233445699999999999999999999999999999
Q ss_pred CCcCCC
Q psy10767 142 LDPVLS 147 (149)
Q Consensus 142 LD~~~~ 147 (149)
|||...
T Consensus 176 LDPI~a 181 (263)
T COG1127 176 LDPISA 181 (263)
T ss_pred CCcchH
Confidence 999753
No 11
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=1.7e-40 Score=262.29 Aligned_cols=140 Identities=36% Similarity=0.502 Sum_probs=112.6
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec--------ceeeeeecCcccccCcccccC
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV--------RDIGYMPQVGLMRSGALLAED 75 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~--------~~i~~~~q~~~~~~~~~~~~~ 75 (149)
.+|+||||++++|+++||+||||||||||+|+|+|+.+|++|+|.++|.+. +.+||+||++ .++++.
T Consensus 19 ~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~~~~~-----~~~~~l 93 (293)
T COG1131 19 TALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYVPQEP-----SLYPEL 93 (293)
T ss_pred EEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEEEccCC-----CCCccc
Confidence 689999999999999999999999999999999999999999999999765 3599999984 455666
Q ss_pred ChhHHHhhc----ccC--chHHHHHHHhhhhHHHH-hhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCCCC
Q psy10767 76 SPSYLLEYY----NCS--TLEDVFLYLCEQDQILF-SLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLSF 148 (149)
Q Consensus 76 ~~~~~~~~~----~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~~~ 148 (149)
++.+++.++ ... ..++.+.++++.+++.. .......+|+|||||++||+||+++|+++||||||+||||..+.
T Consensus 94 T~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~ 173 (293)
T COG1131 94 TVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRR 173 (293)
T ss_pred cHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHH
Confidence 777766654 222 12345556666665532 12223345999999999999999999999999999999998653
No 12
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.4e-40 Score=251.49 Aligned_cols=140 Identities=29% Similarity=0.344 Sum_probs=111.6
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec------------ceeeeeecCcccccCcc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV------------RDIGYMPQVGLMRSGAL 71 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~------------~~i~~~~q~~~~~~~~~ 71 (149)
.++++|||+|++||+++|+||||||||||||+|+|+.+|++|+|.++|.++ +++|++||. +.+
T Consensus 18 ~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~-----~nL 92 (258)
T COG3638 18 QALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRDIGMIFQQ-----FNL 92 (258)
T ss_pred eeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHHhceeEecc-----CCc
Confidence 579999999999999999999999999999999999999999999999665 359999998 556
Q ss_pred cccCChhHHHhhc------------ccCch--HHHHHHHhhhhHHH-HhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEc
Q psy10767 72 LAEDSPSYLLEYY------------NCSTL--EDVFLYLCEQDQIL-FSLVGSESAFGGQQRRVSFAVSLIHDPKILILD 136 (149)
Q Consensus 72 ~~~~~~~~~~~~~------------~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~sgGqkqrv~iaral~~~p~illlD 136 (149)
.++.++.+|.... ++... +..+...++.+++. ........|||||+|||+|||||+++|+++|.|
T Consensus 93 v~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIARaL~Q~pkiILAD 172 (258)
T COG3638 93 VPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKIILAD 172 (258)
T ss_pred ccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHHHHhcCCCEEecC
Confidence 6666666654331 22222 33344555666653 223334455999999999999999999999999
Q ss_pred CCCCCCCcCCCC
Q psy10767 137 EPTVGLDPVLSF 148 (149)
Q Consensus 137 EPt~gLD~~~~~ 148 (149)
||+++|||....
T Consensus 173 EPvasLDp~~a~ 184 (258)
T COG3638 173 EPVASLDPESAK 184 (258)
T ss_pred CcccccChhhHH
Confidence 999999998653
No 13
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.2e-40 Score=246.68 Aligned_cols=138 Identities=29% Similarity=0.421 Sum_probs=105.3
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCc-----ceEEECCeec-----------ceeeeeecCcccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDH-----GSISLSARTV-----------RDIGYMPQVGLMR 67 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~-----G~i~~~g~~~-----------~~i~~~~q~~~~~ 67 (149)
.+|++||+.|++++++|||||||||||||||++.++.+... |+|.++|+++ ++||+|||.+.-+
T Consensus 21 ~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkPnPF 100 (253)
T COG1117 21 HALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPF 100 (253)
T ss_pred hhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeeccCCCCC
Confidence 37899999999999999999999999999999999987764 9999999887 4599999985433
Q ss_pred cCcccccCChhHHHhh----cccC--chHHHHHHHhhhhHHH----Hhh-cCCCCCChhHHHHHHHHHHHhcCCCEEEEc
Q psy10767 68 SGALLAEDSPSYLLEY----YNCS--TLEDVFLYLCEQDQIL----FSL-VGSESAFGGQQRRVSFAVSLIHDPKILILD 136 (149)
Q Consensus 68 ~~~~~~~~~~~~~~~~----~~~~--~~~~~~~~~~~~~~~~----~~~-~~~~~~sgGqkqrv~iaral~~~p~illlD 136 (149)
+ .++++|..+ .+.. ..++.+++.++...++ +++ ....+||||||||+|||||++.+|+|||||
T Consensus 101 -----p-~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARalAv~PeVlLmD 174 (253)
T COG1117 101 -----P-MSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMD 174 (253)
T ss_pred -----C-chHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHHhcCCcEEEec
Confidence 2 444454433 3322 2234444444333331 111 233457999999999999999999999999
Q ss_pred CCCCCCCcCCC
Q psy10767 137 EPTVGLDPVLS 147 (149)
Q Consensus 137 EPt~gLD~~~~ 147 (149)
||||+|||.+.
T Consensus 175 EPtSALDPIsT 185 (253)
T COG1117 175 EPTSALDPIST 185 (253)
T ss_pred CcccccCchhH
Confidence 99999999864
No 14
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=1.6e-40 Score=253.89 Aligned_cols=138 Identities=29% Similarity=0.345 Sum_probs=113.5
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec---------ceeeeeecCcccccCccccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV---------RDIGYMPQVGLMRSGALLAE 74 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~---------~~i~~~~q~~~~~~~~~~~~ 74 (149)
.+++|+||+|++||+++++|||||||||+||+|+++++|++|+|+++|+++ ++|||+-|. ..+++.
T Consensus 15 ~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYviQq-----igLFPh 89 (309)
T COG1125 15 KAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYVIQQ-----IGLFPH 89 (309)
T ss_pred eeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhhhhh-----cccCCC
Confidence 478999999999999999999999999999999999999999999999887 469999998 455667
Q ss_pred CChhHHHhhc----ccCc--hHHHHHHHhhhhHH-----HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCC
Q psy10767 75 DSPSYLLEYY----NCST--LEDVFLYLCEQDQI-----LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLD 143 (149)
Q Consensus 75 ~~~~~~~~~~----~~~~--~~~~~~~~~~~~~~-----~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD 143 (149)
+++.+|.... +|.. .++++.++++.+++ ..++.. .|||||+|||-+||||+.+|+|++|||||++||
T Consensus 90 ~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~--eLSGGQQQRVGv~RALAadP~ilLMDEPFgALD 167 (309)
T COG1125 90 LTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPH--ELSGGQQQRVGVARALAADPPILLMDEPFGALD 167 (309)
T ss_pred ccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCch--hcCcchhhHHHHHHHHhcCCCeEeecCCccccC
Confidence 7777776542 3322 24455566665554 233333 459999999999999999999999999999999
Q ss_pred cCCCC
Q psy10767 144 PVLSF 148 (149)
Q Consensus 144 ~~~~~ 148 (149)
|..|.
T Consensus 168 pI~R~ 172 (309)
T COG1125 168 PITRK 172 (309)
T ss_pred hhhHH
Confidence 99874
No 15
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.8e-40 Score=249.14 Aligned_cols=139 Identities=28% Similarity=0.352 Sum_probs=110.1
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec----------ceeeeeecCcccccCcccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV----------RDIGYMPQVGLMRSGALLA 73 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~----------~~i~~~~q~~~~~~~~~~~ 73 (149)
.++++|||++.+||++||+|+||||||||.|+|+|+.+|++|+|.++|... +.+.+|||++. ..+.+
T Consensus 21 ~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~---~SLnP 97 (252)
T COG1124 21 HALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPY---SSLNP 97 (252)
T ss_pred hhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccceeEEecCCc---cccCc
Confidence 479999999999999999999999999999999999999999999999643 46899999964 45556
Q ss_pred cCChhHHHhh----cccCchHHHHHHHhhhhHH----HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcC
Q psy10767 74 EDSPSYLLEY----YNCSTLEDVFLYLCEQDQI----LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPV 145 (149)
Q Consensus 74 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~ 145 (149)
+.++.+.... ......++.+.++++.+++ ..++... +||||+||+||||||+.+|++||+|||||+||+.
T Consensus 98 ~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~e--LSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~s 175 (252)
T COG1124 98 RRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHE--LSGGQRQRIAIARALIPEPKLLILDEPTSALDVS 175 (252)
T ss_pred chhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchh--cChhHHHHHHHHHHhccCCCEEEecCchhhhcHH
Confidence 6665544322 1222234445566666554 3334444 5999999999999999999999999999999986
Q ss_pred CC
Q psy10767 146 LS 147 (149)
Q Consensus 146 ~~ 147 (149)
.+
T Consensus 176 iQ 177 (252)
T COG1124 176 VQ 177 (252)
T ss_pred HH
Confidence 43
No 16
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=1.7e-39 Score=245.49 Aligned_cols=139 Identities=28% Similarity=0.344 Sum_probs=104.7
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec------------ceeeeeecCcccccCcc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV------------RDIGYMPQVGLMRSGAL 71 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~------------~~i~~~~q~~~~~~~~~ 71 (149)
.+++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++ +.++|++|++. +
T Consensus 17 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~-----~ 91 (216)
T TIGR00960 17 PALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHR-----L 91 (216)
T ss_pred eEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHhceEEecCcc-----c
Confidence 489999999999999999999999999999999999999999999999764 24899999843 3
Q ss_pred cccCChhHHHhhc----ccCc--hHHHHHHHhhhhHHHH-hhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCc
Q psy10767 72 LAEDSPSYLLEYY----NCST--LEDVFLYLCEQDQILF-SLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDP 144 (149)
Q Consensus 72 ~~~~~~~~~~~~~----~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~ 144 (149)
+...++.++..+. .... ..+.+..+++.+++.. .......+|||||||++|||||+.+|++|||||||++||+
T Consensus 92 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~ 171 (216)
T TIGR00960 92 LSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDP 171 (216)
T ss_pred cccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCH
Confidence 3344555554331 1111 1222333444433311 1112235699999999999999999999999999999999
Q ss_pred CCC
Q psy10767 145 VLS 147 (149)
Q Consensus 145 ~~~ 147 (149)
..+
T Consensus 172 ~~~ 174 (216)
T TIGR00960 172 ELS 174 (216)
T ss_pred HHH
Confidence 765
No 17
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5e-39 Score=243.63 Aligned_cols=139 Identities=27% Similarity=0.318 Sum_probs=105.5
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec----ceeeeeecCcccccCcccccCChhH
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV----RDIGYMPQVGLMRSGALLAEDSPSY 79 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~----~~i~~~~q~~~~~~~~~~~~~~~~~ 79 (149)
++++++||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++ +.++|++|++. ++...++.+
T Consensus 18 ~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~-----~~~~~tv~e 92 (220)
T cd03293 18 TALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQQDA-----LLPWLTVLD 92 (220)
T ss_pred EEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEecccc-----cccCCCHHH
Confidence 589999999999999999999999999999999999999999999999875 46999999843 333445555
Q ss_pred HHhhc----ccCc--hHHHHHHHhhhhHHHH-hhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCCC
Q psy10767 80 LLEYY----NCST--LEDVFLYLCEQDQILF-SLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 80 ~~~~~----~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~~ 147 (149)
+..+. .... ..+.+..+++.+++.. .......+|+|||||++|||||+.+|+++||||||+|||+..+
T Consensus 93 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~ 167 (220)
T cd03293 93 NVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTR 167 (220)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHH
Confidence 54321 1111 1222333444433311 1122235699999999999999999999999999999999765
No 18
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.7e-39 Score=261.41 Aligned_cols=138 Identities=28% Similarity=0.383 Sum_probs=109.0
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec-------ceeeeeecCcccccCcccccCC
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV-------RDIGYMPQVGLMRSGALLAEDS 76 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~-------~~i~~~~q~~~~~~~~~~~~~~ 76 (149)
.+++++||++++||+++|+||||||||||+|+|+|+.+|++|+|.++|+++ +.|+|+||+. .+++..+
T Consensus 18 ~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~-----~lfp~~t 92 (356)
T PRK11650 18 QVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMVFQNY-----ALYPHMS 92 (356)
T ss_pred EEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCc-----cccCCCC
Confidence 478999999999999999999999999999999999999999999999876 4699999984 4455566
Q ss_pred hhHHHhhcc----cCc--hHHHHHHHhhhhHH---HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCCC
Q psy10767 77 PSYLLEYYN----CST--LEDVFLYLCEQDQI---LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 77 ~~~~~~~~~----~~~--~~~~~~~~~~~~~~---~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~~ 147 (149)
+.++..+.. ... ....+.++++.+++ .++... .|||||||||+|||||+.+|++|||||||++||+..+
T Consensus 93 v~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~--~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r 170 (356)
T PRK11650 93 VRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPR--ELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLR 170 (356)
T ss_pred HHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChh--hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence 776665421 111 12333444444443 233333 4599999999999999999999999999999998765
Q ss_pred C
Q psy10767 148 F 148 (149)
Q Consensus 148 ~ 148 (149)
.
T Consensus 171 ~ 171 (356)
T PRK11650 171 V 171 (356)
T ss_pred H
Confidence 3
No 19
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4e-39 Score=242.94 Aligned_cols=137 Identities=34% Similarity=0.436 Sum_probs=104.1
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec-------ceeeeeecCcccccCcccccCC
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV-------RDIGYMPQVGLMRSGALLAEDS 76 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~-------~~i~~~~q~~~~~~~~~~~~~~ 76 (149)
.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++ +.++|+||++. ++...+
T Consensus 14 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~-----~~~~~t 88 (213)
T cd03259 14 RALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQDYA-----LFPHLT 88 (213)
T ss_pred eeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEcCchh-----hccCCc
Confidence 478999999999999999999999999999999999999999999999765 35899999843 333345
Q ss_pred hhHHHhhc----ccCc--hHHHHHHHhhhhHH---HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCCC
Q psy10767 77 PSYLLEYY----NCST--LEDVFLYLCEQDQI---LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 77 ~~~~~~~~----~~~~--~~~~~~~~~~~~~~---~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~~ 147 (149)
+.++..+. .... ..+.+..+++.+++ ..+.. ..+|||||||++|||||+.+|+++||||||+|||+..+
T Consensus 89 v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~ 166 (213)
T cd03259 89 VAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYP--HELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLR 166 (213)
T ss_pred HHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcCh--hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence 55554321 1111 12223333333333 22222 34699999999999999999999999999999998764
No 20
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=6.1e-39 Score=242.56 Aligned_cols=137 Identities=29% Similarity=0.351 Sum_probs=104.3
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec-------------ceeeeeecCcccccCc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV-------------RDIGYMPQVGLMRSGA 70 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~-------------~~i~~~~q~~~~~~~~ 70 (149)
.+++++||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++ +.++|++|++.
T Consensus 18 ~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~----- 92 (218)
T cd03255 18 QALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFN----- 92 (218)
T ss_pred eEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHHhhcEEEEeeccc-----
Confidence 589999999999999999999999999999999999999999999998754 24899999843
Q ss_pred ccccCChhHHHhhc----ccCc--hHHHHHHHhhhhHH---HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCC
Q psy10767 71 LLAEDSPSYLLEYY----NCST--LEDVFLYLCEQDQI---LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVG 141 (149)
Q Consensus 71 ~~~~~~~~~~~~~~----~~~~--~~~~~~~~~~~~~~---~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~g 141 (149)
++...++.++..+. .... ....+..+++.+++ ..+.. ..+|+|||||++|||||+.+|+++||||||++
T Consensus 93 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~LS~G~~qrv~la~al~~~p~lllLDEP~~~ 170 (218)
T cd03255 93 LLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYP--SELSGGQQQRVAIARALANDPKIILADEPTGN 170 (218)
T ss_pred cCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcCh--hhcCHHHHHHHHHHHHHccCCCEEEEcCCccc
Confidence 33334555554331 1111 12223333443333 22223 34599999999999999999999999999999
Q ss_pred CCcCCC
Q psy10767 142 LDPVLS 147 (149)
Q Consensus 142 LD~~~~ 147 (149)
||+..+
T Consensus 171 LD~~~~ 176 (218)
T cd03255 171 LDSETG 176 (218)
T ss_pred CCHHHH
Confidence 999765
No 21
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9e-39 Score=244.26 Aligned_cols=139 Identities=20% Similarity=0.280 Sum_probs=105.1
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec-------------ceeeeeecCcccccCc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV-------------RDIGYMPQVGLMRSGA 70 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~-------------~~i~~~~q~~~~~~~~ 70 (149)
++++++||++++||+++|+||||||||||+++|+|+++|++|+|+++|+++ +.++|++|++.
T Consensus 23 ~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~----- 97 (233)
T PRK11629 23 DVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHH----- 97 (233)
T ss_pred eeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHHHhccEEEEecCcc-----
Confidence 589999999999999999999999999999999999999999999999764 24899999843
Q ss_pred ccccCChhHHHhhc----ccCc--hHHHHHHHhhhhHHHH-hhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCC
Q psy10767 71 LLAEDSPSYLLEYY----NCST--LEDVFLYLCEQDQILF-SLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLD 143 (149)
Q Consensus 71 ~~~~~~~~~~~~~~----~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD 143 (149)
++...++.++..+. .... ..+.+..+++.+++.. .......+|||||||++||||++.+|+++||||||+|||
T Consensus 98 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD 177 (233)
T PRK11629 98 LLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLD 177 (233)
T ss_pred cCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCC
Confidence 33334555554431 1111 1222334444443311 111223469999999999999999999999999999999
Q ss_pred cCCC
Q psy10767 144 PVLS 147 (149)
Q Consensus 144 ~~~~ 147 (149)
+..+
T Consensus 178 ~~~~ 181 (233)
T PRK11629 178 ARNA 181 (233)
T ss_pred HHHH
Confidence 9765
No 22
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=5.6e-39 Score=254.91 Aligned_cols=138 Identities=34% Similarity=0.505 Sum_probs=107.0
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec--------ceeeeeecCcccccCcccccC
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV--------RDIGYMPQVGLMRSGALLAED 75 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~--------~~i~~~~q~~~~~~~~~~~~~ 75 (149)
.+++|+||++++||++||+||||||||||+++|+|+++|++|+|+++|.++ +.++|+||++. ++...
T Consensus 21 ~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~-----~~~~~ 95 (306)
T PRK13537 21 LVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGVVPQFDN-----LDPDF 95 (306)
T ss_pred EEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcEEEEeccCc-----CCCCC
Confidence 479999999999999999999999999999999999999999999999875 35999999843 34445
Q ss_pred ChhHHHhhc----ccCc--hHHHHHHHhhhhHH---HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCC
Q psy10767 76 SPSYLLEYY----NCST--LEDVFLYLCEQDQI---LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVL 146 (149)
Q Consensus 76 ~~~~~~~~~----~~~~--~~~~~~~~~~~~~~---~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~ 146 (149)
++.++..++ .... .......+++.+++ .++.+. .+|+|||||++|||||+++|++|||||||+|||+..
T Consensus 96 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--~LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~ 173 (306)
T PRK13537 96 TVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVG--ELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQA 173 (306)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchh--hCCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHH
Confidence 566665432 1111 12223334443333 233333 459999999999999999999999999999999986
Q ss_pred CC
Q psy10767 147 SF 148 (149)
Q Consensus 147 ~~ 148 (149)
+.
T Consensus 174 ~~ 175 (306)
T PRK13537 174 RH 175 (306)
T ss_pred HH
Confidence 53
No 23
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=9.4e-39 Score=240.93 Aligned_cols=139 Identities=29% Similarity=0.324 Sum_probs=104.1
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec------------ceeeeeecCcccccCcc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV------------RDIGYMPQVGLMRSGAL 71 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~------------~~i~~~~q~~~~~~~~~ 71 (149)
.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++ +.++|++|++. +
T Consensus 16 ~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~-----~ 90 (214)
T TIGR02673 16 AALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFR-----L 90 (214)
T ss_pred eeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEecChh-----h
Confidence 479999999999999999999999999999999999999999999999764 24899999843 2
Q ss_pred cccCChhHHHhhc----ccCc--hHHHHHHHhhhhHHHH-hhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCc
Q psy10767 72 LAEDSPSYLLEYY----NCST--LEDVFLYLCEQDQILF-SLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDP 144 (149)
Q Consensus 72 ~~~~~~~~~~~~~----~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~ 144 (149)
+...++.++..+. .... .+..+..+++.+++.. .......+|+|||||++|||||+.+|+++||||||+|||+
T Consensus 91 ~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~ 170 (214)
T TIGR02673 91 LPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDP 170 (214)
T ss_pred ccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCH
Confidence 3334454444331 1111 1222333444333311 1112235699999999999999999999999999999999
Q ss_pred CCC
Q psy10767 145 VLS 147 (149)
Q Consensus 145 ~~~ 147 (149)
..+
T Consensus 171 ~~~ 173 (214)
T TIGR02673 171 DLS 173 (214)
T ss_pred HHH
Confidence 765
No 24
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=9.4e-39 Score=242.01 Aligned_cols=137 Identities=20% Similarity=0.286 Sum_probs=103.9
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec-------------ceeeeeecCcccccCc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV-------------RDIGYMPQVGLMRSGA 70 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~-------------~~i~~~~q~~~~~~~~ 70 (149)
++++++||++.+||+++|+||||||||||+++|+|+++|++|+|.++|.++ +.++|++|++.+
T Consensus 19 ~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~---- 94 (221)
T TIGR02211 19 RVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHL---- 94 (221)
T ss_pred EeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHHHhcEEEEeccccc----
Confidence 589999999999999999999999999999999999999999999998764 248999998432
Q ss_pred ccccCChhHHHhhc----ccCc--hHHHHHHHhhhhHH---HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCC
Q psy10767 71 LLAEDSPSYLLEYY----NCST--LEDVFLYLCEQDQI---LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVG 141 (149)
Q Consensus 71 ~~~~~~~~~~~~~~----~~~~--~~~~~~~~~~~~~~---~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~g 141 (149)
+...++.++..+. .... ..+.+..+++.+++ ..+.. ..+|+|||||++|||||+.+|++|||||||++
T Consensus 95 -~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~LS~G~~qrv~laral~~~p~illlDEPt~~ 171 (221)
T TIGR02211 95 -LPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRP--SELSGGERQRVAIARALVNQPSLVLADEPTGN 171 (221)
T ss_pred -CCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCh--hhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCc
Confidence 3334455544331 1111 12223333343333 22222 34699999999999999999999999999999
Q ss_pred CCcCCC
Q psy10767 142 LDPVLS 147 (149)
Q Consensus 142 LD~~~~ 147 (149)
||+..+
T Consensus 172 LD~~~~ 177 (221)
T TIGR02211 172 LDNNNA 177 (221)
T ss_pred CCHHHH
Confidence 998765
No 25
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=7.3e-39 Score=257.64 Aligned_cols=137 Identities=28% Similarity=0.381 Sum_probs=106.9
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec------------ceeeeeecCcccccCcc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV------------RDIGYMPQVGLMRSGAL 71 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~------------~~i~~~~q~~~~~~~~~ 71 (149)
.+++|+||++++||++||+||||||||||+|+|+|+++|++|+|.++|.++ ++|+|+||+. .+
T Consensus 19 ~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~-----~l 93 (343)
T TIGR02314 19 QALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHF-----NL 93 (343)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEECCc-----cc
Confidence 589999999999999999999999999999999999999999999999865 2599999984 33
Q ss_pred cccCChhHHHhhc----ccCc--hHHHHHHHhhhhHH---HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCC
Q psy10767 72 LAEDSPSYLLEYY----NCST--LEDVFLYLCEQDQI---LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGL 142 (149)
Q Consensus 72 ~~~~~~~~~~~~~----~~~~--~~~~~~~~~~~~~~---~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gL 142 (149)
+...++.++..+. .... ..+...++++.+++ .+.+. ..|||||||||+|||||+.+|++|||||||++|
T Consensus 94 ~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~--~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~L 171 (343)
T TIGR02314 94 LSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYP--SNLSGGQKQRVAIARALASNPKVLLCDEATSAL 171 (343)
T ss_pred cccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCCh--hhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccC
Confidence 4445566555432 1111 12233444444443 22333 345999999999999999999999999999999
Q ss_pred CcCCC
Q psy10767 143 DPVLS 147 (149)
Q Consensus 143 D~~~~ 147 (149)
|+..+
T Consensus 172 D~~t~ 176 (343)
T TIGR02314 172 DPATT 176 (343)
T ss_pred CHHHH
Confidence 99765
No 26
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=6.4e-39 Score=253.98 Aligned_cols=137 Identities=34% Similarity=0.478 Sum_probs=106.3
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec--------ceeeeeecCcccccCcccccC
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV--------RDIGYMPQVGLMRSGALLAED 75 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~--------~~i~~~~q~~~~~~~~~~~~~ 75 (149)
.+++|+||++++||++||+||||||||||+|+|+|+++|++|+|.++|.++ +.++|+||++. ++...
T Consensus 7 ~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~-----~~~~~ 81 (302)
T TIGR01188 7 KAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYAS-----VDEDL 81 (302)
T ss_pred eEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCC-----CCCCC
Confidence 579999999999999999999999999999999999999999999999765 25999999843 33445
Q ss_pred ChhHHHhhc----ccCc--hHHHHHHHhhhhHH---HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCC
Q psy10767 76 SPSYLLEYY----NCST--LEDVFLYLCEQDQI---LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVL 146 (149)
Q Consensus 76 ~~~~~~~~~----~~~~--~~~~~~~~~~~~~~---~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~ 146 (149)
++.++..+. .... ....+..+++.+++ .++... .+|||||||++|||||+++|++|||||||+|||+..
T Consensus 82 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~ 159 (302)
T TIGR01188 82 TGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVG--TYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRT 159 (302)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchh--hCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHH
Confidence 555555432 1111 12233444444443 223333 459999999999999999999999999999999976
Q ss_pred C
Q psy10767 147 S 147 (149)
Q Consensus 147 ~ 147 (149)
+
T Consensus 160 ~ 160 (302)
T TIGR01188 160 R 160 (302)
T ss_pred H
Confidence 5
No 27
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=9.2e-39 Score=239.86 Aligned_cols=138 Identities=27% Similarity=0.289 Sum_probs=104.7
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec------ceeeeeecCcccccCcccccCCh
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV------RDIGYMPQVGLMRSGALLAEDSP 77 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~------~~i~~~~q~~~~~~~~~~~~~~~ 77 (149)
.+++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++ +.++|++|++.. .....++
T Consensus 14 ~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~----~~~~~tv 89 (205)
T cd03226 14 EILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQDVDY----QLFTDSV 89 (205)
T ss_pred ceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecChhh----hhhhccH
Confidence 579999999999999999999999999999999999999999999999875 369999998421 1112355
Q ss_pred hHHHhhcc--cCchHHHHHHHhhhhHH---HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCCC
Q psy10767 78 SYLLEYYN--CSTLEDVFLYLCEQDQI---LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 78 ~~~~~~~~--~~~~~~~~~~~~~~~~~---~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~~ 147 (149)
.++..+.. .......+..+++.+++ ..+.. ..+|+|||||++|||||+.+|+++||||||++||+..+
T Consensus 90 ~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~ 162 (205)
T cd03226 90 REELLLGLKELDAGNEQAETVLKDLDLYALKERHP--LSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNM 162 (205)
T ss_pred HHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCc--hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHH
Confidence 55544321 11112233344444433 22222 34699999999999999999999999999999999765
No 28
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.7e-39 Score=250.94 Aligned_cols=138 Identities=30% Similarity=0.359 Sum_probs=110.0
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCe---ec-------ceeeeeecCcccccCcccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSAR---TV-------RDIGYMPQVGLMRSGALLA 73 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~---~~-------~~i~~~~q~~~~~~~~~~~ 73 (149)
.+++|||++|+.||.+|++||||||||||||+|+|++.|++|.|.++|+ +. ++|||+||+ ..+++
T Consensus 16 ~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~-----YALF~ 90 (345)
T COG1118 16 GALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQH-----YALFP 90 (345)
T ss_pred cccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcceeEEEec-----hhhcc
Confidence 5788999999999999999999999999999999999999999999998 43 579999998 44566
Q ss_pred cCChhHHHhhcc----cC----chHHHHHHHhhhhHH---HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCC
Q psy10767 74 EDSPSYLLEYYN----CS----TLEDVFLYLCEQDQI---LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGL 142 (149)
Q Consensus 74 ~~~~~~~~~~~~----~~----~~~~~~~~~~~~~~~---~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gL 142 (149)
.+++.+|..|-- .. .....+.++++.+.+ ..++... ||||||||||+||||+.+|++|+||||+++|
T Consensus 91 HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~Q--LSGGQrQRVALARALA~eP~vLLLDEPf~AL 168 (345)
T COG1118 91 HMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQ--LSGGQRQRVALARALAVEPKVLLLDEPFGAL 168 (345)
T ss_pred cchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchh--cChHHHHHHHHHHHhhcCCCeEeecCCchhh
Confidence 777777766531 11 123334444444433 3344444 4999999999999999999999999999999
Q ss_pred CcCCCC
Q psy10767 143 DPVLSF 148 (149)
Q Consensus 143 D~~~~~ 148 (149)
|...|+
T Consensus 169 Da~vr~ 174 (345)
T COG1118 169 DAKVRK 174 (345)
T ss_pred hHHHHH
Confidence 987653
No 29
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=4e-39 Score=239.04 Aligned_cols=137 Identities=33% Similarity=0.425 Sum_probs=111.2
Q ss_pred ceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec--------ceeeeeecCcccccCcccccCC
Q psy10767 5 SASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV--------RDIGYMPQVGLMRSGALLAEDS 76 (149)
Q Consensus 5 ~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~--------~~i~~~~q~~~~~~~~~~~~~~ 76 (149)
+++|+||.+.+|+++||+|||||||||+||+|++++.|++|.|+++|.+. +.||.++.+ ..++.+++
T Consensus 17 AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGVl~~e-----~glY~RlT 91 (245)
T COG4555 17 AVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVLFGE-----RGLYARLT 91 (245)
T ss_pred hhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhcceecCC-----cChhhhhh
Confidence 68999999999999999999999999999999999999999999999775 458888854 45566778
Q ss_pred hhHHHhhcc----cCc--hHHHHHHHhhhhHH---HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCCC
Q psy10767 77 PSYLLEYYN----CST--LEDVFLYLCEQDQI---LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 77 ~~~~~~~~~----~~~--~~~~~~~~~~~~~~---~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~~ 147 (149)
+.++..+++ ... .+.+...+.+.+++ .+++.... |.||||||+||||++++|++++|||||+|||...+
T Consensus 92 ~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~--S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~ 169 (245)
T COG4555 92 ARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEF--STGMKQKVAIARALVHDPSILVLDEPTSGLDIRTR 169 (245)
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhh--chhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHH
Confidence 888776652 221 23334444444433 56666666 99999999999999999999999999999998765
Q ss_pred C
Q psy10767 148 F 148 (149)
Q Consensus 148 ~ 148 (149)
.
T Consensus 170 r 170 (245)
T COG4555 170 R 170 (245)
T ss_pred H
Confidence 3
No 30
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.3e-38 Score=243.51 Aligned_cols=137 Identities=30% Similarity=0.449 Sum_probs=103.7
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec------------ceeeeeecCcccccCcc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV------------RDIGYMPQVGLMRSGAL 71 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~------------~~i~~~~q~~~~~~~~~ 71 (149)
.+++|+||++.+||+++|+||||||||||+|+|+|+++|++|+|.++|.++ +.++|++|++. +
T Consensus 14 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~-----~ 88 (235)
T cd03261 14 TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGA-----L 88 (235)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcceEEEccCcc-----c
Confidence 479999999999999999999999999999999999999999999999754 24899999843 3
Q ss_pred cccCChhHHHhhc----c-cCc--hHHHHHHHhhhhHH---HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCC
Q psy10767 72 LAEDSPSYLLEYY----N-CST--LEDVFLYLCEQDQI---LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVG 141 (149)
Q Consensus 72 ~~~~~~~~~~~~~----~-~~~--~~~~~~~~~~~~~~---~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~g 141 (149)
+...++.++..+. . ... ....+..+++..++ ..+.. ..+|||||||++|||||+.+|+++||||||+|
T Consensus 89 ~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~LSgG~~qrv~ia~al~~~p~llllDEPt~~ 166 (235)
T cd03261 89 FDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYP--AELSGGMKKRVALARALALDPELLLYDEPTAG 166 (235)
T ss_pred CCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCCh--hhCCHHHHHHHHHHHHHhcCCCEEEecCCccc
Confidence 3344555554332 1 111 11223333333333 22222 34699999999999999999999999999999
Q ss_pred CCcCCC
Q psy10767 142 LDPVLS 147 (149)
Q Consensus 142 LD~~~~ 147 (149)
||+..+
T Consensus 167 LD~~~~ 172 (235)
T cd03261 167 LDPIAS 172 (235)
T ss_pred CCHHHH
Confidence 999765
No 31
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-38 Score=257.14 Aligned_cols=138 Identities=34% Similarity=0.396 Sum_probs=109.0
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec-------ceeeeeecCcccccCcccccCC
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV-------RDIGYMPQVGLMRSGALLAEDS 76 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~-------~~i~~~~q~~~~~~~~~~~~~~ 76 (149)
.+++|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++ ++++|+||+ ..+++..+
T Consensus 20 ~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~-----~~lfp~~t 94 (351)
T PRK11432 20 TVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICMVFQS-----YALFPHMS 94 (351)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCC-----cccCCCCC
Confidence 368999999999999999999999999999999999999999999999875 569999998 34455566
Q ss_pred hhHHHhhc----ccCc--hHHHHHHHhhhhHH---HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCCC
Q psy10767 77 PSYLLEYY----NCST--LEDVFLYLCEQDQI---LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 77 ~~~~~~~~----~~~~--~~~~~~~~~~~~~~---~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~~ 147 (149)
+.++..+. .... ..+.+.++++..++ .++.. ..+||||||||+|||||+.+|++|||||||++||+..|
T Consensus 95 v~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~--~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r 172 (351)
T PRK11432 95 LGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYV--DQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLR 172 (351)
T ss_pred HHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCCh--hhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHH
Confidence 66666542 1111 12334444444433 23333 34599999999999999999999999999999999765
Q ss_pred C
Q psy10767 148 F 148 (149)
Q Consensus 148 ~ 148 (149)
.
T Consensus 173 ~ 173 (351)
T PRK11432 173 R 173 (351)
T ss_pred H
Confidence 3
No 32
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=1.7e-38 Score=239.48 Aligned_cols=141 Identities=27% Similarity=0.326 Sum_probs=104.5
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec----ceeeeeecCcccccCcccccCChhH
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV----RDIGYMPQVGLMRSGALLAEDSPSY 79 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~----~~i~~~~q~~~~~~~~~~~~~~~~~ 79 (149)
.+++++||++.+||+++|+||||||||||+++|+|+++|++|+|.++|.++ +.++|++|++.+.. ....++.+
T Consensus 13 ~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~---~~~~tv~e 89 (213)
T cd03235 13 PVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRSIDR---DFPISVRD 89 (213)
T ss_pred EeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEecccccccc---CCCCcHHH
Confidence 479999999999999999999999999999999999999999999999764 46999999853211 01134555
Q ss_pred HHhhccc--------C-c-hHHHHHHHhhhhHHHH-hhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCCC
Q psy10767 80 LLEYYNC--------S-T-LEDVFLYLCEQDQILF-SLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 80 ~~~~~~~--------~-~-~~~~~~~~~~~~~~~~-~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~~ 147 (149)
+..+... . . ..+....+++.+++.. .......+|||||||++|||||+.+|+++||||||+|||+..+
T Consensus 90 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~ 168 (213)
T cd03235 90 VVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQ 168 (213)
T ss_pred HHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHH
Confidence 5433111 0 1 1222333444433311 1122335699999999999999999999999999999999765
No 33
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=1.6e-38 Score=239.16 Aligned_cols=138 Identities=26% Similarity=0.303 Sum_probs=103.5
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec---------ceeeeeecCcccccCccccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV---------RDIGYMPQVGLMRSGALLAE 74 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~---------~~i~~~~q~~~~~~~~~~~~ 74 (149)
.+++++||++.+|++++|+||||||||||+++|+|+++|++|+|.++|.++ +.++|++|++.. ....
T Consensus 15 ~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~----~~~~ 90 (211)
T cd03225 15 PALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDD----QFFG 90 (211)
T ss_pred eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEEecChhh----hcCC
Confidence 579999999999999999999999999999999999999999999999764 348999998421 1223
Q ss_pred CChhHHHhhc----ccCc--hHHHHHHHhhhhHH---HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcC
Q psy10767 75 DSPSYLLEYY----NCST--LEDVFLYLCEQDQI---LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPV 145 (149)
Q Consensus 75 ~~~~~~~~~~----~~~~--~~~~~~~~~~~~~~---~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~ 145 (149)
.++.++..+. .... ....+..+++.+++ ..+.. ..+|||||||++|||||+.+|+++||||||+|||+.
T Consensus 91 ~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~ 168 (211)
T cd03225 91 PTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSP--FTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPA 168 (211)
T ss_pred CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCc--ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHH
Confidence 3444444321 1111 12223334443333 22223 346999999999999999999999999999999997
Q ss_pred CC
Q psy10767 146 LS 147 (149)
Q Consensus 146 ~~ 147 (149)
.+
T Consensus 169 ~~ 170 (211)
T cd03225 169 GR 170 (211)
T ss_pred HH
Confidence 65
No 34
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=3.8e-38 Score=237.47 Aligned_cols=139 Identities=29% Similarity=0.380 Sum_probs=104.0
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec-------ceeeeeecCcccccCcccccCC
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV-------RDIGYMPQVGLMRSGALLAEDS 76 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~-------~~i~~~~q~~~~~~~~~~~~~~ 76 (149)
.+++|+||++.+||+++|+||||||||||+++|+|+++|++|+|.++|.++ +.++|++|++. ++...+
T Consensus 14 ~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q~~~-----~~~~~t 88 (213)
T cd03301 14 TALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQNYA-----LYPHMT 88 (213)
T ss_pred eeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEEecChh-----hccCCC
Confidence 579999999999999999999999999999999999999999999999765 24899999843 233344
Q ss_pred hhHHHhhc----ccCc--hHHHHHHHhhhhHHHH-hhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCCC
Q psy10767 77 PSYLLEYY----NCST--LEDVFLYLCEQDQILF-SLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 77 ~~~~~~~~----~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~~ 147 (149)
+.++..+. .... ..+.+..+++..++.. .......+|+|||||++||||++.+|+++||||||+|||+..+
T Consensus 89 v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~ 166 (213)
T cd03301 89 VYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLR 166 (213)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence 55544331 1111 1222333334333311 1122234599999999999999999999999999999999764
No 35
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3e-38 Score=239.36 Aligned_cols=137 Identities=30% Similarity=0.388 Sum_probs=104.4
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec--------ceeeeeecCcccccCcccccC
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV--------RDIGYMPQVGLMRSGALLAED 75 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~--------~~i~~~~q~~~~~~~~~~~~~ 75 (149)
.+++|+||++.+||+++|+||||||||||+++|+|+++|++|+|.++|.++ +.++|++|++.+ ....
T Consensus 14 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~-----~~~~ 88 (220)
T cd03265 14 EAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVFQDLSV-----DDEL 88 (220)
T ss_pred EeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEecCCccc-----cccC
Confidence 478999999999999999999999999999999999999999999999764 358999998532 3334
Q ss_pred ChhHHHhhc----ccCc--hHHHHHHHhhhhHH---HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCC
Q psy10767 76 SPSYLLEYY----NCST--LEDVFLYLCEQDQI---LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVL 146 (149)
Q Consensus 76 ~~~~~~~~~----~~~~--~~~~~~~~~~~~~~---~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~ 146 (149)
++.++..+. .... ..+.+..+++.+++ ..... ..+|+|||||++||||++.+|+++||||||++||+..
T Consensus 89 tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~ 166 (220)
T cd03265 89 TGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLV--KTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQT 166 (220)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCh--hhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHH
Confidence 454444321 1111 12233344444433 22233 3459999999999999999999999999999999976
Q ss_pred C
Q psy10767 147 S 147 (149)
Q Consensus 147 ~ 147 (149)
+
T Consensus 167 ~ 167 (220)
T cd03265 167 R 167 (220)
T ss_pred H
Confidence 4
No 36
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=3.4e-39 Score=239.17 Aligned_cols=139 Identities=30% Similarity=0.439 Sum_probs=110.5
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeecc----------eeeeeecCcccccCcccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVR----------DIGYMPQVGLMRSGALLA 73 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~~----------~i~~~~q~~~~~~~~~~~ 73 (149)
.+++++||++++||++|++|||||||||.+.++.|+.+|++|.|.+++.++. .|||+||++ .++.
T Consensus 18 ~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGigYLpQE~-----SIFr 92 (243)
T COG1137 18 KVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIGYLPQEA-----SIFR 92 (243)
T ss_pred eeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCcccccccc-----hHhh
Confidence 4789999999999999999999999999999999999999999999998872 389999994 4556
Q ss_pred cCChhHHHhhc----ccCch----HHHHHHHhhhhHH-HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCc
Q psy10767 74 EDSPSYLLEYY----NCSTL----EDVFLYLCEQDQI-LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDP 144 (149)
Q Consensus 74 ~~~~~~~~~~~----~~~~~----~~~~~~~~~~~~~-~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~ 144 (149)
..++.+|.... ..... +...+.+++.+.+ ..+.....+||||||+|+.|||||+.+|++++|||||+|+||
T Consensus 93 ~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~fiLLDEPFAGVDP 172 (243)
T COG1137 93 KLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDP 172 (243)
T ss_pred cCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCCCEEEecCCccCCCc
Confidence 66666665432 11111 1223455555555 223344567799999999999999999999999999999999
Q ss_pred CCC
Q psy10767 145 VLS 147 (149)
Q Consensus 145 ~~~ 147 (149)
.+.
T Consensus 173 iaV 175 (243)
T COG1137 173 IAV 175 (243)
T ss_pred hhH
Confidence 763
No 37
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=100.00 E-value=3.4e-38 Score=234.29 Aligned_cols=138 Identities=25% Similarity=0.303 Sum_probs=102.7
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec-----------ceeeeeecCcccccCccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV-----------RDIGYMPQVGLMRSGALL 72 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~-----------~~i~~~~q~~~~~~~~~~ 72 (149)
.+++++||++.+||+++|+||||||||||+++|+|+++|++|+|.++|.++ +.++|++|++.. .++
T Consensus 6 ~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~---~~~ 82 (190)
T TIGR01166 6 EVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDD---QLF 82 (190)
T ss_pred ceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhh---ccc
Confidence 579999999999999999999999999999999999999999999999764 248999998421 111
Q ss_pred ccCChhHHHhhc----ccCc--hHHHHHHHhhhhHH---HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCC
Q psy10767 73 AEDSPSYLLEYY----NCST--LEDVFLYLCEQDQI---LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLD 143 (149)
Q Consensus 73 ~~~~~~~~~~~~----~~~~--~~~~~~~~~~~~~~---~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD 143 (149)
..++.++..+. .... ..+.+..+++.+++ ..+.. ..+|+|||||++|||||+.+|+++||||||+|||
T Consensus 83 -~~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~LS~G~~qrv~laral~~~p~llllDEPt~~LD 159 (190)
T TIGR01166 83 -AADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPT--HCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLD 159 (190)
T ss_pred -cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCCh--hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence 23444444331 1111 11223333333333 22223 3459999999999999999999999999999999
Q ss_pred cCCC
Q psy10767 144 PVLS 147 (149)
Q Consensus 144 ~~~~ 147 (149)
+..+
T Consensus 160 ~~~~ 163 (190)
T TIGR01166 160 PAGR 163 (190)
T ss_pred HHHH
Confidence 8764
No 38
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=2.5e-38 Score=255.52 Aligned_cols=138 Identities=31% Similarity=0.396 Sum_probs=108.8
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec-------ceeeeeecCcccccCcccccCC
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV-------RDIGYMPQVGLMRSGALLAEDS 76 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~-------~~i~~~~q~~~~~~~~~~~~~~ 76 (149)
.+++++||++++||+++|+||||||||||||+|+|+++|++|+|.++|+++ +.++|+||+ ..+++..+
T Consensus 18 ~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v~Q~-----~~lfp~~t 92 (353)
T TIGR03265 18 TALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIVFQS-----YALFPNLT 92 (353)
T ss_pred EEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCC-----cccCCCCc
Confidence 368999999999999999999999999999999999999999999999876 469999998 44455566
Q ss_pred hhHHHhhc----ccC--chHHHHHHHhhhhHH---HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCCC
Q psy10767 77 PSYLLEYY----NCS--TLEDVFLYLCEQDQI---LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 77 ~~~~~~~~----~~~--~~~~~~~~~~~~~~~---~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~~ 147 (149)
+.++..+. ... .....+.++++.+++ .++... .+||||||||+|||||+.+|+++||||||++||+..|
T Consensus 93 v~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~--~LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r 170 (353)
T TIGR03265 93 VADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPG--QLSGGQQQRVALARALATSPGLLLLDEPLSALDARVR 170 (353)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChh--hCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence 66666542 111 112334444444443 233333 4599999999999999999999999999999998765
Q ss_pred C
Q psy10767 148 F 148 (149)
Q Consensus 148 ~ 148 (149)
.
T Consensus 171 ~ 171 (353)
T TIGR03265 171 E 171 (353)
T ss_pred H
Confidence 3
No 39
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=2.7e-38 Score=254.22 Aligned_cols=138 Identities=36% Similarity=0.503 Sum_probs=105.9
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec--------ceeeeeecCcccccCcccccC
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV--------RDIGYMPQVGLMRSGALLAED 75 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~--------~~i~~~~q~~~~~~~~~~~~~ 75 (149)
.+++|+||+|++|+++||+||||||||||+++|+|+++|++|+|.++|.++ +.++|+||+.. ++...
T Consensus 55 ~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~-----~~~~~ 129 (340)
T PRK13536 55 AVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGVVPQFDN-----LDLEF 129 (340)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccEEEEeCCcc-----CCCCC
Confidence 479999999999999999999999999999999999999999999999875 35999999843 33444
Q ss_pred ChhHHHhhc----ccCc--hHHHHHHHhhhhHH---HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCC
Q psy10767 76 SPSYLLEYY----NCST--LEDVFLYLCEQDQI---LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVL 146 (149)
Q Consensus 76 ~~~~~~~~~----~~~~--~~~~~~~~~~~~~~---~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~ 146 (149)
++.++..++ .... ..+....+++.+++ .++.+. .+|+|||||++|||||+++|+++||||||+||||..
T Consensus 130 tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~--~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~ 207 (340)
T PRK13536 130 TVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVS--DLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHA 207 (340)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChh--hCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHH
Confidence 555555432 1111 12223333333333 223333 459999999999999999999999999999999986
Q ss_pred CC
Q psy10767 147 SF 148 (149)
Q Consensus 147 ~~ 148 (149)
+.
T Consensus 208 r~ 209 (340)
T PRK13536 208 RH 209 (340)
T ss_pred HH
Confidence 53
No 40
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=5.4e-38 Score=243.88 Aligned_cols=139 Identities=26% Similarity=0.265 Sum_probs=105.8
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec----ceeeeeecCcccccCcccccCChhH
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV----RDIGYMPQVGLMRSGALLAEDSPSY 79 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~----~~i~~~~q~~~~~~~~~~~~~~~~~ 79 (149)
.+++++||++.+||+++|+||||||||||+++|+|+++|++|+|.++|.++ +.++|++|++. ++...++.+
T Consensus 26 ~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~-----l~~~~tv~e 100 (257)
T PRK11247 26 TVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQDAR-----LLPWKKVID 100 (257)
T ss_pred ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEecCcc-----CCCCCcHHH
Confidence 478999999999999999999999999999999999999999999998764 46999999843 334456666
Q ss_pred HHhhcccCchHHHHHHHhhhhHHHH-hhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCCC
Q psy10767 80 LLEYYNCSTLEDVFLYLCEQDQILF-SLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~~ 147 (149)
+..+.........+..+++.+++.. .......+|||||||++|||||+.+|+++||||||+|||+..+
T Consensus 101 nl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~ 169 (257)
T PRK11247 101 NVGLGLKGQWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTR 169 (257)
T ss_pred HHHhcccchHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHH
Confidence 6543211111223333444433311 1122234699999999999999999999999999999999765
No 41
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=4.3e-38 Score=236.54 Aligned_cols=137 Identities=26% Similarity=0.371 Sum_probs=105.4
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec-------ceeeeeecCcccccCcccccCC
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV-------RDIGYMPQVGLMRSGALLAEDS 76 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~-------~~i~~~~q~~~~~~~~~~~~~~ 76 (149)
++++++||++.+|++++|+||||||||||+++|+|+.+|++|+|.++|.++ +.++|++|++ .++...+
T Consensus 14 ~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~-----~~~~~~t 88 (208)
T cd03268 14 RVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIEAP-----GFYPNLT 88 (208)
T ss_pred EeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEecCCC-----ccCccCc
Confidence 579999999999999999999999999999999999999999999999765 3589999984 3334455
Q ss_pred hhHHHhhcc--cCchHHHHHHHhhhhHH---HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCCC
Q psy10767 77 PSYLLEYYN--CSTLEDVFLYLCEQDQI---LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 77 ~~~~~~~~~--~~~~~~~~~~~~~~~~~---~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~~ 147 (149)
+.++..+.. .....+....+++..++ ..+... .+|+|||||++||||++.+|+++||||||++||+..+
T Consensus 89 v~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~ 162 (208)
T cd03268 89 ARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVK--GFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGI 162 (208)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhhHh--hCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHH
Confidence 555554321 11112233333333332 233333 3599999999999999999999999999999999765
No 42
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3e-38 Score=237.69 Aligned_cols=137 Identities=31% Similarity=0.467 Sum_probs=104.4
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec-----ceeeeeecCcccccCcccccCChh
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV-----RDIGYMPQVGLMRSGALLAEDSPS 78 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~-----~~i~~~~q~~~~~~~~~~~~~~~~ 78 (149)
.+++++||++.+|++++|+||||||||||+++|+|+++|++|+|.++|.++ +.++|++|++. ++...++.
T Consensus 14 ~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~-----~~~~~tv~ 88 (210)
T cd03269 14 TALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEERG-----LYPKMKVI 88 (210)
T ss_pred EEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEeccCCc-----CCcCCcHH
Confidence 478999999999999999999999999999999999999999999999765 35999999843 33334555
Q ss_pred HHHhhc----ccC--chHHHHHHHhhhhHH---HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCCC
Q psy10767 79 YLLEYY----NCS--TLEDVFLYLCEQDQI---LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 79 ~~~~~~----~~~--~~~~~~~~~~~~~~~---~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~~ 147 (149)
++..+. ... ...+.+.++++..++ ..... ..+|+|||||++||||++.+|+++||||||++||+..+
T Consensus 89 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~ 164 (210)
T cd03269 89 DQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRV--EELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNV 164 (210)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcH--hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHH
Confidence 554332 111 112223333443333 22222 34599999999999999999999999999999998765
No 43
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=100.00 E-value=6.2e-38 Score=235.09 Aligned_cols=139 Identities=24% Similarity=0.250 Sum_probs=105.4
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec--------ceeeeeecCcccccCcccccC
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV--------RDIGYMPQVGLMRSGALLAED 75 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~--------~~i~~~~q~~~~~~~~~~~~~ 75 (149)
.+++++||+|.+||++||+|+||||||||+++|+|+++|++|+|.++|.++ +.++|++|++ .+....
T Consensus 14 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~-----~~~~~~ 88 (201)
T cd03231 14 ALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGHAP-----GIKTTL 88 (201)
T ss_pred eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEEecccc-----ccCCCc
Confidence 478999999999999999999999999999999999999999999998765 2589999873 233345
Q ss_pred ChhHHHhhcccCchHHHHHHHhhhhHHHH-hhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCCC
Q psy10767 76 SPSYLLEYYNCSTLEDVFLYLCEQDQILF-SLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~~ 147 (149)
++.++..+......++....+++..++.. .......+|+|||||++||||++.+|+++||||||++||+..+
T Consensus 89 tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~ 161 (201)
T cd03231 89 SVLENLRFWHADHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGV 161 (201)
T ss_pred CHHHHHHhhcccccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHH
Confidence 56665544321112233334444333311 1112234699999999999999999999999999999999765
No 44
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=6.1e-38 Score=240.58 Aligned_cols=139 Identities=28% Similarity=0.339 Sum_probs=103.2
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec------------ceeeeeecCcccccCcc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV------------RDIGYMPQVGLMRSGAL 71 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~------------~~i~~~~q~~~~~~~~~ 71 (149)
++++++||++.+|++++|+||||||||||+++|+|+++|++|+|.++|.++ +.++|+||++.+
T Consensus 16 ~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~----- 90 (243)
T TIGR02315 16 QALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNL----- 90 (243)
T ss_pred ceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCcc-----
Confidence 579999999999999999999999999999999999999999999999764 238999998432
Q ss_pred cccCChhHHHhhcc------------cC--chHHHHHHHhhhhHHHH-hhcCCCCCChhHHHHHHHHHHHhcCCCEEEEc
Q psy10767 72 LAEDSPSYLLEYYN------------CS--TLEDVFLYLCEQDQILF-SLVGSESAFGGQQRRVSFAVSLIHDPKILILD 136 (149)
Q Consensus 72 ~~~~~~~~~~~~~~------------~~--~~~~~~~~~~~~~~~~~-~~~~~~~~sgGqkqrv~iaral~~~p~illlD 136 (149)
+...++.++..+.. .. ...+.+..+++.+++.. .......+|||||||++|||||+.+|+++|||
T Consensus 91 ~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllD 170 (243)
T TIGR02315 91 IERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILAD 170 (243)
T ss_pred cccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 33344444443210 00 01122333333333311 11222346999999999999999999999999
Q ss_pred CCCCCCCcCCC
Q psy10767 137 EPTVGLDPVLS 147 (149)
Q Consensus 137 EPt~gLD~~~~ 147 (149)
|||++||+..+
T Consensus 171 EPt~~LD~~~~ 181 (243)
T TIGR02315 171 EPIASLDPKTS 181 (243)
T ss_pred CCcccCCHHHH
Confidence 99999999765
No 45
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=5e-38 Score=237.89 Aligned_cols=137 Identities=30% Similarity=0.522 Sum_probs=104.3
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec--------ceeeeeecCcccccCcccccC
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV--------RDIGYMPQVGLMRSGALLAED 75 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~--------~~i~~~~q~~~~~~~~~~~~~ 75 (149)
++++|+||++.+||+++|+||||||||||+++|+|+++|++|+|.++|.++ +.++|++|++. ++...
T Consensus 16 ~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~-----~~~~~ 90 (220)
T cd03263 16 PAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYCPQFDA-----LFDEL 90 (220)
T ss_pred eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEEecCcCC-----ccccC
Confidence 589999999999999999999999999999999999999999999999865 34899999843 33334
Q ss_pred ChhHHHhhc----ccCc--hHHHHHHHhhhhHH---HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCC
Q psy10767 76 SPSYLLEYY----NCST--LEDVFLYLCEQDQI---LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVL 146 (149)
Q Consensus 76 ~~~~~~~~~----~~~~--~~~~~~~~~~~~~~---~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~ 146 (149)
++.++..+. .... ..+.+..+++..++ ..... ..+|+|||||++|||||+.+|+++||||||++||+..
T Consensus 91 tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~ 168 (220)
T cd03263 91 TVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRA--RTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPAS 168 (220)
T ss_pred CHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChh--hhCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHH
Confidence 455544331 1111 11223333333333 22333 3459999999999999999999999999999999976
Q ss_pred C
Q psy10767 147 S 147 (149)
Q Consensus 147 ~ 147 (149)
+
T Consensus 169 ~ 169 (220)
T cd03263 169 R 169 (220)
T ss_pred H
Confidence 4
No 46
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=3.7e-38 Score=255.08 Aligned_cols=138 Identities=22% Similarity=0.276 Sum_probs=108.3
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec-------------ceeeeeecCcccccCc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV-------------RDIGYMPQVGLMRSGA 70 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~-------------~~i~~~~q~~~~~~~~ 70 (149)
.+++|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++ +.++|+||. ..
T Consensus 7 ~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~-----~~ 81 (363)
T TIGR01186 7 KGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQ-----FA 81 (363)
T ss_pred eeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECC-----Cc
Confidence 478999999999999999999999999999999999999999999999764 259999998 44
Q ss_pred ccccCChhHHHhhc----ccCc--hHHHHHHHhhhhHH---HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCC
Q psy10767 71 LLAEDSPSYLLEYY----NCST--LEDVFLYLCEQDQI---LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVG 141 (149)
Q Consensus 71 ~~~~~~~~~~~~~~----~~~~--~~~~~~~~~~~~~~---~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~g 141 (149)
+++..++.++..+. .... ..+.+.++++.+++ ..+... .+||||||||+|||||+.+|++|||||||++
T Consensus 82 l~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~--~LSGGq~QRV~lARAL~~~p~iLLlDEP~sa 159 (363)
T TIGR01186 82 LFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPD--ELSGGMQQRVGLARALAAEPDILLMDEAFSA 159 (363)
T ss_pred CCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChh--hCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 45555666665432 1111 12334444444443 233333 4599999999999999999999999999999
Q ss_pred CCcCCCC
Q psy10767 142 LDPVLSF 148 (149)
Q Consensus 142 LD~~~~~ 148 (149)
||+..+.
T Consensus 160 LD~~~r~ 166 (363)
T TIGR01186 160 LDPLIRD 166 (363)
T ss_pred CCHHHHH
Confidence 9998653
No 47
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=5.8e-38 Score=236.47 Aligned_cols=139 Identities=29% Similarity=0.346 Sum_probs=103.8
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec------------ceeeeeecCcccccCcc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV------------RDIGYMPQVGLMRSGAL 71 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~------------~~i~~~~q~~~~~~~~~ 71 (149)
.+++|+||++.+|++++|+||||||||||+++|+|+++|++|+|.++|.++ +.++|++|++. +
T Consensus 15 ~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~-----~ 89 (214)
T cd03292 15 AALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFR-----L 89 (214)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHheEEEecCch-----h
Confidence 579999999999999999999999999999999999999999999999754 24899999843 3
Q ss_pred cccCChhHHHhhc----ccCc--hHHHHHHHhhhhHHHH-hhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCc
Q psy10767 72 LAEDSPSYLLEYY----NCST--LEDVFLYLCEQDQILF-SLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDP 144 (149)
Q Consensus 72 ~~~~~~~~~~~~~----~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~ 144 (149)
+...++.++..+. .... ..+.+..+++..++.. .......+|+|||||++|||||+.+|+++||||||++||+
T Consensus 90 ~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~ 169 (214)
T cd03292 90 LPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDP 169 (214)
T ss_pred ccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCH
Confidence 3334455544331 1111 1222333333333311 1112234699999999999999999999999999999999
Q ss_pred CCC
Q psy10767 145 VLS 147 (149)
Q Consensus 145 ~~~ 147 (149)
..+
T Consensus 170 ~~~ 172 (214)
T cd03292 170 DTT 172 (214)
T ss_pred HHH
Confidence 765
No 48
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=6.4e-38 Score=237.00 Aligned_cols=137 Identities=31% Similarity=0.458 Sum_probs=105.4
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec--------ceeeeeecCcccccCcccccC
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV--------RDIGYMPQVGLMRSGALLAED 75 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~--------~~i~~~~q~~~~~~~~~~~~~ 75 (149)
++++++||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++ +.++|++|++. ++...
T Consensus 19 ~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~-----~~~~~ 93 (218)
T cd03266 19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLGFVSDSTG-----LYDRL 93 (218)
T ss_pred eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhEEEecCCcc-----cCcCC
Confidence 589999999999999999999999999999999999999999999999765 35899999843 33334
Q ss_pred ChhHHHhhc----ccCc--hHHHHHHHhhhhHH---HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCC
Q psy10767 76 SPSYLLEYY----NCST--LEDVFLYLCEQDQI---LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVL 146 (149)
Q Consensus 76 ~~~~~~~~~----~~~~--~~~~~~~~~~~~~~---~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~ 146 (149)
++.++..+. .... ....+.++++.+++ ..+... .+|+|||||++||||++.+|+++||||||++||+..
T Consensus 94 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~ 171 (218)
T cd03266 94 TARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVG--GFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMA 171 (218)
T ss_pred CHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhh--hcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHH
Confidence 555554332 1111 12233334444333 233333 459999999999999999999999999999999976
Q ss_pred C
Q psy10767 147 S 147 (149)
Q Consensus 147 ~ 147 (149)
+
T Consensus 172 ~ 172 (218)
T cd03266 172 T 172 (218)
T ss_pred H
Confidence 5
No 49
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=8e-38 Score=238.06 Aligned_cols=139 Identities=24% Similarity=0.256 Sum_probs=103.8
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec-------------ceeeeeecCcccccCc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV-------------RDIGYMPQVGLMRSGA 70 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~-------------~~i~~~~q~~~~~~~~ 70 (149)
.+++++||++.+||+++|+||||||||||+++|+|+++|++|+|.++|.++ +.++|++|++.+
T Consensus 24 ~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l---- 99 (228)
T PRK10584 24 SILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFML---- 99 (228)
T ss_pred EEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHHHhheEEEEEccccc----
Confidence 489999999999999999999999999999999999999999999999764 258999998432
Q ss_pred ccccCChhHHHhhc----ccCc--hHHHHHHHhhhhHHHH-hhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCC
Q psy10767 71 LLAEDSPSYLLEYY----NCST--LEDVFLYLCEQDQILF-SLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLD 143 (149)
Q Consensus 71 ~~~~~~~~~~~~~~----~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD 143 (149)
+...++.++..+. .... ..+.+..+++.+++.. .......+|+|||||++|||||+.+|+++||||||+|||
T Consensus 100 -~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD 178 (228)
T PRK10584 100 -IPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLD 178 (228)
T ss_pred -CCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCC
Confidence 2333444444321 1111 1223333444433311 112233469999999999999999999999999999999
Q ss_pred cCCC
Q psy10767 144 PVLS 147 (149)
Q Consensus 144 ~~~~ 147 (149)
+..+
T Consensus 179 ~~~~ 182 (228)
T PRK10584 179 RQTG 182 (228)
T ss_pred HHHH
Confidence 8764
No 50
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=7.2e-38 Score=237.57 Aligned_cols=139 Identities=27% Similarity=0.263 Sum_probs=103.5
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec------------ceeeeeecCcccccCcc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV------------RDIGYMPQVGLMRSGAL 71 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~------------~~i~~~~q~~~~~~~~~ 71 (149)
.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++ +.++|++|++. +
T Consensus 16 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~-----~ 90 (222)
T PRK10908 16 QALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHH-----L 90 (222)
T ss_pred eEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhheEEEecCcc-----c
Confidence 479999999999999999999999999999999999999999999999764 24899999843 2
Q ss_pred cccCChhHHHhhc----ccCch--HHHHHHHhhhhHHHH-hhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCc
Q psy10767 72 LAEDSPSYLLEYY----NCSTL--EDVFLYLCEQDQILF-SLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDP 144 (149)
Q Consensus 72 ~~~~~~~~~~~~~----~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~ 144 (149)
+...++.++..+. ..... .+.+..+++..++.. .......+|+|||||++|||||+.+|++|||||||++||+
T Consensus 91 ~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~ 170 (222)
T PRK10908 91 LMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDD 170 (222)
T ss_pred cccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCH
Confidence 2334455544331 11111 122233333333211 1122235699999999999999999999999999999999
Q ss_pred CCC
Q psy10767 145 VLS 147 (149)
Q Consensus 145 ~~~ 147 (149)
..+
T Consensus 171 ~~~ 173 (222)
T PRK10908 171 ALS 173 (222)
T ss_pred HHH
Confidence 764
No 51
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7e-38 Score=239.83 Aligned_cols=139 Identities=28% Similarity=0.360 Sum_probs=103.1
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec------------ceeeeeecCcccccCcc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV------------RDIGYMPQVGLMRSGAL 71 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~------------~~i~~~~q~~~~~~~~~ 71 (149)
.+++|+||++.+||+++|+||||||||||+++|+|+++|++|+|+++|.++ +.++|++|++.+
T Consensus 15 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~----- 89 (241)
T cd03256 15 KALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNL----- 89 (241)
T ss_pred EEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhccEEEcccCcc-----
Confidence 579999999999999999999999999999999999999999999999764 248999998432
Q ss_pred cccCChhHHHhhcc------------cC--chHHHHHHHhhhhHHHH-hhcCCCCCChhHHHHHHHHHHHhcCCCEEEEc
Q psy10767 72 LAEDSPSYLLEYYN------------CS--TLEDVFLYLCEQDQILF-SLVGSESAFGGQQRRVSFAVSLIHDPKILILD 136 (149)
Q Consensus 72 ~~~~~~~~~~~~~~------------~~--~~~~~~~~~~~~~~~~~-~~~~~~~~sgGqkqrv~iaral~~~p~illlD 136 (149)
+...++.++..+.. .. ...+.+..+++.+++.. .......+|+|||||++||||++.+|+++|||
T Consensus 90 ~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllD 169 (241)
T cd03256 90 IERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILAD 169 (241)
T ss_pred cccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 33344444443210 00 11222233333333311 11222356999999999999999999999999
Q ss_pred CCCCCCCcCCC
Q psy10767 137 EPTVGLDPVLS 147 (149)
Q Consensus 137 EPt~gLD~~~~ 147 (149)
|||+|||+..+
T Consensus 170 EPt~~LD~~~~ 180 (241)
T cd03256 170 EPVASLDPASS 180 (241)
T ss_pred CccccCCHHHH
Confidence 99999999765
No 52
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=4.9e-38 Score=253.79 Aligned_cols=137 Identities=30% Similarity=0.355 Sum_probs=107.6
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec-------ceeeeeecCcccccCcccccCC
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV-------RDIGYMPQVGLMRSGALLAEDS 76 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~-------~~i~~~~q~~~~~~~~~~~~~~ 76 (149)
.+++++||++.+||+++|+||||||||||+|+|+|+++|++|+|+++|+++ +.++|+||+. .+++..+
T Consensus 16 ~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~Q~~-----~l~p~~t 90 (353)
T PRK10851 16 QVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVFQHY-----ALFRHMT 90 (353)
T ss_pred EEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEEecCc-----ccCCCCc
Confidence 478999999999999999999999999999999999999999999999876 4699999984 4445556
Q ss_pred hhHHHhhcc-------cCc---hHHHHHHHhhhhHH---HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCC
Q psy10767 77 PSYLLEYYN-------CST---LEDVFLYLCEQDQI---LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLD 143 (149)
Q Consensus 77 ~~~~~~~~~-------~~~---~~~~~~~~~~~~~~---~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD 143 (149)
+.++..+.. ... ..+.+..+++.+++ .++... .+||||||||+|||||+.+|++|||||||++||
T Consensus 91 v~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~--~LSgGq~QRvalArAL~~~P~llLLDEP~s~LD 168 (353)
T PRK10851 91 VFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPA--QLSGGQKQRVALARALAVEPQILLLDEPFGALD 168 (353)
T ss_pred HHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChh--hCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCC
Confidence 666655421 011 12233344444433 233333 459999999999999999999999999999999
Q ss_pred cCCC
Q psy10767 144 PVLS 147 (149)
Q Consensus 144 ~~~~ 147 (149)
+..+
T Consensus 169 ~~~r 172 (353)
T PRK10851 169 AQVR 172 (353)
T ss_pred HHHH
Confidence 9765
No 53
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=5.8e-38 Score=236.33 Aligned_cols=137 Identities=29% Similarity=0.374 Sum_probs=103.8
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec-----------ceeeeeecCcccccCccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV-----------RDIGYMPQVGLMRSGALL 72 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~-----------~~i~~~~q~~~~~~~~~~ 72 (149)
.+++++||++.+|++++|+||||||||||+++|+|+++|++|+|.++|+++ +.++|++|++. ++
T Consensus 14 ~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~-----~~ 88 (213)
T cd03262 14 HVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFN-----LF 88 (213)
T ss_pred EeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcceEEecccc-----cC
Confidence 578999999999999999999999999999999999999999999999765 24899999843 33
Q ss_pred ccCChhHHHhhc-----ccCc--hHHHHHHHhhhhHH---HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCC
Q psy10767 73 AEDSPSYLLEYY-----NCST--LEDVFLYLCEQDQI---LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGL 142 (149)
Q Consensus 73 ~~~~~~~~~~~~-----~~~~--~~~~~~~~~~~~~~---~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gL 142 (149)
...++.++..+. .... ..+.+..+++.+++ ..+.. ..+|+|||||++||||++.+|+++||||||+||
T Consensus 89 ~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~LS~G~~qrv~la~al~~~p~llllDEP~~~L 166 (213)
T cd03262 89 PHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYP--AQLSGGQQQRVAIARALAMNPKVMLFDEPTSAL 166 (213)
T ss_pred CCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCc--cccCHHHHHHHHHHHHHhcCCCEEEEeCCccCC
Confidence 334455444321 1111 11223333333333 23333 345999999999999999999999999999999
Q ss_pred CcCCC
Q psy10767 143 DPVLS 147 (149)
Q Consensus 143 D~~~~ 147 (149)
|+..+
T Consensus 167 D~~~~ 171 (213)
T cd03262 167 DPELV 171 (213)
T ss_pred CHHHH
Confidence 99764
No 54
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.3e-38 Score=255.45 Aligned_cols=137 Identities=28% Similarity=0.415 Sum_probs=106.5
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec-------ceeeeeecCcccccCcccccCC
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV-------RDIGYMPQVGLMRSGALLAEDS 76 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~-------~~i~~~~q~~~~~~~~~~~~~~ 76 (149)
.+++|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|.++ +.++|+||+. .+++..+
T Consensus 17 ~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v~Q~~-----~l~~~~t 91 (369)
T PRK11000 17 VISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVFQSY-----ALYPHLS 91 (369)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEEeCCc-----ccCCCCC
Confidence 478999999999999999999999999999999999999999999999875 3599999984 3444556
Q ss_pred hhHHHhhc----ccCc--hHHHHHHHhhhhHH---HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCCC
Q psy10767 77 PSYLLEYY----NCST--LEDVFLYLCEQDQI---LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 77 ~~~~~~~~----~~~~--~~~~~~~~~~~~~~---~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~~ 147 (149)
+.++..+. .... ..+.+..+++.+++ ..+.. ..|||||||||+|||||+.+|++|||||||++||+..+
T Consensus 92 v~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~--~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~ 169 (369)
T PRK11000 92 VAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKP--KALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALR 169 (369)
T ss_pred HHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCCh--hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence 66665442 1111 12233344444443 22223 34599999999999999999999999999999999765
No 55
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.5e-38 Score=240.33 Aligned_cols=137 Identities=29% Similarity=0.361 Sum_probs=103.3
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec-------ceeeeeecCcccccCcccccCC
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV-------RDIGYMPQVGLMRSGALLAEDS 76 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~-------~~i~~~~q~~~~~~~~~~~~~~ 76 (149)
.+++|+||++++|++++|+||||||||||+++|+|+++|++|+|+++|.++ +.++|++|++.+ +...+
T Consensus 16 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~-----~~~~t 90 (239)
T cd03296 16 VALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVFQHYAL-----FRHMT 90 (239)
T ss_pred EeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEEecCCcc-----cCCCC
Confidence 479999999999999999999999999999999999999999999999764 358999998533 33344
Q ss_pred hhHHHhhc----cc----Cc--hHHHHHHHhhhhHH---HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCC
Q psy10767 77 PSYLLEYY----NC----ST--LEDVFLYLCEQDQI---LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLD 143 (149)
Q Consensus 77 ~~~~~~~~----~~----~~--~~~~~~~~~~~~~~---~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD 143 (149)
+.++..+. .. .. ..+.+..+++.+++ ..+.. ..+|+|||||++|||||+.+|+++||||||++||
T Consensus 91 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD 168 (239)
T cd03296 91 VFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYP--AQLSGGQRQRVALARALAVEPKVLLLDEPFGALD 168 (239)
T ss_pred HHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcCh--hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence 44444321 11 11 11222333333333 22222 3459999999999999999999999999999999
Q ss_pred cCCC
Q psy10767 144 PVLS 147 (149)
Q Consensus 144 ~~~~ 147 (149)
+..+
T Consensus 169 ~~~~ 172 (239)
T cd03296 169 AKVR 172 (239)
T ss_pred HHHH
Confidence 9764
No 56
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=7.2e-38 Score=234.73 Aligned_cols=137 Identities=28% Similarity=0.398 Sum_probs=103.7
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec-------------ceeeeeecCcccccCc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV-------------RDIGYMPQVGLMRSGA 70 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~-------------~~i~~~~q~~~~~~~~ 70 (149)
.+++|+||++.+||+++|+||||||||||+++|+|+++|++|+|.++|.++ +.++|++|++.
T Consensus 12 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~----- 86 (206)
T TIGR03608 12 IILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFA----- 86 (206)
T ss_pred EEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCeeEEecchh-----
Confidence 479999999999999999999999999999999999999999999999762 25899999843
Q ss_pred ccccCChhHHHhhc----ccCc--hHHHHHHHhhhhHH---HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCC
Q psy10767 71 LLAEDSPSYLLEYY----NCST--LEDVFLYLCEQDQI---LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVG 141 (149)
Q Consensus 71 ~~~~~~~~~~~~~~----~~~~--~~~~~~~~~~~~~~---~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~g 141 (149)
++...++.++..+. .... ..+.+..+++..++ ..+.. ..+|+|||||++|||||+.+|+++||||||++
T Consensus 87 ~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~lS~G~~qr~~laral~~~p~llllDEPt~~ 164 (206)
T TIGR03608 87 LIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKI--YELSGGEQQRVALARAILKDPPLILADEPTGS 164 (206)
T ss_pred hccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCCh--hhCCHHHHHHHHHHHHHHcCCCEEEEeCCcCC
Confidence 33334454444331 1111 12223334444333 22223 34599999999999999999999999999999
Q ss_pred CCcCCC
Q psy10767 142 LDPVLS 147 (149)
Q Consensus 142 LD~~~~ 147 (149)
||+..+
T Consensus 165 LD~~~~ 170 (206)
T TIGR03608 165 LDPKNR 170 (206)
T ss_pred CCHHHH
Confidence 998764
No 57
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=6e-38 Score=254.92 Aligned_cols=138 Identities=30% Similarity=0.339 Sum_probs=108.7
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec-------ceeeeeecCcccccCcccccCC
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV-------RDIGYMPQVGLMRSGALLAEDS 76 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~-------~~i~~~~q~~~~~~~~~~~~~~ 76 (149)
.+++++||++++||+++|+||||||||||||+|+|+++|++|+|.++|+++ +.++|+||+ ..+++..+
T Consensus 28 ~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~-----~~lfp~lt 102 (375)
T PRK09452 28 EVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVNTVFQS-----YALFPHMT 102 (375)
T ss_pred EEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEecC-----cccCCCCC
Confidence 368999999999999999999999999999999999999999999999876 459999998 34555666
Q ss_pred hhHHHhhc----ccCch--HHHHHHHhhhhHH---HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCCC
Q psy10767 77 PSYLLEYY----NCSTL--EDVFLYLCEQDQI---LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 77 ~~~~~~~~----~~~~~--~~~~~~~~~~~~~---~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~~ 147 (149)
+.++..+. ..... .+.+.++++.+++ .++... .|||||||||+|||||+.+|++|||||||++||+..|
T Consensus 103 v~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~--~LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r 180 (375)
T PRK09452 103 VFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPH--QLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLR 180 (375)
T ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChh--hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHH
Confidence 77776542 11111 2233344444333 333333 4599999999999999999999999999999999765
Q ss_pred C
Q psy10767 148 F 148 (149)
Q Consensus 148 ~ 148 (149)
.
T Consensus 181 ~ 181 (375)
T PRK09452 181 K 181 (375)
T ss_pred H
Confidence 3
No 58
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.7e-38 Score=242.00 Aligned_cols=139 Identities=28% Similarity=0.336 Sum_probs=104.5
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec----ceeeeeecCcccccCcccccCChhH
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV----RDIGYMPQVGLMRSGALLAEDSPSY 79 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~----~~i~~~~q~~~~~~~~~~~~~~~~~ 79 (149)
++++|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++ ..++|++|++. ++...++.+
T Consensus 15 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~-----~~~~~tv~e 89 (255)
T PRK11248 15 PALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQNEG-----LLPWRNVQD 89 (255)
T ss_pred eeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEEEeCCCc-----cCCCCcHHH
Confidence 479999999999999999999999999999999999999999999999875 35899999843 333345555
Q ss_pred HHhhc----ccCc--hHHHHHHHhhhhHHHH-hhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCCC
Q psy10767 80 LLEYY----NCST--LEDVFLYLCEQDQILF-SLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 80 ~~~~~----~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~~ 147 (149)
+..+. .... ....+..+++.+++.. .......+|||||||++|||||+.+|++|||||||++||+..+
T Consensus 90 ~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~ 164 (255)
T PRK11248 90 NVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTR 164 (255)
T ss_pred HHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHH
Confidence 54321 1111 1122333344433311 1122334699999999999999999999999999999999765
No 59
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=6.2e-38 Score=253.89 Aligned_cols=138 Identities=25% Similarity=0.355 Sum_probs=109.0
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCc--ceEEECCeec-------ceeeeeecCcccccCccccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDH--GSISLSARTV-------RDIGYMPQVGLMRSGALLAE 74 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~--G~i~~~g~~~-------~~i~~~~q~~~~~~~~~~~~ 74 (149)
.+++++||++.+||+++|+||||||||||||+|+|+++|++ |+|.++|+++ +.++|+||+. .+++.
T Consensus 19 ~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~-----~l~p~ 93 (362)
T TIGR03258 19 TVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLALLFQNY-----ALFPH 93 (362)
T ss_pred EEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEEEEECCc-----ccCCC
Confidence 47999999999999999999999999999999999999999 9999999875 4599999984 44556
Q ss_pred CChhHHHhhc----ccCc--hHHHHHHHhhhhHH---HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcC
Q psy10767 75 DSPSYLLEYY----NCST--LEDVFLYLCEQDQI---LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPV 145 (149)
Q Consensus 75 ~~~~~~~~~~----~~~~--~~~~~~~~~~~~~~---~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~ 145 (149)
.++.++..+. .... ....+.++++.+++ .++... .|||||||||+|||||+.+|++|||||||++||+.
T Consensus 94 ~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~--~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~ 171 (362)
T TIGR03258 94 LKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPA--QLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDAN 171 (362)
T ss_pred CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChh--hCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHH
Confidence 6677666542 1111 12334444444443 333344 45999999999999999999999999999999997
Q ss_pred CCC
Q psy10767 146 LSF 148 (149)
Q Consensus 146 ~~~ 148 (149)
.|.
T Consensus 172 ~r~ 174 (362)
T TIGR03258 172 IRA 174 (362)
T ss_pred HHH
Confidence 653
No 60
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=6.7e-38 Score=248.25 Aligned_cols=137 Identities=36% Similarity=0.507 Sum_probs=104.5
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec--------ceeeeeecCcccccCcccccC
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV--------RDIGYMPQVGLMRSGALLAED 75 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~--------~~i~~~~q~~~~~~~~~~~~~ 75 (149)
.+++++||++++|+++||+||||||||||+++|+|+++|++|+|.++|.++ +.++|+||++. ++...
T Consensus 18 ~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~-----~~~~~ 92 (303)
T TIGR01288 18 VVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGVVPQFDN-----LDPEF 92 (303)
T ss_pred EEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEEEEecccc-----CCcCC
Confidence 479999999999999999999999999999999999999999999999764 35999999843 33344
Q ss_pred ChhHHHhhc----ccCch--HHHHHHHhhhhHH---HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCC
Q psy10767 76 SPSYLLEYY----NCSTL--EDVFLYLCEQDQI---LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVL 146 (149)
Q Consensus 76 ~~~~~~~~~----~~~~~--~~~~~~~~~~~~~---~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~ 146 (149)
++.++..++ ..... ...+..+++.+++ ..+... .+|||||||++|||||+.+|+++||||||+|||+..
T Consensus 93 tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~--~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~ 170 (303)
T TIGR01288 93 TVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVA--LLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHA 170 (303)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchh--hCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHH
Confidence 555554422 11111 1222333333332 222333 459999999999999999999999999999999976
Q ss_pred C
Q psy10767 147 S 147 (149)
Q Consensus 147 ~ 147 (149)
+
T Consensus 171 ~ 171 (303)
T TIGR01288 171 R 171 (303)
T ss_pred H
Confidence 5
No 61
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.7e-38 Score=243.59 Aligned_cols=136 Identities=24% Similarity=0.347 Sum_probs=103.5
Q ss_pred ceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec-------------ceeeeeecCcccccCcc
Q psy10767 5 SASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV-------------RDIGYMPQVGLMRSGAL 71 (149)
Q Consensus 5 ~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~-------------~~i~~~~q~~~~~~~~~ 71 (149)
+++|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++ +.++|++|++. +
T Consensus 39 il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~-----~ 113 (269)
T cd03294 39 GVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFA-----L 113 (269)
T ss_pred EeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcEEEEecCcc-----c
Confidence 68999999999999999999999999999999999999999999999754 25899999843 3
Q ss_pred cccCChhHHHhhc----ccCc--hHHHHHHHhhhhHH---HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCC
Q psy10767 72 LAEDSPSYLLEYY----NCST--LEDVFLYLCEQDQI---LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGL 142 (149)
Q Consensus 72 ~~~~~~~~~~~~~----~~~~--~~~~~~~~~~~~~~---~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gL 142 (149)
+...++.++..+. .... ..+.+..+++.+++ ..... ..+|+|||||++|||||+.+|++|||||||+||
T Consensus 114 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~LS~Gq~qrv~lAral~~~p~illLDEPt~~L 191 (269)
T cd03294 114 LPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYP--DELSGGMQQRVGLARALAVDPDILLMDEAFSAL 191 (269)
T ss_pred CCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCc--ccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccC
Confidence 3334555554331 1111 12223333444333 23333 345999999999999999999999999999999
Q ss_pred CcCCC
Q psy10767 143 DPVLS 147 (149)
Q Consensus 143 D~~~~ 147 (149)
|+..+
T Consensus 192 D~~~~ 196 (269)
T cd03294 192 DPLIR 196 (269)
T ss_pred CHHHH
Confidence 99764
No 62
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=6.8e-38 Score=239.39 Aligned_cols=137 Identities=31% Similarity=0.357 Sum_probs=103.2
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec----------ceeeeeecCcccccCcccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV----------RDIGYMPQVGLMRSGALLA 73 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~----------~~i~~~~q~~~~~~~~~~~ 73 (149)
++++++||++.+||+++|+||||||||||+++|+|+++|++|+|.++|.++ ..++|+||++. ++.
T Consensus 14 ~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~-----l~~ 88 (236)
T cd03219 14 VALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRTFQIPR-----LFP 88 (236)
T ss_pred EEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEEEecccc-----ccc
Confidence 478999999999999999999999999999999999999999999999764 23899999843 333
Q ss_pred cCChhHHHhhcc----cC------------chHHHHHHHhhhhHH---HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEE
Q psy10767 74 EDSPSYLLEYYN----CS------------TLEDVFLYLCEQDQI---LFSLVGSESAFGGQQRRVSFAVSLIHDPKILI 134 (149)
Q Consensus 74 ~~~~~~~~~~~~----~~------------~~~~~~~~~~~~~~~---~~~~~~~~~~sgGqkqrv~iaral~~~p~ill 134 (149)
..++.++..+.. .. ...+.+..+++.+++ ..... ..+|||||||++|||||+.+|+++|
T Consensus 89 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~LSgG~~qrv~la~al~~~p~lll 166 (236)
T cd03219 89 ELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPA--GELSYGQQRRLEIARALATDPKLLL 166 (236)
T ss_pred CCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCCh--hhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 445555443211 00 011223333333333 12222 3469999999999999999999999
Q ss_pred EcCCCCCCCcCCC
Q psy10767 135 LDEPTVGLDPVLS 147 (149)
Q Consensus 135 lDEPt~gLD~~~~ 147 (149)
|||||++||+..+
T Consensus 167 lDEPt~~LD~~~~ 179 (236)
T cd03219 167 LDEPAAGLNPEET 179 (236)
T ss_pred EcCCcccCCHHHH
Confidence 9999999998765
No 63
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.5e-38 Score=242.60 Aligned_cols=141 Identities=26% Similarity=0.282 Sum_probs=107.6
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec----------ceeeeeecCcccccCcccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV----------RDIGYMPQVGLMRSGALLA 73 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~----------~~i~~~~q~~~~~~~~~~~ 73 (149)
.+++++||++++|+.++|+|+||||||||+++++|+++|++|+|.++|.+. +++|||||++..+ +.
T Consensus 18 ~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q----~~ 93 (235)
T COG1122 18 AALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQ----LF 93 (235)
T ss_pred eeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcceEEEEECcccc----cc
Confidence 689999999999999999999999999999999999999999999999763 4599999997432 22
Q ss_pred cCChhHHHhhc----ccCc--hHHHHHHHhhhhHHH-HhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCC
Q psy10767 74 EDSPSYLLEYY----NCST--LEDVFLYLCEQDQIL-FSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVL 146 (149)
Q Consensus 74 ~~~~~~~~~~~----~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~ 146 (149)
..++.+-..+. +... .+.++.++++..++. ........|||||||||+||.+|+.+|++|||||||++||+..
T Consensus 94 ~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~ 173 (235)
T COG1122 94 GPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKG 173 (235)
T ss_pred cCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHH
Confidence 23343333332 2211 234445555555441 1222333459999999999999999999999999999999986
Q ss_pred CC
Q psy10767 147 SF 148 (149)
Q Consensus 147 ~~ 148 (149)
+.
T Consensus 174 ~~ 175 (235)
T COG1122 174 RR 175 (235)
T ss_pred HH
Confidence 53
No 64
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.2e-37 Score=233.97 Aligned_cols=139 Identities=24% Similarity=0.287 Sum_probs=104.8
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec--------ceeeeeecCcccccCcccccC
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV--------RDIGYMPQVGLMRSGALLAED 75 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~--------~~i~~~~q~~~~~~~~~~~~~ 75 (149)
.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++ +.++|++|.+ .+....
T Consensus 15 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~~~~~~-----~~~~~~ 89 (204)
T PRK13538 15 ILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYLGHQP-----GIKTEL 89 (204)
T ss_pred EEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheEEeCCcc-----ccCcCC
Confidence 478999999999999999999999999999999999999999999999764 2488999874 233344
Q ss_pred ChhHHHhhcc-c-C-chHHHHHHHhhhhHHHH-hhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCCC
Q psy10767 76 SPSYLLEYYN-C-S-TLEDVFLYLCEQDQILF-SLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 76 ~~~~~~~~~~-~-~-~~~~~~~~~~~~~~~~~-~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~~ 147 (149)
++.++..+.. . . .....+..+++.+++.. .......+|+|||||++||||++++|+++||||||++||+..+
T Consensus 90 tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~ 165 (204)
T PRK13538 90 TALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGV 165 (204)
T ss_pred cHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHH
Confidence 5555554321 1 1 12233334444433311 1122334699999999999999999999999999999998764
No 65
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=1.5e-37 Score=235.35 Aligned_cols=137 Identities=28% Similarity=0.382 Sum_probs=103.0
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec----------ceeeeeecCcccccCcccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV----------RDIGYMPQVGLMRSGALLA 73 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~----------~~i~~~~q~~~~~~~~~~~ 73 (149)
++++++||++.+||++||+||||||||||+++|+|+++|++|+|.++|.++ +.++|+||++. ++.
T Consensus 14 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~-----~~~ 88 (222)
T cd03224 14 QILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYVPEGRR-----IFP 88 (222)
T ss_pred eEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEEeccccc-----cCC
Confidence 579999999999999999999999999999999999999999999999754 24899999843 333
Q ss_pred cCChhHHHhhccc----CchHHHHHHHhhhhH-H---HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcC
Q psy10767 74 EDSPSYLLEYYNC----STLEDVFLYLCEQDQ-I---LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPV 145 (149)
Q Consensus 74 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~-~---~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~ 145 (149)
..++.++..+... .........+.+... + ..... ..+|+|||||++|||||+.+|+++||||||+|||+.
T Consensus 89 ~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~--~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~ 166 (222)
T cd03224 89 ELTVEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLA--GTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPK 166 (222)
T ss_pred CCcHHHHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhhCch--hhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHH
Confidence 4455555433211 111122222333321 1 22222 345999999999999999999999999999999997
Q ss_pred CC
Q psy10767 146 LS 147 (149)
Q Consensus 146 ~~ 147 (149)
.+
T Consensus 167 ~~ 168 (222)
T cd03224 167 IV 168 (222)
T ss_pred HH
Confidence 65
No 66
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.2e-37 Score=233.47 Aligned_cols=137 Identities=26% Similarity=0.336 Sum_probs=109.1
Q ss_pred ccceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec----------ceeeeeecCcccccCccc
Q psy10767 3 DVSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV----------RDIGYMPQVGLMRSGALL 72 (149)
Q Consensus 3 ~~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~----------~~i~~~~q~~~~~~~~~~ 72 (149)
..+|+++||++++||+++|+|+||||||||||+|+|+.++.+|+|.++|+++ ..|+||||. ..++
T Consensus 16 ~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~~VPeg-----R~iF 90 (237)
T COG0410 16 IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIAYVPEG-----RRIF 90 (237)
T ss_pred eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeEeCccc-----ccch
Confidence 3589999999999999999999999999999999999999999999999988 249999997 4567
Q ss_pred ccCChhHHHhhc--ccCc--hHHH-HHHHhhhhH----HHHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCC
Q psy10767 73 AEDSPSYLLEYY--NCST--LEDV-FLYLCEQDQ----ILFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLD 143 (149)
Q Consensus 73 ~~~~~~~~~~~~--~~~~--~~~~-~~~~~~~~~----~~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD 143 (149)
+..++.+|+..- .... .... .+++.+.+- ..+++.+.+ ||||||.++|||||+.+|++|+|||||.||-
T Consensus 91 ~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~L--SGGEQQMLAiaRALm~~PklLLLDEPs~GLa 168 (237)
T COG0410 91 PRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTL--SGGEQQMLAIARALMSRPKLLLLDEPSEGLA 168 (237)
T ss_pred hhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCC--ChHHHHHHHHHHHHhcCCCEEEecCCccCcC
Confidence 788888887642 1111 1111 223333322 234444444 9999999999999999999999999999998
Q ss_pred cCC
Q psy10767 144 PVL 146 (149)
Q Consensus 144 ~~~ 146 (149)
|..
T Consensus 169 P~i 171 (237)
T COG0410 169 PKI 171 (237)
T ss_pred HHH
Confidence 864
No 67
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=1e-37 Score=237.34 Aligned_cols=138 Identities=28% Similarity=0.392 Sum_probs=104.1
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCc-----cCCcceEEECCeec-----------ceeeeeecCcccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRL-----RLDHGSISLSARTV-----------RDIGYMPQVGLMR 67 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~-----~~~~G~i~~~g~~~-----------~~i~~~~q~~~~~ 67 (149)
++++|+||++.+||+++|+||||||||||+++|+|++ +|++|+|.++|.++ +.++|++|++.+
T Consensus 14 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~- 92 (227)
T cd03260 14 HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNP- 92 (227)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHHhhEEEEecCchh-
Confidence 5799999999999999999999999999999999999 99999999999764 248999998532
Q ss_pred cCcccccCChhHHHhhc----ccCc---hHHHHHHHhhhhHHH---HhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcC
Q psy10767 68 SGALLAEDSPSYLLEYY----NCST---LEDVFLYLCEQDQIL---FSLVGSESAFGGQQRRVSFAVSLIHDPKILILDE 137 (149)
Q Consensus 68 ~~~~~~~~~~~~~~~~~----~~~~---~~~~~~~~~~~~~~~---~~~~~~~~~sgGqkqrv~iaral~~~p~illlDE 137 (149)
+ ..++.++..+. .... ..+.+..+++.+++. ........+|||||||++|||||+.+|+++||||
T Consensus 93 ----~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDE 167 (227)
T cd03260 93 ----F-PGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDE 167 (227)
T ss_pred ----c-cccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 2 34454444321 1111 122333444443331 2221024569999999999999999999999999
Q ss_pred CCCCCCcCCC
Q psy10767 138 PTVGLDPVLS 147 (149)
Q Consensus 138 Pt~gLD~~~~ 147 (149)
||++||+..+
T Consensus 168 Pt~~LD~~~~ 177 (227)
T cd03260 168 PTSALDPIST 177 (227)
T ss_pred CCccCCHHHH
Confidence 9999999765
No 68
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.3e-37 Score=237.63 Aligned_cols=139 Identities=27% Similarity=0.367 Sum_probs=104.3
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec------------ceeeeeecCcccccCcc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV------------RDIGYMPQVGLMRSGAL 71 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~------------~~i~~~~q~~~~~~~~~ 71 (149)
++++++||++.+||+++|+||||||||||+++|+|+++|++|+|.++|.++ +.++|++|++.+
T Consensus 19 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~----- 93 (233)
T cd03258 19 TALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNL----- 93 (233)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEccCccc-----
Confidence 689999999999999999999999999999999999999999999999764 248999998533
Q ss_pred cccCChhHHHhhc----ccCc--hHHHHHHHhhhhHHHH-hhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCc
Q psy10767 72 LAEDSPSYLLEYY----NCST--LEDVFLYLCEQDQILF-SLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDP 144 (149)
Q Consensus 72 ~~~~~~~~~~~~~----~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~ 144 (149)
+...++.++..+. .... ....+..+++..++.. .......+|+|||||++|||||+.+|+++||||||+|||+
T Consensus 94 ~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~ 173 (233)
T cd03258 94 LSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDP 173 (233)
T ss_pred CCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCH
Confidence 3334444444321 1111 1222333334333311 1122334699999999999999999999999999999999
Q ss_pred CCC
Q psy10767 145 VLS 147 (149)
Q Consensus 145 ~~~ 147 (149)
..+
T Consensus 174 ~~~ 176 (233)
T cd03258 174 ETT 176 (233)
T ss_pred HHH
Confidence 765
No 69
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=9.9e-38 Score=247.14 Aligned_cols=137 Identities=33% Similarity=0.495 Sum_probs=106.5
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec--------ceeeeeecCcccccCcccccC
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV--------RDIGYMPQVGLMRSGALLAED 75 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~--------~~i~~~~q~~~~~~~~~~~~~ 75 (149)
.+++|+||++++||++||+||||||||||+|+|+|+++|++|+|.++|.++ +.++|+||++. ++...
T Consensus 16 ~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~-----l~~~~ 90 (301)
T TIGR03522 16 NALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLPEHNP-----LYLDM 90 (301)
T ss_pred EEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEEecCCCC-----CCCCC
Confidence 479999999999999999999999999999999999999999999999775 35999999843 34445
Q ss_pred ChhHHHhhc----ccCc--hHHHHHHHhhhhHH---HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCC
Q psy10767 76 SPSYLLEYY----NCST--LEDVFLYLCEQDQI---LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVL 146 (149)
Q Consensus 76 ~~~~~~~~~----~~~~--~~~~~~~~~~~~~~---~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~ 146 (149)
++.++..+. .... ..+....+++.+++ .++... .+|+|||||++|||||+++|+++||||||+|||+..
T Consensus 91 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~--~LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~ 168 (301)
T TIGR03522 91 YVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIG--QLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQ 168 (301)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchh--hCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence 566655432 1111 12233444444433 233333 459999999999999999999999999999999986
Q ss_pred C
Q psy10767 147 S 147 (149)
Q Consensus 147 ~ 147 (149)
+
T Consensus 169 ~ 169 (301)
T TIGR03522 169 L 169 (301)
T ss_pred H
Confidence 5
No 70
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.7e-38 Score=251.25 Aligned_cols=137 Identities=27% Similarity=0.361 Sum_probs=105.4
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec------------ceeeeeecCcccccCcc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV------------RDIGYMPQVGLMRSGAL 71 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~------------~~i~~~~q~~~~~~~~~ 71 (149)
.+++|+||++++||++||+||||||||||+|+|+|+++|++|+|.++|.++ +.++|+||++. +
T Consensus 19 ~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~-----l 93 (343)
T PRK11153 19 HALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKARRQIGMIFQHFN-----L 93 (343)
T ss_pred EEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCc-----c
Confidence 579999999999999999999999999999999999999999999999764 35999999843 3
Q ss_pred cccCChhHHHhhc----ccCc--hHHHHHHHhhhhHH---HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCC
Q psy10767 72 LAEDSPSYLLEYY----NCST--LEDVFLYLCEQDQI---LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGL 142 (149)
Q Consensus 72 ~~~~~~~~~~~~~----~~~~--~~~~~~~~~~~~~~---~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gL 142 (149)
+...++.++..+. .... ..+....+++.+++ ..+.. ..+|||||||++|||||+++|++|||||||+||
T Consensus 94 ~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~--~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~L 171 (343)
T PRK11153 94 LSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYP--AQLSGGQKQRVAIARALASNPKVLLCDEATSAL 171 (343)
T ss_pred CCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCCh--hhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccC
Confidence 3444555555432 1111 12223334444333 22223 345999999999999999999999999999999
Q ss_pred CcCCC
Q psy10767 143 DPVLS 147 (149)
Q Consensus 143 D~~~~ 147 (149)
|+..+
T Consensus 172 D~~~~ 176 (343)
T PRK11153 172 DPATT 176 (343)
T ss_pred CHHHH
Confidence 99765
No 71
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=1.2e-37 Score=238.41 Aligned_cols=137 Identities=31% Similarity=0.405 Sum_probs=103.3
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec--------ceeeeeecCcccccCcccccC
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV--------RDIGYMPQVGLMRSGALLAED 75 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~--------~~i~~~~q~~~~~~~~~~~~~ 75 (149)
.+++++||++.+||+++|+||||||||||+++|+|+++|++|+|.++|.++ +.++|++|++. ++...
T Consensus 15 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~-----~~~~~ 89 (236)
T TIGR03864 15 RALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGVVFQQPT-----LDLDL 89 (236)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEEeCCCCC-----CcccC
Confidence 478999999999999999999999999999999999999999999999765 35899999843 22334
Q ss_pred ChhHHHhhc----ccCc--hHHHHHHHhhhhHH---HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCC
Q psy10767 76 SPSYLLEYY----NCST--LEDVFLYLCEQDQI---LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVL 146 (149)
Q Consensus 76 ~~~~~~~~~----~~~~--~~~~~~~~~~~~~~---~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~ 146 (149)
++.++..+. .... ....+..+++.+++ ..+.. ..+|+|||||++|||||+.+|+++||||||+|||+..
T Consensus 90 t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~--~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~ 167 (236)
T TIGR03864 90 SVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKV--RELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPAS 167 (236)
T ss_pred cHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCCh--hhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHH
Confidence 444444322 1111 11222333333332 22222 3459999999999999999999999999999999976
Q ss_pred C
Q psy10767 147 S 147 (149)
Q Consensus 147 ~ 147 (149)
+
T Consensus 168 ~ 168 (236)
T TIGR03864 168 R 168 (236)
T ss_pred H
Confidence 5
No 72
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=1.5e-37 Score=236.98 Aligned_cols=139 Identities=32% Similarity=0.452 Sum_probs=103.1
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec----------ceeeeeecCcccccCcccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV----------RDIGYMPQVGLMRSGALLA 73 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~----------~~i~~~~q~~~~~~~~~~~ 73 (149)
.+++++||++.+||+++|+||||||||||+++|+|+++|++|+|.++|.++ +.++|++|++. ++.
T Consensus 14 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~-----~~~ 88 (232)
T cd03218 14 KVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYLPQEAS-----IFR 88 (232)
T ss_pred EeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEEecCCcc-----ccc
Confidence 478999999999999999999999999999999999999999999999754 24899999843 333
Q ss_pred cCChhHHHhhc----ccCc--hHHHHHHHhhhhHHHH-hhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCC
Q psy10767 74 EDSPSYLLEYY----NCST--LEDVFLYLCEQDQILF-SLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVL 146 (149)
Q Consensus 74 ~~~~~~~~~~~----~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~ 146 (149)
..++.++..+. .... ....+..+++..++.. .......+|+|||||++||||++.+|++|||||||+|||+..
T Consensus 89 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~ 168 (232)
T cd03218 89 KLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIA 168 (232)
T ss_pred cCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHH
Confidence 34455544331 1111 1122233333333211 112223469999999999999999999999999999999976
Q ss_pred C
Q psy10767 147 S 147 (149)
Q Consensus 147 ~ 147 (149)
+
T Consensus 169 ~ 169 (232)
T cd03218 169 V 169 (232)
T ss_pred H
Confidence 4
No 73
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.6e-38 Score=253.94 Aligned_cols=137 Identities=28% Similarity=0.369 Sum_probs=108.1
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec-------ceeeeeecCcccccCcccccCC
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV-------RDIGYMPQVGLMRSGALLAEDS 76 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~-------~~i~~~~q~~~~~~~~~~~~~~ 76 (149)
.+++++||++++||+++|+||||||||||||+|+|+.+|++|+|+++|+++ +.++|+||+ ..+++..+
T Consensus 33 ~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~vfQ~-----~~lfp~lt 107 (377)
T PRK11607 33 HAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINMMFQS-----YALFPHMT 107 (377)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEeCC-----CccCCCCC
Confidence 478999999999999999999999999999999999999999999999876 469999998 44556667
Q ss_pred hhHHHhhcc----cCc--hHHHHHHHhhhhHH---HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCCC
Q psy10767 77 PSYLLEYYN----CST--LEDVFLYLCEQDQI---LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 77 ~~~~~~~~~----~~~--~~~~~~~~~~~~~~---~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~~ 147 (149)
+.+|..+.. ... ..+.+.++++..++ ..+.. ..|||||||||+|||||+.+|++|||||||++||+..+
T Consensus 108 v~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~--~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r 185 (377)
T PRK11607 108 VEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKP--HQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLR 185 (377)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCh--hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence 777765421 111 12223334443333 22233 34599999999999999999999999999999999765
No 74
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=2.6e-37 Score=234.00 Aligned_cols=138 Identities=25% Similarity=0.364 Sum_probs=102.9
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec---------ceeeeeecCcccccCccccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV---------RDIGYMPQVGLMRSGALLAE 74 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~---------~~i~~~~q~~~~~~~~~~~~ 74 (149)
++++|+||++.+|++++|+||||||||||+++|+|+.+|++|+|+++|.++ +.++|++|++.+ +.
T Consensus 18 ~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~-----~~- 91 (220)
T cd03245 18 PALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGYVPQDVTL-----FY- 91 (220)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEEEeCCCCcc-----cc-
Confidence 479999999999999999999999999999999999999999999999764 258999998532 22
Q ss_pred CChhHHHhhcccCchHHHHHHHhhhhHH---HHhhc---------CCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCC
Q psy10767 75 DSPSYLLEYYNCSTLEDVFLYLCEQDQI---LFSLV---------GSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGL 142 (149)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~---------~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gL 142 (149)
.++.++..+.............++..++ ..... ....+|||||||++||||++.+|+++||||||+||
T Consensus 92 ~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~llllDEPt~~L 171 (220)
T cd03245 92 GTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAM 171 (220)
T ss_pred chHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccC
Confidence 2455554332111112222222222222 22211 12356999999999999999999999999999999
Q ss_pred CcCCC
Q psy10767 143 DPVLS 147 (149)
Q Consensus 143 D~~~~ 147 (149)
|+..+
T Consensus 172 D~~~~ 176 (220)
T cd03245 172 DMNSE 176 (220)
T ss_pred CHHHH
Confidence 99865
No 75
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=100.00 E-value=1.5e-37 Score=232.36 Aligned_cols=137 Identities=26% Similarity=0.293 Sum_probs=103.5
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec--------ceeeeeecCcccccCcccccC
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV--------RDIGYMPQVGLMRSGALLAED 75 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~--------~~i~~~~q~~~~~~~~~~~~~ 75 (149)
.+++++||++.+||+++|+||||||||||+++|+|+++|++|+|.++|.++ +.++|++|+..+ +...
T Consensus 14 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~-----~~~~ 88 (198)
T TIGR01189 14 MLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLGHLPGL-----KPEL 88 (198)
T ss_pred EEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhheEEeccCccc-----ccCC
Confidence 478999999999999999999999999999999999999999999999864 358899987432 3334
Q ss_pred ChhHHHhhcc-c-CchHHHHHHHhhhhHH---HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCCC
Q psy10767 76 SPSYLLEYYN-C-STLEDVFLYLCEQDQI---LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 76 ~~~~~~~~~~-~-~~~~~~~~~~~~~~~~---~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~~ 147 (149)
++.++..+.. . ...+..+..+++..++ ..... ..+|+|||||++||||++.+|+++||||||++||+..+
T Consensus 89 tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~ 163 (198)
T TIGR01189 89 SALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPA--AQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGV 163 (198)
T ss_pred cHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhcCCh--hhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHH
Confidence 5555543321 1 1112223333333333 22233 34599999999999999999999999999999998754
No 76
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.5e-37 Score=238.64 Aligned_cols=139 Identities=29% Similarity=0.349 Sum_probs=104.0
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec---------ceeeeeecCcccccCccccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV---------RDIGYMPQVGLMRSGALLAE 74 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~---------~~i~~~~q~~~~~~~~~~~~ 74 (149)
.+++++||++.+|++++|+||||||||||+++|+|+++|++|+|.++|.++ ..++|++|++. ++..
T Consensus 15 ~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~-----~~~~ 89 (242)
T cd03295 15 KAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYVIQQIG-----LFPH 89 (242)
T ss_pred eEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEEccCcc-----ccCC
Confidence 479999999999999999999999999999999999999999999999764 24899999843 3333
Q ss_pred CChhHHHhhc----ccCc--hHHHHHHHhhhhHHH---HhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcC
Q psy10767 75 DSPSYLLEYY----NCST--LEDVFLYLCEQDQIL---FSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPV 145 (149)
Q Consensus 75 ~~~~~~~~~~----~~~~--~~~~~~~~~~~~~~~---~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~ 145 (149)
.++.++..+. .... ....+..+++.+++. ........+|+|||||++|||||+.+|+++||||||+|||+.
T Consensus 90 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~ 169 (242)
T cd03295 90 MTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPI 169 (242)
T ss_pred CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHH
Confidence 4555554332 1111 112233333333322 112222346999999999999999999999999999999997
Q ss_pred CC
Q psy10767 146 LS 147 (149)
Q Consensus 146 ~~ 147 (149)
.+
T Consensus 170 ~~ 171 (242)
T cd03295 170 TR 171 (242)
T ss_pred HH
Confidence 64
No 77
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-37 Score=244.49 Aligned_cols=140 Identities=29% Similarity=0.347 Sum_probs=104.4
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec-----------ceeeeeecCcccccCccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV-----------RDIGYMPQVGLMRSGALL 72 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~-----------~~i~~~~q~~~~~~~~~~ 72 (149)
++++|+||++.+||++||+||||||||||+++|+|+++|++|+|+++|.++ +.++|+||++.. . .
T Consensus 21 ~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~---~-~ 96 (287)
T PRK13637 21 KALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEY---Q-L 96 (287)
T ss_pred ceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHhhceEEEecCchh---c-c
Confidence 589999999999999999999999999999999999999999999999765 248999998521 1 1
Q ss_pred ccCChhHHHhhc----ccCc--hHHHHHHHhhhhHHH--H-hhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCC
Q psy10767 73 AEDSPSYLLEYY----NCST--LEDVFLYLCEQDQIL--F-SLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLD 143 (149)
Q Consensus 73 ~~~~~~~~~~~~----~~~~--~~~~~~~~~~~~~~~--~-~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD 143 (149)
...++.++..+. .... ..+.+..+++.+++. . .......+|||||||++|||||+.+|++|||||||+|||
T Consensus 97 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD 176 (287)
T PRK13637 97 FEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLD 176 (287)
T ss_pred ccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCC
Confidence 123444444331 1111 122334444444431 1 112234569999999999999999999999999999999
Q ss_pred cCCC
Q psy10767 144 PVLS 147 (149)
Q Consensus 144 ~~~~ 147 (149)
+..+
T Consensus 177 ~~~~ 180 (287)
T PRK13637 177 PKGR 180 (287)
T ss_pred HHHH
Confidence 9764
No 78
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.4e-37 Score=232.11 Aligned_cols=136 Identities=24% Similarity=0.276 Sum_probs=102.5
Q ss_pred ecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec-------ceeeeeecCcccccCcccccCChhH
Q psy10767 7 SSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV-------RDIGYMPQVGLMRSGALLAEDSPSY 79 (149)
Q Consensus 7 ~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~-------~~i~~~~q~~~~~~~~~~~~~~~~~ 79 (149)
.|+||++.+||+++|+||||||||||+++|+|+++|++|+|+++|.++ +.++|++|++. ++...++.+
T Consensus 15 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~-----~~~~~tv~e 89 (211)
T cd03298 15 MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQENN-----LFAHLTVEQ 89 (211)
T ss_pred cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEEecccc-----cCCCCcHHH
Confidence 389999999999999999999999999999999999999999999765 24899999843 333445555
Q ss_pred HHhhccc---C---chHHHHHHHhhhhHHHH-hhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCCC
Q psy10767 80 LLEYYNC---S---TLEDVFLYLCEQDQILF-SLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 80 ~~~~~~~---~---~~~~~~~~~~~~~~~~~-~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~~ 147 (149)
+..+... . ..+..+..+++..++.. .......+|+|||||++|||||+.+|+++||||||++||+..+
T Consensus 90 nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~ 164 (211)
T cd03298 90 NVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALR 164 (211)
T ss_pred HHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence 5543211 1 11223334444433311 1122235699999999999999999999999999999999765
No 79
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.7e-37 Score=233.72 Aligned_cols=138 Identities=33% Similarity=0.459 Sum_probs=103.2
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec--------ceeeeeecCcccccCcccccC
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV--------RDIGYMPQVGLMRSGALLAED 75 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~--------~~i~~~~q~~~~~~~~~~~~~ 75 (149)
++++|+||++.+| +++|+||||||||||+++|+|+++|++|+|.++|.++ +.++|++|++. ++...
T Consensus 14 ~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~-----~~~~~ 87 (211)
T cd03264 14 RALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQEFG-----VYPNF 87 (211)
T ss_pred EEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEEecCCCc-----ccccC
Confidence 5799999999999 9999999999999999999999999999999999764 35899999843 33334
Q ss_pred ChhHHHhhc----ccCc--hHHHHHHHhhhhHHHH-hhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCCC
Q psy10767 76 SPSYLLEYY----NCST--LEDVFLYLCEQDQILF-SLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 76 ~~~~~~~~~----~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~~ 147 (149)
++.++..+. .... ..+.+..+++..++.. .......+|+|||||++|||||+.+|+++||||||++||+..+
T Consensus 88 tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~ 166 (211)
T cd03264 88 TVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEER 166 (211)
T ss_pred CHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence 555544331 1111 1222333444433311 1122234699999999999999999999999999999999765
No 80
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=4.7e-37 Score=234.12 Aligned_cols=137 Identities=27% Similarity=0.336 Sum_probs=103.4
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec----------ceeeeeecCcccccCcccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV----------RDIGYMPQVGLMRSGALLA 73 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~----------~~i~~~~q~~~~~~~~~~~ 73 (149)
++++|+||++.+||+++|+||||||||||+++|+|+++|++|+|.++|.++ +.++|++|++. ++.
T Consensus 14 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~-----~~~ 88 (230)
T TIGR03410 14 HILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAYVPQGRE-----IFP 88 (230)
T ss_pred EEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEEeccCCc-----ccC
Confidence 579999999999999999999999999999999999999999999998764 24899999843 333
Q ss_pred cCChhHHHhhcc--c-CchHHHHHHHhhhhHH----HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCC
Q psy10767 74 EDSPSYLLEYYN--C-STLEDVFLYLCEQDQI----LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVL 146 (149)
Q Consensus 74 ~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~----~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~ 146 (149)
..++.++..+.. . ....+....+.+..+. .... ...+|+|||||++|||||+.+|+++||||||++||+..
T Consensus 89 ~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~--~~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~ 166 (230)
T TIGR03410 89 RLTVEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRR--GGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSI 166 (230)
T ss_pred CCcHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCC--hhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHH
Confidence 345555443211 1 1112222333333321 2222 23459999999999999999999999999999999976
Q ss_pred C
Q psy10767 147 S 147 (149)
Q Consensus 147 ~ 147 (149)
+
T Consensus 167 ~ 167 (230)
T TIGR03410 167 I 167 (230)
T ss_pred H
Confidence 5
No 81
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.1e-37 Score=253.31 Aligned_cols=137 Identities=21% Similarity=0.298 Sum_probs=106.5
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec-------------ceeeeeecCcccccCc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV-------------RDIGYMPQVGLMRSGA 70 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~-------------~~i~~~~q~~~~~~~~ 70 (149)
++++|+||++++||+++|+||||||||||+|+|+|+++|++|+|+++|.++ +.++|++|+. .
T Consensus 42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~-----~ 116 (400)
T PRK10070 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSF-----A 116 (400)
T ss_pred EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCC-----c
Confidence 479999999999999999999999999999999999999999999999764 2599999984 3
Q ss_pred ccccCChhHHHhhc----ccCc--hHHHHHHHhhhhHH---HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCC
Q psy10767 71 LLAEDSPSYLLEYY----NCST--LEDVFLYLCEQDQI---LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVG 141 (149)
Q Consensus 71 ~~~~~~~~~~~~~~----~~~~--~~~~~~~~~~~~~~---~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~g 141 (149)
+++..++.++..+. .... ..+.+.++++.+++ ..+.. ..||||||||++|||||+.+|++|||||||++
T Consensus 117 l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~--~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~ 194 (400)
T PRK10070 117 LMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYP--DELSGGMRQRVGLARALAINPDILLMDEAFSA 194 (400)
T ss_pred CCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCc--ccCCHHHHHHHHHHHHHhcCCCEEEEECCCcc
Confidence 34445666655432 1111 12233344444433 23333 34599999999999999999999999999999
Q ss_pred CCcCCC
Q psy10767 142 LDPVLS 147 (149)
Q Consensus 142 LD~~~~ 147 (149)
||+..+
T Consensus 195 LD~~~r 200 (400)
T PRK10070 195 LDPLIR 200 (400)
T ss_pred CCHHHH
Confidence 999765
No 82
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=3.8e-37 Score=236.07 Aligned_cols=139 Identities=27% Similarity=0.334 Sum_probs=103.5
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeecc-----------eeeeeecCcccccCccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVR-----------DIGYMPQVGLMRSGALL 72 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~~-----------~i~~~~q~~~~~~~~~~ 72 (149)
.+++|+||++.+||+++|+||||||||||+++|+|+++|++|+|+++|.++. .++|++|++.+ +
T Consensus 15 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~-----~ 89 (240)
T PRK09493 15 QVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYL-----F 89 (240)
T ss_pred EEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceEEEeccccc-----C
Confidence 4789999999999999999999999999999999999999999999997642 48999998432 3
Q ss_pred ccCChhHHHhhc-----ccCc--hHHHHHHHhhhhHHHH-hhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCc
Q psy10767 73 AEDSPSYLLEYY-----NCST--LEDVFLYLCEQDQILF-SLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDP 144 (149)
Q Consensus 73 ~~~~~~~~~~~~-----~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~ 144 (149)
...++.++..+. .... ..+.+.++++..++.. .......+|+|||||++||||++.+|+++||||||++||+
T Consensus 90 ~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~ 169 (240)
T PRK09493 90 PHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDP 169 (240)
T ss_pred CCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCH
Confidence 334444444321 1111 1122333333333311 1122235699999999999999999999999999999999
Q ss_pred CCC
Q psy10767 145 VLS 147 (149)
Q Consensus 145 ~~~ 147 (149)
..+
T Consensus 170 ~~~ 172 (240)
T PRK09493 170 ELR 172 (240)
T ss_pred HHH
Confidence 765
No 83
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=4.1e-37 Score=233.70 Aligned_cols=141 Identities=26% Similarity=0.300 Sum_probs=102.3
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec------------ceeeeeecCcccccCcc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV------------RDIGYMPQVGLMRSGAL 71 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~------------~~i~~~~q~~~~~~~~~ 71 (149)
.+++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++ +.++|++|++.. .+
T Consensus 19 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~---~~ 95 (228)
T cd03257 19 KALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMS---SL 95 (228)
T ss_pred eeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhhccEEEEecCchh---hc
Confidence 589999999999999999999999999999999999999999999999764 258999998521 12
Q ss_pred cccCChhHHHhh----cccCchH---HH-HHHHhhhhHHH--HhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCC
Q psy10767 72 LAEDSPSYLLEY----YNCSTLE---DV-FLYLCEQDQIL--FSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVG 141 (149)
Q Consensus 72 ~~~~~~~~~~~~----~~~~~~~---~~-~~~~~~~~~~~--~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~g 141 (149)
....++.++..+ ....... .. ...+++..++. ........+|+|||||++|||||+.+|++|||||||++
T Consensus 96 ~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~ 175 (228)
T cd03257 96 NPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSA 175 (228)
T ss_pred CCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHHhcCCCEEEecCCCCC
Confidence 223444444432 1111111 11 11233332221 11122334699999999999999999999999999999
Q ss_pred CCcCCC
Q psy10767 142 LDPVLS 147 (149)
Q Consensus 142 LD~~~~ 147 (149)
||+..+
T Consensus 176 LD~~~~ 181 (228)
T cd03257 176 LDVSVQ 181 (228)
T ss_pred CCHHHH
Confidence 999764
No 84
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=4.7e-37 Score=239.65 Aligned_cols=139 Identities=24% Similarity=0.369 Sum_probs=102.8
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec------------ceeeeeecCcccccCcc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV------------RDIGYMPQVGLMRSGAL 71 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~------------~~i~~~~q~~~~~~~~~ 71 (149)
.+++|+||++.+||+++|+||||||||||+++|+|+++|++|+|+++|.++ +.++|++|+.. +
T Consensus 21 ~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~-----~ 95 (269)
T PRK11831 21 CIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGA-----L 95 (269)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhhcEEEEecccc-----c
Confidence 478999999999999999999999999999999999999999999998754 24899999843 2
Q ss_pred cccCChhHHHhhc----c-cCch--HHHHHHHhhhhHHHH-hhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCC
Q psy10767 72 LAEDSPSYLLEYY----N-CSTL--EDVFLYLCEQDQILF-SLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLD 143 (149)
Q Consensus 72 ~~~~~~~~~~~~~----~-~~~~--~~~~~~~~~~~~~~~-~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD 143 (149)
+...++.++..+. . .... ...+...++.+++.. .......+|||||||++|||||+.+|+++||||||++||
T Consensus 96 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD 175 (269)
T PRK11831 96 FTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQD 175 (269)
T ss_pred CCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCC
Confidence 3334455544321 1 1111 122223333333311 112223469999999999999999999999999999999
Q ss_pred cCCC
Q psy10767 144 PVLS 147 (149)
Q Consensus 144 ~~~~ 147 (149)
+..+
T Consensus 176 ~~~~ 179 (269)
T PRK11831 176 PITM 179 (269)
T ss_pred HHHH
Confidence 9765
No 85
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=3.2e-37 Score=252.46 Aligned_cols=137 Identities=28% Similarity=0.343 Sum_probs=105.4
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec---------ceeeeeecCcccccCccccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV---------RDIGYMPQVGLMRSGALLAE 74 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~---------~~i~~~~q~~~~~~~~~~~~ 74 (149)
.+++++||++++||+++|+||||||||||+|+|+|+++|++|+|+++|.++ +.++|++|++. +...
T Consensus 17 ~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~-----l~~~ 91 (402)
T PRK09536 17 TVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVASVPQDTS-----LSFE 91 (402)
T ss_pred EEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEEEccCCC-----CCCC
Confidence 479999999999999999999999999999999999999999999999775 34999999843 2333
Q ss_pred CChhHHHhhcc------c---C-chHHHHHHHhhhhHH---HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCC
Q psy10767 75 DSPSYLLEYYN------C---S-TLEDVFLYLCEQDQI---LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVG 141 (149)
Q Consensus 75 ~~~~~~~~~~~------~---~-~~~~~~~~~~~~~~~---~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~g 141 (149)
.++.++..+.. . . ...+.+.++++..++ ..+... .+|+|||||++|||||+++|++|||||||++
T Consensus 92 ~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~--~LSgGerQRv~IArAL~~~P~iLLLDEPtsg 169 (402)
T PRK09536 92 FDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVT--SLSGGERQRVLLARALAQATPVLLLDEPTAS 169 (402)
T ss_pred CCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChh--hCCHHHHHHHHHHHHHHcCCCEEEEECCccc
Confidence 45555443311 1 1 112334444444443 233333 4599999999999999999999999999999
Q ss_pred CCcCCC
Q psy10767 142 LDPVLS 147 (149)
Q Consensus 142 LD~~~~ 147 (149)
||+..+
T Consensus 170 LD~~~~ 175 (402)
T PRK09536 170 LDINHQ 175 (402)
T ss_pred CCHHHH
Confidence 999754
No 86
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.9e-37 Score=233.28 Aligned_cols=138 Identities=21% Similarity=0.320 Sum_probs=101.3
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec---------ceeeeeecCcccccCccccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV---------RDIGYMPQVGLMRSGALLAE 74 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~---------~~i~~~~q~~~~~~~~~~~~ 74 (149)
++++|+||++++|++++|+||||||||||+++|+|+.+|++|+|.++|.++ +.++|++|++.+ +.
T Consensus 17 ~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~-----~~- 90 (229)
T cd03254 17 PVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGVVLQDTFL-----FS- 90 (229)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEEecCCchh-----hh-
Confidence 489999999999999999999999999999999999999999999999764 248999998432 22
Q ss_pred CChhHHHhhcccCchHHHHHHHhhhhHH---HHhh---------cCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCC
Q psy10767 75 DSPSYLLEYYNCSTLEDVFLYLCEQDQI---LFSL---------VGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGL 142 (149)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~---------~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gL 142 (149)
.++.++..+..............+.... .... .....+|+|||||++|||||+.+|+++||||||+||
T Consensus 91 ~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~llllDEP~~~L 170 (229)
T cd03254 91 GTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNI 170 (229)
T ss_pred hHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccC
Confidence 2445554433211111112111111111 1110 112356999999999999999999999999999999
Q ss_pred CcCCC
Q psy10767 143 DPVLS 147 (149)
Q Consensus 143 D~~~~ 147 (149)
|+..+
T Consensus 171 D~~~~ 175 (229)
T cd03254 171 DTETE 175 (229)
T ss_pred CHHHH
Confidence 98765
No 87
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=3.8e-37 Score=235.20 Aligned_cols=137 Identities=26% Similarity=0.253 Sum_probs=101.8
Q ss_pred eecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeecc----eeeeeecCcccccCcccccCChhHHH
Q psy10767 6 ASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVR----DIGYMPQVGLMRSGALLAEDSPSYLL 81 (149)
Q Consensus 6 ~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~~----~i~~~~q~~~~~~~~~~~~~~~~~~~ 81 (149)
++++||++.+||+++|+||||||||||+++|+|+++|++|+|.++|.++. ..+|++|++. ++...++.++.
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~-----l~~~~tv~e~l 75 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYS-----LLPWLTVRENI 75 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhheEEecCcc-----cCCCCCHHHHH
Confidence 57999999999999999999999999999999999999999999998763 2589999743 33344555554
Q ss_pred hhc------ccCch--HHHHHHHhhhhHHHH-hhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCCC
Q psy10767 82 EYY------NCSTL--EDVFLYLCEQDQILF-SLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 82 ~~~------~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~~ 147 (149)
.+. ..... .+.+..+++.+++.. .......+|||||||++|||||+.+|+++||||||+|||+..+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~ 150 (230)
T TIGR01184 76 ALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTR 150 (230)
T ss_pred HHHHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHH
Confidence 331 11111 122333344333311 1112234599999999999999999999999999999999765
No 88
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=4.3e-37 Score=235.92 Aligned_cols=137 Identities=24% Similarity=0.285 Sum_probs=103.4
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec----------ceeeeeecCcccccCcccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV----------RDIGYMPQVGLMRSGALLA 73 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~----------~~i~~~~q~~~~~~~~~~~ 73 (149)
++++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++ +.++|++|++. ++.
T Consensus 16 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~-----~~~ 90 (242)
T TIGR03411 16 KALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIGRKFQKPT-----VFE 90 (242)
T ss_pred EEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCeeEeccccc-----cCC
Confidence 479999999999999999999999999999999999999999999999764 24899999843 334
Q ss_pred cCChhHHHhhccc------------C--chHHHHHHHhhhhHH---HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEc
Q psy10767 74 EDSPSYLLEYYNC------------S--TLEDVFLYLCEQDQI---LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILD 136 (149)
Q Consensus 74 ~~~~~~~~~~~~~------------~--~~~~~~~~~~~~~~~---~~~~~~~~~~sgGqkqrv~iaral~~~p~illlD 136 (149)
..++.++..+... . .....+..+++.+++ ..... ..+|+|||||++||||++.+|+++|||
T Consensus 91 ~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~LS~Ge~qrv~laral~~~p~~lllD 168 (242)
T TIGR03411 91 NLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLA--GLLSHGQKQWLEIGMLLMQDPKLLLLD 168 (242)
T ss_pred CCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCCh--hhCCHHHHHHHHHHHHHhcCCCEEEec
Confidence 4455554433210 0 012223333333332 12222 345999999999999999999999999
Q ss_pred CCCCCCCcCCC
Q psy10767 137 EPTVGLDPVLS 147 (149)
Q Consensus 137 EPt~gLD~~~~ 147 (149)
|||++||+..+
T Consensus 169 EPt~~LD~~~~ 179 (242)
T TIGR03411 169 EPVAGMTDEET 179 (242)
T ss_pred CCccCCCHHHH
Confidence 99999999765
No 89
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4e-37 Score=240.20 Aligned_cols=140 Identities=22% Similarity=0.274 Sum_probs=101.2
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec-----------ceeeeeecCcccccCccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV-----------RDIGYMPQVGLMRSGALL 72 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~-----------~~i~~~~q~~~~~~~~~~ 72 (149)
.+++++||++.+||+++|+||||||||||+++|+|+++|++|+|.++|.++ +.++|++|++... .
T Consensus 15 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~----~ 90 (271)
T PRK13638 15 PVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQ----I 90 (271)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhheEEEeeChhhc----c
Confidence 479999999999999999999999999999999999999999999999764 2489999985311 1
Q ss_pred ccCChhHHHhh----cccCch--HHHHHHHhhhhHHHH-hhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcC
Q psy10767 73 AEDSPSYLLEY----YNCSTL--EDVFLYLCEQDQILF-SLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPV 145 (149)
Q Consensus 73 ~~~~~~~~~~~----~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~ 145 (149)
...++.++..+ ...... ......+++.+++.. .......+|||||||++|||||+.+|++|||||||++||+.
T Consensus 91 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~ 170 (271)
T PRK13638 91 FYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPA 170 (271)
T ss_pred ccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHH
Confidence 11222333222 111111 122233333333211 11223346999999999999999999999999999999997
Q ss_pred CC
Q psy10767 146 LS 147 (149)
Q Consensus 146 ~~ 147 (149)
.+
T Consensus 171 ~~ 172 (271)
T PRK13638 171 GR 172 (271)
T ss_pred HH
Confidence 64
No 90
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.8e-37 Score=235.80 Aligned_cols=139 Identities=26% Similarity=0.273 Sum_probs=103.3
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec---------------ceeeeeecCccccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV---------------RDIGYMPQVGLMRS 68 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~---------------~~i~~~~q~~~~~~ 68 (149)
.+++|+||++.+||+++|+||||||||||+++|+|+++|++|+|.++|.++ +.++|++|++.
T Consensus 16 ~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~--- 92 (242)
T PRK11124 16 QALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYN--- 92 (242)
T ss_pred eeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHHhheEEEecCcc---
Confidence 579999999999999999999999999999999999999999999999753 24899999843
Q ss_pred CcccccCChhHHHhh-----cccCc--hHHHHHHHhhhhHHHH-hhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCC
Q psy10767 69 GALLAEDSPSYLLEY-----YNCST--LEDVFLYLCEQDQILF-SLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTV 140 (149)
Q Consensus 69 ~~~~~~~~~~~~~~~-----~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~ 140 (149)
++...++.++... ..... ....+..+++..++.. .......+|+|||||++||||++.+|+++||||||+
T Consensus 93 --~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEPt~ 170 (242)
T PRK11124 93 --LWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTA 170 (242)
T ss_pred --ccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCC
Confidence 3333455554432 11111 1122233333333311 112223469999999999999999999999999999
Q ss_pred CCCcCCC
Q psy10767 141 GLDPVLS 147 (149)
Q Consensus 141 gLD~~~~ 147 (149)
+||+..+
T Consensus 171 ~LD~~~~ 177 (242)
T PRK11124 171 ALDPEIT 177 (242)
T ss_pred cCCHHHH
Confidence 9999765
No 91
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.6e-37 Score=241.35 Aligned_cols=140 Identities=24% Similarity=0.323 Sum_probs=103.6
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec-------------ceeeeeecCcccccCc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV-------------RDIGYMPQVGLMRSGA 70 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~-------------~~i~~~~q~~~~~~~~ 70 (149)
++++|+||++.+||+++|+||||||||||+++|+|+++|++|+|+++|+++ ..++|++|++.. .
T Consensus 21 ~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~---~ 97 (287)
T PRK13641 21 KGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEA---Q 97 (287)
T ss_pred cceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhceEEEEeChhh---h
Confidence 589999999999999999999999999999999999999999999999764 248999998421 1
Q ss_pred ccccCChhHHHhhc----ccCc--hHHHHHHHhhhhHHH--HhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCC
Q psy10767 71 LLAEDSPSYLLEYY----NCST--LEDVFLYLCEQDQIL--FSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGL 142 (149)
Q Consensus 71 ~~~~~~~~~~~~~~----~~~~--~~~~~~~~~~~~~~~--~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gL 142 (149)
++ ..++.++..+. .... ....+..+++.+++. ........+|+|||||++|||||+.+|++|||||||+||
T Consensus 98 ~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~~~p~lLlLDEPt~gL 176 (287)
T PRK13641 98 LF-ENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGL 176 (287)
T ss_pred hc-cchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCC
Confidence 11 23444444321 1111 122233444443331 112233456999999999999999999999999999999
Q ss_pred CcCCC
Q psy10767 143 DPVLS 147 (149)
Q Consensus 143 D~~~~ 147 (149)
|+..+
T Consensus 177 D~~~~ 181 (287)
T PRK13641 177 DPEGR 181 (287)
T ss_pred CHHHH
Confidence 99764
No 92
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=6e-37 Score=229.47 Aligned_cols=137 Identities=21% Similarity=0.207 Sum_probs=103.0
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec--------ceeeeeecCcccccCcccccC
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV--------RDIGYMPQVGLMRSGALLAED 75 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~--------~~i~~~~q~~~~~~~~~~~~~ 75 (149)
.+++++||++++||+++|+||||||||||+++|+|+++|++|+|+++|+++ +.++|++|+.. +.+..
T Consensus 15 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~~~q~~~-----~~~~~ 89 (200)
T PRK13540 15 PLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFVGHRSG-----INPYL 89 (200)
T ss_pred eEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheEEeccccc-----cCcCC
Confidence 479999999999999999999999999999999999999999999999764 35899998742 22334
Q ss_pred ChhHHHhhcc-cCchHHHHHHHhhhhHH---HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCCC
Q psy10767 76 SPSYLLEYYN-CSTLEDVFLYLCEQDQI---LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 76 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~~ 147 (149)
++.++..+.. ....+.....+++..++ ..... ..+|+|||||++||||++.+|+++||||||++||+..+
T Consensus 90 tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~LS~G~~~rv~laral~~~p~~lilDEP~~~LD~~~~ 163 (200)
T PRK13540 90 TLRENCLYDIHFSPGAVGITELCRLFSLEHLIDYPC--GLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSL 163 (200)
T ss_pred CHHHHHHHHHhcCcchHHHHHHHHHcCCchhhhCCh--hhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHH
Confidence 5555543321 11112223333333322 22222 34699999999999999999999999999999998764
No 93
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=5.9e-37 Score=236.13 Aligned_cols=139 Identities=25% Similarity=0.309 Sum_probs=102.5
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec-----------------ceeeeeecCccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV-----------------RDIGYMPQVGLM 66 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~-----------------~~i~~~~q~~~~ 66 (149)
.+++|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++ +.++|++|++.+
T Consensus 17 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~ 96 (250)
T PRK11264 17 TVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFNL 96 (250)
T ss_pred eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHHHhhhhEEEEecCccc
Confidence 479999999999999999999999999999999999999999999998653 248999998432
Q ss_pred ccCcccccCChhHHHhhc-----ccCc--hHHHHHHHhhhhHHHH-hhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCC
Q psy10767 67 RSGALLAEDSPSYLLEYY-----NCST--LEDVFLYLCEQDQILF-SLVGSESAFGGQQRRVSFAVSLIHDPKILILDEP 138 (149)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~-----~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~sgGqkqrv~iaral~~~p~illlDEP 138 (149)
++..++.++..+. .... ..+.+..+++.+++.. .......+|+|||||++|||||+.+|++||||||
T Consensus 97 -----~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~~~p~lllLDEP 171 (250)
T PRK11264 97 -----FPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEP 171 (250)
T ss_pred -----CCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 3334444444321 1111 1122233333333211 1122234699999999999999999999999999
Q ss_pred CCCCCcCCC
Q psy10767 139 TVGLDPVLS 147 (149)
Q Consensus 139 t~gLD~~~~ 147 (149)
|++||+..+
T Consensus 172 t~~LD~~~~ 180 (250)
T PRK11264 172 TSALDPELV 180 (250)
T ss_pred CccCCHHHH
Confidence 999999765
No 94
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-36 Score=233.24 Aligned_cols=139 Identities=21% Similarity=0.380 Sum_probs=103.2
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec----------ceeeeeecCcccccCcccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV----------RDIGYMPQVGLMRSGALLA 73 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~----------~~i~~~~q~~~~~~~~~~~ 73 (149)
++++++||++.+||+++|+||||||||||+++|+|+++|++|+|.++|.++ +.++|++|+.. ++.
T Consensus 19 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~-----~~~ 93 (237)
T PRK11614 19 QALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVAIVPEGRR-----VFS 93 (237)
T ss_pred eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCEEEeccCcc-----cCC
Confidence 579999999999999999999999999999999999999999999999764 24899999843 333
Q ss_pred cCChhHHHhhcc--cC--chHHHHHHHhhhhH-HH-HhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCCC
Q psy10767 74 EDSPSYLLEYYN--CS--TLEDVFLYLCEQDQ-IL-FSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 74 ~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~-~~-~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~~ 147 (149)
..++.++..+.. .. .....+..+.+... +. ........+|+|||||++||||++.+|+++||||||+|||+..+
T Consensus 94 ~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~ 173 (237)
T PRK11614 94 RMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIII 173 (237)
T ss_pred CCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHH
Confidence 345555543311 11 11222223333331 21 11122334699999999999999999999999999999999764
No 95
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=5.7e-37 Score=258.13 Aligned_cols=137 Identities=26% Similarity=0.330 Sum_probs=106.6
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeecc--------eeeeeecCcccccCcccccC
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVR--------DIGYMPQVGLMRSGALLAED 75 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~~--------~i~~~~q~~~~~~~~~~~~~ 75 (149)
++++|+||++++||.++|+||||||||||+++|+|+++|++|+|.++|.+++ .|+||||++.++. .
T Consensus 349 ~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i~~V~Q~~~lF~------~ 422 (529)
T TIGR02868 349 PVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRISVFAQDAHLFD------T 422 (529)
T ss_pred ceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhheEEEccCccccc------c
Confidence 4799999999999999999999999999999999999999999999998874 6999999965443 3
Q ss_pred ChhHHHhhcccCchHHHHHHHhhhhHH----------HHhhcCC--CCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCC
Q psy10767 76 SPSYLLEYYNCSTLEDVFLYLCEQDQI----------LFSLVGS--ESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLD 143 (149)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~--~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD 143 (149)
++.+|..+......++...++++..+. .+..++. ..+|||||||++||||++++|+++|||||||+||
T Consensus 423 TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD 502 (529)
T TIGR02868 423 TVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLD 502 (529)
T ss_pred cHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 566666553222223333333332211 1222222 3479999999999999999999999999999999
Q ss_pred cCC
Q psy10767 144 PVL 146 (149)
Q Consensus 144 ~~~ 146 (149)
+..
T Consensus 503 ~~t 505 (529)
T TIGR02868 503 AGT 505 (529)
T ss_pred HHH
Confidence 865
No 96
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=9.9e-37 Score=233.23 Aligned_cols=138 Identities=24% Similarity=0.329 Sum_probs=101.0
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec---------ceeeeeecCcccccCccccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV---------RDIGYMPQVGLMRSGALLAE 74 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~---------~~i~~~~q~~~~~~~~~~~~ 74 (149)
++++++||++.+||+++|+||||||||||+++|+|+++|++|+|.++|.++ +.++|++|++.+ + .
T Consensus 16 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~-----~-~ 89 (237)
T cd03252 16 VILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGVVLQENVL-----F-N 89 (237)
T ss_pred cceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEEEcCCchh-----c-c
Confidence 589999999999999999999999999999999999999999999999764 348999998432 2 2
Q ss_pred CChhHHHhhcccCchHHHHHHHhhh---hHHHHh---------hcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCC
Q psy10767 75 DSPSYLLEYYNCSTLEDVFLYLCEQ---DQILFS---------LVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGL 142 (149)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~---------~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gL 142 (149)
.++.++..+..............+. ...... ......+|+|||||++||||++.+|+++||||||++|
T Consensus 90 ~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~~L 169 (237)
T cd03252 90 RSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSAL 169 (237)
T ss_pred chHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccC
Confidence 3455554432111111111111111 011110 1123456999999999999999999999999999999
Q ss_pred CcCCC
Q psy10767 143 DPVLS 147 (149)
Q Consensus 143 D~~~~ 147 (149)
|+..+
T Consensus 170 D~~~~ 174 (237)
T cd03252 170 DYESE 174 (237)
T ss_pred CHHHH
Confidence 99765
No 97
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.4e-37 Score=240.53 Aligned_cols=138 Identities=24% Similarity=0.233 Sum_probs=103.9
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec---------ceeeeeecCcccccCccccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV---------RDIGYMPQVGLMRSGALLAE 74 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~---------~~i~~~~q~~~~~~~~~~~~ 74 (149)
.+++|+||++.+||++||+||||||||||+++|+|+++|++|+|+++|.++ +.++|+||++.. .+..
T Consensus 19 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~----~~~~ 94 (274)
T PRK13647 19 KALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGLVFQDPDD----QVFS 94 (274)
T ss_pred eeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEEEEecChhh----hhcc
Confidence 489999999999999999999999999999999999999999999999775 248999998421 1122
Q ss_pred CChhHHHhhc----ccCc--hHHHHHHHhhhhHH---HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcC
Q psy10767 75 DSPSYLLEYY----NCST--LEDVFLYLCEQDQI---LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPV 145 (149)
Q Consensus 75 ~~~~~~~~~~----~~~~--~~~~~~~~~~~~~~---~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~ 145 (149)
.++.++..+. .... ..+.+..+++.+++ ..+.+ ..+|||||||++|||||+.+|++|||||||++||+.
T Consensus 95 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~--~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~ 172 (274)
T PRK13647 95 STVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPP--YHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPR 172 (274)
T ss_pred CcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCh--hhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHH
Confidence 3444444331 1111 12223334444333 22233 345999999999999999999999999999999997
Q ss_pred CC
Q psy10767 146 LS 147 (149)
Q Consensus 146 ~~ 147 (149)
.+
T Consensus 173 ~~ 174 (274)
T PRK13647 173 GQ 174 (274)
T ss_pred HH
Confidence 65
No 98
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8e-37 Score=224.24 Aligned_cols=110 Identities=39% Similarity=0.671 Sum_probs=93.5
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec--------ceeeeeecCcccccCcccccC
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV--------RDIGYMPQVGLMRSGALLAED 75 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~--------~~i~~~~q~~~~~~~~~~~~~ 75 (149)
.+++++||++.+||+++|+||||||||||+++|+|+++|++|+|.++|.++ +.++|++|++. ++...
T Consensus 14 ~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~-----~~~~~ 88 (173)
T cd03230 14 TALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPS-----LYENL 88 (173)
T ss_pred eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEecCCc-----cccCC
Confidence 479999999999999999999999999999999999999999999999764 35889999732 22222
Q ss_pred ChhHHHhhcccCchHHHHHHHhhhhHHHHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCCC
Q psy10767 76 SPSYLLEYYNCSTLEDVFLYLCEQDQILFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~~ 147 (149)
++.++.. +|+|||||++|||||+.+|+++||||||++||+..+
T Consensus 89 tv~~~~~-----------------------------LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~ 131 (173)
T cd03230 89 TVRENLK-----------------------------LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESR 131 (173)
T ss_pred cHHHHhh-----------------------------cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHH
Confidence 3332210 499999999999999999999999999999998765
No 99
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=9.4e-37 Score=234.91 Aligned_cols=138 Identities=28% Similarity=0.389 Sum_probs=102.4
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCC-----cceEEECCeec-----------ceeeeeecCcccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLD-----HGSISLSARTV-----------RDIGYMPQVGLMR 67 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~-----~G~i~~~g~~~-----------~~i~~~~q~~~~~ 67 (149)
.+++|+||++++||+++|+|+||||||||+++|+|+++|+ +|+|.++|.++ +.++|+||++.+
T Consensus 15 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~- 93 (247)
T TIGR00972 15 EALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNP- 93 (247)
T ss_pred eeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCccc-
Confidence 4789999999999999999999999999999999999998 99999999764 248999998432
Q ss_pred cCcccccCChhHHHhhc----ccCc---hHHHHHHHhhhhHHH----H-hhcCCCCCChhHHHHHHHHHHHhcCCCEEEE
Q psy10767 68 SGALLAEDSPSYLLEYY----NCST---LEDVFLYLCEQDQIL----F-SLVGSESAFGGQQRRVSFAVSLIHDPKILIL 135 (149)
Q Consensus 68 ~~~~~~~~~~~~~~~~~----~~~~---~~~~~~~~~~~~~~~----~-~~~~~~~~sgGqkqrv~iaral~~~p~illl 135 (149)
+. .++.++..+. .... .......+++..++. . .......+|+|||||++|||||+.+|+++||
T Consensus 94 ----~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llll 168 (247)
T TIGR00972 94 ----FP-MSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLL 168 (247)
T ss_pred ----CC-CCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 22 4444444321 1111 112233333333321 1 1122345699999999999999999999999
Q ss_pred cCCCCCCCcCCC
Q psy10767 136 DEPTVGLDPVLS 147 (149)
Q Consensus 136 DEPt~gLD~~~~ 147 (149)
||||++||+..+
T Consensus 169 DEPt~~LD~~~~ 180 (247)
T TIGR00972 169 DEPTSALDPIAT 180 (247)
T ss_pred eCCcccCCHHHH
Confidence 999999998764
No 100
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.5e-37 Score=226.05 Aligned_cols=112 Identities=38% Similarity=0.506 Sum_probs=92.9
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec-----------ceeeeeecCcccccCccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV-----------RDIGYMPQVGLMRSGALL 72 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~-----------~~i~~~~q~~~~~~~~~~ 72 (149)
++++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++ +.++|++|++. ++
T Consensus 14 ~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~-----~~ 88 (178)
T cd03229 14 TVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFA-----LF 88 (178)
T ss_pred EEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEEEEecCCc-----cC
Confidence 479999999999999999999999999999999999999999999999754 24778888632 22
Q ss_pred ccCChhHHHhhcccCchHHHHHHHhhhhHHHHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCCC
Q psy10767 73 AEDSPSYLLEYYNCSTLEDVFLYLCEQDQILFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~~ 147 (149)
...++.++..+. +|+|||||++|||||+.+|+++||||||+|||+..+
T Consensus 89 ~~~t~~~~l~~~---------------------------lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~ 136 (178)
T cd03229 89 PHLTVLENIALG---------------------------LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITR 136 (178)
T ss_pred CCCCHHHheeec---------------------------CCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHH
Confidence 223333222110 499999999999999999999999999999999764
No 101
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.6e-37 Score=240.98 Aligned_cols=140 Identities=21% Similarity=0.220 Sum_probs=104.6
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec---------ceeeeeecCcccccCccccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV---------RDIGYMPQVGLMRSGALLAE 74 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~---------~~i~~~~q~~~~~~~~~~~~ 74 (149)
.+++|+||+|.+||+++|+||||||||||+++|+|+++|++|+|+++|.++ +.++|++|++. ..+..
T Consensus 21 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~----~~~~~ 96 (279)
T PRK13650 21 YTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKIGMVFQNPD----NQFVG 96 (279)
T ss_pred eeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhceEEEcChH----Hhccc
Confidence 489999999999999999999999999999999999999999999999875 25899999842 11223
Q ss_pred CChhHHHhhc----ccCc--hHHHHHHHhhhhHHHH-hhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCCC
Q psy10767 75 DSPSYLLEYY----NCST--LEDVFLYLCEQDQILF-SLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 75 ~~~~~~~~~~----~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~~ 147 (149)
.++.++..+. .... ..+....+++.+++.. .......+|+|||||++|||||+.+|++|||||||+|||+..+
T Consensus 97 ~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~ 176 (279)
T PRK13650 97 ATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGR 176 (279)
T ss_pred ccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHH
Confidence 3444444331 1111 1223344444444321 1122235699999999999999999999999999999999764
No 102
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.1e-37 Score=235.71 Aligned_cols=139 Identities=26% Similarity=0.343 Sum_probs=102.4
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeecc----------eeeeeecCcccccCcccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVR----------DIGYMPQVGLMRSGALLA 73 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~~----------~i~~~~q~~~~~~~~~~~ 73 (149)
++++++||++.+|++++|+||||||||||+++|+|+++|++|+|.++|.++. .++|+||++. ++.
T Consensus 19 ~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~-----~~~ 93 (255)
T PRK11300 19 LAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVVRTFQHVR-----LFR 93 (255)
T ss_pred EEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCeEEeccCcc-----cCC
Confidence 4799999999999999999999999999999999999999999999997641 3788999843 333
Q ss_pred cCChhHHHhhcc-----------c------C-c---hHHHHHHHhhhhHHH-HhhcCCCCCChhHHHHHHHHHHHhcCCC
Q psy10767 74 EDSPSYLLEYYN-----------C------S-T---LEDVFLYLCEQDQIL-FSLVGSESAFGGQQRRVSFAVSLIHDPK 131 (149)
Q Consensus 74 ~~~~~~~~~~~~-----------~------~-~---~~~~~~~~~~~~~~~-~~~~~~~~~sgGqkqrv~iaral~~~p~ 131 (149)
..++.++..+.. . . . ....+..+++.+++. ........+|+|||||++||||++.+|+
T Consensus 94 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 173 (255)
T PRK11300 94 EMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLEIARCMVTQPE 173 (255)
T ss_pred CCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 445554443210 0 0 0 011222333333331 1112223459999999999999999999
Q ss_pred EEEEcCCCCCCCcCCC
Q psy10767 132 ILILDEPTVGLDPVLS 147 (149)
Q Consensus 132 illlDEPt~gLD~~~~ 147 (149)
+|||||||+|||+..+
T Consensus 174 llllDEPt~~LD~~~~ 189 (255)
T PRK11300 174 ILMLDEPAAGLNPKET 189 (255)
T ss_pred EEEEcCCccCCCHHHH
Confidence 9999999999999765
No 103
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=1.4e-36 Score=231.35 Aligned_cols=138 Identities=24% Similarity=0.329 Sum_probs=103.6
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec---------ceeeeeecCcccccCccccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV---------RDIGYMPQVGLMRSGALLAE 74 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~---------~~i~~~~q~~~~~~~~~~~~ 74 (149)
.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++ +.++|++|++.+ +.
T Consensus 21 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l-----~~- 94 (225)
T PRK10247 21 KILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVSYCAQTPTL-----FG- 94 (225)
T ss_pred eeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccEEEeccccc-----cc-
Confidence 479999999999999999999999999999999999999999999999764 358999998433 22
Q ss_pred CChhHHHhhc----ccCchHHHHHHHhhhhHHH--HhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCCC
Q psy10767 75 DSPSYLLEYY----NCSTLEDVFLYLCEQDQIL--FSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 75 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~--~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~~ 147 (149)
.++.++..+. ...........+++.+++. ........+|+|||||++|||||+.+|+++||||||++||+..+
T Consensus 95 ~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~ 173 (225)
T PRK10247 95 DTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNK 173 (225)
T ss_pred ccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence 2455544321 1111122233344443331 11122334699999999999999999999999999999999764
No 104
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.4e-37 Score=241.84 Aligned_cols=140 Identities=25% Similarity=0.345 Sum_probs=103.9
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec-------------ceeeeeecCcccccCc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV-------------RDIGYMPQVGLMRSGA 70 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~-------------~~i~~~~q~~~~~~~~ 70 (149)
++++|+||+|++||++||+||||||||||+++|+|+++|++|+|+++|.++ +.|+|+||++.. .
T Consensus 21 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~---~ 97 (286)
T PRK13646 21 QAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPES---Q 97 (286)
T ss_pred CceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhheEEEecChHh---c
Confidence 599999999999999999999999999999999999999999999999764 248999998421 1
Q ss_pred ccccCChhHHHhhc----ccCc--hHHHHHHHhhhhHHH-H-hhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCC
Q psy10767 71 LLAEDSPSYLLEYY----NCST--LEDVFLYLCEQDQIL-F-SLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGL 142 (149)
Q Consensus 71 ~~~~~~~~~~~~~~----~~~~--~~~~~~~~~~~~~~~-~-~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gL 142 (149)
++. .++.++..+. .... ..+.+..+++.+++. . .......+|+|||||++|||||+.+|+++||||||+||
T Consensus 98 l~~-~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~~~p~illlDEPt~~L 176 (286)
T PRK13646 98 LFE-DTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGL 176 (286)
T ss_pred cch-hhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccC
Confidence 111 2444444321 1111 122333444444431 1 11233456999999999999999999999999999999
Q ss_pred CcCCC
Q psy10767 143 DPVLS 147 (149)
Q Consensus 143 D~~~~ 147 (149)
|+..+
T Consensus 177 D~~~~ 181 (286)
T PRK13646 177 DPQSK 181 (286)
T ss_pred CHHHH
Confidence 99765
No 105
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=1.7e-36 Score=228.94 Aligned_cols=138 Identities=27% Similarity=0.328 Sum_probs=103.2
Q ss_pred ceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec-------ceeeeeecCcccccCcccccCCh
Q psy10767 5 SASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV-------RDIGYMPQVGLMRSGALLAEDSP 77 (149)
Q Consensus 5 ~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~-------~~i~~~~q~~~~~~~~~~~~~~~ 77 (149)
.++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++ +.++|++|++. ++...++
T Consensus 13 ~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~-----~~~~~t~ 87 (213)
T TIGR01277 13 LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQENN-----LFAHLTV 87 (213)
T ss_pred cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEeccCc-----cCCCCcH
Confidence 35799999999999999999999999999999999999999999999875 34899999843 3333455
Q ss_pred hHHHhhc---ccC---chHHHHHHHhhhhHHHH-hhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCCC
Q psy10767 78 SYLLEYY---NCS---TLEDVFLYLCEQDQILF-SLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 78 ~~~~~~~---~~~---~~~~~~~~~~~~~~~~~-~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~~ 147 (149)
.++..+. ... .......++++..++.. .......+|+|||||++||||++.+|+++||||||++||+..+
T Consensus 88 ~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~ 164 (213)
T TIGR01277 88 RQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLR 164 (213)
T ss_pred HHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHH
Confidence 5554321 111 11223333444443311 1122235699999999999999999999999999999998764
No 106
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.6e-37 Score=239.80 Aligned_cols=138 Identities=22% Similarity=0.262 Sum_probs=104.6
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec---------ceeeeeecCcccccCccccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV---------RDIGYMPQVGLMRSGALLAE 74 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~---------~~i~~~~q~~~~~~~~~~~~ 74 (149)
++++++||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|.++ +.++|++|++. ..+..
T Consensus 21 ~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~----~~~~~ 96 (279)
T PRK13635 21 YALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVGMVFQNPD----NQFVG 96 (279)
T ss_pred cceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheEEEEeCHH----Hhccc
Confidence 589999999999999999999999999999999999999999999999875 25899999842 11223
Q ss_pred CChhHHHhhc----ccCc--hHHHHHHHhhhhHH---HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcC
Q psy10767 75 DSPSYLLEYY----NCST--LEDVFLYLCEQDQI---LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPV 145 (149)
Q Consensus 75 ~~~~~~~~~~----~~~~--~~~~~~~~~~~~~~---~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~ 145 (149)
.++.++..+. .... ..+.+..+++..++ ..... ..+|+|||||++|||||+.+|++|||||||+|||+.
T Consensus 97 ~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~--~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~ 174 (279)
T PRK13635 97 ATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREP--HRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPR 174 (279)
T ss_pred ccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCc--ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHH
Confidence 3455554331 1111 12223334443333 22333 345999999999999999999999999999999997
Q ss_pred CC
Q psy10767 146 LS 147 (149)
Q Consensus 146 ~~ 147 (149)
.+
T Consensus 175 ~~ 176 (279)
T PRK13635 175 GR 176 (279)
T ss_pred HH
Confidence 65
No 107
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=7.6e-37 Score=233.32 Aligned_cols=140 Identities=26% Similarity=0.223 Sum_probs=100.8
Q ss_pred ceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccC----CcceEEECCeec-------ceeeeeecCcccccCcccc
Q psy10767 5 SASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRL----DHGSISLSARTV-------RDIGYMPQVGLMRSGALLA 73 (149)
Q Consensus 5 ~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~----~~G~i~~~g~~~-------~~i~~~~q~~~~~~~~~~~ 73 (149)
+++|+||++++|++++|+||||||||||+++|+|+++| ++|+|+++|+++ +.++|++|++.. .+..
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~---~~~~ 77 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRT---AFNP 77 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchh---hcCc
Confidence 47899999999999999999999999999999999999 899999999764 369999998521 0112
Q ss_pred cCChhHHHhh----cccCc--hHHHHHHHhhhhHHH----HhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCC
Q psy10767 74 EDSPSYLLEY----YNCST--LEDVFLYLCEQDQIL----FSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLD 143 (149)
Q Consensus 74 ~~~~~~~~~~----~~~~~--~~~~~~~~~~~~~~~----~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD 143 (149)
..++.++..+ ..... ..+.+.++++..++. ........+|+|||||++||||++.+|+++||||||+|||
T Consensus 78 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD 157 (230)
T TIGR02770 78 LFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLD 157 (230)
T ss_pred ccCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccC
Confidence 2233332211 11111 122233333333321 1112233469999999999999999999999999999999
Q ss_pred cCCC
Q psy10767 144 PVLS 147 (149)
Q Consensus 144 ~~~~ 147 (149)
+..+
T Consensus 158 ~~~~ 161 (230)
T TIGR02770 158 VVNQ 161 (230)
T ss_pred HHHH
Confidence 8764
No 108
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-36 Score=233.72 Aligned_cols=139 Identities=32% Similarity=0.424 Sum_probs=103.5
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec----------ceeeeeecCcccccCcccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV----------RDIGYMPQVGLMRSGALLA 73 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~----------~~i~~~~q~~~~~~~~~~~ 73 (149)
.+++|+||++++|++++|+||||||||||+++|+|+++|++|+|+++|.++ +.++|++|++. ++.
T Consensus 17 ~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~-----~~~ 91 (241)
T PRK10895 17 RVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGYLPQEAS-----IFR 91 (241)
T ss_pred EEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeEEeccCCc-----ccc
Confidence 478999999999999999999999999999999999999999999999764 34899999843 333
Q ss_pred cCChhHHHhhcc-----cCc--hHHHHHHHhhhhHHHH-hhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcC
Q psy10767 74 EDSPSYLLEYYN-----CST--LEDVFLYLCEQDQILF-SLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPV 145 (149)
Q Consensus 74 ~~~~~~~~~~~~-----~~~--~~~~~~~~~~~~~~~~-~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~ 145 (149)
..++.++..+.. ... ....+..+++.+++.. .......+|+|||||++||||++.+|++|||||||++||+.
T Consensus 92 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~ 171 (241)
T PRK10895 92 RLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPI 171 (241)
T ss_pred cCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHH
Confidence 345555443321 011 1122333333333211 11222345999999999999999999999999999999997
Q ss_pred CC
Q psy10767 146 LS 147 (149)
Q Consensus 146 ~~ 147 (149)
.+
T Consensus 172 ~~ 173 (241)
T PRK10895 172 SV 173 (241)
T ss_pred HH
Confidence 65
No 109
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.2e-36 Score=229.10 Aligned_cols=139 Identities=29% Similarity=0.304 Sum_probs=103.0
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec------ceeeeeecCcccccCcccccCCh
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV------RDIGYMPQVGLMRSGALLAEDSP 77 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~------~~i~~~~q~~~~~~~~~~~~~~~ 77 (149)
.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+. +.++|++|... +....++
T Consensus 16 ~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~-----~~~~~tv 90 (207)
T PRK13539 16 VLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLGHRNA-----MKPALTV 90 (207)
T ss_pred EEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhcEEecCCCc-----CCCCCcH
Confidence 479999999999999999999999999999999999999999999999764 24788887632 2233455
Q ss_pred hHHHhhcc-c-CchHHHHHHHhhhhHHHH-hhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCCC
Q psy10767 78 SYLLEYYN-C-STLEDVFLYLCEQDQILF-SLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 78 ~~~~~~~~-~-~~~~~~~~~~~~~~~~~~-~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~~ 147 (149)
.++..+.. . ......+.++++.+++.. .......+|+|||||++||||++.+|+++||||||++||+..+
T Consensus 91 ~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~ 163 (207)
T PRK13539 91 AENLEFWAAFLGGEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAV 163 (207)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence 55443311 1 111222334444443311 1122234699999999999999999999999999999998765
No 110
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.8e-37 Score=241.25 Aligned_cols=140 Identities=26% Similarity=0.348 Sum_probs=104.5
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec-------------ceeeeeecCcccccCc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV-------------RDIGYMPQVGLMRSGA 70 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~-------------~~i~~~~q~~~~~~~~ 70 (149)
.+|+|+||+|.+||+++|+||||||||||+++|+|+.+|++|+|.++|+++ +.++|+||++.. .
T Consensus 21 ~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~---~ 97 (290)
T PRK13634 21 RALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEH---Q 97 (290)
T ss_pred cceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhhEEEEeeCchh---h
Confidence 589999999999999999999999999999999999999999999999764 248999998421 1
Q ss_pred ccccCChhHHHhhc----ccCc--hHHHHHHHhhhhHHH-H-hhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCC
Q psy10767 71 LLAEDSPSYLLEYY----NCST--LEDVFLYLCEQDQIL-F-SLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGL 142 (149)
Q Consensus 71 ~~~~~~~~~~~~~~----~~~~--~~~~~~~~~~~~~~~-~-~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gL 142 (149)
++ ..++.++..+. .... ..+.+..+++.+++. . .......+|+|||||++|||||+.+|++|||||||++|
T Consensus 98 l~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~~~P~llllDEPt~~L 176 (290)
T PRK13634 98 LF-EETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGL 176 (290)
T ss_pred hh-hhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccC
Confidence 11 23444444321 1111 122334444444431 1 12233456999999999999999999999999999999
Q ss_pred CcCCC
Q psy10767 143 DPVLS 147 (149)
Q Consensus 143 D~~~~ 147 (149)
|+..+
T Consensus 177 D~~~~ 181 (290)
T PRK13634 177 DPKGR 181 (290)
T ss_pred CHHHH
Confidence 99764
No 111
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.3e-37 Score=240.53 Aligned_cols=140 Identities=26% Similarity=0.342 Sum_probs=103.9
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec-------------ceeeeeecCcccccCc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV-------------RDIGYMPQVGLMRSGA 70 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~-------------~~i~~~~q~~~~~~~~ 70 (149)
.+++|+||+|.+||+++|+||||||||||+++|+|+++|++|+|+++|.++ +.++|++|++.. .
T Consensus 20 ~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~---~ 96 (288)
T PRK13643 20 RALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPES---Q 96 (288)
T ss_pred cceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHHHHhhEEEEecCcch---h
Confidence 589999999999999999999999999999999999999999999999764 248999998521 1
Q ss_pred ccccCChhHHHhhc----ccCc--hHHHHHHHhhhhHHH--HhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCC
Q psy10767 71 LLAEDSPSYLLEYY----NCST--LEDVFLYLCEQDQIL--FSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGL 142 (149)
Q Consensus 71 ~~~~~~~~~~~~~~----~~~~--~~~~~~~~~~~~~~~--~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gL 142 (149)
++ ..++.++..+. .... ....+.++++.+++. ........+|||||||++|||||+.+|+++||||||++|
T Consensus 97 l~-~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gL 175 (288)
T PRK13643 97 LF-EETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGL 175 (288)
T ss_pred cc-cchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCccCC
Confidence 12 12444444331 1111 122233444433331 112233456999999999999999999999999999999
Q ss_pred CcCCC
Q psy10767 143 DPVLS 147 (149)
Q Consensus 143 D~~~~ 147 (149)
|+..+
T Consensus 176 D~~~~ 180 (288)
T PRK13643 176 DPKAR 180 (288)
T ss_pred CHHHH
Confidence 99865
No 112
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=8.6e-37 Score=236.22 Aligned_cols=140 Identities=19% Similarity=0.179 Sum_probs=102.2
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccC----CcceEEECCeec-------ceeeeeecCcc-cccCcc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRL----DHGSISLSARTV-------RDIGYMPQVGL-MRSGAL 71 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~----~~G~i~~~g~~~-------~~i~~~~q~~~-~~~~~~ 71 (149)
++++|+||++.+||+++|+||||||||||+++|+|+++| ++|+|+++|.++ +.++|++|++. .+.
T Consensus 17 ~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~~v~q~~~~~~~--- 93 (254)
T PRK10418 17 PLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIATIMQNPRSAFN--- 93 (254)
T ss_pred ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceEEEEecCCccccC---
Confidence 578999999999999999999999999999999999999 999999999764 35999999853 111
Q ss_pred cccCChhHHHh----hcccCchHHHHHHHhhhhHHHH----hhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCC
Q psy10767 72 LAEDSPSYLLE----YYNCSTLEDVFLYLCEQDQILF----SLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLD 143 (149)
Q Consensus 72 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD 143 (149)
+..++..+.. .......++.+..+++.+++.. .......+|+|||||++|||||+.+|++|||||||++||
T Consensus 94 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD 172 (254)
T PRK10418 94 -PLHTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLD 172 (254)
T ss_pred -ccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccC
Confidence 1122222221 1111111223333444433311 112233469999999999999999999999999999999
Q ss_pred cCCC
Q psy10767 144 PVLS 147 (149)
Q Consensus 144 ~~~~ 147 (149)
+..+
T Consensus 173 ~~~~ 176 (254)
T PRK10418 173 VVAQ 176 (254)
T ss_pred HHHH
Confidence 8764
No 113
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=5.1e-37 Score=224.90 Aligned_cols=132 Identities=29% Similarity=0.377 Sum_probs=106.5
Q ss_pred ceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec-------ceeeeeecCcccccCcccccCChhHHH
Q psy10767 9 LNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV-------RDIGYMPQVGLMRSGALLAEDSPSYLL 81 (149)
Q Consensus 9 i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~-------~~i~~~~q~~~~~~~~~~~~~~~~~~~ 81 (149)
++++|..||++||+||||||||||+|+|+|+..|.+|+|+++|++. +-++++||+ +.++...++.+|.
T Consensus 18 fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQE-----nNLFaHLtV~qNi 92 (231)
T COG3840 18 FDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQE-----NNLFAHLTVAQNI 92 (231)
T ss_pred EEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhhhhc-----cccchhhhhhhhh
Confidence 5678899999999999999999999999999999999999999886 348899998 6667777777776
Q ss_pred hhc-----ccCc-hHHHHHHHhhhhHH---HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCCC
Q psy10767 82 EYY-----NCST-LEDVFLYLCEQDQI---LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 82 ~~~-----~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~~ 147 (149)
..- .... .++....+....++ ..+....+ ||||||||+|||+|+++-+|++||||+++|||..|
T Consensus 93 gLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~L--SGGqRQRvALARclvR~~PilLLDEPFsALdP~LR 165 (231)
T COG3840 93 GLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGEL--SGGQRQRVALARCLVREQPILLLDEPFSALDPALR 165 (231)
T ss_pred cccCCcccccCHHHHHHHHHHHHHhChhhHhhhCcccc--CchHHHHHHHHHHHhccCCeEEecCchhhcCHHHH
Confidence 542 1111 13344444444444 44555555 99999999999999999999999999999999876
No 114
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.8e-37 Score=237.31 Aligned_cols=139 Identities=24% Similarity=0.262 Sum_probs=103.6
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec---------ceeeeeecCcccccCccccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV---------RDIGYMPQVGLMRSGALLAE 74 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~---------~~i~~~~q~~~~~~~~~~~~ 74 (149)
.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++ +.++|++|+.. ++..
T Consensus 25 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~-----~~~~ 99 (265)
T PRK10575 25 TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYLPQQLP-----AAEG 99 (265)
T ss_pred EEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheEEeccCCC-----CCCC
Confidence 479999999999999999999999999999999999999999999999765 24899999732 2233
Q ss_pred CChhHHHhhccc---------Cc-hHHHHHHHhhhhHHHH-hhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCC
Q psy10767 75 DSPSYLLEYYNC---------ST-LEDVFLYLCEQDQILF-SLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLD 143 (149)
Q Consensus 75 ~~~~~~~~~~~~---------~~-~~~~~~~~~~~~~~~~-~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD 143 (149)
.++.++..+... .. ..+.+..+++..++.. .......+|||||||++|||||+.+|+++||||||++||
T Consensus 100 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD 179 (265)
T PRK10575 100 MTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALD 179 (265)
T ss_pred ccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence 445555433110 01 1222333334433311 111223469999999999999999999999999999999
Q ss_pred cCCC
Q psy10767 144 PVLS 147 (149)
Q Consensus 144 ~~~~ 147 (149)
+..+
T Consensus 180 ~~~~ 183 (265)
T PRK10575 180 IAHQ 183 (265)
T ss_pred HHHH
Confidence 9764
No 115
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=1.2e-36 Score=235.67 Aligned_cols=139 Identities=26% Similarity=0.259 Sum_probs=104.2
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec----------------------ceeeeee
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV----------------------RDIGYMP 61 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~----------------------~~i~~~~ 61 (149)
.+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|+++|.++ +.++|++
T Consensus 19 ~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~ 98 (257)
T PRK10619 19 EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMVF 98 (257)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccccccchHHHHHhhceEEEe
Confidence 478999999999999999999999999999999999999999999999754 2489999
Q ss_pred cCcccccCcccccCChhHHHhhc-----ccCc--hHHHHHHHhhhhHHHHh--hcCCCCCChhHHHHHHHHHHHhcCCCE
Q psy10767 62 QVGLMRSGALLAEDSPSYLLEYY-----NCST--LEDVFLYLCEQDQILFS--LVGSESAFGGQQRRVSFAVSLIHDPKI 132 (149)
Q Consensus 62 q~~~~~~~~~~~~~~~~~~~~~~-----~~~~--~~~~~~~~~~~~~~~~~--~~~~~~~sgGqkqrv~iaral~~~p~i 132 (149)
|++. ++...++.++..+. .... .......+++..++... ......+|+|||||++|||||+.+|++
T Consensus 99 q~~~-----l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~laral~~~p~l 173 (257)
T PRK10619 99 QHFN-----LWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEV 173 (257)
T ss_pred cCcc-----cCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 9843 33334555554321 1111 12233334444433111 122345699999999999999999999
Q ss_pred EEEcCCCCCCCcCCC
Q psy10767 133 LILDEPTVGLDPVLS 147 (149)
Q Consensus 133 lllDEPt~gLD~~~~ 147 (149)
+||||||++||+..+
T Consensus 174 lllDEPt~~LD~~~~ 188 (257)
T PRK10619 174 LLFDEPTSALDPELV 188 (257)
T ss_pred EEEeCCcccCCHHHH
Confidence 999999999999764
No 116
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-36 Score=235.10 Aligned_cols=139 Identities=28% Similarity=0.375 Sum_probs=103.5
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec---------ceeeeeecCcccccCccccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV---------RDIGYMPQVGLMRSGALLAE 74 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~---------~~i~~~~q~~~~~~~~~~~~ 74 (149)
.+++++||++++|++++|+|+||||||||+++|+|+++|++|+|.++|.++ +.++|+||+..+ ...
T Consensus 16 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~-----~~~ 90 (255)
T PRK11231 16 RILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLALLPQHHLT-----PEG 90 (255)
T ss_pred EEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEEecccCCC-----CCC
Confidence 479999999999999999999999999999999999999999999999764 248999998432 223
Q ss_pred CChhHHHhhc--------cc-Cc-hHHHHHHHhhhhHHH-HhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCC
Q psy10767 75 DSPSYLLEYY--------NC-ST-LEDVFLYLCEQDQIL-FSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLD 143 (149)
Q Consensus 75 ~~~~~~~~~~--------~~-~~-~~~~~~~~~~~~~~~-~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD 143 (149)
.++.++..+. .. .. ....+..+++.+++. ........+|+|||||++||||++.+|++|||||||+|||
T Consensus 91 ~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD 170 (255)
T PRK11231 91 ITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLD 170 (255)
T ss_pred ccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence 3444444321 00 01 122233333333331 1122233459999999999999999999999999999999
Q ss_pred cCCC
Q psy10767 144 PVLS 147 (149)
Q Consensus 144 ~~~~ 147 (149)
+..+
T Consensus 171 ~~~~ 174 (255)
T PRK11231 171 INHQ 174 (255)
T ss_pred HHHH
Confidence 9765
No 117
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-36 Score=235.02 Aligned_cols=139 Identities=26% Similarity=0.328 Sum_probs=103.8
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec---------ceeeeeecCcccccCccccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV---------RDIGYMPQVGLMRSGALLAE 74 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~---------~~i~~~~q~~~~~~~~~~~~ 74 (149)
.+++|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++ +.++|++|+.. +...
T Consensus 16 ~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~-----~~~~ 90 (258)
T PRK13548 16 TLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVLPQHSS-----LSFP 90 (258)
T ss_pred eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEEEccCCc-----CCCC
Confidence 479999999999999999999999999999999999999999999999764 34899999843 2233
Q ss_pred CChhHHHhhccc----C--chHHHHHHHhhhhHHHH-hhcCCCCCChhHHHHHHHHHHHh------cCCCEEEEcCCCCC
Q psy10767 75 DSPSYLLEYYNC----S--TLEDVFLYLCEQDQILF-SLVGSESAFGGQQRRVSFAVSLI------HDPKILILDEPTVG 141 (149)
Q Consensus 75 ~~~~~~~~~~~~----~--~~~~~~~~~~~~~~~~~-~~~~~~~~sgGqkqrv~iaral~------~~p~illlDEPt~g 141 (149)
.++.++..+... . ........+++..++.. .......+|+|||||++|||||+ .+|++|||||||++
T Consensus 91 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~ 170 (258)
T PRK13548 91 FTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSA 170 (258)
T ss_pred CCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCccc
Confidence 455555443211 0 11222333444433311 11223356999999999999999 59999999999999
Q ss_pred CCcCCC
Q psy10767 142 LDPVLS 147 (149)
Q Consensus 142 LD~~~~ 147 (149)
||+..+
T Consensus 171 LD~~~~ 176 (258)
T PRK13548 171 LDLAHQ 176 (258)
T ss_pred CCHHHH
Confidence 999764
No 118
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-36 Score=232.92 Aligned_cols=138 Identities=28% Similarity=0.399 Sum_probs=102.8
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec---------ceeeeeecCcccccCccccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV---------RDIGYMPQVGLMRSGALLAE 74 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~---------~~i~~~~q~~~~~~~~~~~~ 74 (149)
.+++|+||++.+|++++|+||||||||||+++|+|+++|++|+|.++|.++ +.++|++|++.++ .
T Consensus 17 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~-----~- 90 (241)
T PRK14250 17 EILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLF-----E- 90 (241)
T ss_pred eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEEEecCchhc-----h-
Confidence 478999999999999999999999999999999999999999999999764 3589999985332 2
Q ss_pred CChhHHHhhccc--CchHHHHHHHhhhhHHH--HhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCCC
Q psy10767 75 DSPSYLLEYYNC--STLEDVFLYLCEQDQIL--FSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 75 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~--~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~~ 147 (149)
.++.++..+... ......+..+++..++. ........+|+|||||++||||++.+|+++||||||++||+..+
T Consensus 91 ~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~ 167 (241)
T PRK14250 91 GTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTST 167 (241)
T ss_pred hhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence 244444432110 11112223333333321 11223345699999999999999999999999999999999754
No 119
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=1.5e-36 Score=234.39 Aligned_cols=139 Identities=27% Similarity=0.327 Sum_probs=102.9
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec----------------------ceeeeee
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV----------------------RDIGYMP 61 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~----------------------~~i~~~~ 61 (149)
.+++|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|.++ +.++|++
T Consensus 14 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~v~ 93 (252)
T TIGR03005 14 TVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVF 93 (252)
T ss_pred eEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccchhHHHHHhhCeEEEe
Confidence 478999999999999999999999999999999999999999999998754 2489999
Q ss_pred cCcccccCcccccCChhHHHhhc-----ccCc--hHHHHHHHhhhhHHHH-hhcCCCCCChhHHHHHHHHHHHhcCCCEE
Q psy10767 62 QVGLMRSGALLAEDSPSYLLEYY-----NCST--LEDVFLYLCEQDQILF-SLVGSESAFGGQQRRVSFAVSLIHDPKIL 133 (149)
Q Consensus 62 q~~~~~~~~~~~~~~~~~~~~~~-----~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~sgGqkqrv~iaral~~~p~il 133 (149)
|++. ++...++.++..+. .... ....+..+++.+++.. .......+|+|||||++|||||+.+|+++
T Consensus 94 q~~~-----~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~ll 168 (252)
T TIGR03005 94 QSFN-----LFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVM 168 (252)
T ss_pred cCcc-----cCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHHHHHHHcCCCEE
Confidence 9843 23334444444321 1111 1122333333333211 11122346999999999999999999999
Q ss_pred EEcCCCCCCCcCCC
Q psy10767 134 ILDEPTVGLDPVLS 147 (149)
Q Consensus 134 llDEPt~gLD~~~~ 147 (149)
||||||++||+..+
T Consensus 169 llDEP~~~LD~~~~ 182 (252)
T TIGR03005 169 LFDEVTSALDPELV 182 (252)
T ss_pred EEeCCcccCCHHHH
Confidence 99999999999764
No 120
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-36 Score=245.76 Aligned_cols=133 Identities=29% Similarity=0.399 Sum_probs=103.1
Q ss_pred cceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec-------------ceeeeeecCcccccCccccc
Q psy10767 8 SLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV-------------RDIGYMPQVGLMRSGALLAE 74 (149)
Q Consensus 8 ~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~-------------~~i~~~~q~~~~~~~~~~~~ 74 (149)
|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++ +.++|+||+. .+++.
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~-----~l~~~ 90 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDA-----RLFPH 90 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCCEEEEcCCc-----ccCCC
Confidence 89999999999999999999999999999999999999999998753 3589999984 34455
Q ss_pred CChhHHHhhcccCchHHHHHHHhhhhHH---HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCCC
Q psy10767 75 DSPSYLLEYYNCSTLEDVFLYLCEQDQI---LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~~ 147 (149)
.++.++..+.......+.+..+++.+++ .++.. ..+|||||||++|||||+.+|++|||||||++||+..+
T Consensus 91 ~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~--~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~ 164 (352)
T PRK11144 91 YKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYP--GSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRK 164 (352)
T ss_pred CcHHHHHHhhhhhhhHHHHHHHHHHcCCchhhhCCc--ccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHH
Confidence 5666665442111112333344444433 23333 34599999999999999999999999999999999765
No 121
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.3e-37 Score=239.58 Aligned_cols=140 Identities=26% Similarity=0.304 Sum_probs=102.4
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec-------------ceeeeeecCcccccCc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV-------------RDIGYMPQVGLMRSGA 70 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~-------------~~i~~~~q~~~~~~~~ 70 (149)
++++|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++ +.++|++|++.. .
T Consensus 21 ~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~---~ 97 (280)
T PRK13649 21 RALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPES---Q 97 (280)
T ss_pred ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHHHHhheEEEeeChhh---h
Confidence 589999999999999999999999999999999999999999999999754 248999998410 1
Q ss_pred ccccCChhHHHhhc----ccCc--hHHHHHHHhhhhHHH--HhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCC
Q psy10767 71 LLAEDSPSYLLEYY----NCST--LEDVFLYLCEQDQIL--FSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGL 142 (149)
Q Consensus 71 ~~~~~~~~~~~~~~----~~~~--~~~~~~~~~~~~~~~--~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gL 142 (149)
++ ..++.++..+. .... ....+..+++..++. ........+|+|||||++|||||+.+|++|||||||++|
T Consensus 98 ~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~L 176 (280)
T PRK13649 98 LF-EETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGL 176 (280)
T ss_pred hc-cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccC
Confidence 11 12444444321 1111 112223333333321 112223356999999999999999999999999999999
Q ss_pred CcCCC
Q psy10767 143 DPVLS 147 (149)
Q Consensus 143 D~~~~ 147 (149)
|+..+
T Consensus 177 D~~~~ 181 (280)
T PRK13649 177 DPKGR 181 (280)
T ss_pred CHHHH
Confidence 99765
No 122
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=9.7e-37 Score=225.44 Aligned_cols=117 Identities=27% Similarity=0.374 Sum_probs=94.1
Q ss_pred ceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec----------ceeeeeecCcccccCccccc
Q psy10767 5 SASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV----------RDIGYMPQVGLMRSGALLAE 74 (149)
Q Consensus 5 ~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~----------~~i~~~~q~~~~~~~~~~~~ 74 (149)
+++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++ +.++|++|++.. ..+...
T Consensus 15 ~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~--~~~~~~ 92 (182)
T cd03215 15 AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKR--EGLVLD 92 (182)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCeEEecCCccc--CcccCC
Confidence 68999999999999999999999999999999999999999999999764 248888886310 012222
Q ss_pred CChhHHHhhcccCchHHHHHHHhhhhHHHHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCCCC
Q psy10767 75 DSPSYLLEYYNCSTLEDVFLYLCEQDQILFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLSF 148 (149)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~~~ 148 (149)
.++.++..+.. . +|+|||||++||||++.+|+++||||||++||+..+.
T Consensus 93 ~t~~e~l~~~~-------------------~------LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~ 141 (182)
T cd03215 93 LSVAENIALSS-------------------L------LSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKA 141 (182)
T ss_pred CcHHHHHHHHh-------------------h------cCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHH
Confidence 33333322110 0 5999999999999999999999999999999998653
No 123
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=1.7e-36 Score=235.96 Aligned_cols=141 Identities=24% Similarity=0.306 Sum_probs=102.9
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec------------ceeeeeecCcccccCcc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV------------RDIGYMPQVGLMRSGAL 71 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~------------~~i~~~~q~~~~~~~~~ 71 (149)
++++|+||++++||+++|+||||||||||+++|+|+++|++|+|+++|.++ +.++|++|++.. .+
T Consensus 25 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~---~~ 101 (265)
T TIGR02769 25 PVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPS---AV 101 (265)
T ss_pred EEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHHHHHHhhceEEEecChhh---hc
Confidence 589999999999999999999999999999999999999999999999764 249999998421 11
Q ss_pred cccCChhHHHhh----c-ccCc--hHHHHHHHhhhhHHHH--hhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCC
Q psy10767 72 LAEDSPSYLLEY----Y-NCST--LEDVFLYLCEQDQILF--SLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGL 142 (149)
Q Consensus 72 ~~~~~~~~~~~~----~-~~~~--~~~~~~~~~~~~~~~~--~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gL 142 (149)
....++.++..+ . .... ..+.+..+++.+++.. .......+|+|||||++|||||+++|++|||||||++|
T Consensus 102 ~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~laral~~~p~illLDEPt~~L 181 (265)
T TIGR02769 102 NPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNL 181 (265)
T ss_pred CCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 222344443321 1 1111 1223333444433311 11223346999999999999999999999999999999
Q ss_pred CcCCC
Q psy10767 143 DPVLS 147 (149)
Q Consensus 143 D~~~~ 147 (149)
|+..+
T Consensus 182 D~~~~ 186 (265)
T TIGR02769 182 DMVLQ 186 (265)
T ss_pred CHHHH
Confidence 99754
No 124
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=1.3e-36 Score=243.72 Aligned_cols=139 Identities=24% Similarity=0.400 Sum_probs=104.6
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec------------ceeeeeecCcccccCcc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV------------RDIGYMPQVGLMRSGAL 71 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~------------~~i~~~~q~~~~~~~~~ 71 (149)
.+++|+||+|.+||++||+|+||||||||+++|+|+++|++|+|+++|.++ +.++|+||++. ..+
T Consensus 35 ~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~---~~l 111 (331)
T PRK15079 35 KAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPL---ASL 111 (331)
T ss_pred EEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCcCCHHHHHHHhCceEEEecCch---hhc
Confidence 479999999999999999999999999999999999999999999999875 35999999852 022
Q ss_pred cccCChhHHHhh----c--ccCc--hHHHHHHHhhhhHH----HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCC
Q psy10767 72 LAEDSPSYLLEY----Y--NCST--LEDVFLYLCEQDQI----LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPT 139 (149)
Q Consensus 72 ~~~~~~~~~~~~----~--~~~~--~~~~~~~~~~~~~~----~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt 139 (149)
.+..++.++..+ + .... ..+.+..+++.+++ .++.. ..|||||||||+|||||+.+|++||+||||
T Consensus 112 ~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p--~~LSgG~~QRv~iArAL~~~P~llilDEPt 189 (331)
T PRK15079 112 NPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYP--HEFSGGQCQRIGIARALILEPKLIICDEPV 189 (331)
T ss_pred CCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCc--ccCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 333444444322 1 1111 12223333444333 22233 345999999999999999999999999999
Q ss_pred CCCCcCCC
Q psy10767 140 VGLDPVLS 147 (149)
Q Consensus 140 ~gLD~~~~ 147 (149)
++||+..+
T Consensus 190 s~LD~~~~ 197 (331)
T PRK15079 190 SALDVSIQ 197 (331)
T ss_pred ccCCHHHH
Confidence 99998765
No 125
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-36 Score=235.51 Aligned_cols=139 Identities=26% Similarity=0.353 Sum_probs=103.6
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec---------ceeeeeecCcccccCccccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV---------RDIGYMPQVGLMRSGALLAE 74 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~---------~~i~~~~q~~~~~~~~~~~~ 74 (149)
.+++++||++.+||+++|+||||||||||+++|+|+++|++|+|.++|+++ +.++|+||++.+ +..
T Consensus 21 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~-----~~~ 95 (265)
T PRK10253 21 TVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGLLAQNATT-----PGD 95 (265)
T ss_pred EEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhheEEeeccCcC-----CCC
Confidence 479999999999999999999999999999999999999999999999765 248999998533 223
Q ss_pred CChhHHHhhcc--c-------Cc-hHHHHHHHhhhhHHHH-hhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCC
Q psy10767 75 DSPSYLLEYYN--C-------ST-LEDVFLYLCEQDQILF-SLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLD 143 (149)
Q Consensus 75 ~~~~~~~~~~~--~-------~~-~~~~~~~~~~~~~~~~-~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD 143 (149)
.++.++..+.. . .. ....+..+++.+++.. .......+|+|||||++||||++.+|+++||||||+|||
T Consensus 96 ~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD 175 (265)
T PRK10253 96 ITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLD 175 (265)
T ss_pred CcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhcCCCEEEEeCccccCC
Confidence 34444443210 0 00 1122333344333311 112233469999999999999999999999999999999
Q ss_pred cCCC
Q psy10767 144 PVLS 147 (149)
Q Consensus 144 ~~~~ 147 (149)
+..+
T Consensus 176 ~~~~ 179 (265)
T PRK10253 176 ISHQ 179 (265)
T ss_pred HHHH
Confidence 8765
No 126
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=2e-36 Score=229.84 Aligned_cols=137 Identities=28% Similarity=0.383 Sum_probs=103.9
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec-----ceeeeeecCcccccCcccccCChh
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV-----RDIGYMPQVGLMRSGALLAEDSPS 78 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~-----~~i~~~~q~~~~~~~~~~~~~~~~ 78 (149)
.+++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++ +.++|+||++. ++...++.
T Consensus 14 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q~~~-----~~~~~t~~ 88 (223)
T TIGR03740 14 TAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIESPP-----LYENLTAR 88 (223)
T ss_pred EEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEEEcCCCC-----ccccCCHH
Confidence 479999999999999999999999999999999999999999999999764 46899999743 23334455
Q ss_pred HHHhhcc--cCchHHHHHHHhhhhHH---HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCCC
Q psy10767 79 YLLEYYN--CSTLEDVFLYLCEQDQI---LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 79 ~~~~~~~--~~~~~~~~~~~~~~~~~---~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~~ 147 (149)
++..+.. ....+.....+++.+++ ...... .+|+|||||++||||++.+|+++||||||+|||+..+
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~~ 160 (223)
T TIGR03740 89 ENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKAK--QFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGI 160 (223)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhhhHh--hCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHH
Confidence 5543211 01112233333333333 233333 4599999999999999999999999999999999765
No 127
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-36 Score=236.95 Aligned_cols=138 Identities=24% Similarity=0.308 Sum_probs=103.7
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec---------ceeeeeecCcccccCccccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV---------RDIGYMPQVGLMRSGALLAE 74 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~---------~~i~~~~q~~~~~~~~~~~~ 74 (149)
++++++||++.+||+++|+||||||||||+++|+|+++|++|+|.++|.++ +.++|++|++.. .+..
T Consensus 23 ~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~----~~~~ 98 (271)
T PRK13632 23 NALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIGIIFQNPDN----QFIG 98 (271)
T ss_pred cceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceEEEEeCHHH----hcCc
Confidence 589999999999999999999999999999999999999999999999765 248999998521 1222
Q ss_pred CChhHHHhhc----ccCc--hHHHHHHHhhhhHH---HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcC
Q psy10767 75 DSPSYLLEYY----NCST--LEDVFLYLCEQDQI---LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPV 145 (149)
Q Consensus 75 ~~~~~~~~~~----~~~~--~~~~~~~~~~~~~~---~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~ 145 (149)
.++.++..+. .... ....+.++++..++ ..+.. ..+|+|||||++|||||+.+|++|||||||+|||+.
T Consensus 99 ~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~ 176 (271)
T PRK13632 99 ATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEP--QNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPK 176 (271)
T ss_pred ccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCc--ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHH
Confidence 3445544321 1111 11223333343333 22333 355999999999999999999999999999999997
Q ss_pred CC
Q psy10767 146 LS 147 (149)
Q Consensus 146 ~~ 147 (149)
.+
T Consensus 177 ~~ 178 (271)
T PRK13632 177 GK 178 (271)
T ss_pred HH
Confidence 64
No 128
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-36 Score=241.12 Aligned_cols=140 Identities=26% Similarity=0.312 Sum_probs=103.4
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec-----------------------------
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV----------------------------- 54 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~----------------------------- 54 (149)
.+++|+||+|.+||+++|+||||||||||+++|+|+++|++|+|+++|.+.
T Consensus 21 ~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (305)
T PRK13651 21 KALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKI 100 (305)
T ss_pred cceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccccccccccccccccccchH
Confidence 589999999999999999999999999999999999999999999986432
Q ss_pred ----ceeeeeecCcccccCcccccCChhHHHhhc----ccC--chHHHHHHHhhhhHHH--HhhcCCCCCChhHHHHHHH
Q psy10767 55 ----RDIGYMPQVGLMRSGALLAEDSPSYLLEYY----NCS--TLEDVFLYLCEQDQIL--FSLVGSESAFGGQQRRVSF 122 (149)
Q Consensus 55 ----~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~----~~~--~~~~~~~~~~~~~~~~--~~~~~~~~~sgGqkqrv~i 122 (149)
+.++|+||++.. .++ ..++.++..+. ... ...+.+..+++.+++. ........+|||||||++|
T Consensus 101 ~~~~~~ig~v~Q~~~~---~l~-~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqrval 176 (305)
T PRK13651 101 KEIRRRVGVVFQFAEY---QLF-EQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRSPFELSGGQKRRVAL 176 (305)
T ss_pred HHHHhceEEEeeCccc---ccc-cccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHH
Confidence 248999997421 111 23555554432 111 1122334444444431 1122233569999999999
Q ss_pred HHHHhcCCCEEEEcCCCCCCCcCCC
Q psy10767 123 AVSLIHDPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 123 aral~~~p~illlDEPt~gLD~~~~ 147 (149)
||||+.+|++|||||||++||+..+
T Consensus 177 A~aL~~~P~lLlLDEPt~~LD~~~~ 201 (305)
T PRK13651 177 AGILAMEPDFLVFDEPTAGLDPQGV 201 (305)
T ss_pred HHHHHhCCCEEEEeCCCCCCCHHHH
Confidence 9999999999999999999999765
No 129
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.2e-36 Score=229.86 Aligned_cols=138 Identities=28% Similarity=0.382 Sum_probs=101.4
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec---------ceeeeeecCcccccCccccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV---------RDIGYMPQVGLMRSGALLAE 74 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~---------~~i~~~~q~~~~~~~~~~~~ 74 (149)
++++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++ +.++|++|++.+ +.
T Consensus 16 ~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~-----~~- 89 (234)
T cd03251 16 PVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGLVSQDVFL-----FN- 89 (234)
T ss_pred cceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEEeCCCCee-----cc-
Confidence 579999999999999999999999999999999999999999999999764 248999998432 22
Q ss_pred CChhHHHhhcccCchHHHHHHHhhhh---HHHHh---------hcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCC
Q psy10767 75 DSPSYLLEYYNCSTLEDVFLYLCEQD---QILFS---------LVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGL 142 (149)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~---------~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gL 142 (149)
.++.++..+..............+.. ..... ......+|+|||||++|||||+.+|+++||||||++|
T Consensus 90 ~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~L 169 (234)
T cd03251 90 DTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSAL 169 (234)
T ss_pred ccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccC
Confidence 35555554432111111111111110 00110 1122356999999999999999999999999999999
Q ss_pred CcCCC
Q psy10767 143 DPVLS 147 (149)
Q Consensus 143 D~~~~ 147 (149)
|+..+
T Consensus 170 D~~~~ 174 (234)
T cd03251 170 DTESE 174 (234)
T ss_pred CHHHH
Confidence 99764
No 130
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-36 Score=237.82 Aligned_cols=140 Identities=23% Similarity=0.220 Sum_probs=103.1
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec----------ceeeeeecCcccccCcccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV----------RDIGYMPQVGLMRSGALLA 73 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~----------~~i~~~~q~~~~~~~~~~~ 73 (149)
.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++ +.++|++|++.. .+.
T Consensus 16 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~----~~~ 91 (274)
T PRK13644 16 PALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPET----QFV 91 (274)
T ss_pred ceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheEEEEEChhh----hcc
Confidence 479999999999999999999999999999999999999999999999765 248999998421 112
Q ss_pred cCChhHHHhhc----ccCc--hHHHHHHHhhhhHHHH-hhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCC
Q psy10767 74 EDSPSYLLEYY----NCST--LEDVFLYLCEQDQILF-SLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVL 146 (149)
Q Consensus 74 ~~~~~~~~~~~----~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~ 146 (149)
..++.++..+. .... ..+.+..+++.+++.. .......+|+|||||++|||||+.+|+++||||||+|||+..
T Consensus 92 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~ 171 (274)
T PRK13644 92 GRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDS 171 (274)
T ss_pred cchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHH
Confidence 23444444321 1111 1222333333333311 112233459999999999999999999999999999999976
Q ss_pred C
Q psy10767 147 S 147 (149)
Q Consensus 147 ~ 147 (149)
+
T Consensus 172 ~ 172 (274)
T PRK13644 172 G 172 (274)
T ss_pred H
Confidence 4
No 131
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=100.00 E-value=1.6e-36 Score=222.60 Aligned_cols=108 Identities=32% Similarity=0.505 Sum_probs=92.2
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec---------ceeeeeecCcccccCccccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV---------RDIGYMPQVGLMRSGALLAE 74 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~---------~~i~~~~q~~~~~~~~~~~~ 74 (149)
.+++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++ +.++|++|++. ++.
T Consensus 16 ~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~-----~~~- 89 (173)
T cd03246 16 PVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQDDE-----LFS- 89 (173)
T ss_pred cceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEEECCCCc-----ccc-
Confidence 479999999999999999999999999999999999999999999999765 34788888732 121
Q ss_pred CChhHHHhhcccCchHHHHHHHhhhhHHHHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCCC
Q psy10767 75 DSPSYLLEYYNCSTLEDVFLYLCEQDQILFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~~ 147 (149)
.++.++. +|+|||||++||||++.+|+++||||||++||+..+
T Consensus 90 ~tv~~~l------------------------------LS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~ 132 (173)
T cd03246 90 GSIAENI------------------------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGE 132 (173)
T ss_pred CcHHHHC------------------------------cCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHH
Confidence 1222211 499999999999999999999999999999999765
No 132
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=3.3e-36 Score=228.03 Aligned_cols=137 Identities=24% Similarity=0.359 Sum_probs=102.3
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec---------ceeeeeecCcccccCccccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV---------RDIGYMPQVGLMRSGALLAE 74 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~---------~~i~~~~q~~~~~~~~~~~~ 74 (149)
++++|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++ +.++|++|++.+ +.
T Consensus 18 ~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l-----~~- 91 (221)
T cd03244 18 PVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRISIIPQDPVL-----FS- 91 (221)
T ss_pred ccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEEEECCCCcc-----cc-
Confidence 589999999999999999999999999999999999999999999999764 358999998532 22
Q ss_pred CChhHHHhhcccCchHHHHHHHhhhhHH---HHh---------hcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCC
Q psy10767 75 DSPSYLLEYYNCSTLEDVFLYLCEQDQI---LFS---------LVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGL 142 (149)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~---------~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gL 142 (149)
.++.++........ ........+..++ ... ......+|+|||||++|||||+.+|+++||||||++|
T Consensus 92 ~tv~enl~~~~~~~-~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEP~~~L 170 (221)
T cd03244 92 GTIRSNLDPFGEYS-DEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASV 170 (221)
T ss_pred chHHHHhCcCCCCC-HHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccC
Confidence 24444443321111 1222222222221 110 0123456999999999999999999999999999999
Q ss_pred CcCCC
Q psy10767 143 DPVLS 147 (149)
Q Consensus 143 D~~~~ 147 (149)
|+..+
T Consensus 171 D~~~~ 175 (221)
T cd03244 171 DPETD 175 (221)
T ss_pred CHHHH
Confidence 99765
No 133
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=2.5e-36 Score=231.16 Aligned_cols=138 Identities=26% Similarity=0.390 Sum_probs=100.5
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec---------ceeeeeecCcccccCccccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV---------RDIGYMPQVGLMRSGALLAE 74 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~---------~~i~~~~q~~~~~~~~~~~~ 74 (149)
++++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++ +.++|++|++.+ +.
T Consensus 17 ~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~-----~~- 90 (238)
T cd03249 17 PILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIGLVSQEPVL-----FD- 90 (238)
T ss_pred cceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEEEECCchhh-----hh-
Confidence 489999999999999999999999999999999999999999999999764 249999998432 22
Q ss_pred CChhHHHhhcccCchHHHHHHHhhhh---HHHHhh---------cCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCC
Q psy10767 75 DSPSYLLEYYNCSTLEDVFLYLCEQD---QILFSL---------VGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGL 142 (149)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~---------~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gL 142 (149)
.++.++..+.......+......+.. ...... .....+|+|||||++||||++.+|+++||||||+||
T Consensus 91 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~gL 170 (238)
T cd03249 91 GTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSAL 170 (238)
T ss_pred hhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccC
Confidence 24444443321111111111111111 111111 112356999999999999999999999999999999
Q ss_pred CcCCC
Q psy10767 143 DPVLS 147 (149)
Q Consensus 143 D~~~~ 147 (149)
|+..+
T Consensus 171 D~~~~ 175 (238)
T cd03249 171 DAESE 175 (238)
T ss_pred CHHHH
Confidence 98765
No 134
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-36 Score=237.79 Aligned_cols=140 Identities=25% Similarity=0.305 Sum_probs=104.4
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec-----------ceeeeeecCcccccCccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV-----------RDIGYMPQVGLMRSGALL 72 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~-----------~~i~~~~q~~~~~~~~~~ 72 (149)
.+++++||++.+||+++|+||||||||||+++|+|+++|++|+|.++|.++ +.++|+||++.. ..
T Consensus 20 ~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~----~~ 95 (283)
T PRK13636 20 HALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDN----QL 95 (283)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhhEEEEecCcch----hh
Confidence 489999999999999999999999999999999999999999999999765 248999998521 11
Q ss_pred ccCChhHHHhhc----ccCc--hHHHHHHHhhhhHHH-HhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcC
Q psy10767 73 AEDSPSYLLEYY----NCST--LEDVFLYLCEQDQIL-FSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPV 145 (149)
Q Consensus 73 ~~~~~~~~~~~~----~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~ 145 (149)
...++.++..+. .... ..+.+..+++..++. ........+|+|||||++|||||+.+|++|||||||+|||+.
T Consensus 96 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~ 175 (283)
T PRK13636 96 FSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPM 175 (283)
T ss_pred ccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHH
Confidence 123444444321 1111 122334444444431 112223345999999999999999999999999999999997
Q ss_pred CC
Q psy10767 146 LS 147 (149)
Q Consensus 146 ~~ 147 (149)
.+
T Consensus 176 ~~ 177 (283)
T PRK13636 176 GV 177 (283)
T ss_pred HH
Confidence 65
No 135
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=2.3e-36 Score=235.56 Aligned_cols=141 Identities=21% Similarity=0.274 Sum_probs=102.7
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec---------ceeeeeecCcccccCccccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV---------RDIGYMPQVGLMRSGALLAE 74 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~---------~~i~~~~q~~~~~~~~~~~~ 74 (149)
++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++ +.++|++|++.. .+...
T Consensus 27 ~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~---~~~~~ 103 (267)
T PRK15112 27 EAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQRIRMIFQDPST---SLNPR 103 (267)
T ss_pred ceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchhhHhccEEEEecCchh---hcCcc
Confidence 589999999999999999999999999999999999999999999999764 248999998421 11222
Q ss_pred CChhHHHhh----c-ccCc--hHHHHHHHhhhhHHH-H-hhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcC
Q psy10767 75 DSPSYLLEY----Y-NCST--LEDVFLYLCEQDQIL-F-SLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPV 145 (149)
Q Consensus 75 ~~~~~~~~~----~-~~~~--~~~~~~~~~~~~~~~-~-~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~ 145 (149)
.++.++..+ . .... ..+.+..+++.+++. . .......+|+|||||++|||||+.+|+++||||||++||+.
T Consensus 104 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~ 183 (267)
T PRK15112 104 QRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMS 183 (267)
T ss_pred hhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHH
Confidence 233333221 1 1111 122233444444331 1 11122356999999999999999999999999999999997
Q ss_pred CC
Q psy10767 146 LS 147 (149)
Q Consensus 146 ~~ 147 (149)
.+
T Consensus 184 ~~ 185 (267)
T PRK15112 184 MR 185 (267)
T ss_pred HH
Confidence 65
No 136
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-36 Score=233.17 Aligned_cols=139 Identities=27% Similarity=0.331 Sum_probs=102.5
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccC-----CcceEEECCeec---------ceeeeeecCcccccC
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRL-----DHGSISLSARTV---------RDIGYMPQVGLMRSG 69 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~-----~~G~i~~~g~~~---------~~i~~~~q~~~~~~~ 69 (149)
++++++||++++||+++|+||||||||||+++|+|+++| ++|+|.++|.++ +.++|++|++.
T Consensus 17 ~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~---- 92 (250)
T PRK14247 17 EVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPN---- 92 (250)
T ss_pred eeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCc----
Confidence 478999999999999999999999999999999999974 699999999765 35899999843
Q ss_pred cccccCChhHHHhhc----cc-Cch---HHHHHHHhhhhHHH-----HhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEc
Q psy10767 70 ALLAEDSPSYLLEYY----NC-STL---EDVFLYLCEQDQIL-----FSLVGSESAFGGQQRRVSFAVSLIHDPKILILD 136 (149)
Q Consensus 70 ~~~~~~~~~~~~~~~----~~-~~~---~~~~~~~~~~~~~~-----~~~~~~~~~sgGqkqrv~iaral~~~p~illlD 136 (149)
++...++.++..+. .. ... .+....+++.+++. ........+|||||||++|||||+.+|+++|||
T Consensus 93 -~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLD 171 (250)
T PRK14247 93 -PIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLAD 171 (250)
T ss_pred -cCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 23334455554321 11 011 12223333333321 011222356999999999999999999999999
Q ss_pred CCCCCCCcCCC
Q psy10767 137 EPTVGLDPVLS 147 (149)
Q Consensus 137 EPt~gLD~~~~ 147 (149)
|||++||+..+
T Consensus 172 EP~~~LD~~~~ 182 (250)
T PRK14247 172 EPTANLDPENT 182 (250)
T ss_pred CCCccCCHHHH
Confidence 99999999865
No 137
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=1.6e-36 Score=246.81 Aligned_cols=137 Identities=23% Similarity=0.238 Sum_probs=105.8
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCe----ec-------------ceeeeeecCccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSAR----TV-------------RDIGYMPQVGLM 66 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~----~~-------------~~i~~~~q~~~~ 66 (149)
++++|+||++++||+++|+|+||||||||+|+|+|+++|++|+|+++|+ ++ +.++|+||+.
T Consensus 38 ~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~-- 115 (382)
T TIGR03415 38 VGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKF-- 115 (382)
T ss_pred EEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCC--
Confidence 5799999999999999999999999999999999999999999999985 21 3599999984
Q ss_pred ccCcccccCChhHHHhhc----ccCch--HHHHHHHhhhhHH---HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcC
Q psy10767 67 RSGALLAEDSPSYLLEYY----NCSTL--EDVFLYLCEQDQI---LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDE 137 (149)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~----~~~~~--~~~~~~~~~~~~~---~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDE 137 (149)
.+++..++.++..+. ..... ...+.++++.+++ .+... ..+|||||||++|||||+.+|+||||||
T Consensus 116 ---~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~--~~LSgGq~QRV~LARALa~~P~ILLlDE 190 (382)
T TIGR03415 116 ---ALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKP--GELSGGMQQRVGLARAFAMDADILLMDE 190 (382)
T ss_pred ---cCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCCh--hhCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 344455666665432 11111 2233444444443 22222 3459999999999999999999999999
Q ss_pred CCCCCCcCCC
Q psy10767 138 PTVGLDPVLS 147 (149)
Q Consensus 138 Pt~gLD~~~~ 147 (149)
||++||+..+
T Consensus 191 Pts~LD~~~r 200 (382)
T TIGR03415 191 PFSALDPLIR 200 (382)
T ss_pred CCccCCHHHH
Confidence 9999999765
No 138
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=3e-36 Score=231.08 Aligned_cols=139 Identities=19% Similarity=0.170 Sum_probs=100.0
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCc--cCCcceEEECCeec----------ceeeeeecCcccccCcc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRL--RLDHGSISLSARTV----------RDIGYMPQVGLMRSGAL 71 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~--~~~~G~i~~~g~~~----------~~i~~~~q~~~~~~~~~ 71 (149)
.+++|+||++++||+++|+||||||||||+++|+|+. +|++|+|.++|.++ ..++|++|++..
T Consensus 14 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~----- 88 (243)
T TIGR01978 14 EILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLFLAFQYPEE----- 88 (243)
T ss_pred EEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceEeeeccccc-----
Confidence 4789999999999999999999999999999999995 79999999999754 127899998533
Q ss_pred cccCChhHHHhhc----c-c-----Cch---HHHHHHHhhhhHHHHh--hcCCC-CCChhHHHHHHHHHHHhcCCCEEEE
Q psy10767 72 LAEDSPSYLLEYY----N-C-----STL---EDVFLYLCEQDQILFS--LVGSE-SAFGGQQRRVSFAVSLIHDPKILIL 135 (149)
Q Consensus 72 ~~~~~~~~~~~~~----~-~-----~~~---~~~~~~~~~~~~~~~~--~~~~~-~~sgGqkqrv~iaral~~~p~illl 135 (149)
+...++.++..+. . . ... .+.....++..++... ..... .+|+|||||++|||||+.+|+++||
T Consensus 89 ~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llll 168 (243)
T TIGR01978 89 IPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAIL 168 (243)
T ss_pred cCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHHhcCCCEEEe
Confidence 3333343333211 0 0 000 1222333333332111 11122 3699999999999999999999999
Q ss_pred cCCCCCCCcCCC
Q psy10767 136 DEPTVGLDPVLS 147 (149)
Q Consensus 136 DEPt~gLD~~~~ 147 (149)
||||++||+..+
T Consensus 169 DEPt~~LD~~~~ 180 (243)
T TIGR01978 169 DEIDSGLDIDAL 180 (243)
T ss_pred cCCcccCCHHHH
Confidence 999999999765
No 139
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=3e-36 Score=256.53 Aligned_cols=137 Identities=26% Similarity=0.348 Sum_probs=106.1
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeecc---------eeeeeecCcccccCccccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVR---------DIGYMPQVGLMRSGALLAE 74 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~~---------~i~~~~q~~~~~~~~~~~~ 74 (149)
++++|+||++++|+.+||+||||||||||+++|+|++ |++|+|.++|.+++ .|+|++|++.++.
T Consensus 364 ~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~------ 436 (588)
T PRK11174 364 TLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPH------ 436 (588)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCC------
Confidence 5799999999999999999999999999999999999 99999999998763 5999999954433
Q ss_pred CChhHHHhhcccCchHHHHHHHhhhhHH----------HHhhcCC--CCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCC
Q psy10767 75 DSPSYLLEYYNCSTLEDVFLYLCEQDQI----------LFSLVGS--ESAFGGQQRRVSFAVSLIHDPKILILDEPTVGL 142 (149)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~--~~~sgGqkqrv~iaral~~~p~illlDEPt~gL 142 (149)
.++.+|..+...+..++...++++..+. .+..++. ..+|||||||++||||++++|+|||||||||+|
T Consensus 437 ~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaL 516 (588)
T PRK11174 437 GTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASL 516 (588)
T ss_pred cCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCC
Confidence 3566666654222223333333332221 1222222 347999999999999999999999999999999
Q ss_pred CcCCC
Q psy10767 143 DPVLS 147 (149)
Q Consensus 143 D~~~~ 147 (149)
|+.+.
T Consensus 517 D~~te 521 (588)
T PRK11174 517 DAHSE 521 (588)
T ss_pred CHHHH
Confidence 98753
No 140
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3e-36 Score=236.08 Aligned_cols=140 Identities=21% Similarity=0.285 Sum_probs=103.3
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeecc---------eeeeeecCcccccCccccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVR---------DIGYMPQVGLMRSGALLAE 74 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~~---------~i~~~~q~~~~~~~~~~~~ 74 (149)
.+++|+||++.+||+++|+|+||||||||+++|+|+++|++|+|+++|.++. .++|++|++.. .+..
T Consensus 18 ~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~----~~~~ 93 (277)
T PRK13652 18 EALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGLVFQNPDD----QIFS 93 (277)
T ss_pred ceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEEEecCccc----cccc
Confidence 4799999999999999999999999999999999999999999999997652 48999998421 1112
Q ss_pred CChhHHHhhc----ccCc--hHHHHHHHhhhhHHH-HhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCCC
Q psy10767 75 DSPSYLLEYY----NCST--LEDVFLYLCEQDQIL-FSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 75 ~~~~~~~~~~----~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~~ 147 (149)
.++.++..+. .... ..+.+..+++..++. ........+|+|||||++|||||+.+|++|||||||+|||+..+
T Consensus 94 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~ 173 (277)
T PRK13652 94 PTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGV 173 (277)
T ss_pred ccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHH
Confidence 3444444321 1111 112233344443331 11122335699999999999999999999999999999998764
No 141
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=100.00 E-value=3e-36 Score=220.14 Aligned_cols=113 Identities=29% Similarity=0.405 Sum_probs=95.2
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeecceeeeeecCcccccCcccccCChhHHHhh
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAEDSPSYLLEY 83 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~ 83 (149)
.+++++||++.+||+++|+||||||||||+++|+|+++|++|+|.+++. +.++|++|++.+ . ..++.++..+
T Consensus 15 ~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~--~~i~~~~q~~~~-----~-~~tv~~nl~~ 86 (166)
T cd03223 15 VLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG--EDLLFLPQRPYL-----P-LGTLREQLIY 86 (166)
T ss_pred eeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC--ceEEEECCCCcc-----c-cccHHHHhhc
Confidence 5799999999999999999999999999999999999999999999875 579999998421 1 2344443321
Q ss_pred cccCchHHHHHHHhhhhHHHHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCCC
Q psy10767 84 YNCSTLEDVFLYLCEQDQILFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~~ 147 (149)
. ....+|+|||||++||||++.+|+++||||||++||+..+
T Consensus 87 ~-----------------------~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~ 127 (166)
T cd03223 87 P-----------------------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESE 127 (166)
T ss_pred c-----------------------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHH
Confidence 1 1234599999999999999999999999999999999764
No 142
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.4e-36 Score=229.26 Aligned_cols=134 Identities=29% Similarity=0.393 Sum_probs=102.0
Q ss_pred ecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec-------ceeeeeecCcccccCcccccCChhH
Q psy10767 7 SSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV-------RDIGYMPQVGLMRSGALLAEDSPSY 79 (149)
Q Consensus 7 ~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~-------~~i~~~~q~~~~~~~~~~~~~~~~~ 79 (149)
.++||++.+|++++|+||||||||||+++|+|+++|++|+|.++|.++ +.++|+||++. ++...++.+
T Consensus 16 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~-----~~~~~tv~e 90 (232)
T PRK10771 16 MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQENN-----LFSHLTVAQ 90 (232)
T ss_pred ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEEecccc-----cccCCcHHH
Confidence 389999999999999999999999999999999999999999999765 35899999843 333345555
Q ss_pred HHhhcc---c--C-chHHHHHHHhhhhHH---HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCCC
Q psy10767 80 LLEYYN---C--S-TLEDVFLYLCEQDQI---LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 80 ~~~~~~---~--~-~~~~~~~~~~~~~~~---~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~~ 147 (149)
+..+.. . . .....+..+++.+++ .++.. ..+|+|||||++||||++.+|+++||||||+|||+..+
T Consensus 91 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~ 165 (232)
T PRK10771 91 NIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLP--GQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALR 165 (232)
T ss_pred HHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCc--ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence 543311 0 1 112223344444433 22333 34599999999999999999999999999999999764
No 143
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=4.4e-36 Score=225.16 Aligned_cols=133 Identities=23% Similarity=0.334 Sum_probs=99.4
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeecceeeeeecCcccccCcccccCChhHHHhh
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAEDSPSYLLEY 83 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~ 83 (149)
++++++||++++|++++|+||||||||||+++|+|+++|++|+|.++| .++|++|++.+ + ..++.++..+
T Consensus 19 ~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g----~i~~~~q~~~l-----~-~~t~~enl~~ 88 (204)
T cd03250 19 FTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG----SIAYVSQEPWI-----Q-NGTIRENILF 88 (204)
T ss_pred ceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC----EEEEEecCchh-----c-cCcHHHHhcc
Confidence 589999999999999999999999999999999999999999999998 69999998543 2 2355555543
Q ss_pred cccCchHHHHHHHhhhh---HHHHhh---------cCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCCC
Q psy10767 84 YNCSTLEDVFLYLCEQD---QILFSL---------VGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 84 ~~~~~~~~~~~~~~~~~---~~~~~~---------~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~~ 147 (149)
..... .+......+.. ...... .....+|+|||||++||||++.+|+++||||||++||+..+
T Consensus 89 ~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~ 163 (204)
T cd03250 89 GKPFD-EERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVG 163 (204)
T ss_pred CCCcC-HHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHH
Confidence 21111 11111111111 111110 11235699999999999999999999999999999999754
No 144
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=3.1e-36 Score=227.84 Aligned_cols=137 Identities=23% Similarity=0.237 Sum_probs=102.9
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeecc------eeeeeecCcccccCcccccCCh
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVR------DIGYMPQVGLMRSGALLAEDSP 77 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~~------~i~~~~q~~~~~~~~~~~~~~~ 77 (149)
.+++++||++++||+++|+|+||||||||+++|+|+++|++|+|.++|+++. .++|++|++. ++...++
T Consensus 25 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~~~q~~~-----~~~~~t~ 99 (214)
T PRK13543 25 PVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYLGHLPG-----LKADLST 99 (214)
T ss_pred eeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceEEeecCcc-----cccCCcH
Confidence 4799999999999999999999999999999999999999999999997652 4899999743 2333345
Q ss_pred hHHHhhc-c--cCchHHHHHHHhhhhHH---HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCCC
Q psy10767 78 SYLLEYY-N--CSTLEDVFLYLCEQDQI---LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 78 ~~~~~~~-~--~~~~~~~~~~~~~~~~~---~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~~ 147 (149)
.++..+. . ....++.....++.+++ ..... ..+|+|||||++|||+++.+|+++||||||++||+..+
T Consensus 100 ~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~ 173 (214)
T PRK13543 100 LENLHFLCGLHGRRAKQMPGSALAIVGLAGYEDTLV--RQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGI 173 (214)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHcCChhhccCCh--hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence 4444321 1 01112222333333332 12222 34599999999999999999999999999999999765
No 145
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.8e-36 Score=227.01 Aligned_cols=134 Identities=28% Similarity=0.332 Sum_probs=99.7
Q ss_pred cceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec-------------ceeeeeecCcccccCccccc
Q psy10767 8 SLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV-------------RDIGYMPQVGLMRSGALLAE 74 (149)
Q Consensus 8 ~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~-------------~~i~~~~q~~~~~~~~~~~~ 74 (149)
|+||++++ |+++|+||||||||||+++|+|+++|++|+|.++|.++ +.++|++|++. ++..
T Consensus 16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~-----~~~~ 89 (214)
T cd03297 16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYA-----LFPH 89 (214)
T ss_pred CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEEEEecCCc-----cCCC
Confidence 99999999 99999999999999999999999999999999998753 25899999843 3333
Q ss_pred CChhHHHhhcc-c-C--chHHHHHHHhhhhHHHH-hhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCCC
Q psy10767 75 DSPSYLLEYYN-C-S--TLEDVFLYLCEQDQILF-SLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 75 ~~~~~~~~~~~-~-~--~~~~~~~~~~~~~~~~~-~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~~ 147 (149)
.++.++..+.. . . ..++.+..+++.+++.. .......+|+|||||++||||++.+|+++||||||+|||+..+
T Consensus 90 ~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~ 167 (214)
T cd03297 90 LNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALR 167 (214)
T ss_pred CCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence 45555443221 1 1 11222333444333311 1122345699999999999999999999999999999998764
No 146
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.8e-36 Score=232.98 Aligned_cols=139 Identities=24% Similarity=0.324 Sum_probs=101.9
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccC-----CcceEEECCeec-----------ceeeeeecCcccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRL-----DHGSISLSARTV-----------RDIGYMPQVGLMR 67 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~-----~~G~i~~~g~~~-----------~~i~~~~q~~~~~ 67 (149)
.+++++||++.+||+++|+||||||||||+++|+|+++| ++|+|.++|.++ +.++|++|+..
T Consensus 18 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~~~-- 95 (258)
T PRK14241 18 HAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPN-- 95 (258)
T ss_pred eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhcceEEEccccc--
Confidence 478999999999999999999999999999999999974 699999999764 24899999743
Q ss_pred cCcccccCChhHHHhhc----cc-Cc--hHHHHHHHhhhhHH-----HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEE
Q psy10767 68 SGALLAEDSPSYLLEYY----NC-ST--LEDVFLYLCEQDQI-----LFSLVGSESAFGGQQRRVSFAVSLIHDPKILIL 135 (149)
Q Consensus 68 ~~~~~~~~~~~~~~~~~----~~-~~--~~~~~~~~~~~~~~-----~~~~~~~~~~sgGqkqrv~iaral~~~p~illl 135 (149)
++...++.++..+. .. .. ..+.+..+++..++ .........+|+|||||++||||++.+|+++||
T Consensus 96 ---~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llll 172 (258)
T PRK14241 96 ---PFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLM 172 (258)
T ss_pred ---cCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 33344555554321 11 11 11222333333321 011122335699999999999999999999999
Q ss_pred cCCCCCCCcCCC
Q psy10767 136 DEPTVGLDPVLS 147 (149)
Q Consensus 136 DEPt~gLD~~~~ 147 (149)
||||+|||+..+
T Consensus 173 DEPt~~LD~~~~ 184 (258)
T PRK14241 173 DEPCSALDPIST 184 (258)
T ss_pred cCCCccCCHHHH
Confidence 999999998754
No 147
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=100.00 E-value=3.6e-36 Score=228.44 Aligned_cols=139 Identities=27% Similarity=0.315 Sum_probs=101.9
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEEC--Ce--ec-------------ceeeeeecCccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLS--AR--TV-------------RDIGYMPQVGLM 66 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~--g~--~~-------------~~i~~~~q~~~~ 66 (149)
.+++|+||++.+||+++|+||||||||||+++|+|+++|++|+|.++ |. ++ +.++|++|++.
T Consensus 22 ~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~- 100 (224)
T TIGR02324 22 PVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFLR- 100 (224)
T ss_pred EEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCHHHHHHHHhcceEEEecccc-
Confidence 58999999999999999999999999999999999999999999997 42 21 25899999843
Q ss_pred ccCcccccCChhHHHhh----cccCc--hHHHHHHHhhhhHHHH--hhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCC
Q psy10767 67 RSGALLAEDSPSYLLEY----YNCST--LEDVFLYLCEQDQILF--SLVGSESAFGGQQRRVSFAVSLIHDPKILILDEP 138 (149)
Q Consensus 67 ~~~~~~~~~~~~~~~~~----~~~~~--~~~~~~~~~~~~~~~~--~~~~~~~~sgGqkqrv~iaral~~~p~illlDEP 138 (149)
+....++.++..+ ..... ..+.+..+++.+++.. .......+|+|||||++|||||+.+|+++|||||
T Consensus 101 ----~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP 176 (224)
T TIGR02324 101 ----VIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEP 176 (224)
T ss_pred ----cCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 2333344444322 11111 1222333334333311 1123345699999999999999999999999999
Q ss_pred CCCCCcCCC
Q psy10767 139 TVGLDPVLS 147 (149)
Q Consensus 139 t~gLD~~~~ 147 (149)
|++||+..+
T Consensus 177 t~~LD~~~~ 185 (224)
T TIGR02324 177 TASLDAANR 185 (224)
T ss_pred cccCCHHHH
Confidence 999998764
No 148
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=2.6e-36 Score=243.84 Aligned_cols=133 Identities=32% Similarity=0.418 Sum_probs=101.8
Q ss_pred cceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec-------------ceeeeeecCcccccCccccc
Q psy10767 8 SLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV-------------RDIGYMPQVGLMRSGALLAE 74 (149)
Q Consensus 8 ~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~-------------~~i~~~~q~~~~~~~~~~~~ 74 (149)
++||++++||+++|+||||||||||+|+|+|+++|++|+|.++|.++ +.++|++|++ .+++.
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~-----~l~~~ 89 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEA-----RLFPH 89 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEEecCC-----ccCCC
Confidence 89999999999999999999999999999999999999999999764 2489999984 33444
Q ss_pred CChhHHHhhcc--cC--chHHHHHHHhhhhHH---HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCCC
Q psy10767 75 DSPSYLLEYYN--CS--TLEDVFLYLCEQDQI---LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 75 ~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~---~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~~ 147 (149)
.++.++..+.. .. .....+..+++.+++ .++.. ..+|||||||++|||||+.+|++|||||||++||+..+
T Consensus 90 ~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~--~~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~ 167 (354)
T TIGR02142 90 LSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGRLP--GRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRK 167 (354)
T ss_pred CcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhHhcCCh--hhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHH
Confidence 55666554321 11 112223334444333 22222 34599999999999999999999999999999999765
No 149
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-36 Score=232.85 Aligned_cols=139 Identities=27% Similarity=0.375 Sum_probs=102.0
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccC-----CcceEEECCeec-----------ceeeeeecCcccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRL-----DHGSISLSARTV-----------RDIGYMPQVGLMR 67 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~-----~~G~i~~~g~~~-----------~~i~~~~q~~~~~ 67 (149)
++++|+||++.+||+++|+||||||||||+++|+|+++| ++|+|+++|+++ +.++|++|++.
T Consensus 18 ~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~-- 95 (253)
T PRK14267 18 HVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPN-- 95 (253)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHhhceeEEecCCc--
Confidence 579999999999999999999999999999999999987 499999999764 24899999843
Q ss_pred cCcccccCChhHHHhhc----cc-Cch---HHHHHHHhhhhHHH-----HhhcCCCCCChhHHHHHHHHHHHhcCCCEEE
Q psy10767 68 SGALLAEDSPSYLLEYY----NC-STL---EDVFLYLCEQDQIL-----FSLVGSESAFGGQQRRVSFAVSLIHDPKILI 134 (149)
Q Consensus 68 ~~~~~~~~~~~~~~~~~----~~-~~~---~~~~~~~~~~~~~~-----~~~~~~~~~sgGqkqrv~iaral~~~p~ill 134 (149)
++...++.++..+. .. ... ...+..+++..++. ........+|+|||||++||||++.+|+++|
T Consensus 96 ---~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lll 172 (253)
T PRK14267 96 ---PFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILL 172 (253)
T ss_pred ---cCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 33334455544321 11 011 12223333332210 1111233469999999999999999999999
Q ss_pred EcCCCCCCCcCCC
Q psy10767 135 LDEPTVGLDPVLS 147 (149)
Q Consensus 135 lDEPt~gLD~~~~ 147 (149)
|||||++||+..+
T Consensus 173 lDEP~~~LD~~~~ 185 (253)
T PRK14267 173 MDEPTANIDPVGT 185 (253)
T ss_pred EcCCCccCCHHHH
Confidence 9999999999764
No 150
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.3e-36 Score=226.95 Aligned_cols=124 Identities=23% Similarity=0.299 Sum_probs=99.1
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCcc---CCcceEEECCeec--------ceeeeeecCcccccCccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLR---LDHGSISLSARTV--------RDIGYMPQVGLMRSGALL 72 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~---~~~G~i~~~g~~~--------~~i~~~~q~~~~~~~~~~ 72 (149)
.+++++||++++||+++|+||||||||||+++|+|+++ |++|+|.++|.++ +.++|++|++ .++
T Consensus 21 ~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~~~i~~~~q~~-----~~~ 95 (202)
T cd03233 21 PILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEED-----VHF 95 (202)
T ss_pred eeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhcceEEEEeccc-----ccC
Confidence 47899999999999999999999999999999999999 8999999999765 2489999973 333
Q ss_pred ccCChhHHHhhcccCchHHHHHHHhhhhHHHHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCCCC
Q psy10767 73 AEDSPSYLLEYYNCSTLEDVFLYLCEQDQILFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLSF 148 (149)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~~~ 148 (149)
...++.++..+.... . ..... ..+|+|||||++|||||+.+|+++||||||++||+..+.
T Consensus 96 ~~~tv~~~l~~~~~~--~------------~~~~~--~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~ 155 (202)
T cd03233 96 PTLTVRETLDFALRC--K------------GNEFV--RGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTAL 155 (202)
T ss_pred CCCcHHHHHhhhhhh--c------------cccch--hhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHH
Confidence 344555554332100 0 12222 245999999999999999999999999999999998653
No 151
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.2e-36 Score=228.97 Aligned_cols=138 Identities=25% Similarity=0.418 Sum_probs=100.9
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec---------ceeeeeecCcccccCccccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV---------RDIGYMPQVGLMRSGALLAE 74 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~---------~~i~~~~q~~~~~~~~~~~~ 74 (149)
.+++++||++.+|++++|+||||||||||+++|+|+.+|++|+|.++|.++ +.++|++|++.+ + .
T Consensus 15 ~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~~~~-----~-~ 88 (236)
T cd03253 15 PVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVVPQDTVL-----F-N 88 (236)
T ss_pred ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEEECCCChh-----h-c
Confidence 479999999999999999999999999999999999999999999999765 248999998533 2 2
Q ss_pred CChhHHHhhcccCchHHHHHHHhhhh---HHHHh---------hcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCC
Q psy10767 75 DSPSYLLEYYNCSTLEDVFLYLCEQD---QILFS---------LVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGL 142 (149)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~---------~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gL 142 (149)
.++.++..+................. ..... ......+|+|||||++|||||+.+|+++||||||+||
T Consensus 89 ~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~llllDEP~~~L 168 (236)
T cd03253 89 DTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSAL 168 (236)
T ss_pred chHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 34555554321111111111111111 11111 0112356999999999999999999999999999999
Q ss_pred CcCCC
Q psy10767 143 DPVLS 147 (149)
Q Consensus 143 D~~~~ 147 (149)
|+..+
T Consensus 169 D~~~~ 173 (236)
T cd03253 169 DTHTE 173 (236)
T ss_pred CHHHH
Confidence 99764
No 152
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.9e-36 Score=235.07 Aligned_cols=140 Identities=21% Similarity=0.260 Sum_probs=101.9
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec---------ceeeeeecCcccccCccccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV---------RDIGYMPQVGLMRSGALLAE 74 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~---------~~i~~~~q~~~~~~~~~~~~ 74 (149)
++++|+||++++||+++|+||||||||||+++|+|+++|++|+|+++|.++ +.++|++|++.. .+..
T Consensus 23 ~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~----~~~~ 98 (269)
T PRK13648 23 FTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIGIVFQNPDN----QFVG 98 (269)
T ss_pred cceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheeEEEeChHH----hccc
Confidence 479999999999999999999999999999999999999999999999765 248999998521 1122
Q ss_pred CChhHHHhhc----ccCc--hHHHHHHHhhhhHHHH-hhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCCC
Q psy10767 75 DSPSYLLEYY----NCST--LEDVFLYLCEQDQILF-SLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 75 ~~~~~~~~~~----~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~~ 147 (149)
.++.++..+. .... ..+.+..+++.+++.. .......+|+|||||++||||++.+|+++||||||++||+..+
T Consensus 99 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~ 178 (269)
T PRK13648 99 SIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDAR 178 (269)
T ss_pred ccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHH
Confidence 2333332221 1111 1122333333333211 1122334699999999999999999999999999999999765
No 153
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.4e-36 Score=232.41 Aligned_cols=138 Identities=25% Similarity=0.375 Sum_probs=100.6
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCcc-----CCcceEEECCeec-----------ceeeeeecCcccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLR-----LDHGSISLSARTV-----------RDIGYMPQVGLMR 67 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~-----~~~G~i~~~g~~~-----------~~i~~~~q~~~~~ 67 (149)
.+++++||++.+||+++|+||||||||||+++|+|+.. |++|+|.++|+++ +.++|++|++.+
T Consensus 20 ~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~- 98 (253)
T PRK14242 20 QALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPNP- 98 (253)
T ss_pred eeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHhhcEEEEecCCCC-
Confidence 47999999999999999999999999999999999964 5899999999764 248999998432
Q ss_pred cCcccccCChhHHHhhc----ccCc---hHHHHHHHhhhhHHH---H--hhcCCCCCChhHHHHHHHHHHHhcCCCEEEE
Q psy10767 68 SGALLAEDSPSYLLEYY----NCST---LEDVFLYLCEQDQIL---F--SLVGSESAFGGQQRRVSFAVSLIHDPKILIL 135 (149)
Q Consensus 68 ~~~~~~~~~~~~~~~~~----~~~~---~~~~~~~~~~~~~~~---~--~~~~~~~~sgGqkqrv~iaral~~~p~illl 135 (149)
+. .++.++..+. .... ..+....+++..++. . .......+|||||||++|||||+.+|++|||
T Consensus 99 ----~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~llll 173 (253)
T PRK14242 99 ----FP-KSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLM 173 (253)
T ss_pred ----Cc-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 22 2444444321 1111 122223333332221 0 1112335699999999999999999999999
Q ss_pred cCCCCCCCcCCC
Q psy10767 136 DEPTVGLDPVLS 147 (149)
Q Consensus 136 DEPt~gLD~~~~ 147 (149)
||||+|||+..+
T Consensus 174 DEPt~~LD~~~~ 185 (253)
T PRK14242 174 DEPASALDPIAT 185 (253)
T ss_pred eCCcccCCHHHH
Confidence 999999998764
No 154
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=5.5e-36 Score=231.83 Aligned_cols=139 Identities=25% Similarity=0.335 Sum_probs=103.0
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec---------ceeeeeecCcccccCccccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV---------RDIGYMPQVGLMRSGALLAE 74 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~---------~~i~~~~q~~~~~~~~~~~~ 74 (149)
.+++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++ +.++|++|+.. ....
T Consensus 15 ~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~-----~~~~ 89 (256)
T TIGR03873 15 LIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALVEQDSD-----TAVP 89 (256)
T ss_pred EEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEecccCc-----cCCC
Confidence 479999999999999999999999999999999999999999999999765 24899999842 2223
Q ss_pred CChhHHHhhcc--------cCc--hHHHHHHHhhhhHHHH-hhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCC
Q psy10767 75 DSPSYLLEYYN--------CST--LEDVFLYLCEQDQILF-SLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLD 143 (149)
Q Consensus 75 ~~~~~~~~~~~--------~~~--~~~~~~~~~~~~~~~~-~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD 143 (149)
.++.++..+.. ... ..+.+..+++..++.. .......+|+|||||++||||++.+|+++||||||+|||
T Consensus 90 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD 169 (256)
T TIGR03873 90 LTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLD 169 (256)
T ss_pred CCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCccccCC
Confidence 34444443310 000 1122333333333211 112233469999999999999999999999999999999
Q ss_pred cCCC
Q psy10767 144 PVLS 147 (149)
Q Consensus 144 ~~~~ 147 (149)
+..+
T Consensus 170 ~~~~ 173 (256)
T TIGR03873 170 VRAQ 173 (256)
T ss_pred HHHH
Confidence 9765
No 155
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=4.4e-36 Score=232.62 Aligned_cols=141 Identities=25% Similarity=0.319 Sum_probs=100.8
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCee-----c-------------ceeeeeecCcc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSART-----V-------------RDIGYMPQVGL 65 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~-----~-------------~~i~~~~q~~~ 65 (149)
.+++++||++.+||+++|+||||||||||+++|+|+++|++|+|.++|.+ + +.++|++|++.
T Consensus 20 ~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~q~~~ 99 (258)
T PRK11701 20 KGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQHPR 99 (258)
T ss_pred eeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHHHHHhhcceEEEeeCcc
Confidence 47899999999999999999999999999999999999999999999976 3 14899999852
Q ss_pred cccCcccccCChhHHHh----hcccC---chHHHHHHHhhhhHHH--HhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEc
Q psy10767 66 MRSGALLAEDSPSYLLE----YYNCS---TLEDVFLYLCEQDQIL--FSLVGSESAFGGQQRRVSFAVSLIHDPKILILD 136 (149)
Q Consensus 66 ~~~~~~~~~~~~~~~~~----~~~~~---~~~~~~~~~~~~~~~~--~~~~~~~~~sgGqkqrv~iaral~~~p~illlD 136 (149)
.. +....+..++.. ..... .....+.++++.+++. ........+|+|||||++|||||+.+|++||||
T Consensus 100 ~~---~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~laral~~~p~llllD 176 (258)
T PRK11701 100 DG---LRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIARNLVTHPRLVFMD 176 (258)
T ss_pred cc---cCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 10 111112222211 11111 1122233333333321 111223456999999999999999999999999
Q ss_pred CCCCCCCcCCC
Q psy10767 137 EPTVGLDPVLS 147 (149)
Q Consensus 137 EPt~gLD~~~~ 147 (149)
|||++||+..+
T Consensus 177 EPt~~LD~~~~ 187 (258)
T PRK11701 177 EPTGGLDVSVQ 187 (258)
T ss_pred CCcccCCHHHH
Confidence 99999998764
No 156
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=3.2e-36 Score=230.90 Aligned_cols=138 Identities=28% Similarity=0.349 Sum_probs=101.5
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec--------ceeeeeecCcccccCcccccC
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV--------RDIGYMPQVGLMRSGALLAED 75 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~--------~~i~~~~q~~~~~~~~~~~~~ 75 (149)
++++|+||++.+||+++|+||||||||||+++|+|+++|++|+|.++|.+. +.++|++|.. ..++...
T Consensus 35 ~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~----~~~~~~~ 110 (236)
T cd03267 35 EALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQK----TQLWWDL 110 (236)
T ss_pred eeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCc----cccCCCC
Confidence 489999999999999999999999999999999999999999999998753 2588987432 2223334
Q ss_pred ChhHHHhhc----ccCc--hHHHHHHHhhhhHH---HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCC
Q psy10767 76 SPSYLLEYY----NCST--LEDVFLYLCEQDQI---LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVL 146 (149)
Q Consensus 76 ~~~~~~~~~----~~~~--~~~~~~~~~~~~~~---~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~ 146 (149)
++.++..+. .... ..+....+++..++ ..... ..+|+|||||++|||||+.+|+++||||||++||+..
T Consensus 111 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~--~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~ 188 (236)
T cd03267 111 PVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPV--RQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVA 188 (236)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCh--hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHH
Confidence 454444321 1111 11222333333332 22222 3459999999999999999999999999999999976
Q ss_pred C
Q psy10767 147 S 147 (149)
Q Consensus 147 ~ 147 (149)
+
T Consensus 189 ~ 189 (236)
T cd03267 189 Q 189 (236)
T ss_pred H
Confidence 5
No 157
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.3e-36 Score=237.03 Aligned_cols=140 Identities=21% Similarity=0.267 Sum_probs=101.2
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec--------------ceeeeeecCcccccC
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV--------------RDIGYMPQVGLMRSG 69 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~--------------~~i~~~~q~~~~~~~ 69 (149)
++++|+||++.+||+++|+||||||||||+|+|+|+++|++|+|.++|.++ +.++|++|++..
T Consensus 25 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~--- 101 (289)
T PRK13645 25 KALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEY--- 101 (289)
T ss_pred ceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccccHHHHhccEEEEEeCcch---
Confidence 489999999999999999999999999999999999999999999998653 248999998421
Q ss_pred cccccCChhHHHhhc----ccCch--HHHHHHHhhhhHHH--HhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCC
Q psy10767 70 ALLAEDSPSYLLEYY----NCSTL--EDVFLYLCEQDQIL--FSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVG 141 (149)
Q Consensus 70 ~~~~~~~~~~~~~~~----~~~~~--~~~~~~~~~~~~~~--~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~g 141 (149)
.++ ..++.++..+. ..... .+.+..+++..++. ........+|+|||||++|||||+.+|++|||||||+|
T Consensus 102 ~~~-~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~ 180 (289)
T PRK13645 102 QLF-QETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGG 180 (289)
T ss_pred hhh-hhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccc
Confidence 111 12344443321 11111 12222333333221 11122234699999999999999999999999999999
Q ss_pred CCcCCC
Q psy10767 142 LDPVLS 147 (149)
Q Consensus 142 LD~~~~ 147 (149)
||+..+
T Consensus 181 LD~~~~ 186 (289)
T PRK13645 181 LDPKGE 186 (289)
T ss_pred CCHHHH
Confidence 999765
No 158
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=3.8e-36 Score=228.01 Aligned_cols=137 Identities=29% Similarity=0.349 Sum_probs=103.8
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec------------ceeeeeecCcccccCcc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV------------RDIGYMPQVGLMRSGAL 71 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~------------~~i~~~~q~~~~~~~~~ 71 (149)
.+++++||++.+|++++|+|+||||||||+++|+|+++|++|+|+++|.++ +.++|++|++.+
T Consensus 19 ~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~----- 93 (220)
T TIGR02982 19 QVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNL----- 93 (220)
T ss_pred eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhh-----
Confidence 479999999999999999999999999999999999999999999999865 248999998533
Q ss_pred cccCChhHHHhhc----ccCch---HHHHHHHhhhhHH---HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCC
Q psy10767 72 LAEDSPSYLLEYY----NCSTL---EDVFLYLCEQDQI---LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVG 141 (149)
Q Consensus 72 ~~~~~~~~~~~~~----~~~~~---~~~~~~~~~~~~~---~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~g 141 (149)
+...++.++..+. ..... ...+.++++.+++ ..... ..+|+|||||++||||++.+|+++||||||+|
T Consensus 94 ~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~lS~G~~qrv~laral~~~p~illlDEP~~~ 171 (220)
T TIGR02982 94 LGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYP--HNLSGGQKQRVAIARALVHRPKLVLADEPTAA 171 (220)
T ss_pred cCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcCh--hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCc
Confidence 2333444443321 11111 2233344444333 22222 34599999999999999999999999999999
Q ss_pred CCcCCC
Q psy10767 142 LDPVLS 147 (149)
Q Consensus 142 LD~~~~ 147 (149)
||+..+
T Consensus 172 LD~~~~ 177 (220)
T TIGR02982 172 LDSKSG 177 (220)
T ss_pred CCHHHH
Confidence 999764
No 159
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=100.00 E-value=3.8e-36 Score=221.48 Aligned_cols=111 Identities=33% Similarity=0.489 Sum_probs=93.4
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec--------ceeeeeecCcccccCcccccC
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV--------RDIGYMPQVGLMRSGALLAED 75 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~--------~~i~~~~q~~~~~~~~~~~~~ 75 (149)
++++++||++.+||+++|+||||||||||+++|+|+++|++|+|.++|.++ +.++|++|++. ++. .
T Consensus 16 ~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~-----~~~-~ 89 (178)
T cd03247 16 QVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVLNQRPY-----LFD-T 89 (178)
T ss_pred cceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEEccCCe-----eec-c
Confidence 589999999999999999999999999999999999999999999999764 34889998732 211 1
Q ss_pred ChhHHHhhcccCchHHHHHHHhhhhHHHHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCCC
Q psy10767 76 SPSYLLEYYNCSTLEDVFLYLCEQDQILFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~~ 147 (149)
++.++. ...+|+|||||++||||++.+|+++||||||++||+..+
T Consensus 90 tv~~~i---------------------------~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~ 134 (178)
T cd03247 90 TLRNNL---------------------------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITE 134 (178)
T ss_pred cHHHhh---------------------------cccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHH
Confidence 222211 234599999999999999999999999999999998764
No 160
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.5e-36 Score=241.66 Aligned_cols=141 Identities=20% Similarity=0.252 Sum_probs=102.5
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCcc----CCcceEEECCeec-------------ceeeeeecCccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLR----LDHGSISLSARTV-------------RDIGYMPQVGLM 66 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~----~~~G~i~~~g~~~-------------~~i~~~~q~~~~ 66 (149)
.+++||||+|++||++||+|+||||||||+++|+|+++ |++|+|.++|+++ +.|+|+||++..
T Consensus 21 ~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~ 100 (326)
T PRK11022 21 RAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPMT 100 (326)
T ss_pred EEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCchh
Confidence 47999999999999999999999999999999999997 4899999999875 149999998531
Q ss_pred ccCcccccCChhH----HHhhc-ccCc--hHHHHHHHhhhhHHHH----hhcCCCCCChhHHHHHHHHHHHhcCCCEEEE
Q psy10767 67 RSGALLAEDSPSY----LLEYY-NCST--LEDVFLYLCEQDQILF----SLVGSESAFGGQQRRVSFAVSLIHDPKILIL 135 (149)
Q Consensus 67 ~~~~~~~~~~~~~----~~~~~-~~~~--~~~~~~~~~~~~~~~~----~~~~~~~~sgGqkqrv~iaral~~~p~illl 135 (149)
.+.+..++.+ ..... .... ..+.+.++++.+++.. .......+||||||||+|||||+.+|++||+
T Consensus 101 ---~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv~iArAL~~~P~llil 177 (326)
T PRK11022 101 ---SLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIA 177 (326)
T ss_pred ---hcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 1222233322 22211 1111 1223344444444310 1122334599999999999999999999999
Q ss_pred cCCCCCCCcCCC
Q psy10767 136 DEPTVGLDPVLS 147 (149)
Q Consensus 136 DEPt~gLD~~~~ 147 (149)
||||++||+..+
T Consensus 178 DEPts~LD~~~~ 189 (326)
T PRK11022 178 DEPTTALDVTIQ 189 (326)
T ss_pred eCCCCCCCHHHH
Confidence 999999998765
No 161
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=1.1e-35 Score=225.10 Aligned_cols=137 Identities=22% Similarity=0.309 Sum_probs=100.8
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec-------------ceeeeeecCcccccCc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV-------------RDIGYMPQVGLMRSGA 70 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~-------------~~i~~~~q~~~~~~~~ 70 (149)
.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++ +.++|++|++.+
T Consensus 15 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~---- 90 (218)
T cd03290 15 ATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPWL---- 90 (218)
T ss_pred cceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcceEEEEcCCCcc----
Confidence 479999999999999999999999999999999999999999999988643 358999998532
Q ss_pred ccccCChhHHHhhcccCchHHHHHHHhhhhHH---HHh---------hcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCC
Q psy10767 71 LLAEDSPSYLLEYYNCSTLEDVFLYLCEQDQI---LFS---------LVGSESAFGGQQRRVSFAVSLIHDPKILILDEP 138 (149)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~---------~~~~~~~sgGqkqrv~iaral~~~p~illlDEP 138 (149)
+ ..++.++..+......+ ......+..++ ... ......+|+|||||++||||++.+|+++|||||
T Consensus 91 -~-~~t~~~nl~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEP 167 (218)
T cd03290 91 -L-NATVEENITFGSPFNKQ-RYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDP 167 (218)
T ss_pred -c-cccHHHHHhhcCcCCHH-HHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCC
Confidence 2 23455555432111111 11122222111 110 012335699999999999999999999999999
Q ss_pred CCCCCcCCC
Q psy10767 139 TVGLDPVLS 147 (149)
Q Consensus 139 t~gLD~~~~ 147 (149)
|++||+..+
T Consensus 168 t~~LD~~~~ 176 (218)
T cd03290 168 FSALDIHLS 176 (218)
T ss_pred ccccCHHHH
Confidence 999999754
No 162
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=3.6e-36 Score=259.62 Aligned_cols=138 Identities=29% Similarity=0.399 Sum_probs=106.3
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec---------ceeeeeecCcccccCccccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV---------RDIGYMPQVGLMRSGALLAE 74 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~---------~~i~~~~q~~~~~~~~~~~~ 74 (149)
++|+|+|++|++||.+||+|+||||||||+|+|+|+++|++|+|.+||.++ +.|+||+|++.++.+
T Consensus 487 ~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~g----- 561 (709)
T COG2274 487 PVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSG----- 561 (709)
T ss_pred chhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEcccchhhcC-----
Confidence 489999999999999999999999999999999999999999999999987 469999999655443
Q ss_pred CChhHHHhhcccCchHHHHHHHhhhhHH----------HHhhcCC--CCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCC
Q psy10767 75 DSPSYLLEYYNCSTLEDVFLYLCEQDQI----------LFSLVGS--ESAFGGQQRRVSFAVSLIHDPKILILDEPTVGL 142 (149)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~--~~~sgGqkqrv~iaral~~~p~illlDEPt~gL 142 (149)
++.+|..........+.+..++...+. .+..+++ ..+|||||||++||||++++|+|||||||||+|
T Consensus 562 -SI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaL 640 (709)
T COG2274 562 -SIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSAL 640 (709)
T ss_pred -cHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCEEEEeCccccc
Confidence 455555554322222222222222211 1122222 246999999999999999999999999999999
Q ss_pred CcCCC
Q psy10767 143 DPVLS 147 (149)
Q Consensus 143 D~~~~ 147 (149)
|+.+.
T Consensus 641 D~~sE 645 (709)
T COG2274 641 DPETE 645 (709)
T ss_pred CHhHH
Confidence 98753
No 163
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.1e-36 Score=241.15 Aligned_cols=139 Identities=22% Similarity=0.309 Sum_probs=104.5
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec------------ceeeeeecCcccccCcc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV------------RDIGYMPQVGLMRSGAL 71 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~------------~~i~~~~q~~~~~~~~~ 71 (149)
.+++||||+|.+||++||+|+||||||||+++|+|+++|++|+|.++|.++ +.|+|+||++. ..+
T Consensus 29 ~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~---~~l 105 (327)
T PRK11308 29 KALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPY---GSL 105 (327)
T ss_pred eEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCch---hhc
Confidence 479999999999999999999999999999999999999999999999775 35999999852 122
Q ss_pred cccCChhHHHh----hc-ccCc--hHHHHHHHhhhhHH----HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCC
Q psy10767 72 LAEDSPSYLLE----YY-NCST--LEDVFLYLCEQDQI----LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTV 140 (149)
Q Consensus 72 ~~~~~~~~~~~----~~-~~~~--~~~~~~~~~~~~~~----~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~ 140 (149)
.+..++.++.. .. .... ..+.+.++++.+++ ..... ..+|||||||++|||||+.+|++||+||||+
T Consensus 106 ~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p--~~LSgGq~QRv~iArAL~~~P~lLilDEPts 183 (327)
T PRK11308 106 NPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYP--HMFSGGQRQRIAIARALMLDPDVVVADEPVS 183 (327)
T ss_pred CCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCC--ccCCHHHHHHHHHHHHHHcCCCEEEEECCCc
Confidence 33334433332 11 1111 12233444444433 22233 3459999999999999999999999999999
Q ss_pred CCCcCCC
Q psy10767 141 GLDPVLS 147 (149)
Q Consensus 141 gLD~~~~ 147 (149)
+||+..+
T Consensus 184 ~LD~~~~ 190 (327)
T PRK11308 184 ALDVSVQ 190 (327)
T ss_pred cCCHHHH
Confidence 9998765
No 164
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4e-36 Score=220.15 Aligned_cols=108 Identities=32% Similarity=0.506 Sum_probs=91.4
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec---------ceeeeeecCcccccCccccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV---------RDIGYMPQVGLMRSGALLAE 74 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~---------~~i~~~~q~~~~~~~~~~~~ 74 (149)
.+++++||++.+|++++|+||||||||||+++|+|+++|++|+|.++|.++ +.++|++|++ .++.
T Consensus 16 ~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~-----~~~~- 89 (171)
T cd03228 16 PVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQDP-----FLFS- 89 (171)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEEEcCCc-----hhcc-
Confidence 579999999999999999999999999999999999999999999999765 2478888863 1111
Q ss_pred CChhHHHhhcccCchHHHHHHHhhhhHHHHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCCC
Q psy10767 75 DSPSYLLEYYNCSTLEDVFLYLCEQDQILFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~~ 147 (149)
.++.++. +|+|||||++||||++.+|+++||||||++||+..+
T Consensus 90 ~t~~e~l------------------------------LS~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~ 132 (171)
T cd03228 90 GTIRENI------------------------------LSGGQRQRIAIARALLRDPPILILDEATSALDPETE 132 (171)
T ss_pred chHHHHh------------------------------hCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHH
Confidence 1221111 499999999999999999999999999999998764
No 165
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=9.1e-36 Score=226.74 Aligned_cols=139 Identities=30% Similarity=0.383 Sum_probs=102.8
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCcc---CCcceEEECCeec------ceeeeeecCcccccCccccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLR---LDHGSISLSARTV------RDIGYMPQVGLMRSGALLAE 74 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~---~~~G~i~~~g~~~------~~i~~~~q~~~~~~~~~~~~ 74 (149)
.+++|+||++.+||+++|+||||||||||+++|+|+++ |++|+|.++|.++ +.++|++|++.+ +..
T Consensus 21 ~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~-----~~~ 95 (226)
T cd03234 21 RILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVAYVRQDDIL-----LPG 95 (226)
T ss_pred ccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhcccEEEeCCCCcc-----CcC
Confidence 57999999999999999999999999999999999999 8999999999865 359999998433 334
Q ss_pred CChhHHHhhc----ccC--ch---HHHHHH-HhhhhHHHH-hhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCC
Q psy10767 75 DSPSYLLEYY----NCS--TL---EDVFLY-LCEQDQILF-SLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLD 143 (149)
Q Consensus 75 ~~~~~~~~~~----~~~--~~---~~~~~~-~~~~~~~~~-~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD 143 (149)
.++.++..+. ... .. ...... .++..+... .......+|+||+||++|||||+.+|+++||||||+|||
T Consensus 96 ~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~illlDEP~~gLD 175 (226)
T cd03234 96 LTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLD 175 (226)
T ss_pred CcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCC
Confidence 4555554431 100 00 111111 222222211 111233569999999999999999999999999999999
Q ss_pred cCCC
Q psy10767 144 PVLS 147 (149)
Q Consensus 144 ~~~~ 147 (149)
+..+
T Consensus 176 ~~~~ 179 (226)
T cd03234 176 SFTA 179 (226)
T ss_pred HHHH
Confidence 9765
No 166
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=6.5e-36 Score=223.08 Aligned_cols=135 Identities=19% Similarity=0.186 Sum_probs=99.5
Q ss_pred eecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec-----ceeeeeecCcccccCcccccCChhHH
Q psy10767 6 ASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV-----RDIGYMPQVGLMRSGALLAEDSPSYL 80 (149)
Q Consensus 6 ~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~-----~~i~~~~q~~~~~~~~~~~~~~~~~~ 80 (149)
+.++||++++||+++|+|+||||||||+++|+|+.+|++|+|+++|.++ +.++|++|+.. +....++.++
T Consensus 16 l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~-----~~~~~tv~~~ 90 (195)
T PRK13541 16 LFDLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGHNLG-----LKLEMTVFEN 90 (195)
T ss_pred EEEEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhhhhhEEeccCCcC-----CCccCCHHHH
Confidence 4459999999999999999999999999999999999999999999765 24788988632 2233445555
Q ss_pred Hhhcc-cCchHHHHHHHhhhhHH---HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCCC
Q psy10767 81 LEYYN-CSTLEDVFLYLCEQDQI---LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 81 ~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~~ 147 (149)
..+.. ..........+++..++ ..+.. ..+|+|||||++||||++.+|+++||||||++||+..+
T Consensus 91 l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~~~~ 159 (195)
T PRK13541 91 LKFWSEIYNSAETLYAAIHYFKLHDLLDEKC--YSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENR 159 (195)
T ss_pred HHHHHHhcccHHHHHHHHHHcCCHhhhccCh--hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence 43321 11111222233333222 22222 34599999999999999999999999999999998764
No 167
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4e-36 Score=235.70 Aligned_cols=138 Identities=20% Similarity=0.200 Sum_probs=102.9
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec----------ceeeeeecCcccccCcccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV----------RDIGYMPQVGLMRSGALLA 73 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~----------~~i~~~~q~~~~~~~~~~~ 73 (149)
++++++||+|++||+++|+|+||||||||+++|+|+++|++|+|+++|.++ +.++|+||++... ++
T Consensus 24 ~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~---~~- 99 (280)
T PRK13633 24 LALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQ---IV- 99 (280)
T ss_pred ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHHhhheEEEecChhhh---hc-
Confidence 589999999999999999999999999999999999999999999998765 2489999985211 11
Q ss_pred cCChhHHHhhc----ccCc--hHHHHHHHhhhhHH---HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCc
Q psy10767 74 EDSPSYLLEYY----NCST--LEDVFLYLCEQDQI---LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDP 144 (149)
Q Consensus 74 ~~~~~~~~~~~----~~~~--~~~~~~~~~~~~~~---~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~ 144 (149)
..++.++..+. .... ..+.+..+++.+++ ..+.. ..+|+|||||++|||||+.+|+++||||||+|||+
T Consensus 100 ~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~--~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~ 177 (280)
T PRK13633 100 ATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAP--HLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDP 177 (280)
T ss_pred cccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCc--ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCH
Confidence 12333333221 1111 12233344444333 23333 34599999999999999999999999999999999
Q ss_pred CCC
Q psy10767 145 VLS 147 (149)
Q Consensus 145 ~~~ 147 (149)
..+
T Consensus 178 ~~~ 180 (280)
T PRK13633 178 SGR 180 (280)
T ss_pred HHH
Confidence 765
No 168
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6e-36 Score=228.66 Aligned_cols=139 Identities=29% Similarity=0.382 Sum_probs=103.6
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec-------ceeeeeecCcccccCcccccCC
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV-------RDIGYMPQVGLMRSGALLAEDS 76 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~-------~~i~~~~q~~~~~~~~~~~~~~ 76 (149)
.+++++||++.+|++++|+|+||||||||+++|+|+++|++|+|+++|+++ +.++|++|++.. +...+
T Consensus 14 ~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~-----~~~~t 88 (232)
T cd03300 14 VALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVFQNYAL-----FPHLT 88 (232)
T ss_pred eeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceEEEeccccc-----CCCCc
Confidence 579999999999999999999999999999999999999999999999765 358999998433 33334
Q ss_pred hhHHHhhc----ccCc--hHHHHHHHhhhhHHH-HhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCCC
Q psy10767 77 PSYLLEYY----NCST--LEDVFLYLCEQDQIL-FSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 77 ~~~~~~~~----~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~~ 147 (149)
+.++..+. .... .......+++.+++. ........+|+|||||++|||||+.+|+++||||||+|||+..+
T Consensus 89 ~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~ 166 (232)
T cd03300 89 VFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLR 166 (232)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence 44444321 1111 122233333333331 11112235699999999999999999999999999999998765
No 169
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.6e-36 Score=240.20 Aligned_cols=140 Identities=25% Similarity=0.324 Sum_probs=102.4
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec-------------------------ceee
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV-------------------------RDIG 58 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~-------------------------~~i~ 58 (149)
++++|+||+|++||++||+|+||||||||+++|+|+++|++|+|+++|.++ +.++
T Consensus 40 ~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig 119 (320)
T PRK13631 40 VALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVS 119 (320)
T ss_pred cceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccccccccccccchHHHHHhcEE
Confidence 489999999999999999999999999999999999999999999998543 2489
Q ss_pred eeecCcccccCcccccCChhHHHhhc----ccCc--hHHHHHHHhhhhHHHH--hhcCCCCCChhHHHHHHHHHHHhcCC
Q psy10767 59 YMPQVGLMRSGALLAEDSPSYLLEYY----NCST--LEDVFLYLCEQDQILF--SLVGSESAFGGQQRRVSFAVSLIHDP 130 (149)
Q Consensus 59 ~~~q~~~~~~~~~~~~~~~~~~~~~~----~~~~--~~~~~~~~~~~~~~~~--~~~~~~~~sgGqkqrv~iaral~~~p 130 (149)
|++|++.. .++ ..++.++..+. .... ....+..+++.+++.. .......+|||||||++|||||+.+|
T Consensus 120 ~v~Q~~~~---~l~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqRvaiAraL~~~p 195 (320)
T PRK13631 120 MVFQFPEY---QLF-KDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQP 195 (320)
T ss_pred EEEECchh---ccc-cchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCHHHHHHHHHHHHHHcCC
Confidence 99998421 122 22444444321 1111 1122333333333311 11223356999999999999999999
Q ss_pred CEEEEcCCCCCCCcCCC
Q psy10767 131 KILILDEPTVGLDPVLS 147 (149)
Q Consensus 131 ~illlDEPt~gLD~~~~ 147 (149)
++|||||||+|||+..+
T Consensus 196 ~iLLLDEPtsgLD~~~~ 212 (320)
T PRK13631 196 EILIFDEPTAGLDPKGE 212 (320)
T ss_pred CEEEEECCccCCCHHHH
Confidence 99999999999999764
No 170
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=8.9e-36 Score=223.95 Aligned_cols=131 Identities=19% Similarity=0.341 Sum_probs=101.4
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec---------ceeeeeecCcccccCccccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV---------RDIGYMPQVGLMRSGALLAE 74 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~---------~~i~~~~q~~~~~~~~~~~~ 74 (149)
++++++||++++|++++|+|+||||||||+++|+|+++|++|+|.++|.++ +.++|++|++.+ +.
T Consensus 22 ~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~-----~~- 95 (207)
T cd03369 22 PVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSLTIIPQDPTL-----FS- 95 (207)
T ss_pred ccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhEEEEecCCcc-----cC-
Confidence 589999999999999999999999999999999999999999999999764 359999998533 22
Q ss_pred CChhHHHhhcccCchHHHHHHHhhhhHHHHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCCC
Q psy10767 75 DSPSYLLEYYNCSTLEDVFLYLCEQDQILFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~~ 147 (149)
.++.++..+..... .......++ ... ....+|+||+||++||||++.+|+++||||||++||+..+
T Consensus 96 ~tv~~~l~~~~~~~-~~~~~~~l~----~~~--~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~ 161 (207)
T cd03369 96 GTIRSNLDPFDEYS-DEEIYGALR----VSE--GGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATD 161 (207)
T ss_pred ccHHHHhcccCCCC-HHHHHHHhh----ccC--CCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHH
Confidence 24545443322111 111222222 222 2345699999999999999999999999999999999754
No 171
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.7e-36 Score=237.48 Aligned_cols=139 Identities=24% Similarity=0.312 Sum_probs=113.2
Q ss_pred CccceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec-------------ceeeeeecCccccc
Q psy10767 2 ADVSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV-------------RDIGYMPQVGLMRS 68 (149)
Q Consensus 2 ~~~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~-------------~~i~~~~q~~~~~~ 68 (149)
+.+.++|+||++++|||+.|+|-||||||||+|||+++++|++|+|.++|.++ +++++|||.
T Consensus 40 ~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~----- 114 (386)
T COG4175 40 LVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQS----- 114 (386)
T ss_pred cEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhh-----
Confidence 35688999999999999999999999999999999999999999999999886 458999998
Q ss_pred CcccccCChhHHHhhc----ccCc--hHHHHHHHhhhhHH---HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCC
Q psy10767 69 GALLAEDSPSYLLEYY----NCST--LEDVFLYLCEQDQI---LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPT 139 (149)
Q Consensus 69 ~~~~~~~~~~~~~~~~----~~~~--~~~~~~~~~~~~~~---~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt 139 (149)
..++++.++.+|..|- +... .++.+.++++.+++ .++++. .|||||||||-|||||+.+|+||+||||+
T Consensus 115 FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~--eLSGGMqQRVGLARAla~~~~IlLMDEaF 192 (386)
T COG4175 115 FALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPN--ELSGGMQQRVGLARALANDPDILLMDEAF 192 (386)
T ss_pred hccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcc--cccchHHHHHHHHHHHccCCCEEEecCch
Confidence 6677777777776652 1111 13344455555554 233344 45999999999999999999999999999
Q ss_pred CCCCcCCC
Q psy10767 140 VGLDPVLS 147 (149)
Q Consensus 140 ~gLD~~~~ 147 (149)
|+|||.-|
T Consensus 193 SALDPLIR 200 (386)
T COG4175 193 SALDPLIR 200 (386)
T ss_pred hhcChHHH
Confidence 99999755
No 172
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.1e-36 Score=233.45 Aligned_cols=138 Identities=22% Similarity=0.331 Sum_probs=101.0
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCcc-----CCcceEEECCeec-----------ceeeeeecCcccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLR-----LDHGSISLSARTV-----------RDIGYMPQVGLMR 67 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~-----~~~G~i~~~g~~~-----------~~i~~~~q~~~~~ 67 (149)
.+++|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++ +.++|++|++.+
T Consensus 27 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l- 105 (269)
T PRK14259 27 EAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNP- 105 (269)
T ss_pred EEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHHHhhceEEEccCCcc-
Confidence 47999999999999999999999999999999999987 5899999999764 248999998532
Q ss_pred cCcccccCChhHHHhhcc----cCc-hHHHHHHHhhhhHHH---H--hhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcC
Q psy10767 68 SGALLAEDSPSYLLEYYN----CST-LEDVFLYLCEQDQIL---F--SLVGSESAFGGQQRRVSFAVSLIHDPKILILDE 137 (149)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~---~--~~~~~~~~sgGqkqrv~iaral~~~p~illlDE 137 (149)
+. .++.++..+.. ... ..+....+++..++. . .......+|+|||||++|||||+.+|++|||||
T Consensus 106 ----~~-~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDE 180 (269)
T PRK14259 106 ----FP-KSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAIEPEVILMDE 180 (269)
T ss_pred ----ch-hhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 22 24555544321 111 112222223322210 0 111223469999999999999999999999999
Q ss_pred CCCCCCcCCC
Q psy10767 138 PTVGLDPVLS 147 (149)
Q Consensus 138 Pt~gLD~~~~ 147 (149)
||+|||+..+
T Consensus 181 Pt~gLD~~~~ 190 (269)
T PRK14259 181 PCSALDPIST 190 (269)
T ss_pred CCccCCHHHH
Confidence 9999998764
No 173
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=6.6e-36 Score=230.81 Aligned_cols=141 Identities=26% Similarity=0.366 Sum_probs=99.8
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCee-----c-------------ceeeeeecCcc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSART-----V-------------RDIGYMPQVGL 65 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~-----~-------------~~i~~~~q~~~ 65 (149)
.+++|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.+ + +.++|++|++.
T Consensus 17 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~q~~~ 96 (253)
T TIGR02323 17 KGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERRRLMRTEWGFVHQNPR 96 (253)
T ss_pred eEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHHHHhhhcceEEEEeCcc
Confidence 46899999999999999999999999999999999999999999998865 2 24899999853
Q ss_pred cccCcccccCChhHHHhh----cccC---chHHHHHHHhhhhHHH--HhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEc
Q psy10767 66 MRSGALLAEDSPSYLLEY----YNCS---TLEDVFLYLCEQDQIL--FSLVGSESAFGGQQRRVSFAVSLIHDPKILILD 136 (149)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~----~~~~---~~~~~~~~~~~~~~~~--~~~~~~~~~sgGqkqrv~iaral~~~p~illlD 136 (149)
.. .....+..++... .... .....+..+++.+++. ........+|+|||||++|||||+.+|++||||
T Consensus 97 ~~---~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~vlllD 173 (253)
T TIGR02323 97 DG---LRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMD 173 (253)
T ss_pred cc---cCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 11 1111122222211 1100 1122223333333321 111223346999999999999999999999999
Q ss_pred CCCCCCCcCCC
Q psy10767 137 EPTVGLDPVLS 147 (149)
Q Consensus 137 EPt~gLD~~~~ 147 (149)
|||++||+..+
T Consensus 174 EP~~~LD~~~~ 184 (253)
T TIGR02323 174 EPTGGLDVSVQ 184 (253)
T ss_pred CCCccCCHHHH
Confidence 99999999765
No 174
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.8e-36 Score=227.98 Aligned_cols=136 Identities=32% Similarity=0.468 Sum_probs=103.0
Q ss_pred ceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec-------ceeeeeecCcccccCcccccCCh
Q psy10767 5 SASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV-------RDIGYMPQVGLMRSGALLAEDSP 77 (149)
Q Consensus 5 ~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~-------~~i~~~~q~~~~~~~~~~~~~~~ 77 (149)
+++++||++.+||+++|+||||||||||+++|+|+++|++|+|+++|.++ +.++|++|+.. ++...++
T Consensus 14 ~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~-----~~~~~t~ 88 (235)
T cd03299 14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVPQNYA-----LFPHMTV 88 (235)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEEeecCc-----cCCCccH
Confidence 68999999999999999999999999999999999999999999999765 35899999843 2333344
Q ss_pred hHHHhhc----ccCc--hHHHHHHHhhhhHH---HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCCC
Q psy10767 78 SYLLEYY----NCST--LEDVFLYLCEQDQI---LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 78 ~~~~~~~----~~~~--~~~~~~~~~~~~~~---~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~~ 147 (149)
.++..+. .... ..+.+..+++.+++ ..+.. .++|+|||||++||||++.+|++++|||||+|||+..+
T Consensus 89 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~ 165 (235)
T cd03299 89 YKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKP--ETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTK 165 (235)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCc--ccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHH
Confidence 4444321 1111 12222333333332 23333 34599999999999999999999999999999998765
No 175
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=7e-36 Score=251.06 Aligned_cols=137 Identities=24% Similarity=0.252 Sum_probs=105.7
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec----------ceeeeeecCcccccCcccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV----------RDIGYMPQVGLMRSGALLA 73 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~----------~~i~~~~q~~~~~~~~~~~ 73 (149)
.+++|+||++++|++++|+||||||||||+|+|+|+++|++|+|.++|.++ ..++|++|++ .++.
T Consensus 25 ~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~-----~~~~ 99 (510)
T PRK15439 25 EVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEP-----LLFP 99 (510)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEeccC-----ccCC
Confidence 478999999999999999999999999999999999999999999999764 2489999984 3344
Q ss_pred cCChhHHHhhcccC--chHHHHHHHhhhhHH---HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCCC
Q psy10767 74 EDSPSYLLEYYNCS--TLEDVFLYLCEQDQI---LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 74 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~---~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~~ 147 (149)
..++.++..+.... ...+.+.++++.+++ ..+.. ..+||||||||+|||||+.+|++|||||||+|||+..+
T Consensus 100 ~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~ 176 (510)
T PRK15439 100 NLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLDSSA--GSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAET 176 (510)
T ss_pred CCcHHHHhhcccccchHHHHHHHHHHHHcCCCccccCCh--hhCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHH
Confidence 45666665442111 112233344444333 22223 34599999999999999999999999999999999765
No 176
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=4e-36 Score=251.91 Aligned_cols=137 Identities=23% Similarity=0.241 Sum_probs=104.2
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec----------ceeeeeecCcccccCcccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV----------RDIGYMPQVGLMRSGALLA 73 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~----------~~i~~~~q~~~~~~~~~~~ 73 (149)
.+++|+||++.+||++||+||||||||||+|+|+|+++|++|+|.++|.++ +.++|++|++ .++.
T Consensus 18 ~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~-----~~~~ 92 (501)
T PRK10762 18 KALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIGIIHQEL-----NLIP 92 (501)
T ss_pred EEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEEcch-----hccC
Confidence 478999999999999999999999999999999999999999999999764 2489999984 2334
Q ss_pred cCChhHHHhhcc-------c-Cc--hHHHHHHHhhhhHH---HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCC
Q psy10767 74 EDSPSYLLEYYN-------C-ST--LEDVFLYLCEQDQI---LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTV 140 (149)
Q Consensus 74 ~~~~~~~~~~~~-------~-~~--~~~~~~~~~~~~~~---~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~ 140 (149)
..++.++..+.. . .. ....+.++++.+++ .++... .+|||||||++|||||+.+|++|||||||+
T Consensus 93 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--~LSgG~~qrv~la~al~~~p~lllLDEPt~ 170 (501)
T PRK10762 93 QLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVG--ELSIGEQQMVEIAKVLSFESKVIIMDEPTD 170 (501)
T ss_pred CCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchh--hCCHHHHHHHHHHHHHhcCCCEEEEeCCcC
Confidence 455555544311 0 01 11223333444333 122233 459999999999999999999999999999
Q ss_pred CCCcCCC
Q psy10767 141 GLDPVLS 147 (149)
Q Consensus 141 gLD~~~~ 147 (149)
+||+..+
T Consensus 171 ~LD~~~~ 177 (501)
T PRK10762 171 ALTDTET 177 (501)
T ss_pred CCCHHHH
Confidence 9999765
No 177
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.2e-36 Score=230.25 Aligned_cols=138 Identities=27% Similarity=0.406 Sum_probs=101.2
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccC-----CcceEEECCeec-----------ceeeeeecCcccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRL-----DHGSISLSARTV-----------RDIGYMPQVGLMR 67 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~-----~~G~i~~~g~~~-----------~~i~~~~q~~~~~ 67 (149)
.+++|+||++.+||+++|+|+||||||||+++|+|+++| ++|+|+++|+++ +.++|++|++..
T Consensus 21 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~- 99 (254)
T PRK14273 21 KALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNP- 99 (254)
T ss_pred eeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhceEEEeecccc-
Confidence 478999999999999999999999999999999999987 489999998753 248999998432
Q ss_pred cCcccccCChhHHHhhc----ccCc---hHHHHHHHhhhhHH-----HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEE
Q psy10767 68 SGALLAEDSPSYLLEYY----NCST---LEDVFLYLCEQDQI-----LFSLVGSESAFGGQQRRVSFAVSLIHDPKILIL 135 (149)
Q Consensus 68 ~~~~~~~~~~~~~~~~~----~~~~---~~~~~~~~~~~~~~-----~~~~~~~~~~sgGqkqrv~iaral~~~p~illl 135 (149)
+ ..++.++..+. .... ..+.....++..++ .........+|||||||++|||||+.+|++|||
T Consensus 100 ----~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllL 174 (254)
T PRK14273 100 ----F-LMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILM 174 (254)
T ss_pred ----c-cCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 2 23455444321 1111 12222333333221 011122345699999999999999999999999
Q ss_pred cCCCCCCCcCCC
Q psy10767 136 DEPTVGLDPVLS 147 (149)
Q Consensus 136 DEPt~gLD~~~~ 147 (149)
||||++||+..+
T Consensus 175 DEPt~~LD~~~~ 186 (254)
T PRK14273 175 DEPTSALDPIST 186 (254)
T ss_pred eCCCcccCHHHH
Confidence 999999999765
No 178
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-35 Score=230.82 Aligned_cols=138 Identities=25% Similarity=0.367 Sum_probs=101.2
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCcc-----CCcceEEECCeec-----------ceeeeeecCcccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLR-----LDHGSISLSARTV-----------RDIGYMPQVGLMR 67 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~-----~~~G~i~~~g~~~-----------~~i~~~~q~~~~~ 67 (149)
.+++|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|.++ +.++|++|++.+
T Consensus 27 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~- 105 (260)
T PRK10744 27 HALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTP- 105 (260)
T ss_pred EEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHHhcceEEEecCCcc-
Confidence 47999999999999999999999999999999999986 5899999999764 248999998532
Q ss_pred cCcccccCChhHHHhhc-----ccCc--hHHHHHHHhhhhHHH-----HhhcCCCCCChhHHHHHHHHHHHhcCCCEEEE
Q psy10767 68 SGALLAEDSPSYLLEYY-----NCST--LEDVFLYLCEQDQIL-----FSLVGSESAFGGQQRRVSFAVSLIHDPKILIL 135 (149)
Q Consensus 68 ~~~~~~~~~~~~~~~~~-----~~~~--~~~~~~~~~~~~~~~-----~~~~~~~~~sgGqkqrv~iaral~~~p~illl 135 (149)
+. .++.++..+. .... ..+....+++..++. ........+|+|||||++|||||+.+|+++||
T Consensus 106 ----~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllL 180 (260)
T PRK10744 106 ----FP-MSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLL 180 (260)
T ss_pred ----Cc-CcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHHHHHCCCCEEEE
Confidence 22 3444444321 1111 112233333333220 01122335699999999999999999999999
Q ss_pred cCCCCCCCcCCC
Q psy10767 136 DEPTVGLDPVLS 147 (149)
Q Consensus 136 DEPt~gLD~~~~ 147 (149)
||||++||+..+
T Consensus 181 DEPt~~LD~~~~ 192 (260)
T PRK10744 181 DEPCSALDPIST 192 (260)
T ss_pred cCCCccCCHHHH
Confidence 999999999764
No 179
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.2e-36 Score=229.40 Aligned_cols=138 Identities=28% Similarity=0.373 Sum_probs=101.8
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCcc---CCcceEEECCeec---------ceeeeeecCcccccCcc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLR---LDHGSISLSARTV---------RDIGYMPQVGLMRSGAL 71 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~---~~~G~i~~~g~~~---------~~i~~~~q~~~~~~~~~ 71 (149)
++++|+||++.+||+++|+||||||||||+++|+|+++ |++|+|+++|+++ +.++|+||++.++
T Consensus 16 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~---- 91 (246)
T PRK14269 16 QALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVF---- 91 (246)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEEEecCCccc----
Confidence 57999999999999999999999999999999999974 6899999999875 2489999985332
Q ss_pred cccCChhHHHhhc----ccC-c---hHHHHHHHhhhhHHH----H-hhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCC
Q psy10767 72 LAEDSPSYLLEYY----NCS-T---LEDVFLYLCEQDQIL----F-SLVGSESAFGGQQRRVSFAVSLIHDPKILILDEP 138 (149)
Q Consensus 72 ~~~~~~~~~~~~~----~~~-~---~~~~~~~~~~~~~~~----~-~~~~~~~~sgGqkqrv~iaral~~~p~illlDEP 138 (149)
. .++.++..+. ... . ....+..+++.+++. . .......+|+|||||++|||||+.+|+++|||||
T Consensus 92 -~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP 169 (246)
T PRK14269 92 -V-KSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEP 169 (246)
T ss_pred -c-ccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 2 2444444321 110 0 112223333333321 0 1122345699999999999999999999999999
Q ss_pred CCCCCcCCC
Q psy10767 139 TVGLDPVLS 147 (149)
Q Consensus 139 t~gLD~~~~ 147 (149)
|++||+..+
T Consensus 170 ~~~LD~~~~ 178 (246)
T PRK14269 170 TSALDPISS 178 (246)
T ss_pred cccCCHHHH
Confidence 999998754
No 180
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.5e-36 Score=233.51 Aligned_cols=138 Identities=20% Similarity=0.178 Sum_probs=103.1
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec---------ceeeeeecCcccccCccccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV---------RDIGYMPQVGLMRSGALLAE 74 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~---------~~i~~~~q~~~~~~~~~~~~ 74 (149)
++++|+||++.+||+++|+|+||||||||+++|+|+++|++|+|+++|.++ +.++|++|++.. .+..
T Consensus 21 ~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~----~~~~ 96 (277)
T PRK13642 21 NQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKIGMVFQNPDN----QFVG 96 (277)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcceEEEEECHHH----hhcc
Confidence 479999999999999999999999999999999999999999999999775 248999998521 1222
Q ss_pred CChhHHHhhc----ccCc--hHHHHHHHhhhhHH---HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcC
Q psy10767 75 DSPSYLLEYY----NCST--LEDVFLYLCEQDQI---LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPV 145 (149)
Q Consensus 75 ~~~~~~~~~~----~~~~--~~~~~~~~~~~~~~---~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~ 145 (149)
.++.++..+. .... ..+.+..+++..++ ..+. ...+|+|||||++|||||+.+|+++||||||++||+.
T Consensus 97 ~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~ 174 (277)
T PRK13642 97 ATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTRE--PARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPT 174 (277)
T ss_pred CCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCC--cccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHH
Confidence 3444444321 1111 11223333333332 2222 3346999999999999999999999999999999997
Q ss_pred CC
Q psy10767 146 LS 147 (149)
Q Consensus 146 ~~ 147 (149)
.+
T Consensus 175 ~~ 176 (277)
T PRK13642 175 GR 176 (277)
T ss_pred HH
Confidence 65
No 181
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=100.00 E-value=7.4e-36 Score=222.93 Aligned_cols=117 Identities=31% Similarity=0.471 Sum_probs=96.6
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCc--cCCcceEEECCeec------ceeeeeecCcccccCcccccC
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRL--RLDHGSISLSARTV------RDIGYMPQVGLMRSGALLAED 75 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~--~~~~G~i~~~g~~~------~~i~~~~q~~~~~~~~~~~~~ 75 (149)
++++++||++++||+++|+||||||||||+++|+|++ +|++|+|.++|+++ +.++|++|++ .++...
T Consensus 23 ~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~-----~~~~~~ 97 (194)
T cd03213 23 QLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDD-----ILHPTL 97 (194)
T ss_pred cceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhhheEEEccCcc-----cCCCCC
Confidence 5899999999999999999999999999999999999 99999999999875 3589999973 233333
Q ss_pred ChhHHHhhcccCchHHHHHHHhhhhHHHHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCCC
Q psy10767 76 SPSYLLEYYNCSTLEDVFLYLCEQDQILFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~~ 147 (149)
++.++..+.. . .. .+|+|||||++|||||+.+|+++||||||++||+..+
T Consensus 98 t~~~~i~~~~---------~-----------~~--~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~ 147 (194)
T cd03213 98 TVRETLMFAA---------K-----------LR--GLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSA 147 (194)
T ss_pred cHHHHHHHHH---------H-----------hc--cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHH
Confidence 4444332110 0 00 4599999999999999999999999999999998765
No 182
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.6e-36 Score=231.10 Aligned_cols=138 Identities=28% Similarity=0.411 Sum_probs=101.0
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccC-----CcceEEECCeec-----------ceeeeeecCcccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRL-----DHGSISLSARTV-----------RDIGYMPQVGLMR 67 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~-----~~G~i~~~g~~~-----------~~i~~~~q~~~~~ 67 (149)
++++|+||++++||++||+|+||||||||+++|+|+++| ++|+|.++|.++ +.++|++|++.+
T Consensus 26 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~- 104 (258)
T PRK14268 26 QALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNP- 104 (258)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhhEEEEecCCcc-
Confidence 479999999999999999999999999999999999975 799999998764 248999998432
Q ss_pred cCcccccCChhHHHhhc----ccCc--hHHHHHHHhhhhHHH----H-hhcCCCCCChhHHHHHHHHHHHhcCCCEEEEc
Q psy10767 68 SGALLAEDSPSYLLEYY----NCST--LEDVFLYLCEQDQIL----F-SLVGSESAFGGQQRRVSFAVSLIHDPKILILD 136 (149)
Q Consensus 68 ~~~~~~~~~~~~~~~~~----~~~~--~~~~~~~~~~~~~~~----~-~~~~~~~~sgGqkqrv~iaral~~~p~illlD 136 (149)
+. .++.++..+. .... ....+..+++..++. . .......+|+|||||++|||||+.+|+++|||
T Consensus 105 ----~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllD 179 (258)
T PRK14268 105 ----FP-MSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFD 179 (258)
T ss_pred ----Cc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 22 3444444321 1111 111223333332220 0 11122356999999999999999999999999
Q ss_pred CCCCCCCcCCC
Q psy10767 137 EPTVGLDPVLS 147 (149)
Q Consensus 137 EPt~gLD~~~~ 147 (149)
|||+|||+..+
T Consensus 180 EPt~~LD~~~~ 190 (258)
T PRK14268 180 EPTSALDPIST 190 (258)
T ss_pred CCCcccCHHHH
Confidence 99999999765
No 183
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=1.2e-35 Score=238.11 Aligned_cols=141 Identities=23% Similarity=0.298 Sum_probs=102.8
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCC---cceEEECCeec-------------ceeeeeecCcccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLD---HGSISLSARTV-------------RDIGYMPQVGLMR 67 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~---~G~i~~~g~~~-------------~~i~~~~q~~~~~ 67 (149)
.+++|+||+|++||++||+|+||||||||+++|+|+++|+ +|+|.++|.++ +.|+|+||++..
T Consensus 30 ~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~- 108 (330)
T PRK09473 30 TAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMT- 108 (330)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCchh-
Confidence 4799999999999999999999999999999999999986 99999999875 259999998521
Q ss_pred cCcccccCChhHHH----hhcc-cCc--hHHHHHHHhhhhHHHH--h--hcCCCCCChhHHHHHHHHHHHhcCCCEEEEc
Q psy10767 68 SGALLAEDSPSYLL----EYYN-CST--LEDVFLYLCEQDQILF--S--LVGSESAFGGQQRRVSFAVSLIHDPKILILD 136 (149)
Q Consensus 68 ~~~~~~~~~~~~~~----~~~~-~~~--~~~~~~~~~~~~~~~~--~--~~~~~~~sgGqkqrv~iaral~~~p~illlD 136 (149)
.+.+..++.++. .... ... ....+.++++..++.. . ......+||||||||+|||||+.+|++||+|
T Consensus 109 --~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv~IArAL~~~P~llilD 186 (330)
T PRK09473 109 --SLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIAD 186 (330)
T ss_pred --hcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 222333333322 2211 111 1122333344333211 0 1123356999999999999999999999999
Q ss_pred CCCCCCCcCCC
Q psy10767 137 EPTVGLDPVLS 147 (149)
Q Consensus 137 EPt~gLD~~~~ 147 (149)
|||++||+..+
T Consensus 187 EPts~LD~~~~ 197 (330)
T PRK09473 187 EPTTALDVTVQ 197 (330)
T ss_pred CCCccCCHHHH
Confidence 99999998765
No 184
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-35 Score=228.23 Aligned_cols=139 Identities=22% Similarity=0.295 Sum_probs=101.5
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCcc--C---CcceEEECCeec-----------ceeeeeecCcccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLR--L---DHGSISLSARTV-----------RDIGYMPQVGLMR 67 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~--~---~~G~i~~~g~~~-----------~~i~~~~q~~~~~ 67 (149)
.+++|+||+|++||+++|+|+||||||||+++|+|+++ | ++|+|.++|.++ +.++|+||++.
T Consensus 18 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~-- 95 (252)
T PRK14256 18 HAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPN-- 95 (252)
T ss_pred eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccEEEEecCCC--
Confidence 47999999999999999999999999999999999986 4 689999999764 23899999843
Q ss_pred cCcccccCChhHHHhhc----ccCc---hHHHHHHHhhhhHHH-----HhhcCCCCCChhHHHHHHHHHHHhcCCCEEEE
Q psy10767 68 SGALLAEDSPSYLLEYY----NCST---LEDVFLYLCEQDQIL-----FSLVGSESAFGGQQRRVSFAVSLIHDPKILIL 135 (149)
Q Consensus 68 ~~~~~~~~~~~~~~~~~----~~~~---~~~~~~~~~~~~~~~-----~~~~~~~~~sgGqkqrv~iaral~~~p~illl 135 (149)
++...++.++..+. .... ..+.....++..++. ........+|+|||||++|||||+.+|+++||
T Consensus 96 ---~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~p~llll 172 (252)
T PRK14256 96 ---PFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIAVKPEVILM 172 (252)
T ss_pred ---CCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 33334454444321 1111 112223333333221 01122335699999999999999999999999
Q ss_pred cCCCCCCCcCCC
Q psy10767 136 DEPTVGLDPVLS 147 (149)
Q Consensus 136 DEPt~gLD~~~~ 147 (149)
||||+|||+..+
T Consensus 173 DEP~~gLD~~~~ 184 (252)
T PRK14256 173 DEPASALDPIST 184 (252)
T ss_pred cCCcccCCHHHH
Confidence 999999999765
No 185
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=1.2e-35 Score=230.69 Aligned_cols=137 Identities=29% Similarity=0.336 Sum_probs=102.2
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCC---cceEEECCeec--------------ceeeeeecCccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLD---HGSISLSARTV--------------RDIGYMPQVGLM 66 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~---~G~i~~~g~~~--------------~~i~~~~q~~~~ 66 (149)
.+++++||++.+||+++|+||||||||||+++|+|+++|+ +|+|.++|.++ +.++|+||++.
T Consensus 18 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~~~- 96 (262)
T PRK09984 18 QALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQFN- 96 (262)
T ss_pred EEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHhheEEEccccc-
Confidence 4789999999999999999999999999999999999886 49999999764 14899999843
Q ss_pred ccCcccccCChhHHHhhccc-------------C-chHHHHHHHhhhhHH---HHhhcCCCCCChhHHHHHHHHHHHhcC
Q psy10767 67 RSGALLAEDSPSYLLEYYNC-------------S-TLEDVFLYLCEQDQI---LFSLVGSESAFGGQQRRVSFAVSLIHD 129 (149)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~-------------~-~~~~~~~~~~~~~~~---~~~~~~~~~~sgGqkqrv~iaral~~~ 129 (149)
++...++.++..+... . .....+..+++.+++ .++.. ..+|+|||||++||||++.+
T Consensus 97 ----~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~LS~G~~qrv~laral~~~ 170 (262)
T PRK09984 97 ----LVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRV--STLSGGQQQRVAIARALMQQ 170 (262)
T ss_pred ----cccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCc--cccCHHHHHHHHHHHHHhcC
Confidence 2333445544432100 0 012223334443333 22333 34599999999999999999
Q ss_pred CCEEEEcCCCCCCCcCCC
Q psy10767 130 PKILILDEPTVGLDPVLS 147 (149)
Q Consensus 130 p~illlDEPt~gLD~~~~ 147 (149)
|++|||||||+|||+..+
T Consensus 171 p~llllDEPt~~LD~~~~ 188 (262)
T PRK09984 171 AKVILADEPIASLDPESA 188 (262)
T ss_pred CCEEEecCccccCCHHHH
Confidence 999999999999998754
No 186
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=7.1e-36 Score=258.31 Aligned_cols=137 Identities=23% Similarity=0.297 Sum_probs=106.2
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeecc---------eeeeeecCcccccCccccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVR---------DIGYMPQVGLMRSGALLAE 74 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~~---------~i~~~~q~~~~~~~~~~~~ 74 (149)
++++|+||++++||.+||+|+||||||||+|+|+|+++|++|+|.+||.+++ .|+|++|++.++.
T Consensus 467 ~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~------ 540 (686)
T TIGR03797 467 LILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMS------ 540 (686)
T ss_pred cceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEccCCccCc------
Confidence 5899999999999999999999999999999999999999999999998873 5999999965443
Q ss_pred CChhHHHhhcccCchHHHHHHHhhhhHH---H-------HhhcCC--CCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCC
Q psy10767 75 DSPSYLLEYYNCSTLEDVFLYLCEQDQI---L-------FSLVGS--ESAFGGQQRRVSFAVSLIHDPKILILDEPTVGL 142 (149)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-------~~~~~~--~~~sgGqkqrv~iaral~~~p~illlDEPt~gL 142 (149)
.++.+|..+... ..++....+++..+. . +..++. ..+|||||||++||||++++|++|||||||++|
T Consensus 541 gTI~eNi~~~~~-~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~iLiLDEpTS~L 619 (686)
T TIGR03797 541 GSIFENIAGGAP-LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSAL 619 (686)
T ss_pred ccHHHHHhcCCC-CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCC
Confidence 355666655322 222223333332221 1 111211 357999999999999999999999999999999
Q ss_pred CcCCC
Q psy10767 143 DPVLS 147 (149)
Q Consensus 143 D~~~~ 147 (149)
|+...
T Consensus 620 D~~te 624 (686)
T TIGR03797 620 DNRTQ 624 (686)
T ss_pred CHHHH
Confidence 98753
No 187
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.3e-36 Score=229.58 Aligned_cols=136 Identities=26% Similarity=0.337 Sum_probs=104.0
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeecc----------eeeeeecCcccccCcccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVR----------DIGYMPQVGLMRSGALLA 73 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~~----------~i~~~~q~~~~~~~~~~~ 73 (149)
.+++|+||++.+||+++||||||||||||+|+|+|+++|++|+|.++|+++. .|+--||.. .++.
T Consensus 18 ~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~-----rlF~ 92 (250)
T COG0411 18 TAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIARTFQIT-----RLFP 92 (250)
T ss_pred EEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccceeecccc-----cccC
Confidence 3789999999999999999999999999999999999999999999999872 377788874 4455
Q ss_pred cCChhHHHhhc--------------cc-Cch---HHHHHHHhhhhHH---HHhhcCCCCCChhHHHHHHHHHHHhcCCCE
Q psy10767 74 EDSPSYLLEYY--------------NC-STL---EDVFLYLCEQDQI---LFSLVGSESAFGGQQRRVSFAVSLIHDPKI 132 (149)
Q Consensus 74 ~~~~~~~~~~~--------------~~-~~~---~~~~~~~~~~~~~---~~~~~~~~~~sgGqkqrv~iaral~~~p~i 132 (149)
.+++.+|.... .. ... .+.+..+++.+++ .+.+.+ .||+|||+|+.|||||+.+|++
T Consensus 93 ~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~--~LsyG~qR~LEIArALa~~P~l 170 (250)
T COG0411 93 GLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAG--NLSYGQQRRLEIARALATQPKL 170 (250)
T ss_pred CCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhh--cCChhHhHHHHHHHHHhcCCCE
Confidence 56665554321 00 011 2233334444443 233333 4589999999999999999999
Q ss_pred EEEcCCCCCCCcCC
Q psy10767 133 LILDEPTVGLDPVL 146 (149)
Q Consensus 133 lllDEPt~gLD~~~ 146 (149)
|+||||.+||.+..
T Consensus 171 LLLDEPaAGln~~e 184 (250)
T COG0411 171 LLLDEPAAGLNPEE 184 (250)
T ss_pred EEecCccCCCCHHH
Confidence 99999999998864
No 188
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.8e-36 Score=233.50 Aligned_cols=138 Identities=25% Similarity=0.312 Sum_probs=102.6
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec-----------ceeeeeecCcccccCccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV-----------RDIGYMPQVGLMRSGALL 72 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~-----------~~i~~~~q~~~~~~~~~~ 72 (149)
.+++|+||++.+||+++|+||||||||||+++|+|+++|++|+|+++|.++ +.|+|++|++.. . .
T Consensus 16 ~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~---~-~ 91 (275)
T PRK13639 16 EALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDD---Q-L 91 (275)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhheEEEeeChhh---h-h
Confidence 479999999999999999999999999999999999999999999999765 248999998420 1 1
Q ss_pred ccCChhHHHhhc----ccCc--hHHHHHHHhhhhHH---HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCC
Q psy10767 73 AEDSPSYLLEYY----NCST--LEDVFLYLCEQDQI---LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLD 143 (149)
Q Consensus 73 ~~~~~~~~~~~~----~~~~--~~~~~~~~~~~~~~---~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD 143 (149)
...++.++..+. .... ..+.+..+++..++ ..+. ...+|+||+||++||||++.+|+++||||||+|||
T Consensus 92 ~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~--~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD 169 (275)
T PRK13639 92 FAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKP--PHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLD 169 (275)
T ss_pred ccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCC--hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCC
Confidence 122444444321 1111 11223334443333 2222 23469999999999999999999999999999999
Q ss_pred cCCC
Q psy10767 144 PVLS 147 (149)
Q Consensus 144 ~~~~ 147 (149)
+..+
T Consensus 170 ~~~~ 173 (275)
T PRK13639 170 PMGA 173 (275)
T ss_pred HHHH
Confidence 9765
No 189
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-35 Score=231.25 Aligned_cols=138 Identities=25% Similarity=0.366 Sum_probs=101.3
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccC-----CcceEEECCeec-----------ceeeeeecCcccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRL-----DHGSISLSARTV-----------RDIGYMPQVGLMR 67 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~-----~~G~i~~~g~~~-----------~~i~~~~q~~~~~ 67 (149)
.+++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|+++|+++ +.++|++|++.++
T Consensus 33 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~ 112 (267)
T PRK14235 33 QALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPNPF 112 (267)
T ss_pred EEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHHhhceEEEecCCCCC
Confidence 479999999999999999999999999999999999975 899999999764 2489999985322
Q ss_pred cCcccccCChhHHHhhc----cc--C--chHHHHHHHhhhhHHHH-----hhcCCCCCChhHHHHHHHHHHHhcCCCEEE
Q psy10767 68 SGALLAEDSPSYLLEYY----NC--S--TLEDVFLYLCEQDQILF-----SLVGSESAFGGQQRRVSFAVSLIHDPKILI 134 (149)
Q Consensus 68 ~~~~~~~~~~~~~~~~~----~~--~--~~~~~~~~~~~~~~~~~-----~~~~~~~~sgGqkqrv~iaral~~~p~ill 134 (149)
. .++.++..+. .. . .....+..+++..++.. .......+|+|||||++|||||+.+|++||
T Consensus 113 -----~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lll 186 (267)
T PRK14235 113 -----P-KSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVIL 186 (267)
T ss_pred -----C-CcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 2 2444444321 11 0 11122233333333210 112234569999999999999999999999
Q ss_pred EcCCCCCCCcCCC
Q psy10767 135 LDEPTVGLDPVLS 147 (149)
Q Consensus 135 lDEPt~gLD~~~~ 147 (149)
|||||++||+..+
T Consensus 187 LDEPt~~LD~~~~ 199 (267)
T PRK14235 187 MDEPCSALDPIAT 199 (267)
T ss_pred EeCCCcCCCHHHH
Confidence 9999999999764
No 190
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.5e-36 Score=250.68 Aligned_cols=137 Identities=21% Similarity=0.219 Sum_probs=103.0
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec----------ceeeeeecCcccccCcccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV----------RDIGYMPQVGLMRSGALLA 73 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~----------~~i~~~~q~~~~~~~~~~~ 73 (149)
.+++|+||++++||++||+||||||||||+|+|+|+++|++|+|+++|.++ +.++|++|++. ++.
T Consensus 19 ~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~-----~~~ 93 (510)
T PRK09700 19 HALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIGIIYQELS-----VID 93 (510)
T ss_pred EEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCeEEEeeccc-----ccC
Confidence 478999999999999999999999999999999999999999999999764 24899999843 233
Q ss_pred cCChhHHHhhc--------cc---C--chHHHHHHHhhhhHH---HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcC
Q psy10767 74 EDSPSYLLEYY--------NC---S--TLEDVFLYLCEQDQI---LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDE 137 (149)
Q Consensus 74 ~~~~~~~~~~~--------~~---~--~~~~~~~~~~~~~~~---~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDE 137 (149)
..++.++..+. .. . .....+..+++.+++ .++.. ..+||||||||+|||||+.+|++|||||
T Consensus 94 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~--~~LSgG~~qrv~ia~al~~~p~lllLDE 171 (510)
T PRK09700 94 ELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKV--ANLSISHKQMLEIAKTLMLDAKVIIMDE 171 (510)
T ss_pred CCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccch--hhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 34444444321 10 0 011222333333333 12223 3469999999999999999999999999
Q ss_pred CCCCCCcCCC
Q psy10767 138 PTVGLDPVLS 147 (149)
Q Consensus 138 Pt~gLD~~~~ 147 (149)
||++||+..+
T Consensus 172 Pt~~LD~~~~ 181 (510)
T PRK09700 172 PTSSLTNKEV 181 (510)
T ss_pred CCCCCCHHHH
Confidence 9999999765
No 191
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=7.3e-36 Score=217.52 Aligned_cols=104 Identities=26% Similarity=0.344 Sum_probs=83.8
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeecceeeeeecCcccccCcccccCChhHHHh-
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAEDSPSYLLE- 82 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~- 82 (149)
++++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... . ......
T Consensus 14 ~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~---~---------------~~~~~~~ 75 (163)
T cd03216 14 KALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFA---S---------------PRDARRA 75 (163)
T ss_pred EEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcC---C---------------HHHHHhc
Confidence 578999999999999999999999999999999999999999999998753211 0 000000
Q ss_pred hcccCchHHHHHHHhhhhHHHHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCCC
Q psy10767 83 YYNCSTLEDVFLYLCEQDQILFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~~ 147 (149)
.... ... +|+|||||++||||++.+|+++||||||++||+..+
T Consensus 76 ~i~~--------------------~~q--LS~G~~qrl~laral~~~p~illlDEP~~~LD~~~~ 118 (163)
T cd03216 76 GIAM--------------------VYQ--LSVGERQMVEIARALARNARLLILDEPTAALTPAEV 118 (163)
T ss_pred CeEE--------------------EEe--cCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHH
Confidence 0000 000 599999999999999999999999999999998765
No 192
>KOG0058|consensus
Probab=100.00 E-value=7.8e-36 Score=252.88 Aligned_cols=137 Identities=29% Similarity=0.403 Sum_probs=106.3
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec---------ceeeeeecCcccccCccccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV---------RDIGYMPQVGLMRSGALLAE 74 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~---------~~i~~~~q~~~~~~~~~~~~ 74 (149)
++++|+||+|++||++||+||||+||||+.++|.++|+|++|+|.+||.++ ++||+|.|+|.++..
T Consensus 482 ~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~----- 556 (716)
T KOG0058|consen 482 PVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSG----- 556 (716)
T ss_pred hhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHeeeeeccceeecc-----
Confidence 489999999999999999999999999999999999999999999999988 459999999765543
Q ss_pred CChhHHHhhcccCchHHHHHHHhhhhH----H------HHhhcCCC--CCChhHHHHHHHHHHHhcCCCEEEEcCCCCCC
Q psy10767 75 DSPSYLLEYYNCSTLEDVFLYLCEQDQ----I------LFSLVGSE--SAFGGQQRRVSFAVSLIHDPKILILDEPTVGL 142 (149)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~------~~~~~~~~--~~sgGqkqrv~iaral~~~p~illlDEPt~gL 142 (149)
++.+|..+-.....++.+..+.+..+ + .+..+++. .+|||||||+||||||++||.||||||.||+|
T Consensus 557 -sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDEATSAL 635 (716)
T KOG0058|consen 557 -SIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSAL 635 (716)
T ss_pred -cHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEEEechhhhc
Confidence 34555544322222333322222211 1 22333333 46999999999999999999999999999999
Q ss_pred CcCC
Q psy10767 143 DPVL 146 (149)
Q Consensus 143 D~~~ 146 (149)
|..+
T Consensus 636 DaeS 639 (716)
T KOG0058|consen 636 DAES 639 (716)
T ss_pred chhh
Confidence 9864
No 193
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1.5e-35 Score=215.59 Aligned_cols=135 Identities=24% Similarity=0.310 Sum_probs=107.5
Q ss_pred ceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec-------------ceeeeeecCcccccCcc
Q psy10767 5 SASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV-------------RDIGYMPQVGLMRSGAL 71 (149)
Q Consensus 5 ~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~-------------~~i~~~~q~~~~~~~~~ 71 (149)
+|+++++.++.||.++|+||||||||||+-+++|+.+|++|+|++.|+++ +++|||||. ..+
T Consensus 25 IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQS-----F~L 99 (228)
T COG4181 25 ILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQS-----FHL 99 (228)
T ss_pred EeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHhhccceeEEEEe-----eec
Confidence 78999999999999999999999999999999999999999999999876 469999997 666
Q ss_pred cccCChhHHHhhc----cc--CchHHHHHHHhhhhHH---HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCC
Q psy10767 72 LAEDSPSYLLEYY----NC--STLEDVFLYLCEQDQI---LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGL 142 (149)
Q Consensus 72 ~~~~~~~~~~~~~----~~--~~~~~~~~~~~~~~~~---~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gL 142 (149)
.+.++.-+|.... +. ......+..+++.+++ +.-+.. .+||||+|||+||||++..|++|+.||||.+|
T Consensus 100 ip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~--qLSGGEQQRVAiARAfa~~P~vLfADEPTGNL 177 (228)
T COG4181 100 IPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPA--QLSGGEQQRVALARAFAGRPDVLFADEPTGNL 177 (228)
T ss_pred cccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCcc--ccCchHHHHHHHHHHhcCCCCEEeccCCCCCc
Confidence 7777766665432 21 1122334444454444 222233 34999999999999999999999999999999
Q ss_pred CcCC
Q psy10767 143 DPVL 146 (149)
Q Consensus 143 D~~~ 146 (149)
|...
T Consensus 178 D~~T 181 (228)
T COG4181 178 DRAT 181 (228)
T ss_pred chhH
Confidence 9753
No 194
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-35 Score=232.45 Aligned_cols=139 Identities=20% Similarity=0.302 Sum_probs=100.5
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec------ceeeeeecCcccccCcccccCCh
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV------RDIGYMPQVGLMRSGALLAEDSP 77 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~------~~i~~~~q~~~~~~~~~~~~~~~ 77 (149)
++++|+||++.+||+++|+||||||||||+++|+|+++|++|+|.++|.++ ..++|++|++.+.... ....
T Consensus 21 ~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~~---~~~~ 97 (272)
T PRK15056 21 TALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYVPQSEEVDWSF---PVLV 97 (272)
T ss_pred EEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccceEEEeccccccccCC---Ccch
Confidence 478999999999999999999999999999999999999999999999765 2599999985321110 0011
Q ss_pred hHHHhh--------cccC--chHHHHHHHhhhhHH---HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCc
Q psy10767 78 SYLLEY--------YNCS--TLEDVFLYLCEQDQI---LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDP 144 (149)
Q Consensus 78 ~~~~~~--------~~~~--~~~~~~~~~~~~~~~---~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~ 144 (149)
.++..+ .... ........+++..++ ..+.. ..+|||||||++|||||+.+|+++||||||++||+
T Consensus 98 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~--~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~ 175 (272)
T PRK15056 98 EDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQI--GELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDV 175 (272)
T ss_pred hhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCc--ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCH
Confidence 111110 0000 112223333333333 22223 34699999999999999999999999999999999
Q ss_pred CCC
Q psy10767 145 VLS 147 (149)
Q Consensus 145 ~~~ 147 (149)
..+
T Consensus 176 ~~~ 178 (272)
T PRK15056 176 KTE 178 (272)
T ss_pred HHH
Confidence 765
No 195
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9e-36 Score=233.97 Aligned_cols=138 Identities=24% Similarity=0.250 Sum_probs=103.5
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCc---ceEEECCeec---------ceeeeeecCcccccCcc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDH---GSISLSARTV---------RDIGYMPQVGLMRSGAL 71 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~---G~i~~~g~~~---------~~i~~~~q~~~~~~~~~ 71 (149)
++++++||++.+||++||+||||||||||+++|+|+++|++ |+|.++|.++ +.++|++|++.. .
T Consensus 21 ~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~----~ 96 (282)
T PRK13640 21 PALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDN----Q 96 (282)
T ss_pred cceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhheEEEEECHHH----h
Confidence 48999999999999999999999999999999999999987 8999999875 248999998521 1
Q ss_pred cccCChhHHHhhc----ccCc--hHHHHHHHhhhhHH---HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCC
Q psy10767 72 LAEDSPSYLLEYY----NCST--LEDVFLYLCEQDQI---LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGL 142 (149)
Q Consensus 72 ~~~~~~~~~~~~~----~~~~--~~~~~~~~~~~~~~---~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gL 142 (149)
+...++.++..+. .... ..+.+..+++.+++ ..... ..+|+|||||++|||||+.+|+++||||||+||
T Consensus 97 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~--~~LS~G~~qrv~laral~~~P~llllDEPt~gL 174 (282)
T PRK13640 97 FVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEP--ANLSGGQKQRVAIAGILAVEPKIIILDESTSML 174 (282)
T ss_pred hccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCc--ccCCHHHHHHHHHHHHHHcCCCEEEEECCcccC
Confidence 2223444444321 1111 11223334444333 22333 345999999999999999999999999999999
Q ss_pred CcCCC
Q psy10767 143 DPVLS 147 (149)
Q Consensus 143 D~~~~ 147 (149)
|+..+
T Consensus 175 D~~~~ 179 (282)
T PRK13640 175 DPAGK 179 (282)
T ss_pred CHHHH
Confidence 99764
No 196
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=1.7e-35 Score=229.04 Aligned_cols=136 Identities=27% Similarity=0.389 Sum_probs=100.6
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeecceeeeeecCcccccCcccccCChhHHHhh
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAEDSPSYLLEY 83 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~ 83 (149)
.+++++||++++||+++|+||||||||||+++|+|+++|++|+|.+++. ..++|++|++.+.... ..++.++...
T Consensus 18 ~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~--~~i~~v~q~~~~~~~l---~~~~~~~~~~ 92 (251)
T PRK09544 18 RVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGK--LRIGYVPQKLYLDTTL---PLTVNRFLRL 92 (251)
T ss_pred eEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCc--cCEEEecccccccccc---ChhHHHHHhc
Confidence 4799999999999999999999999999999999999999999999874 3699999985332110 0123333222
Q ss_pred cccCchHHHHHHHhhhhHH---HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCCC
Q psy10767 84 YNCSTLEDVFLYLCEQDQI---LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~~ 147 (149)
.. ....+.+..+++..++ ..... ..+|+|||||++||||++.+|+++||||||++||+..+
T Consensus 93 ~~-~~~~~~~~~~l~~~gl~~~~~~~~--~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~ 156 (251)
T PRK09544 93 RP-GTKKEDILPALKRVQAGHLIDAPM--QKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQ 156 (251)
T ss_pred cc-cccHHHHHHHHHHcCChHHHhCCh--hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHH
Confidence 11 1112223333333333 22333 34599999999999999999999999999999998764
No 197
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=1.8e-35 Score=251.97 Aligned_cols=137 Identities=24% Similarity=0.335 Sum_probs=106.2
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec---------ceeeeeecCcccccCccccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV---------RDIGYMPQVGLMRSGALLAE 74 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~---------~~i~~~~q~~~~~~~~~~~~ 74 (149)
++++|+||++++||.++|+|+||||||||+++|+|+++|++|+|.++|.++ +.|+|+||++.++.
T Consensus 355 ~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~------ 428 (592)
T PRK10790 355 LVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLA------ 428 (592)
T ss_pred ceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEEccCCcccc------
Confidence 589999999999999999999999999999999999999999999999876 35999999954433
Q ss_pred CChhHHHhhcccCchHHHHHHHhhhhHH---H-------HhhcC--CCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCC
Q psy10767 75 DSPSYLLEYYNCSTLEDVFLYLCEQDQI---L-------FSLVG--SESAFGGQQRRVSFAVSLIHDPKILILDEPTVGL 142 (149)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-------~~~~~--~~~~sgGqkqrv~iaral~~~p~illlDEPt~gL 142 (149)
.++.+|..+.. ...++....+++..+. . +..++ ...+|||||||++||||++++|+++||||||++|
T Consensus 429 ~Ti~~NI~~~~-~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~illlDEpts~L 507 (592)
T PRK10790 429 DTFLANVTLGR-DISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANI 507 (592)
T ss_pred chHHHHHHhCC-CCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccC
Confidence 35566665543 2223333333333221 1 11111 1347999999999999999999999999999999
Q ss_pred CcCCC
Q psy10767 143 DPVLS 147 (149)
Q Consensus 143 D~~~~ 147 (149)
|+...
T Consensus 508 D~~t~ 512 (592)
T PRK10790 508 DSGTE 512 (592)
T ss_pred CHHHH
Confidence 98753
No 198
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-35 Score=249.71 Aligned_cols=137 Identities=23% Similarity=0.170 Sum_probs=104.1
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccC--CcceEEECCeec----------ceeeeeecCcccccCcc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRL--DHGSISLSARTV----------RDIGYMPQVGLMRSGAL 71 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~--~~G~i~~~g~~~----------~~i~~~~q~~~~~~~~~ 71 (149)
++++|+||++++||+++|+||||||||||+|+|+|+++| ++|+|+++|.++ +.++|++|++. +
T Consensus 19 ~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~-----~ 93 (506)
T PRK13549 19 KALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAGIAIIHQELA-----L 93 (506)
T ss_pred EeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCCeEEEEeccc-----c
Confidence 479999999999999999999999999999999999986 899999999764 34999999842 3
Q ss_pred cccCChhHHHhhccc------Cch---HHHHHHHhhhhHH---HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCC
Q psy10767 72 LAEDSPSYLLEYYNC------STL---EDVFLYLCEQDQI---LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPT 139 (149)
Q Consensus 72 ~~~~~~~~~~~~~~~------~~~---~~~~~~~~~~~~~---~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt 139 (149)
+...++.++..+... ... .+.+..+++.+++ ..+.. ..+|||||||++|||||+.+|++|||||||
T Consensus 94 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~LSgGqkqrv~la~al~~~p~lllLDEPt 171 (506)
T PRK13549 94 VKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPV--GNLGLGQQQLVEIAKALNKQARLLILDEPT 171 (506)
T ss_pred CCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccch--hhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 344556555543210 011 1223334444333 12222 346999999999999999999999999999
Q ss_pred CCCCcCCC
Q psy10767 140 VGLDPVLS 147 (149)
Q Consensus 140 ~gLD~~~~ 147 (149)
++||+..+
T Consensus 172 ~~LD~~~~ 179 (506)
T PRK13549 172 ASLTESET 179 (506)
T ss_pred CCCCHHHH
Confidence 99999765
No 199
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-35 Score=227.74 Aligned_cols=138 Identities=27% Similarity=0.368 Sum_probs=101.1
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCcc-----CCcceEEECCeec-----------ceeeeeecCcccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLR-----LDHGSISLSARTV-----------RDIGYMPQVGLMR 67 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~-----~~~G~i~~~g~~~-----------~~i~~~~q~~~~~ 67 (149)
.+++++||++++||+++|+|+||||||||+++|+|+++ |++|+|.++|+++ +.++|++|++.++
T Consensus 18 ~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 97 (251)
T PRK14251 18 EALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPTPF 97 (251)
T ss_pred eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHhhccEEEEecCCccC
Confidence 57899999999999999999999999999999999997 4799999999764 2489999985332
Q ss_pred cCcccccCChhHHHhhc----ccCc---hHHHHHHHhhhhHHH-----HhhcCCCCCChhHHHHHHHHHHHhcCCCEEEE
Q psy10767 68 SGALLAEDSPSYLLEYY----NCST---LEDVFLYLCEQDQIL-----FSLVGSESAFGGQQRRVSFAVSLIHDPKILIL 135 (149)
Q Consensus 68 ~~~~~~~~~~~~~~~~~----~~~~---~~~~~~~~~~~~~~~-----~~~~~~~~~sgGqkqrv~iaral~~~p~illl 135 (149)
. .++.++..+. .... .......+++..++. ........+|+|||||++|||||+.+|+++||
T Consensus 98 -----~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~laral~~~p~llll 171 (251)
T PRK14251 98 -----P-FSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLL 171 (251)
T ss_pred -----C-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHHHhcCCCEEEe
Confidence 2 3444444321 1111 112223333332220 11122335699999999999999999999999
Q ss_pred cCCCCCCCcCCC
Q psy10767 136 DEPTVGLDPVLS 147 (149)
Q Consensus 136 DEPt~gLD~~~~ 147 (149)
||||++||+..+
T Consensus 172 DEP~~~LD~~~~ 183 (251)
T PRK14251 172 DEPTSALDPISS 183 (251)
T ss_pred cCCCccCCHHHH
Confidence 999999999765
No 200
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.1e-35 Score=231.32 Aligned_cols=138 Identities=25% Similarity=0.392 Sum_probs=101.4
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCcc-----CCcceEEECCeec-----------ceeeeeecCcccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLR-----LDHGSISLSARTV-----------RDIGYMPQVGLMR 67 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~-----~~~G~i~~~g~~~-----------~~i~~~~q~~~~~ 67 (149)
.+++++||+|.+||+++|+||||||||||+++|+|+++ |++|+|.++|.++ +.++|++|++.+
T Consensus 53 ~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~i~~v~q~~~l- 131 (285)
T PRK14254 53 QALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQKPNP- 131 (285)
T ss_pred eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchHhhhccEEEEecCCcc-
Confidence 47999999999999999999999999999999999987 6899999999764 248999998532
Q ss_pred cCcccccCChhHHHhhc----ccCc-hHHHHHHHhhhhHHH-----HhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcC
Q psy10767 68 SGALLAEDSPSYLLEYY----NCST-LEDVFLYLCEQDQIL-----FSLVGSESAFGGQQRRVSFAVSLIHDPKILILDE 137 (149)
Q Consensus 68 ~~~~~~~~~~~~~~~~~----~~~~-~~~~~~~~~~~~~~~-----~~~~~~~~~sgGqkqrv~iaral~~~p~illlDE 137 (149)
+.. ++.++..+. .... ..+.+..+++..++. ........+|+|||||++|||||+.+|++|||||
T Consensus 132 ----~~~-tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAraL~~~p~lLLLDE 206 (285)
T PRK14254 132 ----FPK-SIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDE 206 (285)
T ss_pred ----CcC-CHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 222 444444321 1111 122233333333210 1112234569999999999999999999999999
Q ss_pred CCCCCCcCCC
Q psy10767 138 PTVGLDPVLS 147 (149)
Q Consensus 138 Pt~gLD~~~~ 147 (149)
||+|||+..+
T Consensus 207 Pts~LD~~~~ 216 (285)
T PRK14254 207 PASALDPVAT 216 (285)
T ss_pred CCCCCCHHHH
Confidence 9999999754
No 201
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=1.7e-35 Score=256.73 Aligned_cols=138 Identities=22% Similarity=0.307 Sum_probs=105.9
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec---------ceeeeeecCcccccCccccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV---------RDIGYMPQVGLMRSGALLAE 74 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~---------~~i~~~~q~~~~~~~~~~~~ 74 (149)
++++|+||++++||.+||+||||||||||+++|+|+++|++|+|.++|.++ +.|+|++|++.++.
T Consensus 493 ~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~------ 566 (710)
T TIGR03796 493 PLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFE------ 566 (710)
T ss_pred CcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhh------
Confidence 589999999999999999999999999999999999999999999999886 35999999954433
Q ss_pred CChhHHHhhcccCchHHHHHHHhhhhHH----------HHhhcC--CCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCC
Q psy10767 75 DSPSYLLEYYNCSTLEDVFLYLCEQDQI----------LFSLVG--SESAFGGQQRRVSFAVSLIHDPKILILDEPTVGL 142 (149)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~--~~~~sgGqkqrv~iaral~~~p~illlDEPt~gL 142 (149)
.++.+|..+......++...++++..+. .+..++ ...+|||||||++||||++++|+++||||||++|
T Consensus 567 gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~iliLDEptS~L 646 (710)
T TIGR03796 567 GTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSAL 646 (710)
T ss_pred ccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccC
Confidence 3556666543222222323233222211 111222 1347999999999999999999999999999999
Q ss_pred CcCCC
Q psy10767 143 DPVLS 147 (149)
Q Consensus 143 D~~~~ 147 (149)
|+...
T Consensus 647 D~~te 651 (710)
T TIGR03796 647 DPETE 651 (710)
T ss_pred CHHHH
Confidence 98653
No 202
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=2e-35 Score=251.03 Aligned_cols=138 Identities=25% Similarity=0.331 Sum_probs=106.1
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec---------ceeeeeecCcccccCccccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV---------RDIGYMPQVGLMRSGALLAE 74 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~---------~~i~~~~q~~~~~~~~~~~~ 74 (149)
++++|+||++++|+.++|+|+||||||||+++|+|+++|++|+|.++|.++ +.|+|+||++.++.
T Consensus 357 ~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~------ 430 (582)
T PRK11176 357 PALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFN------ 430 (582)
T ss_pred ccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEccCceeec------
Confidence 589999999999999999999999999999999999999999999999876 35899999954433
Q ss_pred CChhHHHhhcccC-chHHHHHHHhhhhHH----------HHhhcCC--CCCChhHHHHHHHHHHHhcCCCEEEEcCCCCC
Q psy10767 75 DSPSYLLEYYNCS-TLEDVFLYLCEQDQI----------LFSLVGS--ESAFGGQQRRVSFAVSLIHDPKILILDEPTVG 141 (149)
Q Consensus 75 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~----------~~~~~~~--~~~sgGqkqrv~iaral~~~p~illlDEPt~g 141 (149)
.++.+|..+.... ..++....+++..+. .+..++. ..+|||||||++||||++++|+++||||||++
T Consensus 431 ~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ililDEptsa 510 (582)
T PRK11176 431 DTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSA 510 (582)
T ss_pred chHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEEEECcccc
Confidence 4556666543211 123333333332221 1122222 34799999999999999999999999999999
Q ss_pred CCcCCC
Q psy10767 142 LDPVLS 147 (149)
Q Consensus 142 LD~~~~ 147 (149)
||+...
T Consensus 511 LD~~t~ 516 (582)
T PRK11176 511 LDTESE 516 (582)
T ss_pred CCHHHH
Confidence 999753
No 203
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.6e-35 Score=220.74 Aligned_cols=117 Identities=32% Similarity=0.437 Sum_probs=96.0
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCc--cCCcceEEECCeec-----ceeeeeecCcccccCcccccCC
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRL--RLDHGSISLSARTV-----RDIGYMPQVGLMRSGALLAEDS 76 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~--~~~~G~i~~~g~~~-----~~i~~~~q~~~~~~~~~~~~~~ 76 (149)
++++++||++++||+++|+||||||||||+++|+|+. +|++|+|.++|+++ +.++|++|++ .++...+
T Consensus 21 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~-----~~~~~~t 95 (192)
T cd03232 21 QLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTGYVEQQD-----VHSPNLT 95 (192)
T ss_pred EeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceEEecccC-----ccccCCc
Confidence 5899999999999999999999999999999999986 48999999999875 4689999973 2333344
Q ss_pred hhHHHhhcccCchHHHHHHHhhhhHHHHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCCC
Q psy10767 77 PSYLLEYYNCSTLEDVFLYLCEQDQILFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~~ 147 (149)
+.++..+.. . . . .+|+|||||++||||++.+|+++||||||++||+..+
T Consensus 96 v~~~l~~~~----------~------~----~--~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~ 144 (192)
T cd03232 96 VREALRFSA----------L------L----R--GLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAA 144 (192)
T ss_pred HHHHHHHHH----------H------H----h--cCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHH
Confidence 444433210 0 0 0 5699999999999999999999999999999999765
No 204
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=100.00 E-value=3.1e-35 Score=207.17 Aligned_cols=123 Identities=29% Similarity=0.459 Sum_probs=93.3
Q ss_pred eecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec---------ceeeeeecCcccccCcccccCC
Q psy10767 6 ASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV---------RDIGYMPQVGLMRSGALLAEDS 76 (149)
Q Consensus 6 ~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~---------~~i~~~~q~~~~~~~~~~~~~~ 76 (149)
|+|+||++++|++++|+|+||||||||+++|+|.++|++|+|.+++.++ ..++|++|+.. +....+
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~-----~~~~~t 75 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQ-----LFPGLT 75 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHC-----HHTTSB
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeecccccccccccccccccccccccccccccccccccccc-----cccccc
Confidence 6899999999999999999999999999999999999999999999876 34899999833 333333
Q ss_pred hhHHHhhcccCchHHHHHHHhhhhHH---HHhhc--CCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCC
Q psy10767 77 PSYLLEYYNCSTLEDVFLYLCEQDQI---LFSLV--GSESAFGGQQRRVSFAVSLIHDPKILILDEPTV 140 (149)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~--~~~~~sgGqkqrv~iaral~~~p~illlDEPt~ 140 (149)
+.++ ........+++.... ....+ ....+|+|||||++||||++.+|+++|||||||
T Consensus 76 v~~~-------~~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 76 VREN-------ESDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp HHHH-------HHHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred cccc-------cccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 4333 111222233333222 12222 113459999999999999999999999999997
No 205
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=2.8e-35 Score=225.73 Aligned_cols=137 Identities=28% Similarity=0.364 Sum_probs=103.0
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec-------ceeeeeecCcccccCcccccCC
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV-------RDIGYMPQVGLMRSGALLAEDS 76 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~-------~~i~~~~q~~~~~~~~~~~~~~ 76 (149)
.+++|+||++.+||+++|+||||||||||+++|+|+++|++|+|.++|.++ +.++|+||++.+ +...+
T Consensus 14 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~-----~~~~t 88 (237)
T TIGR00968 14 QALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVFQHYAL-----FKHLT 88 (237)
T ss_pred eeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEEecChhh-----ccCCc
Confidence 479999999999999999999999999999999999999999999999775 348999998533 33334
Q ss_pred hhHHHhhc----ccCc--hHHHHHHHhhhhHH---HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCCC
Q psy10767 77 PSYLLEYY----NCST--LEDVFLYLCEQDQI---LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 77 ~~~~~~~~----~~~~--~~~~~~~~~~~~~~---~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~~ 147 (149)
+.++..+. .... ..+.+..+++..++ .++.. ..+|+||+||++||||++.+|+++||||||+|||+..+
T Consensus 89 ~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~ 166 (237)
T TIGR00968 89 VRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYP--NQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVR 166 (237)
T ss_pred HHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCh--hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence 44444321 1111 11222333333332 22222 34699999999999999999999999999999998764
No 206
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-35 Score=237.28 Aligned_cols=141 Identities=18% Similarity=0.233 Sum_probs=102.4
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCcc----CCcceEEECCeec-------------ceeeeeecCccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLR----LDHGSISLSARTV-------------RDIGYMPQVGLM 66 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~----~~~G~i~~~g~~~-------------~~i~~~~q~~~~ 66 (149)
.+++|+||+|.+||++||+|+||||||||+++|+|+.+ |++|+|+++|+++ +.|+|+||++..
T Consensus 21 ~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~~~ 100 (330)
T PRK15093 21 KAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQS 100 (330)
T ss_pred EEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCcch
Confidence 47999999999999999999999999999999999986 5899999999865 259999998531
Q ss_pred ccCcccccCChhHHHhh----ccc-----Cc---hHHHHHHHhhhhHHHH----hhcCCCCCChhHHHHHHHHHHHhcCC
Q psy10767 67 RSGALLAEDSPSYLLEY----YNC-----ST---LEDVFLYLCEQDQILF----SLVGSESAFGGQQRRVSFAVSLIHDP 130 (149)
Q Consensus 67 ~~~~~~~~~~~~~~~~~----~~~-----~~---~~~~~~~~~~~~~~~~----~~~~~~~~sgGqkqrv~iaral~~~p 130 (149)
.+.+..++.++... +.. .. ..+.+..+++.+++.. .......|||||||||+|||||+.+|
T Consensus 101 ---~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG~~QRv~iArAL~~~P 177 (330)
T PRK15093 101 ---CLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIALANQP 177 (330)
T ss_pred ---hcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHCCC
Confidence 12223333333221 100 01 1223334444443311 11223356999999999999999999
Q ss_pred CEEEEcCCCCCCCcCCC
Q psy10767 131 KILILDEPTVGLDPVLS 147 (149)
Q Consensus 131 ~illlDEPt~gLD~~~~ 147 (149)
++||+||||++||+..+
T Consensus 178 ~llilDEPts~LD~~~~ 194 (330)
T PRK15093 178 RLLIADEPTNAMEPTTQ 194 (330)
T ss_pred CEEEEeCCCCcCCHHHH
Confidence 99999999999998765
No 207
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=6.7e-36 Score=227.36 Aligned_cols=136 Identities=29% Similarity=0.504 Sum_probs=109.9
Q ss_pred ceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec-----ceeeeeecCcccccCcccccCChhH
Q psy10767 5 SASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV-----RDIGYMPQVGLMRSGALLAEDSPSY 79 (149)
Q Consensus 5 ~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~-----~~i~~~~q~~~~~~~~~~~~~~~~~ 79 (149)
+++|+||.+++|+++|++|+|||||||.+|+|.|++.|++|+|.|+|.++ .+|||.|.+ ..+++..++.+
T Consensus 17 av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~rIGyLPEE-----RGLy~k~tv~d 91 (300)
T COG4152 17 AVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGYLPEE-----RGLYPKMTVED 91 (300)
T ss_pred eecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhhhhhcccChhh-----hccCccCcHHH
Confidence 78999999999999999999999999999999999999999999999876 469999998 44566666666
Q ss_pred HHhhc----ccCc--hHHHHHHHhhhhHH---HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCCC
Q psy10767 80 LLEYY----NCST--LEDVFLYLCEQDQI---LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 80 ~~~~~----~~~~--~~~~~~~~~~~~~~---~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~~ 147 (149)
...++ +... .+.....+++..++ ..+.+.. ||.|++|++.+..+++++|+++|||||||||||.+.
T Consensus 92 ql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~--LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~ 166 (300)
T COG4152 92 QLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKE--LSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNV 166 (300)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHH--hhhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhH
Confidence 65554 2221 23344455555544 2333444 499999999999999999999999999999999764
No 208
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-35 Score=247.78 Aligned_cols=137 Identities=22% Similarity=0.226 Sum_probs=103.4
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec----------ceeeeeecCcccccCcccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV----------RDIGYMPQVGLMRSGALLA 73 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~----------~~i~~~~q~~~~~~~~~~~ 73 (149)
++++|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++ +.++|++|++. ++.
T Consensus 12 ~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~-----~~~ 86 (491)
T PRK10982 12 KALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQELN-----LVL 86 (491)
T ss_pred EeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEecccc-----ccc
Confidence 479999999999999999999999999999999999999999999999764 35899999842 333
Q ss_pred cCChhHHHhhcc--cC----ch---HHHHHHHhhhhHH---HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCC
Q psy10767 74 EDSPSYLLEYYN--CS----TL---EDVFLYLCEQDQI---LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVG 141 (149)
Q Consensus 74 ~~~~~~~~~~~~--~~----~~---~~~~~~~~~~~~~---~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~g 141 (149)
..++.++..+.. .. .. .+.+..+++..++ .++.. ..|||||||||+|||||+.+|++|||||||+|
T Consensus 87 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~LSgGq~qrv~lA~al~~~p~lllLDEPt~~ 164 (491)
T PRK10982 87 QRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKV--ATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSS 164 (491)
T ss_pred CCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCch--hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCC
Confidence 445555543211 00 11 1122333333332 12222 34599999999999999999999999999999
Q ss_pred CCcCCC
Q psy10767 142 LDPVLS 147 (149)
Q Consensus 142 LD~~~~ 147 (149)
||+..+
T Consensus 165 LD~~~~ 170 (491)
T PRK10982 165 LTEKEV 170 (491)
T ss_pred CCHHHH
Confidence 999764
No 209
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.9e-35 Score=227.09 Aligned_cols=138 Identities=25% Similarity=0.419 Sum_probs=101.5
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccC-----CcceEEECCeec-----------ceeeeeecCcccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRL-----DHGSISLSARTV-----------RDIGYMPQVGLMR 67 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~-----~~G~i~~~g~~~-----------~~i~~~~q~~~~~ 67 (149)
.+++|+||++++||+++|+|+||||||||+++|+|+.+| ++|+|.++|.++ +.++|+||++.+
T Consensus 18 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~- 96 (251)
T PRK14270 18 QALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNP- 96 (251)
T ss_pred eeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhheEEEecCCCc-
Confidence 479999999999999999999999999999999999875 789999999764 248999998532
Q ss_pred cCcccccCChhHHHhhc----ccCch---HHHHHHHhhhhHHH-----HhhcCCCCCChhHHHHHHHHHHHhcCCCEEEE
Q psy10767 68 SGALLAEDSPSYLLEYY----NCSTL---EDVFLYLCEQDQIL-----FSLVGSESAFGGQQRRVSFAVSLIHDPKILIL 135 (149)
Q Consensus 68 ~~~~~~~~~~~~~~~~~----~~~~~---~~~~~~~~~~~~~~-----~~~~~~~~~sgGqkqrv~iaral~~~p~illl 135 (149)
+. .++.++..+. ..... ...+..+++..++. ........+|+|||||++||||++.+|+++||
T Consensus 97 ----~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llll 171 (251)
T PRK14270 97 ----FP-MSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILM 171 (251)
T ss_pred ----CC-CcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 22 3444444321 11011 12222333333210 11122345699999999999999999999999
Q ss_pred cCCCCCCCcCCC
Q psy10767 136 DEPTVGLDPVLS 147 (149)
Q Consensus 136 DEPt~gLD~~~~ 147 (149)
||||+|||+..+
T Consensus 172 DEP~~~LD~~~~ 183 (251)
T PRK14270 172 DEPTSALDPIST 183 (251)
T ss_pred eCCcccCCHHHH
Confidence 999999999765
No 210
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=100.00 E-value=9.5e-36 Score=219.78 Aligned_cols=112 Identities=34% Similarity=0.508 Sum_probs=87.5
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeecce---------eeeeecCcccccCccccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRD---------IGYMPQVGLMRSGALLAE 74 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~~~---------i~~~~q~~~~~~~~~~~~ 74 (149)
.+++++||++.+||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ++|++|
T Consensus 13 ~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q------------ 80 (180)
T cd03214 13 TVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVPQ------------ 80 (180)
T ss_pred eeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHHHH------------
Confidence 47999999999999999999999999999999999999999999999976421 122221
Q ss_pred CChhHHHhhcccCchHHHHHHHhhhhHHHHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCCC
Q psy10767 75 DSPSYLLEYYNCSTLEDVFLYLCEQDQILFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~~ 147 (149)
............... ..+|+|||||++||||++.+|+++||||||++||+..+
T Consensus 81 ------------------~l~~~gl~~~~~~~~--~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~ 133 (180)
T cd03214 81 ------------------ALELLGLAHLADRPF--NELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQ 133 (180)
T ss_pred ------------------HHHHcCCHhHhcCCc--ccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHH
Confidence 000001111112222 34599999999999999999999999999999998764
No 211
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.9e-35 Score=229.23 Aligned_cols=136 Identities=29% Similarity=0.382 Sum_probs=99.5
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCcc-----CCcceEEECCeec-----------ceeeeeecCcccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLR-----LDHGSISLSARTV-----------RDIGYMPQVGLMR 67 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~-----~~~G~i~~~g~~~-----------~~i~~~~q~~~~~ 67 (149)
.+++++||++.+||+++|+|+||||||||+++|+|+.+ |++|+|.++|+++ +.++|++|++.++
T Consensus 35 ~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~ 114 (268)
T PRK14248 35 RAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKPNPF 114 (268)
T ss_pred eeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHHHHhccEEEEecCCccC
Confidence 47999999999999999999999999999999999864 6899999998764 2489999985332
Q ss_pred cCcccccCChhHHHhhc----ccCc---hHHHHHHHhhhhHH-------HHhhcCCCCCChhHHHHHHHHHHHhcCCCEE
Q psy10767 68 SGALLAEDSPSYLLEYY----NCST---LEDVFLYLCEQDQI-------LFSLVGSESAFGGQQRRVSFAVSLIHDPKIL 133 (149)
Q Consensus 68 ~~~~~~~~~~~~~~~~~----~~~~---~~~~~~~~~~~~~~-------~~~~~~~~~~sgGqkqrv~iaral~~~p~il 133 (149)
. .++.++..+. .... .++.....++..++ ..+. ...+|+|||||++|||||+.+|++|
T Consensus 115 -----~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--~~~LSgGq~qrl~laral~~~p~ll 186 (268)
T PRK14248 115 -----P-KSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSS--ALSLSGGQQQRLCIARTLAMKPAVL 186 (268)
T ss_pred -----c-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcC--cccCCHHHHHHHHHHHHHhCCCCEE
Confidence 2 2344443321 1111 11222222222211 2222 3346999999999999999999999
Q ss_pred EEcCCCCCCCcCCC
Q psy10767 134 ILDEPTVGLDPVLS 147 (149)
Q Consensus 134 llDEPt~gLD~~~~ 147 (149)
||||||+|||+..+
T Consensus 187 lLDEPt~~LD~~~~ 200 (268)
T PRK14248 187 LLDEPASALDPISN 200 (268)
T ss_pred EEcCCCcccCHHHH
Confidence 99999999999765
No 212
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.5e-35 Score=225.78 Aligned_cols=136 Identities=27% Similarity=0.399 Sum_probs=99.8
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccC-----CcceEEECCeec-----------ceeeeeecCcccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRL-----DHGSISLSARTV-----------RDIGYMPQVGLMR 67 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~-----~~G~i~~~g~~~-----------~~i~~~~q~~~~~ 67 (149)
++++|+||++++||+++|+||||||||||+++|+|+.+| ++|+|.++|+++ +.++|++|++.+
T Consensus 17 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~- 95 (250)
T PRK14240 17 QALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNP- 95 (250)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhccEEEEecCCcc-
Confidence 479999999999999999999999999999999999763 689999999764 248999998432
Q ss_pred cCcccccCChhHHHhhc----ccCc---hHHHHHHHhhhhHH-------HHhhcCCCCCChhHHHHHHHHHHHhcCCCEE
Q psy10767 68 SGALLAEDSPSYLLEYY----NCST---LEDVFLYLCEQDQI-------LFSLVGSESAFGGQQRRVSFAVSLIHDPKIL 133 (149)
Q Consensus 68 ~~~~~~~~~~~~~~~~~----~~~~---~~~~~~~~~~~~~~-------~~~~~~~~~~sgGqkqrv~iaral~~~p~il 133 (149)
+. .++.++..+. .... ..+.....++..++ .... ...+|+|||||++|||||+.+|+++
T Consensus 96 ----~~-~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--~~~LS~G~~qrv~laral~~~p~ll 168 (250)
T PRK14240 96 ----FP-MSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKS--ALGLSGGQQQRLCIARALAVEPEVL 168 (250)
T ss_pred ----Cc-ccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcC--CCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 22 3444444321 1111 12222222222221 1222 3346999999999999999999999
Q ss_pred EEcCCCCCCCcCCC
Q psy10767 134 ILDEPTVGLDPVLS 147 (149)
Q Consensus 134 llDEPt~gLD~~~~ 147 (149)
||||||++||+..+
T Consensus 169 llDEP~~~LD~~~~ 182 (250)
T PRK14240 169 LMDEPTSALDPIST 182 (250)
T ss_pred EEeCCCccCCHHHH
Confidence 99999999999765
No 213
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.9e-35 Score=228.15 Aligned_cols=138 Identities=25% Similarity=0.375 Sum_probs=100.3
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCcc--C---CcceEEECCeec-----------ceeeeeecCcccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLR--L---DHGSISLSARTV-----------RDIGYMPQVGLMR 67 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~--~---~~G~i~~~g~~~-----------~~i~~~~q~~~~~ 67 (149)
.+++++||+|++||+++|+||||||||||+++|+|+++ | ++|+|+++|+++ +.++|++|++.++
T Consensus 26 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~ 105 (259)
T PRK14274 26 HALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKGNPF 105 (259)
T ss_pred eeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhhceEEEecCCccc
Confidence 47999999999999999999999999999999999987 3 589999999764 2489999985332
Q ss_pred cCcccccCChhHHHhhc----ccCch---HHHHHHHhhhhHHH-----HhhcCCCCCChhHHHHHHHHHHHhcCCCEEEE
Q psy10767 68 SGALLAEDSPSYLLEYY----NCSTL---EDVFLYLCEQDQIL-----FSLVGSESAFGGQQRRVSFAVSLIHDPKILIL 135 (149)
Q Consensus 68 ~~~~~~~~~~~~~~~~~----~~~~~---~~~~~~~~~~~~~~-----~~~~~~~~~sgGqkqrv~iaral~~~p~illl 135 (149)
. .++.++..+. ..... .+.+..+++..++. ........+|+|||||++|||+|+.+|+++||
T Consensus 106 -----~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~laral~~~p~llll 179 (259)
T PRK14274 106 -----P-QSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLM 179 (259)
T ss_pred -----c-cCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 2 2444444321 11111 11222223222210 01122334699999999999999999999999
Q ss_pred cCCCCCCCcCCC
Q psy10767 136 DEPTVGLDPVLS 147 (149)
Q Consensus 136 DEPt~gLD~~~~ 147 (149)
||||+|||+..+
T Consensus 180 DEPt~~LD~~~~ 191 (259)
T PRK14274 180 DEPTSALDPVST 191 (259)
T ss_pred cCCcccCCHHHH
Confidence 999999999765
No 214
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.4e-35 Score=226.45 Aligned_cols=138 Identities=26% Similarity=0.389 Sum_probs=100.4
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccC-----CcceEEECCeec-----------ceeeeeecCcccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRL-----DHGSISLSARTV-----------RDIGYMPQVGLMR 67 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~-----~~G~i~~~g~~~-----------~~i~~~~q~~~~~ 67 (149)
++++++||++++||+++|+||||||||||+++|+|+++| ++|+|.++|.++ +.++|++|++.+
T Consensus 17 ~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~- 95 (250)
T PRK14262 17 KAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTP- 95 (250)
T ss_pred eeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhEEEEecCCcc-
Confidence 579999999999999999999999999999999999874 899999999654 249999998533
Q ss_pred cCcccccCChhHHHhhc----ccCc---hHHHHHHHhhhhHHH-----HhhcCCCCCChhHHHHHHHHHHHhcCCCEEEE
Q psy10767 68 SGALLAEDSPSYLLEYY----NCST---LEDVFLYLCEQDQIL-----FSLVGSESAFGGQQRRVSFAVSLIHDPKILIL 135 (149)
Q Consensus 68 ~~~~~~~~~~~~~~~~~----~~~~---~~~~~~~~~~~~~~~-----~~~~~~~~~sgGqkqrv~iaral~~~p~illl 135 (149)
+. .++.++..+. .... .++.....++..++. ........+|+|||||++|||||+.+|+++||
T Consensus 96 ----~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al~~~p~llll 170 (250)
T PRK14262 96 ----FP-MSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILL 170 (250)
T ss_pred ----Cc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHHhCCCCEEEE
Confidence 22 3444444321 1111 112222223222210 01122334699999999999999999999999
Q ss_pred cCCCCCCCcCCC
Q psy10767 136 DEPTVGLDPVLS 147 (149)
Q Consensus 136 DEPt~gLD~~~~ 147 (149)
||||++||+..+
T Consensus 171 DEP~~~LD~~~~ 182 (250)
T PRK14262 171 DEPTSALDPIAT 182 (250)
T ss_pred eCCccccCHHHH
Confidence 999999998764
No 215
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=3.9e-35 Score=247.03 Aligned_cols=138 Identities=25% Similarity=0.385 Sum_probs=105.7
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeecc---------eeeeeecCcccccCccccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVR---------DIGYMPQVGLMRSGALLAE 74 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~~---------~i~~~~q~~~~~~~~~~~~ 74 (149)
++++|+||++++|+.++|+||||||||||+|+|+|+++|++|+|.++|.+++ .++|++|++.++ .
T Consensus 336 ~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf------~ 409 (529)
T TIGR02857 336 PALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLF------A 409 (529)
T ss_pred ccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEEEcCCCccc------C
Confidence 5899999999999999999999999999999999999999999999998762 599999995433 2
Q ss_pred CChhHHHhhcccCchHHHHHHHhhhhHH----------HHhhcC--CCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCC
Q psy10767 75 DSPSYLLEYYNCSTLEDVFLYLCEQDQI----------LFSLVG--SESAFGGQQRRVSFAVSLIHDPKILILDEPTVGL 142 (149)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~--~~~~sgGqkqrv~iaral~~~p~illlDEPt~gL 142 (149)
.++.+|..+......++....+++..+. .+..++ ...+|||||||++||||++++|+++||||||++|
T Consensus 410 ~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ililDE~ts~l 489 (529)
T TIGR02857 410 GTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHL 489 (529)
T ss_pred cCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCCEEEEeCccccc
Confidence 4566666553222122222222222211 112222 2357999999999999999999999999999999
Q ss_pred CcCCC
Q psy10767 143 DPVLS 147 (149)
Q Consensus 143 D~~~~ 147 (149)
|+...
T Consensus 490 D~~~~ 494 (529)
T TIGR02857 490 DAETE 494 (529)
T ss_pred CHHHH
Confidence 99754
No 216
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=4.4e-35 Score=228.50 Aligned_cols=141 Identities=26% Similarity=0.298 Sum_probs=102.0
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec------------ceeeeeecCcccccCcc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV------------RDIGYMPQVGLMRSGAL 71 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~------------~~i~~~~q~~~~~~~~~ 71 (149)
.+++|+||++.+||+++|+||||||||||+++|+|+++|++|+|.++|.++ +.++|++|++.. .+
T Consensus 26 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~---~~ 102 (268)
T PRK10419 26 TVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSIS---AV 102 (268)
T ss_pred eeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChhHHHHHHhcEEEEEcChhh---cc
Confidence 589999999999999999999999999999999999999999999999754 259999998521 11
Q ss_pred cccCChhHHHhh-----cccCc--hHHHHHHHhhhhHHH--HhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCC
Q psy10767 72 LAEDSPSYLLEY-----YNCST--LEDVFLYLCEQDQIL--FSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGL 142 (149)
Q Consensus 72 ~~~~~~~~~~~~-----~~~~~--~~~~~~~~~~~~~~~--~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gL 142 (149)
....++.++..+ ..... .......+++..++. ........+|+|||||++|||||+.+|++|||||||++|
T Consensus 103 ~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~laral~~~p~lllLDEPt~~L 182 (268)
T PRK10419 103 NPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNL 182 (268)
T ss_pred CCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHHHHHHhcCCCEEEEeCCCccc
Confidence 122333333221 11111 112233333333321 111233346999999999999999999999999999999
Q ss_pred CcCCC
Q psy10767 143 DPVLS 147 (149)
Q Consensus 143 D~~~~ 147 (149)
|+..+
T Consensus 183 D~~~~ 187 (268)
T PRK10419 183 DLVLQ 187 (268)
T ss_pred CHHHH
Confidence 98754
No 217
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=3e-35 Score=223.58 Aligned_cols=136 Identities=24% Similarity=0.339 Sum_probs=100.4
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec---------ceeeeeecCcccccCccccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV---------RDIGYMPQVGLMRSGALLAE 74 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~---------~~i~~~~q~~~~~~~~~~~~ 74 (149)
.+++++||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++ +.++|++|++.++ .
T Consensus 28 ~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~-----~- 101 (226)
T cd03248 28 LVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLF-----A- 101 (226)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHhhEEEEecccHHH-----h-
Confidence 589999999999999999999999999999999999999999999999764 3589999985322 1
Q ss_pred CChhHHHhhccc-CchH---HH-----HHHHhhhh--HH---HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCC
Q psy10767 75 DSPSYLLEYYNC-STLE---DV-----FLYLCEQD--QI---LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTV 140 (149)
Q Consensus 75 ~~~~~~~~~~~~-~~~~---~~-----~~~~~~~~--~~---~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~ 140 (149)
.++.++..+... .... .. ...+++.+ ++ .... ...+|+|||||++|||||+.+|+++||||||+
T Consensus 102 ~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~--~~~LSgG~~qrv~laral~~~p~llllDEPt~ 179 (226)
T cd03248 102 RSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEK--GSQLSGGQKQRVAIARALIRNPQVLILDEATS 179 (226)
T ss_pred hhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcC--CCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 244444432111 0011 00 11112222 11 1222 33469999999999999999999999999999
Q ss_pred CCCcCCC
Q psy10767 141 GLDPVLS 147 (149)
Q Consensus 141 gLD~~~~ 147 (149)
+||+..+
T Consensus 180 ~LD~~~~ 186 (226)
T cd03248 180 ALDAESE 186 (226)
T ss_pred cCCHHHH
Confidence 9999765
No 218
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.5e-35 Score=225.89 Aligned_cols=138 Identities=30% Similarity=0.347 Sum_probs=100.0
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCc--cC---CcceEEECCeec-----------ceeeeeecCcccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRL--RL---DHGSISLSARTV-----------RDIGYMPQVGLMR 67 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~--~~---~~G~i~~~g~~~-----------~~i~~~~q~~~~~ 67 (149)
.+++++||++.+||+++|+||||||||||+++|+|+. .| ++|+|.++|+++ +.++|++|++.+
T Consensus 19 ~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~- 97 (252)
T PRK14239 19 KALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNP- 97 (252)
T ss_pred eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhhhhcEEEEecCCcc-
Confidence 4789999999999999999999999999999999985 36 489999999764 249999998532
Q ss_pred cCcccccCChhHHHhhc----ccCc---hHHHHHHHhhhhHH----H-HhhcCCCCCChhHHHHHHHHHHHhcCCCEEEE
Q psy10767 68 SGALLAEDSPSYLLEYY----NCST---LEDVFLYLCEQDQI----L-FSLVGSESAFGGQQRRVSFAVSLIHDPKILIL 135 (149)
Q Consensus 68 ~~~~~~~~~~~~~~~~~----~~~~---~~~~~~~~~~~~~~----~-~~~~~~~~~sgGqkqrv~iaral~~~p~illl 135 (149)
+. .++.++..+. .... .......+++..+. . ........+|+|||||++|||||+.+|++|||
T Consensus 98 ----~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llll 172 (252)
T PRK14239 98 ----FP-MSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILL 172 (252)
T ss_pred ----Cc-CcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 22 3444444321 1111 11222222322221 0 11122335699999999999999999999999
Q ss_pred cCCCCCCCcCCC
Q psy10767 136 DEPTVGLDPVLS 147 (149)
Q Consensus 136 DEPt~gLD~~~~ 147 (149)
||||+|||+..+
T Consensus 173 DEPt~~LD~~~~ 184 (252)
T PRK14239 173 DEPTSALDPISA 184 (252)
T ss_pred cCCccccCHHHH
Confidence 999999998764
No 219
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.2e-35 Score=225.13 Aligned_cols=137 Identities=30% Similarity=0.357 Sum_probs=100.2
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCC-----cceEEECCeec-----------ceeeeeecCcccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLD-----HGSISLSARTV-----------RDIGYMPQVGLMR 67 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~-----~G~i~~~g~~~-----------~~i~~~~q~~~~~ 67 (149)
.+++|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++ +.++|++|++.
T Consensus 18 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~-- 95 (252)
T PRK14272 18 QAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPN-- 95 (252)
T ss_pred EeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhceeEEEeccCc--
Confidence 5799999999999999999999999999999999999874 89999999764 24899999843
Q ss_pred cCcccccCChhHHHhhc----ccCch---HHHHHHHhhhhH-------HHHhhcCCCCCChhHHHHHHHHHHHhcCCCEE
Q psy10767 68 SGALLAEDSPSYLLEYY----NCSTL---EDVFLYLCEQDQ-------ILFSLVGSESAFGGQQRRVSFAVSLIHDPKIL 133 (149)
Q Consensus 68 ~~~~~~~~~~~~~~~~~----~~~~~---~~~~~~~~~~~~-------~~~~~~~~~~~sgGqkqrv~iaral~~~p~il 133 (149)
++...++.++..+. ..... .+.+....+..+ ..... ...+|+|||||++|||||+.+|+++
T Consensus 96 ---~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--~~~LS~G~~qrv~laral~~~p~ll 170 (252)
T PRK14272 96 ---PFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTP--ATGLSGGQQQRLCIARALAVEPEIL 170 (252)
T ss_pred ---cCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCC--cccCCHHHHHHHHHHHHHhcCCCEE
Confidence 23333444444321 11111 111222111111 11222 2346999999999999999999999
Q ss_pred EEcCCCCCCCcCCC
Q psy10767 134 ILDEPTVGLDPVLS 147 (149)
Q Consensus 134 llDEPt~gLD~~~~ 147 (149)
||||||++||+..+
T Consensus 171 llDEP~~~LD~~~~ 184 (252)
T PRK14272 171 LMDEPTSALDPAST 184 (252)
T ss_pred EEeCCCccCCHHHH
Confidence 99999999999765
No 220
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.5e-35 Score=226.67 Aligned_cols=138 Identities=25% Similarity=0.345 Sum_probs=100.0
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCcc-----CCcceEEECCeec-----------ceeeeeecCcccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLR-----LDHGSISLSARTV-----------RDIGYMPQVGLMR 67 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~-----~~~G~i~~~g~~~-----------~~i~~~~q~~~~~ 67 (149)
++++|+||++.+||+++|+|+||||||||+++|+|+.+ |++|+|.++|+++ +.++|+||++.++
T Consensus 19 ~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~ 98 (251)
T PRK14244 19 QILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNPF 98 (251)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEecCcccc
Confidence 47999999999999999999999999999999999986 4699999999764 2489999985332
Q ss_pred cCcccccCChhHHHhhc----ccC-c---hHHHHHHHhhhhHHHH-----hhcCCCCCChhHHHHHHHHHHHhcCCCEEE
Q psy10767 68 SGALLAEDSPSYLLEYY----NCS-T---LEDVFLYLCEQDQILF-----SLVGSESAFGGQQRRVSFAVSLIHDPKILI 134 (149)
Q Consensus 68 ~~~~~~~~~~~~~~~~~----~~~-~---~~~~~~~~~~~~~~~~-----~~~~~~~~sgGqkqrv~iaral~~~p~ill 134 (149)
.. ++.++..+. ... . .......+++.+++.. .......+|+|||||++|||||+.+|+++|
T Consensus 99 -----~~-tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lll 172 (251)
T PRK14244 99 -----PK-SIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLL 172 (251)
T ss_pred -----cC-CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 22 344443321 110 1 1122223333333211 011223469999999999999999999999
Q ss_pred EcCCCCCCCcCCC
Q psy10767 135 LDEPTVGLDPVLS 147 (149)
Q Consensus 135 lDEPt~gLD~~~~ 147 (149)
|||||++||+..+
T Consensus 173 lDEPt~~LD~~~~ 185 (251)
T PRK14244 173 MDEPCSALDPVAT 185 (251)
T ss_pred EeCCCccCCHHHH
Confidence 9999999999764
No 221
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-35 Score=247.11 Aligned_cols=139 Identities=19% Similarity=0.156 Sum_probs=104.1
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec----------ceeeeeecCcccccCcccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV----------RDIGYMPQVGLMRSGALLA 73 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~----------~~i~~~~q~~~~~~~~~~~ 73 (149)
.+++|+||++++||+++|+||||||||||+|+|+|+++|++|+|+++|.++ +.++|++|++. ++.
T Consensus 18 ~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~-----~~~ 92 (501)
T PRK11288 18 KALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVAIIYQELH-----LVP 92 (501)
T ss_pred EEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCEEEEEechh-----ccC
Confidence 478999999999999999999999999999999999999999999999764 24999999842 333
Q ss_pred cCChhHHHhhccc------Cch---HHHHHHHhhhhHHHH-hhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCC
Q psy10767 74 EDSPSYLLEYYNC------STL---EDVFLYLCEQDQILF-SLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLD 143 (149)
Q Consensus 74 ~~~~~~~~~~~~~------~~~---~~~~~~~~~~~~~~~-~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD 143 (149)
..++.++..+... ... .+.+..+++.+++.. ......++|||||||++|||||+.+|++|||||||++||
T Consensus 93 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD 172 (501)
T PRK11288 93 EMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLS 172 (501)
T ss_pred CCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCC
Confidence 4455555443210 011 122333333333311 111223469999999999999999999999999999999
Q ss_pred cCCC
Q psy10767 144 PVLS 147 (149)
Q Consensus 144 ~~~~ 147 (149)
+..+
T Consensus 173 ~~~~ 176 (501)
T PRK11288 173 AREI 176 (501)
T ss_pred HHHH
Confidence 9764
No 222
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=3.8e-35 Score=249.56 Aligned_cols=138 Identities=29% Similarity=0.406 Sum_probs=106.2
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeecc---------eeeeeecCcccccCccccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVR---------DIGYMPQVGLMRSGALLAE 74 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~~---------~i~~~~q~~~~~~~~~~~~ 74 (149)
++++|+||++++||.++|+||||||||||+++|+|+++|++|+|.++|.+++ .|+|++|++.++.
T Consensus 354 ~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~------ 427 (574)
T PRK11160 354 PVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFS------ 427 (574)
T ss_pred cceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhheeEEcccchhhc------
Confidence 5899999999999999999999999999999999999999999999998763 4899999954432
Q ss_pred CChhHHHhhcccCchHHHHHHHhhhhHH---HH------hhcC--CCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCC
Q psy10767 75 DSPSYLLEYYNCSTLEDVFLYLCEQDQI---LF------SLVG--SESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLD 143 (149)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~------~~~~--~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD 143 (149)
.++.+|..+......++....+++..+. .. ..++ ...+|||||||++||||++++|+++||||||++||
T Consensus 428 ~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~~~ililDE~ts~lD 507 (574)
T PRK11160 428 ATLRDNLLLAAPNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLD 507 (574)
T ss_pred ccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 3556666553222223333333333222 11 1111 23479999999999999999999999999999999
Q ss_pred cCCC
Q psy10767 144 PVLS 147 (149)
Q Consensus 144 ~~~~ 147 (149)
+...
T Consensus 508 ~~t~ 511 (574)
T PRK11160 508 AETE 511 (574)
T ss_pred HHHH
Confidence 8754
No 223
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=100.00 E-value=4.7e-35 Score=225.19 Aligned_cols=139 Identities=21% Similarity=0.296 Sum_probs=96.5
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCc--cCCcceEEECCeec----------ceeeeeecCcccccCcc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRL--RLDHGSISLSARTV----------RDIGYMPQVGLMRSGAL 71 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~--~~~~G~i~~~g~~~----------~~i~~~~q~~~~~~~~~ 71 (149)
++++++||++++|++++|+||||||||||+++|+|+. +|++|+|.++|.++ ..++|++|++.....
T Consensus 15 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~-- 92 (248)
T PRK09580 15 AILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGIFMAFQYPVEIPG-- 92 (248)
T ss_pred eeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcceEEEecCchhccc--
Confidence 4799999999999999999999999999999999995 69999999999754 248999998532211
Q ss_pred cccCChhHHHh-------hccc-C--c---hHHHHHHHhhhhHHH---HhhcCCCCCChhHHHHHHHHHHHhcCCCEEEE
Q psy10767 72 LAEDSPSYLLE-------YYNC-S--T---LEDVFLYLCEQDQIL---FSLVGSESAFGGQQRRVSFAVSLIHDPKILIL 135 (149)
Q Consensus 72 ~~~~~~~~~~~-------~~~~-~--~---~~~~~~~~~~~~~~~---~~~~~~~~~sgGqkqrv~iaral~~~p~illl 135 (149)
.+...+.. .... . . ........++..++. ........+|+|||||++||||++.+|++|||
T Consensus 93 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illL 169 (248)
T PRK09580 93 ---VSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCIL 169 (248)
T ss_pred ---hhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 11111110 0000 0 0 011122222222211 01111124699999999999999999999999
Q ss_pred cCCCCCCCcCCC
Q psy10767 136 DEPTVGLDPVLS 147 (149)
Q Consensus 136 DEPt~gLD~~~~ 147 (149)
||||++||+..+
T Consensus 170 DEPt~~LD~~~~ 181 (248)
T PRK09580 170 DESDSGLDIDAL 181 (248)
T ss_pred eCCCccCCHHHH
Confidence 999999999764
No 224
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-35 Score=247.30 Aligned_cols=141 Identities=18% Similarity=0.272 Sum_probs=102.1
Q ss_pred ceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec----------ceeeeeecCcccccCccccc
Q psy10767 5 SASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV----------RDIGYMPQVGLMRSGALLAE 74 (149)
Q Consensus 5 ~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~----------~~i~~~~q~~~~~~~~~~~~ 74 (149)
+++|+||++.+||+++|+||||||||||+|+|+|+++|++|+|+++|.++ +.++|+||+... ..+++.
T Consensus 278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~--~~~~~~ 355 (510)
T PRK09700 278 KVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRD--NGFFPN 355 (510)
T ss_pred cccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCcEEccCcccc--CCCcCC
Confidence 68999999999999999999999999999999999999999999999754 248999996310 112233
Q ss_pred CChhHHHhhcc------------c-Cch--HHHHHHHhhhhHHH-H-hhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcC
Q psy10767 75 DSPSYLLEYYN------------C-STL--EDVFLYLCEQDQIL-F-SLVGSESAFGGQQRRVSFAVSLIHDPKILILDE 137 (149)
Q Consensus 75 ~~~~~~~~~~~------------~-~~~--~~~~~~~~~~~~~~-~-~~~~~~~~sgGqkqrv~iaral~~~p~illlDE 137 (149)
.++.++..+.. . ... ...+.++++.+++. . .......|||||||||+|||||+.+|++|||||
T Consensus 356 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDE 435 (510)
T PRK09700 356 FSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDE 435 (510)
T ss_pred CcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHHHHHHHhcCCCEEEECC
Confidence 44444433210 0 011 11223333443331 1 112223569999999999999999999999999
Q ss_pred CCCCCCcCCC
Q psy10767 138 PTVGLDPVLS 147 (149)
Q Consensus 138 Pt~gLD~~~~ 147 (149)
||++||+..+
T Consensus 436 Pt~~LD~~~~ 445 (510)
T PRK09700 436 PTRGIDVGAK 445 (510)
T ss_pred CCCCcCHHHH
Confidence 9999999765
No 225
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=3.8e-35 Score=249.01 Aligned_cols=137 Identities=24% Similarity=0.344 Sum_probs=107.6
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec---------ceeeeeecCcccccCccccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV---------RDIGYMPQVGLMRSGALLAE 74 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~---------~~i~~~~q~~~~~~~~~~~~ 74 (149)
++++|+||++++||.+||+|||||||||+++.|+|+++|++|+|.+||.++ +.|++|||++.+ +.
T Consensus 343 ~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~L-----F~- 416 (567)
T COG1132 343 PVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLL-----FS- 416 (567)
T ss_pred ccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEEccccee-----ec-
Confidence 689999999999999999999999999999999999999999999999887 359999998533 33
Q ss_pred CChhHHHhhcccCchHHHHHHHhhhhHH----------HHhhcCC--CCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCC
Q psy10767 75 DSPSYLLEYYNCSTLEDVFLYLCEQDQI----------LFSLVGS--ESAFGGQQRRVSFAVSLIHDPKILILDEPTVGL 142 (149)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~--~~~sgGqkqrv~iaral~~~p~illlDEPt~gL 142 (149)
.++.+|..+......++...++++.... .+..++. ..+|||||||++||||++++|+|++||||||+|
T Consensus 417 ~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ILILDEaTSal 496 (567)
T COG1132 417 GTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDEATSAL 496 (567)
T ss_pred ccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEecccccc
Confidence 5667777665332223333333322211 1223332 347999999999999999999999999999999
Q ss_pred CcCC
Q psy10767 143 DPVL 146 (149)
Q Consensus 143 D~~~ 146 (149)
|+.+
T Consensus 497 D~~t 500 (567)
T COG1132 497 DTET 500 (567)
T ss_pred CHHh
Confidence 9875
No 226
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=3.1e-35 Score=246.32 Aligned_cols=139 Identities=24% Similarity=0.170 Sum_probs=103.3
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccC--CcceEEECCeec----------ceeeeeecCcccccCcc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRL--DHGSISLSARTV----------RDIGYMPQVGLMRSGAL 71 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~--~~G~i~~~g~~~----------~~i~~~~q~~~~~~~~~ 71 (149)
++++|+||++++||+++|+||||||||||+++|+|+++| ++|+|+++|+++ +.++|+||++. +
T Consensus 15 ~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~-----~ 89 (500)
T TIGR02633 15 KALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIVIIHQELT-----L 89 (500)
T ss_pred EeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCEEEEeeccc-----c
Confidence 479999999999999999999999999999999999986 799999999764 24899999843 3
Q ss_pred cccCChhHHHhhccc-------Cch---HHHHHHHhhhhHHHHh--hcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCC
Q psy10767 72 LAEDSPSYLLEYYNC-------STL---EDVFLYLCEQDQILFS--LVGSESAFGGQQRRVSFAVSLIHDPKILILDEPT 139 (149)
Q Consensus 72 ~~~~~~~~~~~~~~~-------~~~---~~~~~~~~~~~~~~~~--~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt 139 (149)
+...++.++..+... ... ...+..+++.+++... ......+||||||||+|||||+.+|++|||||||
T Consensus 90 ~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~p~lllLDEPt 169 (500)
T TIGR02633 90 VPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPS 169 (500)
T ss_pred CCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Confidence 334455555433110 011 1223333343333111 1122346999999999999999999999999999
Q ss_pred CCCCcCCC
Q psy10767 140 VGLDPVLS 147 (149)
Q Consensus 140 ~gLD~~~~ 147 (149)
+|||+..+
T Consensus 170 ~~LD~~~~ 177 (500)
T TIGR02633 170 SSLTEKET 177 (500)
T ss_pred CCCCHHHH
Confidence 99999765
No 227
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.5e-35 Score=224.44 Aligned_cols=138 Identities=27% Similarity=0.393 Sum_probs=100.0
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccC-----CcceEEECCeec----------ceeeeeecCccccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRL-----DHGSISLSARTV----------RDIGYMPQVGLMRS 68 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~-----~~G~i~~~g~~~----------~~i~~~~q~~~~~~ 68 (149)
.+++++||++++||+++|+||||||||||+++|+|+++| ++|+|.++|.++ +.++|++|++.+
T Consensus 17 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q~~~~-- 94 (249)
T PRK14253 17 QALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVGMVFQKPNP-- 94 (249)
T ss_pred eeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHHhheeEEecCCCc--
Confidence 479999999999999999999999999999999999986 599999999764 248999998532
Q ss_pred CcccccCChhHHHhhc----ccCc---hHHHHHHHhhhhHH-----HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEc
Q psy10767 69 GALLAEDSPSYLLEYY----NCST---LEDVFLYLCEQDQI-----LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILD 136 (149)
Q Consensus 69 ~~~~~~~~~~~~~~~~----~~~~---~~~~~~~~~~~~~~-----~~~~~~~~~~sgGqkqrv~iaral~~~p~illlD 136 (149)
+. .++.++..+. .... ..+.+....+..++ .........+|+|||||++|||||+.+|+++|||
T Consensus 95 ---~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD 170 (249)
T PRK14253 95 ---FP-MSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMD 170 (249)
T ss_pred ---Cc-ccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 22 3444444321 1111 11222222222221 0111223356999999999999999999999999
Q ss_pred CCCCCCCcCCC
Q psy10767 137 EPTVGLDPVLS 147 (149)
Q Consensus 137 EPt~gLD~~~~ 147 (149)
|||+|||+..+
T Consensus 171 EP~~~LD~~~~ 181 (249)
T PRK14253 171 EPTSALDPIAT 181 (249)
T ss_pred CCCccCCHHHH
Confidence 99999999764
No 228
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.3e-35 Score=250.79 Aligned_cols=141 Identities=21% Similarity=0.291 Sum_probs=105.4
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec------------ceeeeeecCcccccCcc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV------------RDIGYMPQVGLMRSGAL 71 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~------------~~i~~~~q~~~~~~~~~ 71 (149)
.+++++||+|.+||++||+||||||||||+|+|+|+.+|++|+|+++|.++ +.|+|+||++. ..+
T Consensus 338 ~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~---~~l 414 (623)
T PRK10261 338 HAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPY---ASL 414 (623)
T ss_pred EEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCch---hhc
Confidence 479999999999999999999999999999999999999999999999754 25899999842 123
Q ss_pred cccCChhHHHhh----cccCc---hHHHHHHHhhhhHHH--HhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCC
Q psy10767 72 LAEDSPSYLLEY----YNCST---LEDVFLYLCEQDQIL--FSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGL 142 (149)
Q Consensus 72 ~~~~~~~~~~~~----~~~~~---~~~~~~~~~~~~~~~--~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gL 142 (149)
.+..++.++... ..... ..+.+.++++.+++. ........|||||||||+|||||+.+|++|||||||++|
T Consensus 415 ~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~llllDEPts~L 494 (623)
T PRK10261 415 DPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSAL 494 (623)
T ss_pred CCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 334455544432 11111 122333444444431 112233456999999999999999999999999999999
Q ss_pred CcCCC
Q psy10767 143 DPVLS 147 (149)
Q Consensus 143 D~~~~ 147 (149)
|+..+
T Consensus 495 D~~~~ 499 (623)
T PRK10261 495 DVSIR 499 (623)
T ss_pred CHHHH
Confidence 99765
No 229
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=100.00 E-value=3.9e-35 Score=209.90 Aligned_cols=93 Identities=34% Similarity=0.543 Sum_probs=87.1
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeecceeeeeecCcccccCcccccCChhHHHhh
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAEDSPSYLLEY 83 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~ 83 (149)
.+++++||++++||+++|+||||||||||+++|+|+++|++|+|+++|. ..++|++|
T Consensus 14 ~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~--~~i~~~~~--------------------- 70 (144)
T cd03221 14 LLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST--VKIGYFEQ--------------------- 70 (144)
T ss_pred eEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe--EEEEEEcc---------------------
Confidence 5799999999999999999999999999999999999999999999985 46788777
Q ss_pred cccCchHHHHHHHhhhhHHHHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCCC
Q psy10767 84 YNCSTLEDVFLYLCEQDQILFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~~ 147 (149)
+|+||+||++||||++.+|+++||||||++||+..+
T Consensus 71 ----------------------------lS~G~~~rv~laral~~~p~illlDEP~~~LD~~~~ 106 (144)
T cd03221 71 ----------------------------LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESI 106 (144)
T ss_pred ----------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHH
Confidence 499999999999999999999999999999998764
No 230
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=6.4e-35 Score=253.41 Aligned_cols=137 Identities=26% Similarity=0.363 Sum_probs=105.6
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec---------ceeeeeecCcccccCccccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV---------RDIGYMPQVGLMRSGALLAE 74 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~---------~~i~~~~q~~~~~~~~~~~~ 74 (149)
++++|+||++++||.++|+||||||||||+++|+|+++|++|+|.++|+++ +.|+|++|++.++.
T Consensus 495 ~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~------ 568 (711)
T TIGR00958 495 PVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFS------ 568 (711)
T ss_pred ccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhceEEecCccccc------
Confidence 589999999999999999999999999999999999999999999999886 35999999965443
Q ss_pred CChhHHHhhcccCchHHHHHHHhhhhHH----------HHhhcCC--CCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCC
Q psy10767 75 DSPSYLLEYYNCSTLEDVFLYLCEQDQI----------LFSLVGS--ESAFGGQQRRVSFAVSLIHDPKILILDEPTVGL 142 (149)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~--~~~sgGqkqrv~iaral~~~p~illlDEPt~gL 142 (149)
.++.+|..+......++....+++..+. .+..++. ..+|||||||++||||++++|+|+||||||++|
T Consensus 569 gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p~ILILDEpTSaL 648 (711)
T TIGR00958 569 GSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSAL 648 (711)
T ss_pred cCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEEcccccc
Confidence 4566666543222222333333322211 1112222 347999999999999999999999999999999
Q ss_pred CcCC
Q psy10767 143 DPVL 146 (149)
Q Consensus 143 D~~~ 146 (149)
|+..
T Consensus 649 D~~t 652 (711)
T TIGR00958 649 DAEC 652 (711)
T ss_pred CHHH
Confidence 9864
No 231
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-34 Score=223.92 Aligned_cols=138 Identities=28% Similarity=0.340 Sum_probs=99.3
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCcc--C---CcceEEECCeec-----------ceeeeeecCcccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLR--L---DHGSISLSARTV-----------RDIGYMPQVGLMR 67 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~--~---~~G~i~~~g~~~-----------~~i~~~~q~~~~~ 67 (149)
.+++++||++.+||+++|+|+||||||||+++|+|+.+ | ++|+|.++|.++ +.++|++|++.+
T Consensus 19 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~- 97 (252)
T PRK14255 19 EALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPNP- 97 (252)
T ss_pred eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHhcCeEEEEECCCcc-
Confidence 47999999999999999999999999999999999865 4 589999999764 248999998533
Q ss_pred cCcccccCChhHHHhhc----ccCch---HHHHHHHhhhhHH----H-HhhcCCCCCChhHHHHHHHHHHHhcCCCEEEE
Q psy10767 68 SGALLAEDSPSYLLEYY----NCSTL---EDVFLYLCEQDQI----L-FSLVGSESAFGGQQRRVSFAVSLIHDPKILIL 135 (149)
Q Consensus 68 ~~~~~~~~~~~~~~~~~----~~~~~---~~~~~~~~~~~~~----~-~~~~~~~~~sgGqkqrv~iaral~~~p~illl 135 (149)
+. .++.++..+. ..... .+.....++..+. . ........+|+|||||++||||++.+|+++||
T Consensus 98 ----~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~laral~~~p~llll 172 (252)
T PRK14255 98 ----FP-FSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILL 172 (252)
T ss_pred ----CC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 22 2444443321 11111 1122222222211 0 11122335699999999999999999999999
Q ss_pred cCCCCCCCcCCC
Q psy10767 136 DEPTVGLDPVLS 147 (149)
Q Consensus 136 DEPt~gLD~~~~ 147 (149)
||||++||+..+
T Consensus 173 DEPt~~LD~~~~ 184 (252)
T PRK14255 173 DEPTSALDPISS 184 (252)
T ss_pred cCCCccCCHHHH
Confidence 999999999765
No 232
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.1e-35 Score=225.18 Aligned_cols=138 Identities=22% Similarity=0.338 Sum_probs=99.5
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcC---ccC--CcceEEECCeec-----------ceeeeeecCcccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNR---LRL--DHGSISLSARTV-----------RDIGYMPQVGLMR 67 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~---~~~--~~G~i~~~g~~~-----------~~i~~~~q~~~~~ 67 (149)
.+++++||++++||+++|+||||||||||+++|+|+ .+| ++|+|.++|.++ +.++|+||++.++
T Consensus 17 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~ 96 (250)
T PRK14245 17 HALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNPF 96 (250)
T ss_pred eEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHHHhhheEEEecCCccC
Confidence 478999999999999999999999999999999997 454 589999999764 2489999985322
Q ss_pred cCcccccCChhHHHhhc----ccCc---hHHHHHHHhhhhHHH-----HhhcCCCCCChhHHHHHHHHHHHhcCCCEEEE
Q psy10767 68 SGALLAEDSPSYLLEYY----NCST---LEDVFLYLCEQDQIL-----FSLVGSESAFGGQQRRVSFAVSLIHDPKILIL 135 (149)
Q Consensus 68 ~~~~~~~~~~~~~~~~~----~~~~---~~~~~~~~~~~~~~~-----~~~~~~~~~sgGqkqrv~iaral~~~p~illl 135 (149)
. .++.++..+. .... ..+.+..+++..++. ........+|+|||||++|||||+.+|+++||
T Consensus 97 -----~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllL 170 (250)
T PRK14245 97 -----P-KSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLM 170 (250)
T ss_pred -----c-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 2 2444444321 1111 112223333333220 01122335699999999999999999999999
Q ss_pred cCCCCCCCcCCC
Q psy10767 136 DEPTVGLDPVLS 147 (149)
Q Consensus 136 DEPt~gLD~~~~ 147 (149)
||||+|||+..+
T Consensus 171 DEPt~~LD~~~~ 182 (250)
T PRK14245 171 DEPASALDPIST 182 (250)
T ss_pred eCCCccCCHHHH
Confidence 999999999765
No 233
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.2e-35 Score=224.59 Aligned_cols=138 Identities=25% Similarity=0.354 Sum_probs=100.2
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCC-----cceEEECCeec-----------ceeeeeecCcccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLD-----HGSISLSARTV-----------RDIGYMPQVGLMR 67 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~-----~G~i~~~g~~~-----------~~i~~~~q~~~~~ 67 (149)
.+++++||+|.+|++++|+||||||||||+++|+|+++|+ +|+|.++|.++ +.++|++|++.++
T Consensus 18 ~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~ 97 (251)
T PRK14249 18 QVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPF 97 (251)
T ss_pred eEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHHhhceEEEEecCCccC
Confidence 4789999999999999999999999999999999999987 69999998764 2499999985332
Q ss_pred cCcccccCChhHHHhhc----ccCc---hHHHHHHHhhhhHHH-----HhhcCCCCCChhHHHHHHHHHHHhcCCCEEEE
Q psy10767 68 SGALLAEDSPSYLLEYY----NCST---LEDVFLYLCEQDQIL-----FSLVGSESAFGGQQRRVSFAVSLIHDPKILIL 135 (149)
Q Consensus 68 ~~~~~~~~~~~~~~~~~----~~~~---~~~~~~~~~~~~~~~-----~~~~~~~~~sgGqkqrv~iaral~~~p~illl 135 (149)
. .++.++..+. .... ..+.+....+..++. ........+|+|||||++|||||+.+|+++||
T Consensus 98 -----~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllL 171 (251)
T PRK14249 98 -----P-KSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILM 171 (251)
T ss_pred -----c-CcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 2 2444444321 1111 112222222222210 01122334699999999999999999999999
Q ss_pred cCCCCCCCcCCC
Q psy10767 136 DEPTVGLDPVLS 147 (149)
Q Consensus 136 DEPt~gLD~~~~ 147 (149)
||||++||+..+
T Consensus 172 DEPt~~LD~~~~ 183 (251)
T PRK14249 172 DEPCSALDPVST 183 (251)
T ss_pred eCCCccCCHHHH
Confidence 999999998764
No 234
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.4e-35 Score=229.26 Aligned_cols=138 Identities=28% Similarity=0.394 Sum_probs=100.2
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCcc-----CCcceEEECCeec-----------ceeeeeecCcccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLR-----LDHGSISLSARTV-----------RDIGYMPQVGLMR 67 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~-----~~~G~i~~~g~~~-----------~~i~~~~q~~~~~ 67 (149)
.+++|+||+|.+||+++|+||||||||||+++|+|+.+ |++|+|.++|.++ +.++|++|++.+
T Consensus 53 ~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l- 131 (286)
T PRK14275 53 EAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKPNP- 131 (286)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchHHhhhcEEEECCCCCC-
Confidence 47899999999999999999999999999999999864 4999999998753 258999998532
Q ss_pred cCcccccCChhHHHhhc----ccCc---hHHHHHHHhhhhHHH-----HhhcCCCCCChhHHHHHHHHHHHhcCCCEEEE
Q psy10767 68 SGALLAEDSPSYLLEYY----NCST---LEDVFLYLCEQDQIL-----FSLVGSESAFGGQQRRVSFAVSLIHDPKILIL 135 (149)
Q Consensus 68 ~~~~~~~~~~~~~~~~~----~~~~---~~~~~~~~~~~~~~~-----~~~~~~~~~sgGqkqrv~iaral~~~p~illl 135 (149)
+. .++.++..+. .... ..+....+++..++. ........+|+|||||++|||||+.+|++|||
T Consensus 132 ----~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllL 206 (286)
T PRK14275 132 ----FP-KSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVARTLAVEPEILLL 206 (286)
T ss_pred ----Cc-cCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 22 2455554331 1111 112222333222210 11122335699999999999999999999999
Q ss_pred cCCCCCCCcCCC
Q psy10767 136 DEPTVGLDPVLS 147 (149)
Q Consensus 136 DEPt~gLD~~~~ 147 (149)
||||+|||+..+
T Consensus 207 DEPt~gLD~~~~ 218 (286)
T PRK14275 207 DEPTSALDPKAT 218 (286)
T ss_pred eCCCccCCHHHH
Confidence 999999998754
No 235
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=7.2e-35 Score=252.34 Aligned_cols=138 Identities=27% Similarity=0.377 Sum_probs=105.9
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec---------ceeeeeecCcccccCccccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV---------RDIGYMPQVGLMRSGALLAE 74 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~---------~~i~~~~q~~~~~~~~~~~~ 74 (149)
++++|+||++++||.+||+|+||||||||+++|+|+++|++|+|.++|.++ +.++|++|++.++.
T Consensus 479 ~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~------ 552 (694)
T TIGR03375 479 PALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFY------ 552 (694)
T ss_pred cceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccEEECCChhhhh------
Confidence 589999999999999999999999999999999999999999999999876 35999999954433
Q ss_pred CChhHHHhhcccCchHHHHHHHhhhhHH---H-------HhhcCC--CCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCC
Q psy10767 75 DSPSYLLEYYNCSTLEDVFLYLCEQDQI---L-------FSLVGS--ESAFGGQQRRVSFAVSLIHDPKILILDEPTVGL 142 (149)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-------~~~~~~--~~~sgGqkqrv~iaral~~~p~illlDEPt~gL 142 (149)
.++.+|..+......++....+++..+. . +..++. ..+|||||||++||||++++|+++||||||++|
T Consensus 553 ~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~iliLDE~Ts~L 632 (694)
T TIGR03375 553 GTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAM 632 (694)
T ss_pred hhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCC
Confidence 3566666554322222323233222221 1 111111 247999999999999999999999999999999
Q ss_pred CcCCC
Q psy10767 143 DPVLS 147 (149)
Q Consensus 143 D~~~~ 147 (149)
|+...
T Consensus 633 D~~te 637 (694)
T TIGR03375 633 DNRSE 637 (694)
T ss_pred CHHHH
Confidence 98753
No 236
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=9.1e-35 Score=247.62 Aligned_cols=138 Identities=24% Similarity=0.327 Sum_probs=105.5
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec---------ceeeeeecCcccccCccccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV---------RDIGYMPQVGLMRSGALLAE 74 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~---------~~i~~~~q~~~~~~~~~~~~ 74 (149)
++++|+||++++||.++|+|+||||||||+++|+|+++|++|+|.++|.++ +.|+|+||++.++.
T Consensus 349 ~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~------ 422 (588)
T PRK13657 349 QGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFN------ 422 (588)
T ss_pred ceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEEEecCccccc------
Confidence 579999999999999999999999999999999999999999999999876 35999999954433
Q ss_pred CChhHHHhhcccCchHHHHHHHhhhhHH----------HHhhcCC--CCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCC
Q psy10767 75 DSPSYLLEYYNCSTLEDVFLYLCEQDQI----------LFSLVGS--ESAFGGQQRRVSFAVSLIHDPKILILDEPTVGL 142 (149)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~--~~~sgGqkqrv~iaral~~~p~illlDEPt~gL 142 (149)
.++.+|..+......++....+++..+. .+..++. ..+|||||||++||||++++|+++||||||++|
T Consensus 423 ~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~iliLDEpts~L 502 (588)
T PRK13657 423 RSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSAL 502 (588)
T ss_pred ccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCC
Confidence 3556666554222222222222222221 1122222 247999999999999999999999999999999
Q ss_pred CcCCC
Q psy10767 143 DPVLS 147 (149)
Q Consensus 143 D~~~~ 147 (149)
|+...
T Consensus 503 D~~t~ 507 (588)
T PRK13657 503 DVETE 507 (588)
T ss_pred CHHHH
Confidence 98753
No 237
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.1e-35 Score=225.49 Aligned_cols=138 Identities=25% Similarity=0.381 Sum_probs=100.3
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccC-----CcceEEECCeec-----------ceeeeeecCcccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRL-----DHGSISLSARTV-----------RDIGYMPQVGLMR 67 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~-----~~G~i~~~g~~~-----------~~i~~~~q~~~~~ 67 (149)
.+++|+||++.+||+++|+|+||||||||+++|+|+++| ++|+|.++|+++ ..++|++|++.+
T Consensus 21 ~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l- 99 (259)
T PRK14260 21 KAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNP- 99 (259)
T ss_pred EeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhhhhheEEEeccccc-
Confidence 478999999999999999999999999999999999885 489999999764 248999998533
Q ss_pred cCcccccCChhHHHhhc----cc-Cc--hHHHHHHHhhhhHHH-----HhhcCCCCCChhHHHHHHHHHHHhcCCCEEEE
Q psy10767 68 SGALLAEDSPSYLLEYY----NC-ST--LEDVFLYLCEQDQIL-----FSLVGSESAFGGQQRRVSFAVSLIHDPKILIL 135 (149)
Q Consensus 68 ~~~~~~~~~~~~~~~~~----~~-~~--~~~~~~~~~~~~~~~-----~~~~~~~~~sgGqkqrv~iaral~~~p~illl 135 (149)
+. .++.++..+. .. .. ..+.....++..++. ........+|+|||||++|||||+.+|+++||
T Consensus 100 ----~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllL 174 (259)
T PRK14260 100 ----FP-MSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLM 174 (259)
T ss_pred ----CC-ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 22 3444444321 10 10 112222333322210 11112235699999999999999999999999
Q ss_pred cCCCCCCCcCCC
Q psy10767 136 DEPTVGLDPVLS 147 (149)
Q Consensus 136 DEPt~gLD~~~~ 147 (149)
||||+|||+..+
T Consensus 175 DEPt~~LD~~~~ 186 (259)
T PRK14260 175 DEPCSALDPIAT 186 (259)
T ss_pred cCCCccCCHHHH
Confidence 999999998754
No 238
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=6e-35 Score=253.28 Aligned_cols=138 Identities=30% Similarity=0.364 Sum_probs=105.6
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec---------ceeeeeecCcccccCccccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV---------RDIGYMPQVGLMRSGALLAE 74 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~---------~~i~~~~q~~~~~~~~~~~~ 74 (149)
++++|+||++++|+.+||+||||||||||+++|+|+++|++|+|.++|.++ +.|+|++|++.++.
T Consensus 488 ~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~------ 561 (708)
T TIGR01193 488 NILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFS------ 561 (708)
T ss_pred cceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEEEecCceehh------
Confidence 579999999999999999999999999999999999999999999999876 35999999964433
Q ss_pred CChhHHHhhcc-cCchHHHHHHHhhhhHH----------HHhhcC--CCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCC
Q psy10767 75 DSPSYLLEYYN-CSTLEDVFLYLCEQDQI----------LFSLVG--SESAFGGQQRRVSFAVSLIHDPKILILDEPTVG 141 (149)
Q Consensus 75 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----------~~~~~~--~~~~sgGqkqrv~iaral~~~p~illlDEPt~g 141 (149)
.++.+|..+.. ....++...++++..+. .+..++ ...+|||||||++||||++++|++|||||||++
T Consensus 562 gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~iliLDE~Ts~ 641 (708)
T TIGR01193 562 GSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSN 641 (708)
T ss_pred HHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCcccc
Confidence 35566665531 12122222222222211 112222 235799999999999999999999999999999
Q ss_pred CCcCCC
Q psy10767 142 LDPVLS 147 (149)
Q Consensus 142 LD~~~~ 147 (149)
||+...
T Consensus 642 LD~~te 647 (708)
T TIGR01193 642 LDTITE 647 (708)
T ss_pred CCHHHH
Confidence 998653
No 239
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.2e-35 Score=226.18 Aligned_cols=138 Identities=24% Similarity=0.381 Sum_probs=99.6
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCcc-----CCcceEEECCeec-----------ceeeeeecCcccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLR-----LDHGSISLSARTV-----------RDIGYMPQVGLMR 67 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~-----~~~G~i~~~g~~~-----------~~i~~~~q~~~~~ 67 (149)
++++|+||++++||+++|+|+||||||||+++|+|+++ |++|+|+++|.++ +.++|++|++.+
T Consensus 24 ~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~- 102 (264)
T PRK14243 24 LAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRRRIGMVFQKPNP- 102 (264)
T ss_pred EEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHHHhhhEEEEccCCcc-
Confidence 57999999999999999999999999999999999976 3799999999764 248999998432
Q ss_pred cCcccccCChhHHHhhc----ccC-chHHHHHHHhhhhHHH---H--hhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcC
Q psy10767 68 SGALLAEDSPSYLLEYY----NCS-TLEDVFLYLCEQDQIL---F--SLVGSESAFGGQQRRVSFAVSLIHDPKILILDE 137 (149)
Q Consensus 68 ~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~---~--~~~~~~~~sgGqkqrv~iaral~~~p~illlDE 137 (149)
+. .++.++..+. ... ...+....+.+..+.. . .......+|+|||||++|||||+.+|++|||||
T Consensus 103 ----~~-~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDE 177 (264)
T PRK14243 103 ----FP-KSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDE 177 (264)
T ss_pred ----cc-ccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 22 2444444321 111 1112222222222211 1 111233469999999999999999999999999
Q ss_pred CCCCCCcCCC
Q psy10767 138 PTVGLDPVLS 147 (149)
Q Consensus 138 Pt~gLD~~~~ 147 (149)
||++||+..+
T Consensus 178 Pt~~LD~~~~ 187 (264)
T PRK14243 178 PCSALDPIST 187 (264)
T ss_pred CCccCCHHHH
Confidence 9999999765
No 240
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.5e-35 Score=250.70 Aligned_cols=141 Identities=21% Similarity=0.217 Sum_probs=103.7
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec-----------------------ceeeee
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV-----------------------RDIGYM 60 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~-----------------------~~i~~~ 60 (149)
++++|+||++.+||++||+||||||||||+|+|+|+++|++|+|.++|..+ +.|+|+
T Consensus 30 ~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ig~v 109 (623)
T PRK10261 30 AAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGADMAMI 109 (623)
T ss_pred eEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccccCCHHHHHHHhCCCEEEE
Confidence 589999999999999999999999999999999999999999999987421 258999
Q ss_pred ecCcccccCcccccCChhHHHhhc-----ccCc--hHHHHHHHhhhhHHH----HhhcCCCCCChhHHHHHHHHHHHhcC
Q psy10767 61 PQVGLMRSGALLAEDSPSYLLEYY-----NCST--LEDVFLYLCEQDQIL----FSLVGSESAFGGQQRRVSFAVSLIHD 129 (149)
Q Consensus 61 ~q~~~~~~~~~~~~~~~~~~~~~~-----~~~~--~~~~~~~~~~~~~~~----~~~~~~~~~sgGqkqrv~iaral~~~ 129 (149)
+|++.. .+.+..++.++..+. .... ..+.+.++++.+++. ........|||||||||+|||||+.+
T Consensus 110 ~Q~~~~---~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~LSgGq~QRv~iA~AL~~~ 186 (623)
T PRK10261 110 FQEPMT---SLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSCR 186 (623)
T ss_pred EeCchh---hcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccCCHHHHHHHHHHHHHhCC
Confidence 998420 122334455544321 1111 122334444444431 11122334699999999999999999
Q ss_pred CCEEEEcCCCCCCCcCCC
Q psy10767 130 PKILILDEPTVGLDPVLS 147 (149)
Q Consensus 130 p~illlDEPt~gLD~~~~ 147 (149)
|++|||||||++||+..+
T Consensus 187 P~lLllDEPt~~LD~~~~ 204 (623)
T PRK10261 187 PAVLIADEPTTALDVTIQ 204 (623)
T ss_pred CCEEEEeCCCCccCHHHH
Confidence 999999999999999764
No 241
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=100.00 E-value=7.7e-35 Score=218.27 Aligned_cols=115 Identities=27% Similarity=0.346 Sum_probs=92.2
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcC--ccCCcceEEECCeecc----------eeeeeecCcccccCcc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNR--LRLDHGSISLSARTVR----------DIGYMPQVGLMRSGAL 71 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~--~~~~~G~i~~~g~~~~----------~i~~~~q~~~~~~~~~ 71 (149)
.+++|+||++.+||+++|+|+||||||||+++|+|+ ++|++|+|.++|+++. .++|++|++..
T Consensus 14 ~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~----- 88 (200)
T cd03217 14 EILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPE----- 88 (200)
T ss_pred EeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEeecChhh-----
Confidence 478999999999999999999999999999999999 4799999999997651 38888887422
Q ss_pred cccCChhHHHhhcccCchHHHHHHHhhhhHHHHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCCC
Q psy10767 72 LAEDSPSYLLEYYNCSTLEDVFLYLCEQDQILFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~~ 147 (149)
++..+..++. .. . ...+|+|||||++||||++.+|+++||||||++||+..+
T Consensus 89 ~~~~~~~~~l----------------------~~-~-~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~ 140 (200)
T cd03217 89 IPGVKNADFL----------------------RY-V-NEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDAL 140 (200)
T ss_pred ccCccHHHHH----------------------hh-c-cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHH
Confidence 2221211111 01 1 124599999999999999999999999999999998754
No 242
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=5.6e-35 Score=247.66 Aligned_cols=138 Identities=27% Similarity=0.319 Sum_probs=106.6
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec---------ceeeeeecCcccccCccccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV---------RDIGYMPQVGLMRSGALLAE 74 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~---------~~i~~~~q~~~~~~~~~~~~ 74 (149)
++++|+||++++||.++|+|+||||||||+++|+|+++|++|+|.++|.++ +.++|+||++.++.
T Consensus 346 ~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~------ 419 (571)
T TIGR02203 346 PALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFN------ 419 (571)
T ss_pred ccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEccCccccc------
Confidence 579999999999999999999999999999999999999999999999876 35999999965443
Q ss_pred CChhHHHhhccc-CchHHHHHHHhhhhHH---HH-------hhcCC--CCCChhHHHHHHHHHHHhcCCCEEEEcCCCCC
Q psy10767 75 DSPSYLLEYYNC-STLEDVFLYLCEQDQI---LF-------SLVGS--ESAFGGQQRRVSFAVSLIHDPKILILDEPTVG 141 (149)
Q Consensus 75 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---~~-------~~~~~--~~~sgGqkqrv~iaral~~~p~illlDEPt~g 141 (149)
.++.+|..+... ...++...++++..++ .. ..++. ..+|||||||++||||++++|++++|||||++
T Consensus 420 ~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~illLDEpts~ 499 (571)
T TIGR02203 420 DTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSA 499 (571)
T ss_pred ccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccc
Confidence 355666654432 2223333333333222 11 11221 24799999999999999999999999999999
Q ss_pred CCcCCC
Q psy10767 142 LDPVLS 147 (149)
Q Consensus 142 LD~~~~ 147 (149)
||+...
T Consensus 500 LD~~~~ 505 (571)
T TIGR02203 500 LDNESE 505 (571)
T ss_pred CCHHHH
Confidence 998764
No 243
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.7e-35 Score=219.19 Aligned_cols=138 Identities=28% Similarity=0.346 Sum_probs=108.1
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec----ceeeeeecCcccccCcccccCChhH
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV----RDIGYMPQVGLMRSGALLAEDSPSY 79 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~----~~i~~~~q~~~~~~~~~~~~~~~~~ 79 (149)
.+++|+|++|.+||.+.++||||||||||+|+++|+.+|+.|+|.++|+.+ .+-|.|||+ ..+.++.++.+
T Consensus 19 ~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaergvVFQ~-----~~LlPWl~~~d 93 (259)
T COG4525 19 SALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVVFQN-----EALLPWLNVID 93 (259)
T ss_pred hhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCccceeEecc-----CccchhhHHHH
Confidence 378999999999999999999999999999999999999999999999876 357899998 55666776666
Q ss_pred HHhhc----ccCch--HHHHHHHhhhhHH---HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCCCC
Q psy10767 80 LLEYY----NCSTL--EDVFLYLCEQDQI---LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLSF 148 (149)
Q Consensus 80 ~~~~~----~~~~~--~~~~~~~~~~~~~---~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~~~ 148 (149)
|..+- +.... .+.+...+..+++ .++.+.. +|||||||+-|||||+.+|++|+||||+++||.-.|.
T Consensus 94 NvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~q--LSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe 169 (259)
T COG4525 94 NVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQ--LSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTRE 169 (259)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEe--ecchHHHHHHHHHHhhcCcceEeecCchhhHHHHHHH
Confidence 66542 22221 1222333333333 2333333 4999999999999999999999999999999987654
No 244
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=5.6e-35 Score=225.69 Aligned_cols=133 Identities=29% Similarity=0.346 Sum_probs=97.1
Q ss_pred ceecceEEEe-----CCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeecceeeeeecCcccccCcccccCChhH
Q psy10767 5 SASSLNTVIF-----GVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAEDSPSY 79 (149)
Q Consensus 5 ~~~~i~~~~~-----~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~~~i~~~~q~~~~~~~~~~~~~~~~~ 79 (149)
.++++++++. +||+++|+||||||||||+++|+|+++|++|+|.++|. .++|++|+... ....++.+
T Consensus 9 ~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~---~i~~~~q~~~~-----~~~~tv~e 80 (246)
T cd03237 9 TLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD---TVSYKPQYIKA-----DYEGTVRD 80 (246)
T ss_pred ccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc---eEEEecccccC-----CCCCCHHH
Confidence 4567777775 79999999999999999999999999999999999985 69999997432 22334544
Q ss_pred HHhhcc--cCchHHHHHHHhhhhHH---HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCCC
Q psy10767 80 LLEYYN--CSTLEDVFLYLCEQDQI---LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 80 ~~~~~~--~~~~~~~~~~~~~~~~~---~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~~ 147 (149)
+..... .........++++.+++ ..+... .+|||||||++|||||+.+|+++||||||++||+..+
T Consensus 81 ~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~--~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~ 151 (246)
T cd03237 81 LLSSITKDFYTHPYFKTEIAKPLQIEQILDREVP--ELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQR 151 (246)
T ss_pred HHHHHhhhccccHHHHHHHHHHcCCHHHhhCChh--hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence 443211 00111112223333322 223333 4599999999999999999999999999999999765
No 245
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=100.00 E-value=6.3e-35 Score=222.27 Aligned_cols=134 Identities=20% Similarity=0.255 Sum_probs=95.5
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeecceeeeeecCcccccCcccccCChhHHHhh
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAEDSPSYLLEY 83 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~ 83 (149)
++++|+||++++||+++|+||||||||||+++|+|+++|++|+|+++|++... ..+. ..+.+..++.++..+
T Consensus 36 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~---~~~~-----~~~~~~~tv~enl~~ 107 (224)
T cd03220 36 WALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSL---LGLG-----GGFNPELTGRENIYL 107 (224)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchh---hccc-----ccCCCCCcHHHHHHH
Confidence 48999999999999999999999999999999999999999999999976421 1111 111223344444432
Q ss_pred c----ccCch--HHHHHHHhhhhHH---HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCCC
Q psy10767 84 Y----NCSTL--EDVFLYLCEQDQI---LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 84 ~----~~~~~--~~~~~~~~~~~~~---~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~~ 147 (149)
. ..... .+....+.+..++ ..+.+ ..+|+|||||++||||++.+|+++||||||+|||+..+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~ 178 (224)
T cd03220 108 NGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPV--KTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQ 178 (224)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCh--hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence 1 11111 1222233333222 22233 34599999999999999999999999999999999754
No 246
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-34 Score=225.12 Aligned_cols=138 Identities=28% Similarity=0.368 Sum_probs=101.7
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccC-----CcceEEECCeec-----------ceeeeeecCcccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRL-----DHGSISLSARTV-----------RDIGYMPQVGLMR 67 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~-----~~G~i~~~g~~~-----------~~i~~~~q~~~~~ 67 (149)
++++|+||++++||+++|+|+||||||||+++|+|+++| ++|+|.++|+++ +.++|++|++.+
T Consensus 22 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~- 100 (261)
T PRK14263 22 MAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQPNP- 100 (261)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhceEEEecCCcc-
Confidence 478999999999999999999999999999999999986 799999999764 238999998532
Q ss_pred cCcccccCChhHHHhhcc----cC-chHHHHHHHhhhhHHH---Hh--hcCCCCCChhHHHHHHHHHHHhcCCCEEEEcC
Q psy10767 68 SGALLAEDSPSYLLEYYN----CS-TLEDVFLYLCEQDQIL---FS--LVGSESAFGGQQRRVSFAVSLIHDPKILILDE 137 (149)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~---~~--~~~~~~~sgGqkqrv~iaral~~~p~illlDE 137 (149)
+ ..++.++..+.. .. ........+++..++. .. ......+|+||+||++|||||+.+|++|||||
T Consensus 101 ----~-~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE 175 (261)
T PRK14263 101 ----F-SMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDE 175 (261)
T ss_pred ----c-cccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 2 244545443321 01 1112223333332221 01 11233569999999999999999999999999
Q ss_pred CCCCCCcCCC
Q psy10767 138 PTVGLDPVLS 147 (149)
Q Consensus 138 Pt~gLD~~~~ 147 (149)
||+|||+..+
T Consensus 176 PtsgLD~~~~ 185 (261)
T PRK14263 176 PCSALDPIAT 185 (261)
T ss_pred CCccCCHHHH
Confidence 9999999764
No 247
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-34 Score=227.09 Aligned_cols=139 Identities=24% Similarity=0.243 Sum_probs=101.4
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCC--------cceEEECCeecc---------eeeeeecCccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLD--------HGSISLSARTVR---------DIGYMPQVGLM 66 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~--------~G~i~~~g~~~~---------~i~~~~q~~~~ 66 (149)
.+++++||++.+|++++|+||||||||||+++|+|+++|+ +|+|.++|.++. .++|++|++..
T Consensus 15 ~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~v~q~~~~ 94 (272)
T PRK13547 15 AILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVLPQAAQP 94 (272)
T ss_pred eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHHHhhcEEecccCCC
Confidence 4799999999999999999999999999999999999998 999999997652 37899997421
Q ss_pred ccCcccccCChhHHHhhccc------C---c-hHHHHHHHhhhhHHHH-hhcCCCCCChhHHHHHHHHHHHh--------
Q psy10767 67 RSGALLAEDSPSYLLEYYNC------S---T-LEDVFLYLCEQDQILF-SLVGSESAFGGQQRRVSFAVSLI-------- 127 (149)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~------~---~-~~~~~~~~~~~~~~~~-~~~~~~~~sgGqkqrv~iaral~-------- 127 (149)
....++.++..+... . . ..+....+++..++.. .......+|+|||||++|||||+
T Consensus 95 -----~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~~~~~~~ 169 (272)
T PRK13547 95 -----AFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDA 169 (272)
T ss_pred -----CCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcccccccc
Confidence 122345554433110 0 0 1122233333333211 11222346999999999999999
Q ss_pred -cCCCEEEEcCCCCCCCcCCC
Q psy10767 128 -HDPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 128 -~~p~illlDEPt~gLD~~~~ 147 (149)
.+|++|||||||++||+..+
T Consensus 170 ~~~p~lllLDEPt~~LD~~~~ 190 (272)
T PRK13547 170 AQPPRYLLLDEPTAALDLAHQ 190 (272)
T ss_pred CCCCCEEEEcCccccCCHHHH
Confidence 59999999999999999765
No 248
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-34 Score=225.79 Aligned_cols=138 Identities=24% Similarity=0.319 Sum_probs=100.5
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCcc-----CCcceEEECCeec-----------ceeeeeecCcccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLR-----LDHGSISLSARTV-----------RDIGYMPQVGLMR 67 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~-----~~~G~i~~~g~~~-----------~~i~~~~q~~~~~ 67 (149)
++++|+||++.+||++||+||||||||||+++|+|+++ |++|+|.++|.++ +.++|+||++.+
T Consensus 34 ~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~- 112 (267)
T PRK14237 34 EAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRPNP- 112 (267)
T ss_pred eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHHHhcceEEEecCCcc-
Confidence 47999999999999999999999999999999999986 5799999999764 248999998432
Q ss_pred cCcccccCChhHHHhhc----ccCc---hHHHHHHHhhhhHHH-----HhhcCCCCCChhHHHHHHHHHHHhcCCCEEEE
Q psy10767 68 SGALLAEDSPSYLLEYY----NCST---LEDVFLYLCEQDQIL-----FSLVGSESAFGGQQRRVSFAVSLIHDPKILIL 135 (149)
Q Consensus 68 ~~~~~~~~~~~~~~~~~----~~~~---~~~~~~~~~~~~~~~-----~~~~~~~~~sgGqkqrv~iaral~~~p~illl 135 (149)
+. .++.++..+. .... ....+...++..++. ........+|+|||||++||||++.+|+++||
T Consensus 113 ----~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~laral~~~p~lllL 187 (267)
T PRK14237 113 ----FA-KSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARAIAVKPDILLM 187 (267)
T ss_pred ----cc-ccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 22 2455554331 1111 112222222222210 01122335699999999999999999999999
Q ss_pred cCCCCCCCcCCC
Q psy10767 136 DEPTVGLDPVLS 147 (149)
Q Consensus 136 DEPt~gLD~~~~ 147 (149)
||||++||+..+
T Consensus 188 DEPt~~LD~~~~ 199 (267)
T PRK14237 188 DEPASALDPIST 199 (267)
T ss_pred eCCcccCCHHHH
Confidence 999999998754
No 249
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=5.3e-35 Score=246.57 Aligned_cols=141 Identities=23% Similarity=0.267 Sum_probs=102.3
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccC-----CcceEEECCeec-------------ceeeeeecCcc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRL-----DHGSISLSARTV-------------RDIGYMPQVGL 65 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~-----~~G~i~~~g~~~-------------~~i~~~~q~~~ 65 (149)
++++++||++.+||++||+||||||||||+|+|+|+++| ++|+|+++|.++ +.++|+||++.
T Consensus 23 ~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~~~ 102 (529)
T PRK15134 23 TVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEPM 102 (529)
T ss_pred eeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHHHHHhcCceEEEecCch
Confidence 589999999999999999999999999999999999986 799999998764 25899999852
Q ss_pred cccCcccccCChhHHHhh----c-ccCc--hHHHHHHHhhhhHHHH----hhcCCCCCChhHHHHHHHHHHHhcCCCEEE
Q psy10767 66 MRSGALLAEDSPSYLLEY----Y-NCST--LEDVFLYLCEQDQILF----SLVGSESAFGGQQRRVSFAVSLIHDPKILI 134 (149)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~----~-~~~~--~~~~~~~~~~~~~~~~----~~~~~~~~sgGqkqrv~iaral~~~p~ill 134 (149)
. .+....++.++... . .... ....+.++++.+++.. .......|||||||||+|||||+.+|++||
T Consensus 103 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qrv~iAraL~~~p~lll 179 (529)
T PRK15134 103 V---SLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPELLI 179 (529)
T ss_pred h---hcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHHHHHHHHHHhcCCCEEE
Confidence 1 01222233332211 1 1111 1233344444444311 112234559999999999999999999999
Q ss_pred EcCCCCCCCcCCC
Q psy10767 135 LDEPTVGLDPVLS 147 (149)
Q Consensus 135 lDEPt~gLD~~~~ 147 (149)
|||||++||+..+
T Consensus 180 lDEPt~~LD~~~~ 192 (529)
T PRK15134 180 ADEPTTALDVSVQ 192 (529)
T ss_pred EcCCCCccCHHHH
Confidence 9999999999765
No 250
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=100.00 E-value=1.1e-34 Score=223.86 Aligned_cols=137 Identities=23% Similarity=0.279 Sum_probs=100.4
Q ss_pred ceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec---------ceeeeeecCcccccCcccccC
Q psy10767 5 SASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV---------RDIGYMPQVGLMRSGALLAED 75 (149)
Q Consensus 5 ~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~---------~~i~~~~q~~~~~~~~~~~~~ 75 (149)
.++|+||++++|++++|+||||||||||+++|+|+++ .+|+|.++|+++ +.++|++|++. .....
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~-----~~~~~ 84 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-GSGSIQFAGQPLEAWSAAELARHRAYLSQQQT-----PPFAM 84 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-CCeEEEECCEecCcCCHHHHhhheEEecccCc-----cCCCc
Confidence 5899999999999999999999999999999999985 599999999865 24899999742 22334
Q ss_pred ChhHHHhhccc---Cc--hHHHHHHHhhhhHHHH-hhcCCCCCChhHHHHHHHHHHHhc-------CCCEEEEcCCCCCC
Q psy10767 76 SPSYLLEYYNC---ST--LEDVFLYLCEQDQILF-SLVGSESAFGGQQRRVSFAVSLIH-------DPKILILDEPTVGL 142 (149)
Q Consensus 76 ~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~-~~~~~~~~sgGqkqrv~iaral~~-------~p~illlDEPt~gL 142 (149)
++.++..+... .. .......+++..++.. .......+|+|||||++|||||+. +|+++||||||+||
T Consensus 85 tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~L 164 (248)
T PRK03695 85 PVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSL 164 (248)
T ss_pred cHHHHHHhcCccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccC
Confidence 45555443211 11 1222333444333311 112233459999999999999997 67999999999999
Q ss_pred CcCCC
Q psy10767 143 DPVLS 147 (149)
Q Consensus 143 D~~~~ 147 (149)
|+..+
T Consensus 165 D~~~~ 169 (248)
T PRK03695 165 DVAQQ 169 (248)
T ss_pred CHHHH
Confidence 99764
No 251
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-34 Score=226.53 Aligned_cols=138 Identities=25% Similarity=0.401 Sum_probs=99.1
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccC-----CcceEEECCeec-----------ceeeeeecCcccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRL-----DHGSISLSARTV-----------RDIGYMPQVGLMR 67 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~-----~~G~i~~~g~~~-----------~~i~~~~q~~~~~ 67 (149)
.+++++||++.+||+++|+||||||||||+++|+|+++| ++|+|.++|+++ +.++|+||++.++
T Consensus 34 ~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~~~~i~~v~q~~~l~ 113 (274)
T PRK14265 34 LALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRPNPF 113 (274)
T ss_pred EEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhHHHhhcEEEEccCCccc
Confidence 478999999999999999999999999999999999863 589999999764 2589999985322
Q ss_pred cCcccccCChhHHHhhc----ccC-chHHHHHHHhhhhHH---HH--hhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcC
Q psy10767 68 SGALLAEDSPSYLLEYY----NCS-TLEDVFLYLCEQDQI---LF--SLVGSESAFGGQQRRVSFAVSLIHDPKILILDE 137 (149)
Q Consensus 68 ~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~---~~--~~~~~~~~sgGqkqrv~iaral~~~p~illlDE 137 (149)
. .++.++..+. ... ..++......+..++ .. .......+|+|||||++|||||+.+|++|||||
T Consensus 114 -----~-~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDE 187 (274)
T PRK14265 114 -----P-KSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDE 187 (274)
T ss_pred -----c-ccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeC
Confidence 2 2344443321 010 111122222222221 01 112223469999999999999999999999999
Q ss_pred CCCCCCcCCC
Q psy10767 138 PTVGLDPVLS 147 (149)
Q Consensus 138 Pt~gLD~~~~ 147 (149)
||++||+..+
T Consensus 188 Pt~~LD~~~~ 197 (274)
T PRK14265 188 PCSALDPIST 197 (274)
T ss_pred CcccCCHHHH
Confidence 9999998764
No 252
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.2e-35 Score=226.63 Aligned_cols=133 Identities=32% Similarity=0.442 Sum_probs=106.7
Q ss_pred cceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec-------------ceeeeeecCcccccCccccc
Q psy10767 8 SLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV-------------RDIGYMPQVGLMRSGALLAE 74 (149)
Q Consensus 8 ~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~-------------~~i~~~~q~~~~~~~~~~~~ 74 (149)
++||..+...++||.|+||||||||+|+|+|+.+|++|+|.++|+.+ ++||||||+.. +++.
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDAR-----LFpH 90 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDAR-----LFPH 90 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccc-----cccc
Confidence 57888888899999999999999999999999999999999999765 56999999954 4555
Q ss_pred CChhHHHhhcccCchHHHHHHHhhhhHH---HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCCC
Q psy10767 75 DSPSYLLEYYNCSTLEDVFLYLCEQDQI---LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~~ 147 (149)
.++..|+.+-.+......++.+....++ +.++... |||||||||+|+|||+..|++|+||||.++||..-+
T Consensus 91 ~tVrgNL~YG~~~~~~~~fd~iv~lLGI~hLL~R~P~~--LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK 164 (352)
T COG4148 91 YTVRGNLRYGMWKSMRAQFDQLVALLGIEHLLDRYPGT--LSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRK 164 (352)
T ss_pred eEEecchhhhhcccchHhHHHHHHHhCcHHHHhhCCCc--cCcchhhHHHHHHHHhcCCCeeeecCchhhcccchh
Confidence 6666666654443334445555555554 4444444 499999999999999999999999999999997643
No 253
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-34 Score=225.88 Aligned_cols=138 Identities=28% Similarity=0.395 Sum_probs=100.4
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccC-----CcceEEECCeec-----------ceeeeeecCcccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRL-----DHGSISLSARTV-----------RDIGYMPQVGLMR 67 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~-----~~G~i~~~g~~~-----------~~i~~~~q~~~~~ 67 (149)
.+++|+||++.+||+++|+||||||||||+++|+|+++| ++|+|.++|.++ +.++|++|++.+
T Consensus 39 ~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l- 117 (272)
T PRK14236 39 QALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNP- 117 (272)
T ss_pred eEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHHHhccEEEEecCCcc-
Confidence 478999999999999999999999999999999999874 899999998764 248999998532
Q ss_pred cCcccccCChhHHHhhc----ccCc---hHHHHHHHhhhhHHH-----HhhcCCCCCChhHHHHHHHHHHHhcCCCEEEE
Q psy10767 68 SGALLAEDSPSYLLEYY----NCST---LEDVFLYLCEQDQIL-----FSLVGSESAFGGQQRRVSFAVSLIHDPKILIL 135 (149)
Q Consensus 68 ~~~~~~~~~~~~~~~~~----~~~~---~~~~~~~~~~~~~~~-----~~~~~~~~~sgGqkqrv~iaral~~~p~illl 135 (149)
+.. ++.++..+. .... .++...++.+..++. ........+|+|||||++|||||+.+|+++||
T Consensus 118 ----~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllL 192 (272)
T PRK14236 118 ----FPK-SIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAIAIEPEVLLL 192 (272)
T ss_pred ----Ccc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHHHHHCCCCEEEE
Confidence 222 444444321 1111 112222233222211 01122345699999999999999999999999
Q ss_pred cCCCCCCCcCCC
Q psy10767 136 DEPTVGLDPVLS 147 (149)
Q Consensus 136 DEPt~gLD~~~~ 147 (149)
||||+|||+..+
T Consensus 193 DEPt~gLD~~~~ 204 (272)
T PRK14236 193 DEPTSALDPIST 204 (272)
T ss_pred eCCcccCCHHHH
Confidence 999999999764
No 254
>KOG0057|consensus
Probab=100.00 E-value=7.9e-35 Score=240.63 Aligned_cols=136 Identities=29% Similarity=0.460 Sum_probs=108.6
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeecc---------eeeeeecCcccccCccccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVR---------DIGYMPQVGLMRSGALLAE 74 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~~---------~i~~~~q~~~~~~~~~~~~ 74 (149)
.+|+++||+|++||-+||+|+|||||||++|+|.++++ ++|+|.+||++++ .||+|||+.. ..+
T Consensus 366 ~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~------LFn 438 (591)
T KOG0057|consen 366 KVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQDSV------LFN 438 (591)
T ss_pred ceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeCCccc------ccc
Confidence 38999999999999999999999999999999999999 9999999999873 4999999843 334
Q ss_pred CChhHHHhhcccCchHHHHHHHhhhhHH---HHhh-------cC--CCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCC
Q psy10767 75 DSPSYLLEYYNCSTLEDVFLYLCEQDQI---LFSL-------VG--SESAFGGQQRRVSFAVSLIHDPKILILDEPTVGL 142 (149)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-------~~--~~~~sgGqkqrv~iaral~~~p~illlDEPt~gL 142 (149)
+++.+|..+-......+.+.+.++..++ ..+. ++ -+.+||||||||+||||++.+|+|+++|||||+|
T Consensus 439 dTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~L 518 (591)
T KOG0057|consen 439 DTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEATSAL 518 (591)
T ss_pred hhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEecCccccc
Confidence 6677777665444444444444444433 1111 22 2357999999999999999999999999999999
Q ss_pred CcCC
Q psy10767 143 DPVL 146 (149)
Q Consensus 143 D~~~ 146 (149)
|..+
T Consensus 519 D~~T 522 (591)
T KOG0057|consen 519 DSET 522 (591)
T ss_pred chhh
Confidence 9864
No 255
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.3e-35 Score=227.66 Aligned_cols=138 Identities=24% Similarity=0.246 Sum_probs=100.4
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccC-----CcceEEECCeec----------ceeeeeecCccccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRL-----DHGSISLSARTV----------RDIGYMPQVGLMRS 68 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~-----~~G~i~~~g~~~----------~~i~~~~q~~~~~~ 68 (149)
.+++|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|.++ +.++|++|++.+
T Consensus 35 ~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~l-- 112 (276)
T PRK14271 35 TVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPNP-- 112 (276)
T ss_pred EEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHhhheEEeccCCcc--
Confidence 478999999999999999999999999999999999985 699999999764 248999998532
Q ss_pred CcccccCChhHHHhhc----ccCch---HHHHHHHhhhhHHHH-----hhcCCCCCChhHHHHHHHHHHHhcCCCEEEEc
Q psy10767 69 GALLAEDSPSYLLEYY----NCSTL---EDVFLYLCEQDQILF-----SLVGSESAFGGQQRRVSFAVSLIHDPKILILD 136 (149)
Q Consensus 69 ~~~~~~~~~~~~~~~~----~~~~~---~~~~~~~~~~~~~~~-----~~~~~~~~sgGqkqrv~iaral~~~p~illlD 136 (149)
+. .++.++..+. ..... .......++..++.. .......+|+|||||++|||||+.+|+++|||
T Consensus 113 ---~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAral~~~p~lllLD 188 (276)
T PRK14271 113 ---FP-MSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLD 188 (276)
T ss_pred ---CC-ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 22 3444444321 11111 111222222222210 11223356999999999999999999999999
Q ss_pred CCCCCCCcCCC
Q psy10767 137 EPTVGLDPVLS 147 (149)
Q Consensus 137 EPt~gLD~~~~ 147 (149)
|||++||+..+
T Consensus 189 EPt~~LD~~~~ 199 (276)
T PRK14271 189 EPTSALDPTTT 199 (276)
T ss_pred CCcccCCHHHH
Confidence 99999998765
No 256
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=100.00 E-value=1.5e-34 Score=222.95 Aligned_cols=138 Identities=22% Similarity=0.224 Sum_probs=98.1
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcC--ccCCcceEEECCeecc----------eeeeeecCcccccCcc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNR--LRLDHGSISLSARTVR----------DIGYMPQVGLMRSGAL 71 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~--~~~~~G~i~~~g~~~~----------~i~~~~q~~~~~~~~~ 71 (149)
.+++++||++++||++||+|+||||||||+++|+|+ ++|++|+|+++|.++. .++|++|++..
T Consensus 21 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~q~~~~----- 95 (252)
T CHL00131 21 EILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHLGIFLAFQYPIE----- 95 (252)
T ss_pred EeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhheeeEEEEeccccc-----
Confidence 479999999999999999999999999999999998 5799999999997652 26788887432
Q ss_pred cccCChhHHHhhc-c-------cC--ch---HHHHHHHhhhhHHH----HhhcCCCCCChhHHHHHHHHHHHhcCCCEEE
Q psy10767 72 LAEDSPSYLLEYY-N-------CS--TL---EDVFLYLCEQDQIL----FSLVGSESAFGGQQRRVSFAVSLIHDPKILI 134 (149)
Q Consensus 72 ~~~~~~~~~~~~~-~-------~~--~~---~~~~~~~~~~~~~~----~~~~~~~~~sgGqkqrv~iaral~~~p~ill 134 (149)
+...+..++..+. . .. .. ...+..+++..++. ..... ..+|||||||++|||||+.+|+++|
T Consensus 96 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~~LSgG~~qrv~la~al~~~p~lll 174 (252)
T CHL00131 96 IPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVN-EGFSGGEKKRNEILQMALLDSELAI 174 (252)
T ss_pred cccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccc-cCCCHHHHHHHHHHHHHHcCCCEEE
Confidence 2222333332211 0 00 00 11122233332221 11121 1369999999999999999999999
Q ss_pred EcCCCCCCCcCCC
Q psy10767 135 LDEPTVGLDPVLS 147 (149)
Q Consensus 135 lDEPt~gLD~~~~ 147 (149)
|||||++||+..+
T Consensus 175 lDEPt~~LD~~~~ 187 (252)
T CHL00131 175 LDETDSGLDIDAL 187 (252)
T ss_pred EcCCcccCCHHHH
Confidence 9999999998765
No 257
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=7.5e-35 Score=244.25 Aligned_cols=141 Identities=23% Similarity=0.267 Sum_probs=102.2
Q ss_pred ceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec----------ceeeeeecCcccccCccccc
Q psy10767 5 SASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV----------RDIGYMPQVGLMRSGALLAE 74 (149)
Q Consensus 5 ~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~----------~~i~~~~q~~~~~~~~~~~~ 74 (149)
+++++||++.+||+++|+||||||||||+|+|+|+.+|++|+|.++|.++ +.++|++|++.. ..++..
T Consensus 267 ~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~--~~~~~~ 344 (501)
T PRK10762 267 GVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKR--DGLVLG 344 (501)
T ss_pred CcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCEEecCcccc--CCCcCC
Confidence 58999999999999999999999999999999999999999999999764 248999998410 012233
Q ss_pred CChhHHHhhc------c----cCc--hHHHHHHHhhhhHHH--HhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCC
Q psy10767 75 DSPSYLLEYY------N----CST--LEDVFLYLCEQDQIL--FSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTV 140 (149)
Q Consensus 75 ~~~~~~~~~~------~----~~~--~~~~~~~~~~~~~~~--~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~ 140 (149)
.++.++..+. . ... ..+.+..+++.+++. ........||||||||++|||||+.+|++|||||||+
T Consensus 345 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al~~~p~lllLDEPt~ 424 (501)
T PRK10762 345 MSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTR 424 (501)
T ss_pred CcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCC
Confidence 4444443321 0 000 112233333433331 1112223569999999999999999999999999999
Q ss_pred CCCcCCC
Q psy10767 141 GLDPVLS 147 (149)
Q Consensus 141 gLD~~~~ 147 (149)
|||+..+
T Consensus 425 ~LD~~~~ 431 (501)
T PRK10762 425 GVDVGAK 431 (501)
T ss_pred CCCHhHH
Confidence 9999765
No 258
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.2e-35 Score=244.75 Aligned_cols=141 Identities=18% Similarity=0.210 Sum_probs=102.5
Q ss_pred ceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec----------ceeeeeecCcccccCccccc
Q psy10767 5 SASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV----------RDIGYMPQVGLMRSGALLAE 74 (149)
Q Consensus 5 ~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~----------~~i~~~~q~~~~~~~~~~~~ 74 (149)
+++|+||++.+||+++|+||||||||||+|+|+|+.+|++|+|+++|+++ ..++|++|++.. ..++..
T Consensus 268 ~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~--~~~~~~ 345 (501)
T PRK11288 268 LREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKA--EGIIPV 345 (501)
T ss_pred cccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhh--CCCcCC
Confidence 68999999999999999999999999999999999999999999998764 248999997420 012233
Q ss_pred CChhHHHhhccc----------Cch--HHHHHHHhhhhHHH--HhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCC
Q psy10767 75 DSPSYLLEYYNC----------STL--EDVFLYLCEQDQIL--FSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTV 140 (149)
Q Consensus 75 ~~~~~~~~~~~~----------~~~--~~~~~~~~~~~~~~--~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~ 140 (149)
.++.++..+... ... .+.+..+++.+++. ........||||||||++|||||+.+|++|||||||+
T Consensus 346 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~~~p~lllLDEPt~ 425 (501)
T PRK11288 346 HSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTR 425 (501)
T ss_pred CCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHHccCCCEEEEcCCCC
Confidence 444444322100 011 12233344443331 1122233569999999999999999999999999999
Q ss_pred CCCcCCC
Q psy10767 141 GLDPVLS 147 (149)
Q Consensus 141 gLD~~~~ 147 (149)
|||+..+
T Consensus 426 ~LD~~~~ 432 (501)
T PRK11288 426 GIDVGAK 432 (501)
T ss_pred CCCHhHH
Confidence 9999765
No 259
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=2.5e-35 Score=213.76 Aligned_cols=138 Identities=24% Similarity=0.320 Sum_probs=107.8
Q ss_pred ccceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec---------ceeeeeecCcccccCcccc
Q psy10767 3 DVSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV---------RDIGYMPQVGLMRSGALLA 73 (149)
Q Consensus 3 ~~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~---------~~i~~~~q~~~~~~~~~~~ 73 (149)
.++|+|+||++.+||..+|+||||||||||+|+++-++.|++|+++|.|+++ +.|+|+-|.+.++..
T Consensus 16 a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~---- 91 (223)
T COG4619 16 AKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGD---- 91 (223)
T ss_pred CeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCcccccc----
Confidence 3689999999999999999999999999999999999999999999999987 358899998654433
Q ss_pred cCChhHHHhhc----ccCchHHHHHHHhhhhHH----HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcC
Q psy10767 74 EDSPSYLLEYY----NCSTLEDVFLYLCEQDQI----LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPV 145 (149)
Q Consensus 74 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~----~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~ 145 (149)
++++|+.+. +.......+...+..+++ +.+.+..+ |||||||++|+|-|..-|+||+|||||++||+.
T Consensus 92 --tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~l--SGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~ 167 (223)
T COG4619 92 --TVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITEL--SGGEKQRIALIRNLQFMPKILLLDEITSALDES 167 (223)
T ss_pred --chhhccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhc--cchHHHHHHHHHHhhcCCceEEecCchhhcChh
Confidence 233333221 222233444444444443 34444444 999999999999999999999999999999998
Q ss_pred CCC
Q psy10767 146 LSF 148 (149)
Q Consensus 146 ~~~ 148 (149)
++.
T Consensus 168 nkr 170 (223)
T COG4619 168 NKR 170 (223)
T ss_pred hHH
Confidence 754
No 260
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=6.8e-35 Score=245.39 Aligned_cols=139 Identities=24% Similarity=0.275 Sum_probs=102.4
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEEC-Cee---------------cceeeeeecCcccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLS-ART---------------VRDIGYMPQVGLMR 67 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~-g~~---------------~~~i~~~~q~~~~~ 67 (149)
.+++|+||++.+||+++|+||||||||||+|+|+|+++|++|+|+++ |.+ .+.++|+||++.
T Consensus 298 ~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~-- 375 (520)
T TIGR03269 298 KAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYD-- 375 (520)
T ss_pred eEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchhhHHHHhhhEEEEccCcc--
Confidence 47999999999999999999999999999999999999999999995 421 124899999842
Q ss_pred cCcccccCChhHHHhhc---ccCc--hHHHHHHHhhhhHHHH------hhcCCCCCChhHHHHHHHHHHHhcCCCEEEEc
Q psy10767 68 SGALLAEDSPSYLLEYY---NCST--LEDVFLYLCEQDQILF------SLVGSESAFGGQQRRVSFAVSLIHDPKILILD 136 (149)
Q Consensus 68 ~~~~~~~~~~~~~~~~~---~~~~--~~~~~~~~~~~~~~~~------~~~~~~~~sgGqkqrv~iaral~~~p~illlD 136 (149)
++...++.++..+. .... .+..+..+++.+++.. .......||||||||++|||||+.+|++||||
T Consensus 376 ---l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lLllD 452 (520)
T TIGR03269 376 ---LYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILD 452 (520)
T ss_pred ---cCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 33445555555431 1111 1122333334333311 11223346999999999999999999999999
Q ss_pred CCCCCCCcCCC
Q psy10767 137 EPTVGLDPVLS 147 (149)
Q Consensus 137 EPt~gLD~~~~ 147 (149)
|||++||+..+
T Consensus 453 EPt~~LD~~~~ 463 (520)
T TIGR03269 453 EPTGTMDPITK 463 (520)
T ss_pred CCcccCCHHHH
Confidence 99999999765
No 261
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=1.7e-34 Score=244.12 Aligned_cols=138 Identities=25% Similarity=0.418 Sum_probs=103.7
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec---------ceeeeeecCcccccCccccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV---------RDIGYMPQVGLMRSGALLAE 74 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~---------~~i~~~~q~~~~~~~~~~~~ 74 (149)
++++|+||++++|+.++|+||||||||||+++|+|+++|++|+|.++|.++ +.++|+||++.++.
T Consensus 332 ~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~------ 405 (544)
T TIGR01842 332 PTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFP------ 405 (544)
T ss_pred cccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheEEecCCccccc------
Confidence 579999999999999999999999999999999999999999999999876 35999999854432
Q ss_pred CChhHHHhhcccCchHHHHHHHhhhhH---HH-------HhhcC--CCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCC
Q psy10767 75 DSPSYLLEYYNCSTLEDVFLYLCEQDQ---IL-------FSLVG--SESAFGGQQRRVSFAVSLIHDPKILILDEPTVGL 142 (149)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-------~~~~~--~~~~sgGqkqrv~iaral~~~p~illlDEPt~gL 142 (149)
.++.+|.........++.....++..+ .. +...+ ...+|||||||++||||++++|+++||||||++|
T Consensus 406 ~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~ililDEpts~L 485 (544)
T TIGR01842 406 GTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNL 485 (544)
T ss_pred ccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccc
Confidence 355566553322111222222222111 11 11111 2347999999999999999999999999999999
Q ss_pred CcCCC
Q psy10767 143 DPVLS 147 (149)
Q Consensus 143 D~~~~ 147 (149)
|+..+
T Consensus 486 D~~~~ 490 (544)
T TIGR01842 486 DEEGE 490 (544)
T ss_pred CHHHH
Confidence 98754
No 262
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=1.9e-34 Score=223.51 Aligned_cols=137 Identities=22% Similarity=0.264 Sum_probs=98.7
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec---------ceeeeeecCcccccCccccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV---------RDIGYMPQVGLMRSGALLAE 74 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~---------~~i~~~~q~~~~~~~~~~~~ 74 (149)
.+++++||++++||+++|+|+||||||||+++|+|+++|++|+|+++|.++ +.++|++|++.++.
T Consensus 35 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~i~~v~q~~~l~~------ 108 (257)
T cd03288 35 PVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSRLSIILQDPILFS------ 108 (257)
T ss_pred cceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhhhEEEECCCCcccc------
Confidence 579999999999999999999999999999999999999999999999765 24899999853322
Q ss_pred CChhHHHhhcccCchHHHHHHHhhhhH---HHHhh---------cCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCC
Q psy10767 75 DSPSYLLEYYNCSTLEDVFLYLCEQDQ---ILFSL---------VGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGL 142 (149)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~---------~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gL 142 (149)
.++.++....... .........+... ..... .....+|+|||||++||||++.+|+++||||||++|
T Consensus 109 ~tv~~nl~~~~~~-~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gL 187 (257)
T cd03288 109 GSIRFNLDPECKC-TDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASI 187 (257)
T ss_pred cHHHHhcCcCCCC-CHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCccCC
Confidence 1333332211100 0111111111111 11111 012356999999999999999999999999999999
Q ss_pred CcCCC
Q psy10767 143 DPVLS 147 (149)
Q Consensus 143 D~~~~ 147 (149)
|+..+
T Consensus 188 D~~~~ 192 (257)
T cd03288 188 DMATE 192 (257)
T ss_pred CHHHH
Confidence 99754
No 263
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=2.2e-34 Score=225.61 Aligned_cols=136 Identities=26% Similarity=0.390 Sum_probs=102.3
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec---------ceeeeeecCcccccCccccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV---------RDIGYMPQVGLMRSGALLAE 74 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~---------~~i~~~~q~~~~~~~~~~~~ 74 (149)
++++|+||+|++||+++|+|+||||||||+++|+|+++ ++|+|+++|.++ +.++|+||++.++ .
T Consensus 18 ~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i~~v~q~~~lf-----~- 90 (275)
T cd03289 18 AVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAFGVIPQKVFIF-----S- 90 (275)
T ss_pred cceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhEEEECCCcccc-----h-
Confidence 57999999999999999999999999999999999997 789999999875 3589999985432 2
Q ss_pred CChhHHHhhcccCchHHHHHHHhhhhHH---HHhhcCC---------CCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCC
Q psy10767 75 DSPSYLLEYYNCSTLEDVFLYLCEQDQI---LFSLVGS---------ESAFGGQQRRVSFAVSLIHDPKILILDEPTVGL 142 (149)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~---------~~~sgGqkqrv~iaral~~~p~illlDEPt~gL 142 (149)
.++.++...+.... .+.+...++..++ ....... ..+|+|||||++||||++.+|+|+||||||++|
T Consensus 91 ~tv~~nl~~~~~~~-~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~illlDEpts~L 169 (275)
T cd03289 91 GTFRKNLDPYGKWS-DEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHL 169 (275)
T ss_pred hhHHHHhhhccCCC-HHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECccccC
Confidence 24555553322111 2222223333222 2222222 236999999999999999999999999999999
Q ss_pred CcCCC
Q psy10767 143 DPVLS 147 (149)
Q Consensus 143 D~~~~ 147 (149)
|+..+
T Consensus 170 D~~~~ 174 (275)
T cd03289 170 DPITY 174 (275)
T ss_pred CHHHH
Confidence 99754
No 264
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=1.3e-34 Score=246.02 Aligned_cols=138 Identities=23% Similarity=0.337 Sum_probs=104.4
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec---------ceeeeeecCcccccCccccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV---------RDIGYMPQVGLMRSGALLAE 74 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~---------~~i~~~~q~~~~~~~~~~~~ 74 (149)
++++|+||++++|+.++|+||||||||||+++|+|+++|++|+|.++|.++ +.++|++|++.++.
T Consensus 329 ~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~------ 402 (569)
T PRK10789 329 PALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFS------ 402 (569)
T ss_pred ccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeecc------
Confidence 579999999999999999999999999999999999999999999999876 35899999854332
Q ss_pred CChhHHHhhcccCchHHHHHHHhhhhHH---H-------HhhcC--CCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCC
Q psy10767 75 DSPSYLLEYYNCSTLEDVFLYLCEQDQI---L-------FSLVG--SESAFGGQQRRVSFAVSLIHDPKILILDEPTVGL 142 (149)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-------~~~~~--~~~~sgGqkqrv~iaral~~~p~illlDEPt~gL 142 (149)
.++.+|..+......++......+..+. . +...+ ...+|||||||++||||++++|+++||||||++|
T Consensus 403 ~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts~L 482 (569)
T PRK10789 403 DTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAV 482 (569)
T ss_pred ccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccC
Confidence 3556666543222122222222222111 1 11111 2347999999999999999999999999999999
Q ss_pred CcCCC
Q psy10767 143 DPVLS 147 (149)
Q Consensus 143 D~~~~ 147 (149)
|+..+
T Consensus 483 D~~~~ 487 (569)
T PRK10789 483 DGRTE 487 (569)
T ss_pred CHHHH
Confidence 98754
No 265
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.9e-34 Score=223.50 Aligned_cols=136 Identities=24% Similarity=0.376 Sum_probs=100.1
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCcc-----CCcceEEECCeec-----------ceeeeeecCcccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLR-----LDHGSISLSARTV-----------RDIGYMPQVGLMR 67 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~-----~~~G~i~~~g~~~-----------~~i~~~~q~~~~~ 67 (149)
.+++|+||++++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++ +.++|++|++.++
T Consensus 38 ~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~ 117 (271)
T PRK14238 38 HALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMVFQKPNPF 117 (271)
T ss_pred ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHHHhhhEEEEecCCccc
Confidence 47899999999999999999999999999999999987 6999999999764 2489999985432
Q ss_pred cCcccccCChhHHHhhc----ccCch---HHHHHHHhhhh----HH---HHhhcCCCCCChhHHHHHHHHHHHhcCCCEE
Q psy10767 68 SGALLAEDSPSYLLEYY----NCSTL---EDVFLYLCEQD----QI---LFSLVGSESAFGGQQRRVSFAVSLIHDPKIL 133 (149)
Q Consensus 68 ~~~~~~~~~~~~~~~~~----~~~~~---~~~~~~~~~~~----~~---~~~~~~~~~~sgGqkqrv~iaral~~~p~il 133 (149)
. .++.++..+. ..... +..+...++.. .+ .... ...+|+|||||++|||||+.+|+++
T Consensus 118 -----~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~--~~~LSgGe~qrv~laraL~~~p~ll 189 (271)
T PRK14238 118 -----P-KSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDN--AYGLSGGQQQRLCIARCLAIEPDVI 189 (271)
T ss_pred -----c-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcC--cccCCHHHHHHHHHHHHHHcCCCEE
Confidence 2 2444444321 11111 11112222211 11 2222 2345999999999999999999999
Q ss_pred EEcCCCCCCCcCCC
Q psy10767 134 ILDEPTVGLDPVLS 147 (149)
Q Consensus 134 llDEPt~gLD~~~~ 147 (149)
||||||+|||+..+
T Consensus 190 lLDEPt~~LD~~~~ 203 (271)
T PRK14238 190 LMDEPTSALDPIST 203 (271)
T ss_pred EEeCCCCcCCHHHH
Confidence 99999999999765
No 266
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.4e-35 Score=243.90 Aligned_cols=142 Identities=21% Similarity=0.296 Sum_probs=102.8
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCcc-CCcceEEECCeec----------ceeeeeecCcccccCccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLR-LDHGSISLSARTV----------RDIGYMPQVGLMRSGALL 72 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~-~~~G~i~~~g~~~----------~~i~~~~q~~~~~~~~~~ 72 (149)
.+++|+||++++||+++|+||||||||||+|+|+|+++ |++|+|+++|+++ ..++|++|++.. ..++
T Consensus 276 ~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~--~~~~ 353 (506)
T PRK13549 276 KRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKR--DGIV 353 (506)
T ss_pred ccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhh--CCCc
Confidence 47899999999999999999999999999999999998 5999999999764 248999997420 0122
Q ss_pred ccCChhHHHhhc------c---cCc--hHHHHHHHhhhhHHH--HhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCC
Q psy10767 73 AEDSPSYLLEYY------N---CST--LEDVFLYLCEQDQIL--FSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPT 139 (149)
Q Consensus 73 ~~~~~~~~~~~~------~---~~~--~~~~~~~~~~~~~~~--~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt 139 (149)
.+.++.++..+. . ... ....+..+++.+++. ........|||||||||+||||++.+|++|||||||
T Consensus 354 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA~al~~~p~lllLDEPt 433 (506)
T PRK13549 354 PVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPT 433 (506)
T ss_pred CCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHHHHHHhhCCCEEEEcCCC
Confidence 334444443221 0 011 112233444444331 112223456999999999999999999999999999
Q ss_pred CCCCcCCC
Q psy10767 140 VGLDPVLS 147 (149)
Q Consensus 140 ~gLD~~~~ 147 (149)
+|||+..+
T Consensus 434 ~~LD~~~~ 441 (506)
T PRK13549 434 RGIDVGAK 441 (506)
T ss_pred CCcCHhHH
Confidence 99999765
No 267
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=1.2e-34 Score=245.77 Aligned_cols=137 Identities=24% Similarity=0.289 Sum_probs=98.5
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeecceeeeeecCcccccCcccccCChhHHHhh
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAEDSPSYLLEY 83 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~ 83 (149)
++++|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. ..++|++|++.+ ++..++.++..+
T Consensus 21 ~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~--~~i~~v~Q~~~~-----~~~~tv~e~l~~ 93 (556)
T PRK11819 21 QILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPG--IKVGYLPQEPQL-----DPEKTVRENVEE 93 (556)
T ss_pred eeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC--CEEEEEecCCCC-----CCCCcHHHHHHH
Confidence 5799999999999999999999999999999999999999999999753 469999998533 223344433321
Q ss_pred cc-----------------cCc-------------------------hHHHHHHHhhhhHHHHhhcCCCCCChhHHHHHH
Q psy10767 84 YN-----------------CST-------------------------LEDVFLYLCEQDQILFSLVGSESAFGGQQRRVS 121 (149)
Q Consensus 84 ~~-----------------~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~sgGqkqrv~ 121 (149)
.. ... ....+..+++.+++.........+||||||||+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~ 173 (556)
T PRK11819 94 GVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPPWDAKVTKLSGGERRRVA 173 (556)
T ss_pred hhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCcccCchhhcCHHHHHHHH
Confidence 10 000 001111111211110011122346999999999
Q ss_pred HHHHHhcCCCEEEEcCCCCCCCcCCC
Q psy10767 122 FAVSLIHDPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 122 iaral~~~p~illlDEPt~gLD~~~~ 147 (149)
|||||+.+|++|||||||++||+..+
T Consensus 174 la~al~~~p~vlLLDEPt~~LD~~~~ 199 (556)
T PRK11819 174 LCRLLLEKPDMLLLDEPTNHLDAESV 199 (556)
T ss_pred HHHHHhCCCCEEEEcCCCCcCChHHH
Confidence 99999999999999999999999765
No 268
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-34 Score=223.87 Aligned_cols=138 Identities=25% Similarity=0.443 Sum_probs=100.6
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCC-----cceEEECCeec-----------ceeeeeecCcccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLD-----HGSISLSARTV-----------RDIGYMPQVGLMR 67 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~-----~G~i~~~g~~~-----------~~i~~~~q~~~~~ 67 (149)
.+++|+||++++||+++|+|+||||||||+++|+|+++|+ +|+|.++|+++ +.++|++|+..+
T Consensus 21 ~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~l- 99 (261)
T PRK14258 21 KILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNL- 99 (261)
T ss_pred eEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHHhhccEEEEecCCcc-
Confidence 4789999999999999999999999999999999999985 89999998764 238999997432
Q ss_pred cCcccccCChhHHHhhc----ccCch---HHHHHHHhhhhHHH-----HhhcCCCCCChhHHHHHHHHHHHhcCCCEEEE
Q psy10767 68 SGALLAEDSPSYLLEYY----NCSTL---EDVFLYLCEQDQIL-----FSLVGSESAFGGQQRRVSFAVSLIHDPKILIL 135 (149)
Q Consensus 68 ~~~~~~~~~~~~~~~~~----~~~~~---~~~~~~~~~~~~~~-----~~~~~~~~~sgGqkqrv~iaral~~~p~illl 135 (149)
+. .++.++..+. ..... ......+++..++. ........+|+|||||++|||+|+.+|+++||
T Consensus 100 ----~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~vllL 174 (261)
T PRK14258 100 ----FP-MSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLM 174 (261)
T ss_pred ----Cc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 22 3444444321 11111 12222333333210 11122235699999999999999999999999
Q ss_pred cCCCCCCCcCCC
Q psy10767 136 DEPTVGLDPVLS 147 (149)
Q Consensus 136 DEPt~gLD~~~~ 147 (149)
||||++||+..+
T Consensus 175 DEP~~~LD~~~~ 186 (261)
T PRK14258 175 DEPCFGLDPIAS 186 (261)
T ss_pred eCCCccCCHHHH
Confidence 999999998764
No 269
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-34 Score=222.21 Aligned_cols=138 Identities=28% Similarity=0.375 Sum_probs=99.3
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccC-----CcceEEECCeec-----------ceeeeeecCcccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRL-----DHGSISLSARTV-----------RDIGYMPQVGLMR 67 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~-----~~G~i~~~g~~~-----------~~i~~~~q~~~~~ 67 (149)
.+++|+||++++||+++|+||||||||||+++|+|+.++ ++|+|.++|+++ +.++|++|++.++
T Consensus 20 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 99 (253)
T PRK14261 20 HALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQRPNPF 99 (253)
T ss_pred eeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhhhceEEEEecCCccC
Confidence 479999999999999999999999999999999999753 489999999764 2489999985332
Q ss_pred cCcccccCChhHHHhhc----ccCc---hHHHHHHHhhhhHHH-----HhhcCCCCCChhHHHHHHHHHHHhcCCCEEEE
Q psy10767 68 SGALLAEDSPSYLLEYY----NCST---LEDVFLYLCEQDQIL-----FSLVGSESAFGGQQRRVSFAVSLIHDPKILIL 135 (149)
Q Consensus 68 ~~~~~~~~~~~~~~~~~----~~~~---~~~~~~~~~~~~~~~-----~~~~~~~~~sgGqkqrv~iaral~~~p~illl 135 (149)
. .++.++..+. .... .+.....+++..++. ........+|+|||||++||||++.+|+++||
T Consensus 100 -----~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllL 173 (253)
T PRK14261 100 -----P-KSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILM 173 (253)
T ss_pred -----c-ccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 2 2444444321 1111 111222222222210 01122234699999999999999999999999
Q ss_pred cCCCCCCCcCCC
Q psy10767 136 DEPTVGLDPVLS 147 (149)
Q Consensus 136 DEPt~gLD~~~~ 147 (149)
||||+|||+..+
T Consensus 174 DEP~~gLD~~~~ 185 (253)
T PRK14261 174 DEPCSALDPIAT 185 (253)
T ss_pred eCCcccCCHHHH
Confidence 999999999765
No 270
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=1e-34 Score=242.02 Aligned_cols=139 Identities=27% Similarity=0.314 Sum_probs=107.7
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec-----------ceeeeeecCcccccCccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV-----------RDIGYMPQVGLMRSGALL 72 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~-----------~~i~~~~q~~~~~~~~~~ 72 (149)
.+++||||++.+||++||+|+||||||||.|+|+|+.+|++|+|.++|.+. +++-++||+++ ..+.
T Consensus 305 ~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~---~SLn 381 (539)
T COG1123 305 KAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPY---SSLN 381 (539)
T ss_pred eeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccccchhhhhhhheEEEEeCcc---cccC
Confidence 368999999999999999999999999999999999999999999999762 35889999865 3455
Q ss_pred ccCChhHHHhh----cccCc---hHHHHHHHhhhhHH----HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCC
Q psy10767 73 AEDSPSYLLEY----YNCST---LEDVFLYLCEQDQI----LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVG 141 (149)
Q Consensus 73 ~~~~~~~~~~~----~~~~~---~~~~~~~~~~~~~~----~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~g 141 (149)
++.++.+.... +.... ......++++..++ ..++.+. +|||||||++|||||+.+|++|++|||||.
T Consensus 382 Pr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~e--lSGGQrQRvaIARALa~~P~lli~DEp~Sa 459 (539)
T COG1123 382 PRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHE--LSGGQRQRVAIARALALEPKLLILDEPVSA 459 (539)
T ss_pred ccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchh--cCcchhHHHHHHHHHhcCCCEEEecCCccc
Confidence 66666554432 21111 12234444554443 3444444 499999999999999999999999999999
Q ss_pred CCcCCC
Q psy10767 142 LDPVLS 147 (149)
Q Consensus 142 LD~~~~ 147 (149)
||+..+
T Consensus 460 LDvsvq 465 (539)
T COG1123 460 LDVSVQ 465 (539)
T ss_pred cCHHHH
Confidence 998754
No 271
>KOG0055|consensus
Probab=100.00 E-value=7.9e-35 Score=257.91 Aligned_cols=138 Identities=25% Similarity=0.357 Sum_probs=106.8
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec---------ceeeeeecCcccccCccccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV---------RDIGYMPQVGLMRSGALLAE 74 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~---------~~i~~~~q~~~~~~~~~~~~ 74 (149)
.+++++||.|++|+.++|+|||||||||++++|.|+|+|++|+|.+||.++ .+||.|.|+|.++ .
T Consensus 367 ~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF------~ 440 (1228)
T KOG0055|consen 367 KILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLF------A 440 (1228)
T ss_pred hhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCeeeechhhh------c
Confidence 478999999999999999999999999999999999999999999999887 3599999996433 3
Q ss_pred CChhHHHhhcccCchHHHHHHHhhhhH----------HHHhhcCCCC--CChhHHHHHHHHHHHhcCCCEEEEcCCCCCC
Q psy10767 75 DSPSYLLEYYNCSTLEDVFLYLCEQDQ----------ILFSLVGSES--AFGGQQRRVSFAVSLIHDPKILILDEPTVGL 142 (149)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~--~sgGqkqrv~iaral~~~p~illlDEPt~gL 142 (149)
.++.+|..+-..+...+...++.+..+ -....++... ||||||||+||||||+++|+||||||||++|
T Consensus 441 ~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaL 520 (1228)
T KOG0055|consen 441 TTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILLLDEATSAL 520 (1228)
T ss_pred ccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEEEecCccccc
Confidence 456666665432322222222222111 1222333322 6999999999999999999999999999999
Q ss_pred CcCCC
Q psy10767 143 DPVLS 147 (149)
Q Consensus 143 D~~~~ 147 (149)
|+.+.
T Consensus 521 D~~se 525 (1228)
T KOG0055|consen 521 DAESE 525 (1228)
T ss_pred CHHHH
Confidence 99764
No 272
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=2.2e-34 Score=242.78 Aligned_cols=140 Identities=24% Similarity=0.288 Sum_probs=103.2
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec------------ceeeeeecCcccccCcc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV------------RDIGYMPQVGLMRSGAL 71 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~------------~~i~~~~q~~~~~~~~~ 71 (149)
.+++++||++.+||++||+||||||||||+|+|+|++ |++|+|+++|.++ +.++|+||++. ..+
T Consensus 300 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~-~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~---~~l 375 (529)
T PRK15134 300 VVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI-NSQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPN---SSL 375 (529)
T ss_pred eeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcC-CCCcEEEECCEEccccchhhHHHhhhceEEEEeCch---hhc
Confidence 5799999999999999999999999999999999998 4899999999654 24899999842 012
Q ss_pred cccCChhHHHhhc----c--cCc--hHHHHHHHhhhhHHH--HhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCC
Q psy10767 72 LAEDSPSYLLEYY----N--CST--LEDVFLYLCEQDQIL--FSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVG 141 (149)
Q Consensus 72 ~~~~~~~~~~~~~----~--~~~--~~~~~~~~~~~~~~~--~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~g 141 (149)
+...++.++..+. . ... .++.+..+++.+++. ........|||||||||+|||||+.+|++|||||||++
T Consensus 376 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~ 455 (529)
T PRK15134 376 NPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSS 455 (529)
T ss_pred CCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHHHHHHHHHhCCCCEEEeeCCccc
Confidence 3334455444321 1 111 122333444444431 12223345699999999999999999999999999999
Q ss_pred CCcCCC
Q psy10767 142 LDPVLS 147 (149)
Q Consensus 142 LD~~~~ 147 (149)
||+..+
T Consensus 456 LD~~~~ 461 (529)
T PRK15134 456 LDKTVQ 461 (529)
T ss_pred cCHHHH
Confidence 999765
No 273
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.3e-34 Score=238.69 Aligned_cols=137 Identities=26% Similarity=0.374 Sum_probs=108.8
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec---------ceeeeeecCcccccCccccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV---------RDIGYMPQVGLMRSGALLAE 74 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~---------~~i~~~~q~~~~~~~~~~~~ 74 (149)
++++|+||++++|+.++|+|+||||||||+++|+|+.+|++|+|.+||.+. ++++|++|+++.+.
T Consensus 335 ~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~------ 408 (559)
T COG4988 335 PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFA------ 408 (559)
T ss_pred cccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCcccc------
Confidence 789999999999999999999999999999999999999999999999876 35999999865433
Q ss_pred CChhHHHhhcccCchHHHHHHHhhhhHHH---------HhhcCC--CCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCC
Q psy10767 75 DSPSYLLEYYNCSTLEDVFLYLCEQDQIL---------FSLVGS--ESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLD 143 (149)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~--~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD 143 (149)
.++.+|..+......++....+++..... +..++. ..+||||+||+++|||++++++++|+||||++||
T Consensus 409 gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD 488 (559)
T COG4988 409 GTIRENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLD 488 (559)
T ss_pred ccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCC
Confidence 35666776655443344444444443331 111222 2369999999999999999999999999999999
Q ss_pred cCC
Q psy10767 144 PVL 146 (149)
Q Consensus 144 ~~~ 146 (149)
..+
T Consensus 489 ~et 491 (559)
T COG4988 489 AET 491 (559)
T ss_pred HhH
Confidence 875
No 274
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=1.4e-34 Score=241.97 Aligned_cols=142 Identities=18% Similarity=0.156 Sum_probs=100.6
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec---------ceeeeeecCcccccCcc---
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV---------RDIGYMPQVGLMRSGAL--- 71 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~---------~~i~~~~q~~~~~~~~~--- 71 (149)
.+++++||++.+|++++|+||||||||||+|+|+|+++|++|+|.++|.++ +.++|++|++.......
T Consensus 17 ~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~ 96 (490)
T PRK10938 17 KTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSDEWQRNNTDMLSPGED 96 (490)
T ss_pred eecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhceeccCcchhhcccchh
Confidence 478999999999999999999999999999999999999999999987643 23889999743210000
Q ss_pred cccCChhHHHhhcccCchHHHHHHHhhhhHHHH-hhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCCC
Q psy10767 72 LAEDSPSYLLEYYNCSTLEDVFLYLCEQDQILF-SLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~~ 147 (149)
....++.++... . ....+.+..+++.+++.. .......+|||||||++|||||+.+|++|||||||++||+..+
T Consensus 97 ~~~~~~~~~~~~-~-~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~ 171 (490)
T PRK10938 97 DTGRTTAEIIQD-E-VKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASR 171 (490)
T ss_pred hccccHHHhccc-c-hhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHH
Confidence 001223222211 0 111223334444443311 1222334599999999999999999999999999999999765
No 275
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.2e-34 Score=226.25 Aligned_cols=139 Identities=26% Similarity=0.327 Sum_probs=102.5
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCcc-C----CcceEEECCeec-------------ceeeeeecCcc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLR-L----DHGSISLSARTV-------------RDIGYMPQVGL 65 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~-~----~~G~i~~~g~~~-------------~~i~~~~q~~~ 65 (149)
.+++||||++++||++||+|+|||||||+.+.|+|+++ | .+|+|.|+|+++ ++|+++||++.
T Consensus 19 ~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~p~ 98 (316)
T COG0444 19 KAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPM 98 (316)
T ss_pred EEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcCch
Confidence 47999999999999999999999999999999999997 3 469999999854 46999999863
Q ss_pred cccCcccccCChh----HHHhhcccC-c---hHHHHHHHhhhhHH------HHhhcCCCCCChhHHHHHHHHHHHhcCCC
Q psy10767 66 MRSGALLAEDSPS----YLLEYYNCS-T---LEDVFLYLCEQDQI------LFSLVGSESAFGGQQRRVSFAVSLIHDPK 131 (149)
Q Consensus 66 ~~~~~~~~~~~~~----~~~~~~~~~-~---~~~~~~~~~~~~~~------~~~~~~~~~~sgGqkqrv~iaral~~~p~ 131 (149)
. .+.+-.++. +....+... . ..+.+.++++.+++ .+.+... +||||||||.||.|++.+|+
T Consensus 99 ~---sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhe--lSGGMrQRV~IAmala~~P~ 173 (316)
T COG0444 99 T---SLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHE--LSGGMRQRVMIAMALALNPK 173 (316)
T ss_pred h---hcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcc--cCCcHHHHHHHHHHHhCCCC
Confidence 1 222222222 222222111 1 12334444444443 2334444 49999999999999999999
Q ss_pred EEEEcCCCCCCCcCCC
Q psy10767 132 ILILDEPTVGLDPVLS 147 (149)
Q Consensus 132 illlDEPt~gLD~~~~ 147 (149)
+||+||||++||...+
T Consensus 174 LlIADEPTTALDvt~Q 189 (316)
T COG0444 174 LLIADEPTTALDVTVQ 189 (316)
T ss_pred EEEeCCCcchhhHHHH
Confidence 9999999999998654
No 276
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3e-34 Score=242.01 Aligned_cols=137 Identities=26% Similarity=0.253 Sum_probs=99.3
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeecceeeeeecCcccccCcccccCChhHHHhh
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAEDSPSYLLEY 83 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~ 83 (149)
++++++||++.+||+++|+||||||||||+|+|+|+++|++|+|.+++. ..++|++|+...+ ...++.++..+
T Consensus 15 ~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~--~~i~~~~q~~~~~-----~~~tv~e~l~~ 87 (530)
T PRK15064 15 PLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN--ERLGKLRQDQFAF-----EEFTVLDTVIM 87 (530)
T ss_pred EeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC--CEEEEEeccCCcC-----CCCcHHHHHHH
Confidence 5799999999999999999999999999999999999999999999874 4699999975322 22222222211
Q ss_pred c---------------cc-----------------------CchHHHHHHHhhhhHHHH--hhcCCCCCChhHHHHHHHH
Q psy10767 84 Y---------------NC-----------------------STLEDVFLYLCEQDQILF--SLVGSESAFGGQQRRVSFA 123 (149)
Q Consensus 84 ~---------------~~-----------------------~~~~~~~~~~~~~~~~~~--~~~~~~~~sgGqkqrv~ia 123 (149)
. .. ...+..+..+++.+++.. .......+||||||||+||
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGq~qrv~lA 167 (530)
T PRK15064 88 GHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVAPGWKLRVLLA 167 (530)
T ss_pred hhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhcCHHHHHHHHHH
Confidence 0 00 000112223333333311 1112235699999999999
Q ss_pred HHHhcCCCEEEEcCCCCCCCcCCC
Q psy10767 124 VSLIHDPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 124 ral~~~p~illlDEPt~gLD~~~~ 147 (149)
|||+.+|++|||||||++||+..+
T Consensus 168 ~aL~~~p~lLlLDEPt~~LD~~~~ 191 (530)
T PRK15064 168 QALFSNPDILLLDEPTNNLDINTI 191 (530)
T ss_pred HHHhcCCCEEEEcCCCcccCHHHH
Confidence 999999999999999999999765
No 277
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=2.1e-34 Score=242.09 Aligned_cols=142 Identities=22% Similarity=0.293 Sum_probs=101.6
Q ss_pred ceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec----------ceeeeeecCcccccCccccc
Q psy10767 5 SASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV----------RDIGYMPQVGLMRSGALLAE 74 (149)
Q Consensus 5 ~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~----------~~i~~~~q~~~~~~~~~~~~ 74 (149)
.++++||++++|+++||+||||||||||+|+|+|+.+|++|+|.++|.++ ..++|+||++.. ..++..
T Consensus 278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~--~~l~~~ 355 (510)
T PRK15439 278 GFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQS--SGLYLD 355 (510)
T ss_pred CccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcEECCCChhh--CCccCC
Confidence 47999999999999999999999999999999999999999999999764 248999997310 012222
Q ss_pred CChhHHHhhc-----c--cCc--hHHHHHHHhhhhHHH--HhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCC
Q psy10767 75 DSPSYLLEYY-----N--CST--LEDVFLYLCEQDQIL--FSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLD 143 (149)
Q Consensus 75 ~~~~~~~~~~-----~--~~~--~~~~~~~~~~~~~~~--~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD 143 (149)
.++.++.... . ... ..+.+..+++.+++. .......++|||||||++|||||+.+|++|||||||+|||
T Consensus 356 ~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD 435 (510)
T PRK15439 356 APLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVD 435 (510)
T ss_pred CcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcC
Confidence 3333332110 0 011 112233333433331 1112234569999999999999999999999999999999
Q ss_pred cCCCC
Q psy10767 144 PVLSF 148 (149)
Q Consensus 144 ~~~~~ 148 (149)
+..+.
T Consensus 436 ~~~~~ 440 (510)
T PRK15439 436 VSARN 440 (510)
T ss_pred hhHHH
Confidence 98753
No 278
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=7.3e-34 Score=223.43 Aligned_cols=133 Identities=22% Similarity=0.279 Sum_probs=97.4
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeecceeeeeecCcccccCcccccCChhHHHhh
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAEDSPSYLLEY 83 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~ 83 (149)
.+++++||++.+||+++|+||||||||||+++|+|+++|++|+|.++| .++|++|++.++ . .++.++..+
T Consensus 51 ~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g----~i~yv~q~~~l~-----~-~tv~enl~~ 120 (282)
T cd03291 51 PVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG----RISFSSQFSWIM-----P-GTIKENIIF 120 (282)
T ss_pred cceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC----EEEEEeCccccc-----c-cCHHHHhhc
Confidence 479999999999999999999999999999999999999999999988 499999985322 2 245554433
Q ss_pred cccCchHHHHHHHhhh---hHHHHhhc---------CCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCCC
Q psy10767 84 YNCSTLEDVFLYLCEQ---DQILFSLV---------GSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 84 ~~~~~~~~~~~~~~~~---~~~~~~~~---------~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~~ 147 (149)
...... .......+. ........ ....+|+|||||++|||||+.+|+++||||||++||+..+
T Consensus 121 ~~~~~~-~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~ 195 (282)
T cd03291 121 GVSYDE-YRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTE 195 (282)
T ss_pred ccccCH-HHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHH
Confidence 211111 011111111 11111100 1135699999999999999999999999999999998764
No 279
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.6e-34 Score=220.79 Aligned_cols=138 Identities=23% Similarity=0.317 Sum_probs=99.8
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCcc-----CCcceEEECCeec-----------ceeeeeecCcccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLR-----LDHGSISLSARTV-----------RDIGYMPQVGLMR 67 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~-----~~~G~i~~~g~~~-----------~~i~~~~q~~~~~ 67 (149)
++++|+||++.+||+++|+||||||||||+++|+|+.. |++|+|.++|.++ +.++|+||++.++
T Consensus 17 ~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~ 96 (250)
T PRK14266 17 HILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNPF 96 (250)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHHhhheEEEecCCccC
Confidence 57999999999999999999999999999999999864 3899999999764 2489999985432
Q ss_pred cCcccccCChhHHHhhc----ccCc---hHHHHHHHhhhhHH---H--HhhcCCCCCChhHHHHHHHHHHHhcCCCEEEE
Q psy10767 68 SGALLAEDSPSYLLEYY----NCST---LEDVFLYLCEQDQI---L--FSLVGSESAFGGQQRRVSFAVSLIHDPKILIL 135 (149)
Q Consensus 68 ~~~~~~~~~~~~~~~~~----~~~~---~~~~~~~~~~~~~~---~--~~~~~~~~~sgGqkqrv~iaral~~~p~illl 135 (149)
. .++.++..+. .... .++.+....+..++ . ........+|+|||||++||||++.+|+++||
T Consensus 97 ~------~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llll 170 (250)
T PRK14266 97 P------KSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILM 170 (250)
T ss_pred c------chHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 2 1344443321 1111 11222233333221 0 01122334699999999999999999999999
Q ss_pred cCCCCCCCcCCC
Q psy10767 136 DEPTVGLDPVLS 147 (149)
Q Consensus 136 DEPt~gLD~~~~ 147 (149)
||||+|||+..+
T Consensus 171 DEP~~gLD~~~~ 182 (250)
T PRK14266 171 DEPCSALDPIST 182 (250)
T ss_pred cCCCccCCHHHH
Confidence 999999999764
No 280
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.2e-34 Score=221.89 Aligned_cols=139 Identities=24% Similarity=0.333 Sum_probs=99.4
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECC------eec---------ceeeeeecCccccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSA------RTV---------RDIGYMPQVGLMRS 68 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g------~~~---------~~i~~~~q~~~~~~ 68 (149)
.+++|+||++.+||+++|+|+||||||||+++|+|+++|++|+|.++| .++ ..++|++|++.+
T Consensus 24 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~~~~~i~~~~q~~~~-- 101 (257)
T PRK14246 24 AILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPNP-- 101 (257)
T ss_pred eeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHHHhcceEEEccCCcc--
Confidence 478999999999999999999999999999999999999997776655 332 358999998432
Q ss_pred CcccccCChhHHHhhc----ccCch---HHHHHHHhhhhHHH-----HhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEc
Q psy10767 69 GALLAEDSPSYLLEYY----NCSTL---EDVFLYLCEQDQIL-----FSLVGSESAFGGQQRRVSFAVSLIHDPKILILD 136 (149)
Q Consensus 69 ~~~~~~~~~~~~~~~~----~~~~~---~~~~~~~~~~~~~~-----~~~~~~~~~sgGqkqrv~iaral~~~p~illlD 136 (149)
+...++.++..+. ..... ...+..+++..++. ........+|+|||||++|||||+.+|+++|||
T Consensus 102 ---~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~P~llllD 178 (257)
T PRK14246 102 ---FPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMD 178 (257)
T ss_pred ---CCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEc
Confidence 3333444444321 11111 12223333332221 011122346999999999999999999999999
Q ss_pred CCCCCCCcCCC
Q psy10767 137 EPTVGLDPVLS 147 (149)
Q Consensus 137 EPt~gLD~~~~ 147 (149)
|||++||+..+
T Consensus 179 EPt~~LD~~~~ 189 (257)
T PRK14246 179 EPTSMIDIVNS 189 (257)
T ss_pred CCCccCCHHHH
Confidence 99999999764
No 281
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.3e-34 Score=226.75 Aligned_cols=138 Identities=25% Similarity=0.373 Sum_probs=99.7
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCcc-----CCcceEEECCeec-----------ceeeeeecCcccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLR-----LDHGSISLSARTV-----------RDIGYMPQVGLMR 67 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~-----~~~G~i~~~g~~~-----------~~i~~~~q~~~~~ 67 (149)
.+++++||++.+||+++|+|+||||||||+++|+|+++ |++|+|.++|.++ +.++|++|+..++
T Consensus 59 ~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~ 138 (305)
T PRK14264 59 HALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVELRKRVGMVFQSPNPF 138 (305)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccHHHHhhceEEEccCCccc
Confidence 47999999999999999999999999999999999986 6899999998754 2489999985322
Q ss_pred cCcccccCChhHHHhhcc----------------cCc---hHHHHHHHhhhhHHH-----HhhcCCCCCChhHHHHHHHH
Q psy10767 68 SGALLAEDSPSYLLEYYN----------------CST---LEDVFLYLCEQDQIL-----FSLVGSESAFGGQQRRVSFA 123 (149)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~----------------~~~---~~~~~~~~~~~~~~~-----~~~~~~~~~sgGqkqrv~ia 123 (149)
. .++.++..+.. ... ..+.+..+++..++. ........+|+|||||++||
T Consensus 139 -----~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~LA 212 (305)
T PRK14264 139 -----P-KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGLSGGQQQRLCIA 212 (305)
T ss_pred -----c-ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccccCCHHHHHHHHHH
Confidence 2 23444333210 000 011222233322210 11122345699999999999
Q ss_pred HHHhcCCCEEEEcCCCCCCCcCCC
Q psy10767 124 VSLIHDPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 124 ral~~~p~illlDEPt~gLD~~~~ 147 (149)
|||+++|+||||||||+|||+..+
T Consensus 213 raL~~~p~lLLLDEPtsgLD~~~~ 236 (305)
T PRK14264 213 RCLAVDPEVILMDEPASALDPIAT 236 (305)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHH
Confidence 999999999999999999998754
No 282
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=100.00 E-value=2.7e-34 Score=218.53 Aligned_cols=132 Identities=29% Similarity=0.316 Sum_probs=96.2
Q ss_pred EEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec----ceeeeeecCcccccCcccccCChhHHHhhcc-
Q psy10767 11 TVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV----RDIGYMPQVGLMRSGALLAEDSPSYLLEYYN- 85 (149)
Q Consensus 11 ~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~----~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~- 85 (149)
|++++||+++|+|+||||||||+++|+|+++|++|+|.++|+++ +.++|++|++.+... ...++.++..+..
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~---~~~tv~~~l~~~~~ 77 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWD---FPISVAHTVMSGRT 77 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchHhhCcEEEecccccccCC---CCccHHHHHHhccc
Confidence 57899999999999999999999999999999999999999764 469999998533111 1123444332210
Q ss_pred -------cCc--hHHHHHHHhhhhHH---HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCCC
Q psy10767 86 -------CST--LEDVFLYLCEQDQI---LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 86 -------~~~--~~~~~~~~~~~~~~---~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~~ 147 (149)
... ..+.+..+++..++ ..... ..+|+|||||++||||++.+|+++||||||++||+..+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~ 149 (223)
T TIGR03771 78 GHIGWLRRPCVADFAAVRDALRRVGLTELADRPV--GELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQ 149 (223)
T ss_pred cccccccCCcHHHHHHHHHHHHHhCCchhhcCCh--hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence 011 12223334444333 22222 34699999999999999999999999999999999765
No 283
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.8e-34 Score=241.40 Aligned_cols=139 Identities=22% Similarity=0.276 Sum_probs=102.9
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeecceeeeeecCcccccCcccccCChhHHHhh
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAEDSPSYLLEY 83 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~ 83 (149)
.+++++||++.+||+++|+||||||||||+|+|+|+++|++|+|.+++. ..++|++|+... .+....++.++...
T Consensus 333 ~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~--~~i~~~~q~~~~---~~~~~~t~~~~~~~ 407 (530)
T PRK15064 333 PLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN--ANIGYYAQDHAY---DFENDLTLFDWMSQ 407 (530)
T ss_pred eeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc--eEEEEEcccccc---cCCCCCcHHHHHHH
Confidence 4789999999999999999999999999999999999999999999885 469999997421 11222344444432
Q ss_pred cc-cCchHHHHHHHhhhhHHH--HhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCCC
Q psy10767 84 YN-CSTLEDVFLYLCEQDQIL--FSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 84 ~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~~ 147 (149)
.. ....++.+..+++.+++. ........+|||||||++||||++.+|++|||||||++||+..+
T Consensus 408 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~ 474 (530)
T PRK15064 408 WRQEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESI 474 (530)
T ss_pred hccCCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHH
Confidence 21 111123333444443321 11222345599999999999999999999999999999999764
No 284
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=3.5e-34 Score=243.13 Aligned_cols=138 Identities=24% Similarity=0.349 Sum_probs=104.9
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec---------ceeeeeecCcccccCccccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV---------RDIGYMPQVGLMRSGALLAE 74 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~---------~~i~~~~q~~~~~~~~~~~~ 74 (149)
++++|+||++++||.++|+|+||||||||+++|+|+++|++|+|.++|.++ +.++|+||++.++.
T Consensus 354 ~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~------ 427 (576)
T TIGR02204 354 PALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFA------ 427 (576)
T ss_pred ccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhceEEccCCcccc------
Confidence 589999999999999999999999999999999999999999999999875 35999999865443
Q ss_pred CChhHHHhhcccCchHHHHHHHhhhhHH---H-------HhhcC--CCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCC
Q psy10767 75 DSPSYLLEYYNCSTLEDVFLYLCEQDQI---L-------FSLVG--SESAFGGQQRRVSFAVSLIHDPKILILDEPTVGL 142 (149)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-------~~~~~--~~~~sgGqkqrv~iaral~~~p~illlDEPt~gL 142 (149)
.++.+|..+......++.....++..+. . +..++ ...+|||||||++||||++++|+++||||||++|
T Consensus 428 ~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~~ililDEpts~l 507 (576)
T TIGR02204 428 ASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSAL 507 (576)
T ss_pred ccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCCCeEEEeCccccc
Confidence 3455565543221122222222222211 1 11111 2347999999999999999999999999999999
Q ss_pred CcCCC
Q psy10767 143 DPVLS 147 (149)
Q Consensus 143 D~~~~ 147 (149)
|+..+
T Consensus 508 D~~~~ 512 (576)
T TIGR02204 508 DAESE 512 (576)
T ss_pred CHHHH
Confidence 99764
No 285
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=2.5e-34 Score=240.89 Aligned_cols=142 Identities=18% Similarity=0.243 Sum_probs=102.4
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccC-CcceEEECCeec----------ceeeeeecCcccccCccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRL-DHGSISLSARTV----------RDIGYMPQVGLMRSGALL 72 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~-~~G~i~~~g~~~----------~~i~~~~q~~~~~~~~~~ 72 (149)
.+++++||++.+||+++|+||||||||||+|+|+|+++| ++|+|+++|+++ +.++|++|+... ..++
T Consensus 274 ~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~--~~l~ 351 (500)
T TIGR02633 274 KRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKR--HGIV 351 (500)
T ss_pred cccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhh--CCcC
Confidence 479999999999999999999999999999999999985 899999999764 248999998410 0122
Q ss_pred ccCChhHHHhhc------c---cCch--HHHHHHHhhhhHHHH--hhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCC
Q psy10767 73 AEDSPSYLLEYY------N---CSTL--EDVFLYLCEQDQILF--SLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPT 139 (149)
Q Consensus 73 ~~~~~~~~~~~~------~---~~~~--~~~~~~~~~~~~~~~--~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt 139 (149)
+..++.++..+. . .... ...+..+++.+++.. .......+|||||||++|||||+.+|++|||||||
T Consensus 352 ~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt 431 (500)
T TIGR02633 352 PILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPT 431 (500)
T ss_pred CCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHHHHHHhhCCCEEEEcCCC
Confidence 333444333221 0 0111 122333444443311 11222356999999999999999999999999999
Q ss_pred CCCCcCCC
Q psy10767 140 VGLDPVLS 147 (149)
Q Consensus 140 ~gLD~~~~ 147 (149)
++||+..+
T Consensus 432 ~~LD~~~~ 439 (500)
T TIGR02633 432 RGVDVGAK 439 (500)
T ss_pred CCcCHhHH
Confidence 99999865
No 286
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=3.1e-34 Score=242.70 Aligned_cols=134 Identities=21% Similarity=0.188 Sum_probs=101.0
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec---------ceeeeeecCcccccCccccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV---------RDIGYMPQVGLMRSGALLAE 74 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~---------~~i~~~~q~~~~~~~~~~~~ 74 (149)
++++|+||++++|+.++|+||||||||||+++|+|+++|++|+|.++|.++ +.++|++|++.++...+..
T Consensus 337 ~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~- 415 (547)
T PRK10522 337 FSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGP- 415 (547)
T ss_pred eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhcc-
Confidence 579999999999999999999999999999999999999999999999876 3599999997655443211
Q ss_pred CChhHHHhhcccCchHHHHHHHhhhhHH---HHhh---cCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCCC
Q psy10767 75 DSPSYLLEYYNCSTLEDVFLYLCEQDQI---LFSL---VGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~---~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~~ 147 (149)
+. ....++......+..+. .... .....+|||||||++||||++++|+++||||||++||+...
T Consensus 416 -----n~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~ 485 (547)
T PRK10522 416 -----EG----KPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFR 485 (547)
T ss_pred -----cc----CchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHH
Confidence 10 01112222222222221 1100 11235799999999999999999999999999999998754
No 287
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=5e-34 Score=222.45 Aligned_cols=133 Identities=17% Similarity=0.272 Sum_probs=96.4
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeecceeeeeecCcccccCcccccCChhHHHhh
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAEDSPSYLLEY 83 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~ 83 (149)
++++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|. +++++|... +....++.++..+
T Consensus 38 ~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g~----~~~~~~~~~-----~~~~~tv~enl~~ 108 (264)
T PRK13546 38 FALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGE----VSVIAISAG-----LSGQLTGIENIEF 108 (264)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCE----EeEEecccC-----CCCCCcHHHHHHH
Confidence 4789999999999999999999999999999999999999999999985 456666532 2223344444432
Q ss_pred c----ccCch--HHHHHHHhhhhHH---HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCCC
Q psy10767 84 Y----NCSTL--EDVFLYLCEQDQI---LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 84 ~----~~~~~--~~~~~~~~~~~~~---~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~~ 147 (149)
. ..... ......+.+..++ .... ...+|+||+||++||||++.+|++|||||||+|||+..+
T Consensus 109 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~ 179 (264)
T PRK13546 109 KMLCMGFKRKEIKAMTPKIIEFSELGEFIYQP--VKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFA 179 (264)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHcCCchhhcCC--cccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHH
Confidence 1 11111 1111222222222 2222 234599999999999999999999999999999998654
No 288
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=3.3e-34 Score=241.24 Aligned_cols=140 Identities=25% Similarity=0.278 Sum_probs=100.1
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCc--cCCcceEEEC-----------------------Ceec----
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRL--RLDHGSISLS-----------------------ARTV---- 54 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~--~~~~G~i~~~-----------------------g~~~---- 54 (149)
++++++||++.+|++++|+||||||||||+|+|+|++ +|++|+|.++ |.++
T Consensus 14 ~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~ 93 (520)
T TIGR03269 14 EVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGEPCPVCGGTLEPEE 93 (520)
T ss_pred EeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccccccccccccccccccc
Confidence 5799999999999999999999999999999999997 7999999986 2110
Q ss_pred ---------------ceeeeeecCcccccCcccccCChhHHHhh----cccCc--hHHHHHHHhhhhHHHH-hhcCCCCC
Q psy10767 55 ---------------RDIGYMPQVGLMRSGALLAEDSPSYLLEY----YNCST--LEDVFLYLCEQDQILF-SLVGSESA 112 (149)
Q Consensus 55 ---------------~~i~~~~q~~~~~~~~~~~~~~~~~~~~~----~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~ 112 (149)
+.++|+||++. .++...++.++..+ ..... ....+..+++.+++.. .......+
T Consensus 94 ~~~~~~~~~~~~~~~~~i~~v~q~~~----~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~L 169 (520)
T TIGR03269 94 VDFWNLSDKLRRRIRKRIAIMLQRTF----ALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIARDL 169 (520)
T ss_pred hhhhccCHHHHHHhhhcEEEEecccc----ccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcCcccC
Confidence 24899999621 12223344444432 11111 1223334444444311 11223456
Q ss_pred ChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCCC
Q psy10767 113 FGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 113 sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~~ 147 (149)
||||||||+|||||+.+|++|||||||++||+..+
T Consensus 170 SgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~ 204 (520)
T TIGR03269 170 SGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTA 204 (520)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHH
Confidence 99999999999999999999999999999999765
No 289
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3e-34 Score=240.07 Aligned_cols=143 Identities=19% Similarity=0.269 Sum_probs=100.3
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeecc----------eeeeeecCcccccCcccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVR----------DIGYMPQVGLMRSGALLA 73 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~~----------~i~~~~q~~~~~~~~~~~ 73 (149)
.+++++||++++||++||+||||||||||+++|+|+.+|++|+|+++|.++. .++|++|+... ..++.
T Consensus 262 ~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~--~~~~~ 339 (491)
T PRK10982 262 PSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGFALVTEERRS--TGIYA 339 (491)
T ss_pred cccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCCEEcCCchhh--CCccc
Confidence 3689999999999999999999999999999999999999999999997652 28899997421 01112
Q ss_pred cCChh-----HHHhhc----cc-Cc--hHHHHHHHhhhhHHH--HhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCC
Q psy10767 74 EDSPS-----YLLEYY----NC-ST--LEDVFLYLCEQDQIL--FSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPT 139 (149)
Q Consensus 74 ~~~~~-----~~~~~~----~~-~~--~~~~~~~~~~~~~~~--~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt 139 (149)
+.+.. ...... .. .. ....+..+++.+++. ........||||||||++||||++.+|+||||||||
T Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~illLDEPt 419 (491)
T PRK10982 340 YLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPT 419 (491)
T ss_pred CCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 22221 111111 10 10 112222333332221 112223356999999999999999999999999999
Q ss_pred CCCCcCCCC
Q psy10767 140 VGLDPVLSF 148 (149)
Q Consensus 140 ~gLD~~~~~ 148 (149)
+|||+..+.
T Consensus 420 ~gLD~~~~~ 428 (491)
T PRK10982 420 RGIDVGAKF 428 (491)
T ss_pred cccChhHHH
Confidence 999998753
No 290
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=7.4e-34 Score=242.19 Aligned_cols=138 Identities=20% Similarity=0.268 Sum_probs=103.7
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec---------ceeeeeecCcccccCccccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV---------RDIGYMPQVGLMRSGALLAE 74 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~---------~~i~~~~q~~~~~~~~~~~~ 74 (149)
++++|+||++++|+.++|+||||||||||+++|+|+++|++|+|.++|.++ +.++|++|++.++ .
T Consensus 349 ~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf------~ 422 (585)
T TIGR01192 349 QGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLF------N 422 (585)
T ss_pred ccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheEEEccCCccC------c
Confidence 579999999999999999999999999999999999999999999999875 3589999985433 2
Q ss_pred CChhHHHhhcccCchHHHHHHHhhhhH---H-------HHhhcC--CCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCC
Q psy10767 75 DSPSYLLEYYNCSTLEDVFLYLCEQDQ---I-------LFSLVG--SESAFGGQQRRVSFAVSLIHDPKILILDEPTVGL 142 (149)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-------~~~~~~--~~~~sgGqkqrv~iaral~~~p~illlDEPt~gL 142 (149)
.++.++..+......++......+..+ . .+...+ ...+|||||||++|||||+++|+++||||||++|
T Consensus 423 ~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~ililDEpts~L 502 (585)
T TIGR01192 423 RSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSAL 502 (585)
T ss_pred ccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCC
Confidence 456666655322111222212211111 0 111111 2347999999999999999999999999999999
Q ss_pred CcCCC
Q psy10767 143 DPVLS 147 (149)
Q Consensus 143 D~~~~ 147 (149)
|+..+
T Consensus 503 D~~~~ 507 (585)
T TIGR01192 503 DVETE 507 (585)
T ss_pred CHHHH
Confidence 98754
No 291
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.1e-34 Score=228.54 Aligned_cols=136 Identities=26% Similarity=0.347 Sum_probs=101.0
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCcc-----CCcceEEECCeec-----------ceeeeeecCcccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLR-----LDHGSISLSARTV-----------RDIGYMPQVGLMR 67 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~-----~~~G~i~~~g~~~-----------~~i~~~~q~~~~~ 67 (149)
++|+|+||+|++||++||+||||||||||+++|+|+.+ |++|+|.++|.++ +.++|+||++..+
T Consensus 96 ~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~~ 175 (329)
T PRK14257 96 HVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPF 175 (329)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCccC
Confidence 57999999999999999999999999999999999986 5799999999875 2499999985433
Q ss_pred cCcccccCChhHHHhhcc----cCchH---HHHHHHhhhhHH-------HHhhcCCCCCChhHHHHHHHHHHHhcCCCEE
Q psy10767 68 SGALLAEDSPSYLLEYYN----CSTLE---DVFLYLCEQDQI-------LFSLVGSESAFGGQQRRVSFAVSLIHDPKIL 133 (149)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~----~~~~~---~~~~~~~~~~~~-------~~~~~~~~~~sgGqkqrv~iaral~~~p~il 133 (149)
..++.++..+.. ....+ ......++...+ ... ....+|||||||++||||++.+|+||
T Consensus 176 ------~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~--~~~~LSgGqkqRl~LARAl~~~p~Il 247 (329)
T PRK14257 176 ------EMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDK--AGNALSGGQQQRLCIARAIALEPEVL 247 (329)
T ss_pred ------CCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhC--CcccCCHHHHHHHHHHHHHHhCCCEE
Confidence 234555554311 11111 112222222211 122 22346999999999999999999999
Q ss_pred EEcCCCCCCCcCCC
Q psy10767 134 ILDEPTVGLDPVLS 147 (149)
Q Consensus 134 llDEPt~gLD~~~~ 147 (149)
||||||++||+...
T Consensus 248 LLDEPts~LD~~~~ 261 (329)
T PRK14257 248 LMDEPTSALDPIAT 261 (329)
T ss_pred EEeCCcccCCHHHH
Confidence 99999999998754
No 292
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=100.00 E-value=6.1e-34 Score=215.52 Aligned_cols=132 Identities=17% Similarity=0.160 Sum_probs=94.4
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEE-ECCeecceeeeeecCcccccCcccccCChhHHHh
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSIS-LSARTVRDIGYMPQVGLMRSGALLAEDSPSYLLE 82 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~-~~g~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~ 82 (149)
++++|+||++++|++++|+||||||||||+++|+|+++|++|+|. +++..+ .++ +. +.+++..++.++..
T Consensus 1 ~vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~-~~~---~~-----~~l~~~ltv~enl~ 71 (213)
T PRK15177 1 VVLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDAL-PLG---AN-----SFILPGLTGEENAR 71 (213)
T ss_pred CeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCcee-ccc---cc-----cccCCcCcHHHHHH
Confidence 468999999999999999999999999999999999999999997 776432 122 22 22334445555554
Q ss_pred hc----ccCchHHHHHHHhhhhHH---HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCCC
Q psy10767 83 YY----NCSTLEDVFLYLCEQDQI---LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 83 ~~----~~~~~~~~~~~~~~~~~~---~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~~ 147 (149)
+. ... ..+....+.+..++ .+..... +|+|||||++||||++.+|+++||||||+++|+..+
T Consensus 72 ~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~--lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~ 140 (213)
T PRK15177 72 MMASLYGLD-GDEFSHFCYQLTQLEQCYTDRVSE--YSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQ 140 (213)
T ss_pred HHHHHcCCC-HHHHHHHHHHHhChhHHhhchHhh--cCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHH
Confidence 32 111 11111111111111 2333444 499999999999999999999999999999998654
No 293
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=6.1e-34 Score=241.28 Aligned_cols=137 Identities=23% Similarity=0.259 Sum_probs=98.2
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeecceeeeeecCcccccCcccccCChhHHHhh
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAEDSPSYLLEY 83 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~ 83 (149)
++++|+||++++|++++|+||||||||||+++|+|+++|++|+|.+++. ..|+|++|++.+ +...++.++..+
T Consensus 19 ~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~--~~i~~v~Q~~~~-----~~~~tv~e~i~~ 91 (552)
T TIGR03719 19 EILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPG--IKVGYLPQEPQL-----DPTKTVRENVEE 91 (552)
T ss_pred eeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC--CEEEEEeccCCC-----CCCCcHHHHHHH
Confidence 5799999999999999999999999999999999999999999999763 479999998533 223344443322
Q ss_pred cc------------------cCchH------------------------HHHHHHhhhhHHHHhhcCCCCCChhHHHHHH
Q psy10767 84 YN------------------CSTLE------------------------DVFLYLCEQDQILFSLVGSESAFGGQQRRVS 121 (149)
Q Consensus 84 ~~------------------~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~sgGqkqrv~ 121 (149)
.. ....+ ..+..+++..++.........+|||||||++
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkqrv~ 171 (552)
T TIGR03719 92 GVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPWDADVTKLSGGERRRVA 171 (552)
T ss_pred hhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCcccCchhhcCHHHHHHHH
Confidence 00 00000 0011111111110001122346999999999
Q ss_pred HHHHHhcCCCEEEEcCCCCCCCcCCC
Q psy10767 122 FAVSLIHDPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 122 iaral~~~p~illlDEPt~gLD~~~~ 147 (149)
|||||+.+|++|||||||++||+..+
T Consensus 172 la~al~~~p~lLLLDEPt~~LD~~~~ 197 (552)
T TIGR03719 172 LCRLLLSKPDMLLLDEPTNHLDAESV 197 (552)
T ss_pred HHHHHhcCCCEEEEcCCCCCCChHHH
Confidence 99999999999999999999999765
No 294
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=4e-34 Score=211.22 Aligned_cols=93 Identities=26% Similarity=0.341 Sum_probs=84.3
Q ss_pred ceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeecceeeeeecCcccccCcccccCChhHHHhhc
Q psy10767 5 SASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAEDSPSYLLEYY 84 (149)
Q Consensus 5 ~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~ 84 (149)
++++ +|++++||+++|+||||||||||+|+|+|+++|++|+|.++|. .++|++|...
T Consensus 15 ~l~~-~~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~---~i~~~~q~~~------------------- 71 (177)
T cd03222 15 LLVE-LGVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGI---TPVYKPQYID------------------- 71 (177)
T ss_pred EEcc-CcEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCE---EEEEEcccCC-------------------
Confidence 4666 4899999999999999999999999999999999999999986 3788887520
Q ss_pred ccCchHHHHHHHhhhhHHHHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCCC
Q psy10767 85 NCSTLEDVFLYLCEQDQILFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~~ 147 (149)
+|+|||||++||||++.+|++++|||||++||+..+
T Consensus 72 ---------------------------LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~~ 107 (177)
T cd03222 72 ---------------------------LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQR 107 (177)
T ss_pred ---------------------------CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHH
Confidence 499999999999999999999999999999998764
No 295
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=3.6e-34 Score=210.03 Aligned_cols=137 Identities=26% Similarity=0.299 Sum_probs=101.5
Q ss_pred ceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeecc----------------------eeeeeec
Q psy10767 5 SASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVR----------------------DIGYMPQ 62 (149)
Q Consensus 5 ~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~~----------------------~i~~~~q 62 (149)
+|+++|++..+|+++.|||.|||||||+||||.=+..|+.|.|.++|+.++ ..++|||
T Consensus 21 VLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~Rs~L~mVFQ 100 (256)
T COG4598 21 VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQ 100 (256)
T ss_pred hhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeCCHHHHHHHHHHhhHhhh
Confidence 689999999999999999999999999999999999999999999997651 2577777
Q ss_pred CcccccCcccccCChhHHHhh-----cccC--chHHHHHHHhhhhHHHH-hhcCCCCCChhHHHHHHHHHHHhcCCCEEE
Q psy10767 63 VGLMRSGALLAEDSPSYLLEY-----YNCS--TLEDVFLYLCEQDQILF-SLVGSESAFGGQQRRVSFAVSLIHDPKILI 134 (149)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~-----~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~sgGqkqrv~iaral~~~p~ill 134 (149)
+ ..+-..+++-+|... .+.. ...+.+..++..+++.. .......+||||+||++|||||+.+|++++
T Consensus 101 ~-----FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~aIARaLameP~vmL 175 (256)
T COG4598 101 H-----FNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIARALAMEPEVML 175 (256)
T ss_pred h-----cchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHHHHHHHHhcCCceEe
Confidence 6 222233333333211 1111 11233344444555422 223344569999999999999999999999
Q ss_pred EcCCCCCCCcCC
Q psy10767 135 LDEPTVGLDPVL 146 (149)
Q Consensus 135 lDEPt~gLD~~~ 146 (149)
+|||||+|||..
T Consensus 176 FDEPTSALDPEl 187 (256)
T COG4598 176 FDEPTSALDPEL 187 (256)
T ss_pred ecCCcccCCHHH
Confidence 999999999964
No 296
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-33 Score=219.63 Aligned_cols=136 Identities=32% Similarity=0.440 Sum_probs=98.9
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccC-----CcceEEECCeec-------------ceeeeeecCcc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRL-----DHGSISLSARTV-------------RDIGYMPQVGL 65 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~-----~~G~i~~~g~~~-------------~~i~~~~q~~~ 65 (149)
.+++|+||++++||+++|+|+||||||||+++|+|+.+| ++|+|.++|.++ +.++|++|++.
T Consensus 30 ~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~ 109 (265)
T PRK14252 30 QALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRISMVFQKPN 109 (265)
T ss_pred eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccCHHHHhccEEEEccCCc
Confidence 479999999999999999999999999999999999875 799999987532 24899999843
Q ss_pred cccCcccccCChhHHHhhc----ccC---chHHHHHHHhhhhHH-------HHhhcCCCCCChhHHHHHHHHHHHhcCCC
Q psy10767 66 MRSGALLAEDSPSYLLEYY----NCS---TLEDVFLYLCEQDQI-------LFSLVGSESAFGGQQRRVSFAVSLIHDPK 131 (149)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~----~~~---~~~~~~~~~~~~~~~-------~~~~~~~~~~sgGqkqrv~iaral~~~p~ 131 (149)
++ .. ++.++..+. ... ..++....+++..+. ..+. ...+|+|||||++|||||+.+|+
T Consensus 110 ~~-----~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--~~~LS~G~~qrv~laral~~~p~ 181 (265)
T PRK14252 110 PF-----PK-SIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDL--AFNLSGGQQQRLCIARALATDPE 181 (265)
T ss_pred CC-----cc-hHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCC--cccCCHHHHHHHHHHHHHHcCCC
Confidence 32 22 444444321 111 011222222222221 1222 23469999999999999999999
Q ss_pred EEEEcCCCCCCCcCCC
Q psy10767 132 ILILDEPTVGLDPVLS 147 (149)
Q Consensus 132 illlDEPt~gLD~~~~ 147 (149)
++||||||+|||+..+
T Consensus 182 llllDEPt~gLD~~~~ 197 (265)
T PRK14252 182 ILLFDEPTSALDPIAT 197 (265)
T ss_pred EEEEeCCCccCCHHHH
Confidence 9999999999998764
No 297
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=1e-33 Score=245.27 Aligned_cols=138 Identities=27% Similarity=0.342 Sum_probs=105.2
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeecc---------eeeeeecCcccccCccccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVR---------DIGYMPQVGLMRSGALLAE 74 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~~---------~i~~~~q~~~~~~~~~~~~ 74 (149)
++++|+||++++|+.++|+|+||||||||+++|+|+++|++|+|.++|.+++ .++|++|++.++.
T Consensus 471 ~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~------ 544 (694)
T TIGR01846 471 EVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFS------ 544 (694)
T ss_pred cccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCeEEccCCeehh------
Confidence 4799999999999999999999999999999999999999999999998863 4899999854433
Q ss_pred CChhHHHhhcccCchHHHHHHHhhhhHH---H-------HhhcC--CCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCC
Q psy10767 75 DSPSYLLEYYNCSTLEDVFLYLCEQDQI---L-------FSLVG--SESAFGGQQRRVSFAVSLIHDPKILILDEPTVGL 142 (149)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-------~~~~~--~~~~sgGqkqrv~iaral~~~p~illlDEPt~gL 142 (149)
.++.+|..+......++...++++..+. . +..++ ...+|||||||++||||++++|+++||||||++|
T Consensus 545 ~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~ililDEpts~L 624 (694)
T TIGR01846 545 RSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSAL 624 (694)
T ss_pred hhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCC
Confidence 3556666543222222222222222211 1 11111 2357999999999999999999999999999999
Q ss_pred CcCCC
Q psy10767 143 DPVLS 147 (149)
Q Consensus 143 D~~~~ 147 (149)
|+...
T Consensus 625 D~~~~ 629 (694)
T TIGR01846 625 DYESE 629 (694)
T ss_pred CHHHH
Confidence 98754
No 298
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=6.4e-34 Score=241.25 Aligned_cols=135 Identities=19% Similarity=0.175 Sum_probs=101.4
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeecc---------eeeeeecCcccccCccccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVR---------DIGYMPQVGLMRSGALLAE 74 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~~---------~i~~~~q~~~~~~~~~~~~ 74 (149)
++++|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.+++ .+++++|++.++...+.
T Consensus 356 ~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~-- 433 (555)
T TIGR01194 356 FALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIG-- 433 (555)
T ss_pred ceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhh--
Confidence 5899999999999999999999999999999999999999999999998763 48999998655443321
Q ss_pred CChhHHHhhcccCchHHHHHHHhhhhHH---HHhhcC----CCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCCC
Q psy10767 75 DSPSYLLEYYNCSTLEDVFLYLCEQDQI---LFSLVG----SESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~----~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~~ 147 (149)
++. .....++....+++..+. ...... ...+|||||||++||||++.+|+++||||||++||+..+
T Consensus 434 ----~n~---~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~ 506 (555)
T TIGR01194 434 ----PDE---GEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFK 506 (555)
T ss_pred ----ccc---ccchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHH
Confidence 111 001112222233333222 111111 135799999999999999999999999999999999764
No 299
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=9.4e-34 Score=260.06 Aligned_cols=137 Identities=25% Similarity=0.331 Sum_probs=107.0
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccC-----------------------------------------
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRL----------------------------------------- 42 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~----------------------------------------- 42 (149)
++|+|+||+|++|+.+||+||||||||||+++|+|+++|
T Consensus 1182 ~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1261 (1466)
T PTZ00265 1182 PIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLT 1261 (1466)
T ss_pred ccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccccccccccccccccccccccc
Confidence 689999999999999999999999999999999999998
Q ss_pred -------------CcceEEECCeec---------ceeeeeecCcccccCcccccCChhHHHhhcccCchHHHHHHHhhhh
Q psy10767 43 -------------DHGSISLSARTV---------RDIGYMPQVGLMRSGALLAEDSPSYLLEYYNCSTLEDVFLYLCEQD 100 (149)
Q Consensus 43 -------------~~G~i~~~g~~~---------~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (149)
++|+|.++|.++ +.|+||+|++.++ ..++.+|..+......++.+..+++..
T Consensus 1262 ~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF------~gTIreNI~~g~~~at~eeI~~A~k~A 1335 (1466)
T PTZ00265 1262 KEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLF------NMSIYENIKFGKEDATREDVKRACKFA 1335 (1466)
T ss_pred cccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccc------cccHHHHHhcCCCCCCHHHHHHHHHHc
Confidence 699999999987 3599999995443 345667776643222233333333322
Q ss_pred HH----------HHhhcCC--CCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCC
Q psy10767 101 QI----------LFSLVGS--ESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVL 146 (149)
Q Consensus 101 ~~----------~~~~~~~--~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~ 146 (149)
+. .+..++. ..||||||||++|||||+++|+|||||||||+||+.+
T Consensus 1336 ~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~s 1393 (1466)
T PTZ00265 1336 AIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNS 1393 (1466)
T ss_pred CCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHH
Confidence 21 1222332 3479999999999999999999999999999999875
No 300
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=9.1e-34 Score=240.21 Aligned_cols=138 Identities=23% Similarity=0.222 Sum_probs=101.5
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeecceeeeeecCcccccCcccccCChhHHHhh
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAEDSPSYLLEY 83 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~ 83 (149)
.+++|+||+|.+|++++|+||||||||||+++|+|+.+|++|+|++++. ..|+|++|+.. .+....++.++..+
T Consensus 336 ~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~~--~~i~~v~q~~~----~~~~~~tv~e~l~~ 409 (552)
T TIGR03719 336 LLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGET--VKLAYVDQSRD----ALDPNKTVWEEISG 409 (552)
T ss_pred eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECCc--eEEEEEeCCcc----ccCCCCcHHHHHHh
Confidence 4789999999999999999999999999999999999999999999542 26999999741 12334455555443
Q ss_pred cc----cCchHHHHHHHhhhhHHHH--hhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCCC
Q psy10767 84 YN----CSTLEDVFLYLCEQDQILF--SLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 84 ~~----~~~~~~~~~~~~~~~~~~~--~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~~ 147 (149)
.. ....+.....+++.+++.. .......+|||||||++|||||+.+|++|||||||+|||+..+
T Consensus 410 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~ 479 (552)
T TIGR03719 410 GLDIIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETL 479 (552)
T ss_pred hccccccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Confidence 21 1111111223333333311 1122335699999999999999999999999999999998764
No 301
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=8e-34 Score=236.62 Aligned_cols=144 Identities=24% Similarity=0.266 Sum_probs=103.4
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCC----cceEEECCeec-------------ceeeeeecCccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLD----HGSISLSARTV-------------RDIGYMPQVGLM 66 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~----~G~i~~~g~~~-------------~~i~~~~q~~~~ 66 (149)
.+++||||++.+||++||+|+|||||||+.++|.|+.++. +|+|.++|.++ ++|+++||++.-
T Consensus 23 ~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~~ 102 (539)
T COG1123 23 PAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMT 102 (539)
T ss_pred eeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCchh
Confidence 4899999999999999999999999999999999999887 79999999865 469999998631
Q ss_pred -ccCcccccCChhHHHhhcccC---chHHHHHHHhhhhHH---HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCC
Q psy10767 67 -RSGALLAEDSPSYLLEYYNCS---TLEDVFLYLCEQDQI---LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPT 139 (149)
Q Consensus 67 -~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~---~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt 139 (149)
.++.......+.+........ .....+.++++.+++ .......-.+||||||||.||+||+++|++||+||||
T Consensus 103 slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEPT 182 (539)
T COG1123 103 SLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPT 182 (539)
T ss_pred hcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHHHHHHHHhCCCCEEEECCCc
Confidence 111111111122222222211 123334444454444 1111123345999999999999999999999999999
Q ss_pred CCCCcCCC
Q psy10767 140 VGLDPVLS 147 (149)
Q Consensus 140 ~gLD~~~~ 147 (149)
++||+..+
T Consensus 183 TaLDvt~q 190 (539)
T COG1123 183 TALDVTTQ 190 (539)
T ss_pred cccCHHHH
Confidence 99998754
No 302
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=1.1e-33 Score=239.98 Aligned_cols=138 Identities=22% Similarity=0.226 Sum_probs=101.5
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeecceeeeeecCcccccCcccccCChhHHHhh
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAEDSPSYLLEY 83 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~ 83 (149)
++++|+||+|.+||+++|+||||||||||+++|+|+++|++|+|++++. ..++|++|+.. .+....++.++..+
T Consensus 338 ~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~--~~i~~v~q~~~----~~~~~~tv~e~l~~ 411 (556)
T PRK11819 338 LLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGET--VKLAYVDQSRD----ALDPNKTVWEEISG 411 (556)
T ss_pred eeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc--eEEEEEeCchh----hcCCCCCHHHHHHh
Confidence 4789999999999999999999999999999999999999999999542 26999999741 22334455555443
Q ss_pred cc----cCchHHHHHHHhhhhHHHH--hhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCCC
Q psy10767 84 YN----CSTLEDVFLYLCEQDQILF--SLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 84 ~~----~~~~~~~~~~~~~~~~~~~--~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~~ 147 (149)
.. ..........+++.+++.. .......+|||||||++||||++.+|++|||||||+|||+..+
T Consensus 412 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~ 481 (556)
T PRK11819 412 GLDIIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETL 481 (556)
T ss_pred hcccccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHH
Confidence 21 1111111223333333311 1122335699999999999999999999999999999998764
No 303
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=7.8e-34 Score=219.03 Aligned_cols=115 Identities=27% Similarity=0.430 Sum_probs=91.4
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeecceeeeeecCcccccCcccccCChhHHHhh
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAEDSPSYLLEY 83 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~ 83 (149)
.+++||||++++||++||+|+|||||||+-|+|.|+++|++|+|+++|+++..+.
T Consensus 27 ~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~------------------------- 81 (268)
T COG4608 27 KAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS------------------------- 81 (268)
T ss_pred EEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc-------------------------
Confidence 4789999999999999999999999999999999999999999999998643332
Q ss_pred cccCchHHHHHHHhhhhHH----HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCCC
Q psy10767 84 YNCSTLEDVFLYLCEQDQI----LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~~ 147 (149)
.....+.+.+.++.++. ..+..+. +||||+||++|||||+.+|+++++|||+|+||...+
T Consensus 82 --~~~~~~~v~elL~~Vgl~~~~~~ryPhe--lSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiq 145 (268)
T COG4608 82 --KEERRERVLELLEKVGLPEEFLYRYPHE--LSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQ 145 (268)
T ss_pred --hhHHHHHHHHHHHHhCCCHHHhhcCCcc--cCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHH
Confidence 00112223333333332 3334444 499999999999999999999999999999998654
No 304
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=3.2e-33 Score=240.93 Aligned_cols=139 Identities=27% Similarity=0.391 Sum_probs=104.7
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCC--cceEEECCeec-----ceeeeeecCcccccCcccccCC
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLD--HGSISLSARTV-----RDIGYMPQVGLMRSGALLAEDS 76 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~--~G~i~~~g~~~-----~~i~~~~q~~~~~~~~~~~~~~ 76 (149)
.+++|+|+++++||++||+||||||||||+++|+|..+|+ +|+|.++|++. +.++|++|++.+ .+..+
T Consensus 82 ~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~~~l-----~~~lT 156 (659)
T PLN03211 82 TILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQDDIL-----YPHLT 156 (659)
T ss_pred eeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchhhccceEEECccccc-----CCcCC
Confidence 4899999999999999999999999999999999999885 89999999864 459999998533 33445
Q ss_pred hhHHHhhc---cc--C-ch---HHHHHHHhhhhHHHH---hhc---CCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCC
Q psy10767 77 PSYLLEYY---NC--S-TL---EDVFLYLCEQDQILF---SLV---GSESAFGGQQRRVSFAVSLIHDPKILILDEPTVG 141 (149)
Q Consensus 77 ~~~~~~~~---~~--~-~~---~~~~~~~~~~~~~~~---~~~---~~~~~sgGqkqrv~iaral~~~p~illlDEPt~g 141 (149)
+.++..+. .. . .. .+....+++..++.. ..+ ....+|||||||++|||+|+.+|+|++|||||+|
T Consensus 157 V~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsg 236 (659)
T PLN03211 157 VRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSG 236 (659)
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCC
Confidence 55555432 11 1 11 122333444333311 111 1235699999999999999999999999999999
Q ss_pred CCcCCC
Q psy10767 142 LDPVLS 147 (149)
Q Consensus 142 LD~~~~ 147 (149)
||+..+
T Consensus 237 LD~~~~ 242 (659)
T PLN03211 237 LDATAA 242 (659)
T ss_pred cCHHHH
Confidence 998764
No 305
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=1.9e-33 Score=261.45 Aligned_cols=138 Identities=28% Similarity=0.451 Sum_probs=107.9
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec--------ceeeeeecCcccccCcccccC
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV--------RDIGYMPQVGLMRSGALLAED 75 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~--------~~i~~~~q~~~~~~~~~~~~~ 75 (149)
++++|+||+|++||++||+||||||||||+|+|+|+++|++|+|+++|.++ +.|||+||.+ .+....
T Consensus 1953 ~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~IGy~pQ~~-----~L~~~L 2027 (2272)
T TIGR01257 1953 PAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNMGYCPQFD-----AIDDLL 2027 (2272)
T ss_pred eEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhhhEEEEeccc-----cCCCCC
Confidence 589999999999999999999999999999999999999999999999875 3599999984 334445
Q ss_pred ChhHHHhhc----ccCc--hHHHHHHHhhhhHH---HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCC
Q psy10767 76 SPSYLLEYY----NCST--LEDVFLYLCEQDQI---LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVL 146 (149)
Q Consensus 76 ~~~~~~~~~----~~~~--~~~~~~~~~~~~~~---~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~ 146 (149)
++.++..++ +... .++...++++..++ .++... .+|||||||++||+||+.+|+|++|||||+||||..
T Consensus 2028 Tv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~--~LSGGqKqRLslA~ALi~~P~VLLLDEPTsGLDp~s 2105 (2272)
T TIGR01257 2028 TGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAG--TYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQA 2105 (2272)
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChh--hCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHH
Confidence 666665442 2111 12233334444433 233334 459999999999999999999999999999999987
Q ss_pred CC
Q psy10767 147 SF 148 (149)
Q Consensus 147 ~~ 148 (149)
|+
T Consensus 2106 r~ 2107 (2272)
T TIGR01257 2106 RR 2107 (2272)
T ss_pred HH
Confidence 64
No 306
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=100.00 E-value=3.9e-33 Score=228.41 Aligned_cols=136 Identities=25% Similarity=0.268 Sum_probs=109.6
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec----------ceeeeeecCcccccCcccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV----------RDIGYMPQVGLMRSGALLA 73 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~----------~~i~~~~q~~~~~~~~~~~ 73 (149)
++.++|||++.+|||+||+|+||||||||+++|.|+++|++|+|+++|+.+ ..||+|+|+ +.+++
T Consensus 18 ~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQH-----F~Lv~ 92 (501)
T COG3845 18 VANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQH-----FMLVP 92 (501)
T ss_pred EecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCCcEEeec-----ccccc
Confidence 478999999999999999999999999999999999999999999999876 249999998 67777
Q ss_pred cCChhHHHhhcccC------c---hHHHHHHHhhhhHH---HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCC
Q psy10767 74 EDSPSYLLEYYNCS------T---LEDVFLYLCEQDQI---LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVG 141 (149)
Q Consensus 74 ~~~~~~~~~~~~~~------~---~~~~~~~~~~~~~~---~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~g 141 (149)
..++.+|....... . ....+.++.+..++ .+..+..+ |-||||||.|.+||.++|++|||||||+-
T Consensus 93 ~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dL--sVG~qQRVEIlKaLyr~a~iLILDEPTaV 170 (501)
T COG3845 93 TLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADL--SVGEQQRVEILKALYRGARLLILDEPTAV 170 (501)
T ss_pred ccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecC--CcchhHHHHHHHHHhcCCCEEEEcCCccc
Confidence 88888876553211 1 12233333344333 34444544 89999999999999999999999999999
Q ss_pred CCcCC
Q psy10767 142 LDPVL 146 (149)
Q Consensus 142 LD~~~ 146 (149)
|-|..
T Consensus 171 LTP~E 175 (501)
T COG3845 171 LTPQE 175 (501)
T ss_pred CCHHH
Confidence 98853
No 307
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=3.7e-33 Score=237.98 Aligned_cols=133 Identities=26% Similarity=0.303 Sum_probs=100.2
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeecceeeeeecCcccccCcccccCChhHHHhh
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAEDSPSYLLEY 83 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~ 83 (149)
+.++++||++.+||+++|+||||||||||+|+|+|+.+|++|+|.++ .+++|+||+.. .....++.++...
T Consensus 353 ~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~----~~i~y~~Q~~~-----~~~~~tv~e~l~~ 423 (590)
T PRK13409 353 FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE----LKISYKPQYIK-----PDYDGTVEDLLRS 423 (590)
T ss_pred EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe----eeEEEeccccc-----CCCCCcHHHHHHH
Confidence 35889999999999999999999999999999999999999999986 36999999843 2234455555433
Q ss_pred cc-cCchHHHHHHHhhhhHH---HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCCC
Q psy10767 84 YN-CSTLEDVFLYLCEQDQI---LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 84 ~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~~ 147 (149)
.. ..........+++.+++ ..+.+ ..|||||||||+|||||+.+|++|||||||++||+..+
T Consensus 424 ~~~~~~~~~~~~~~L~~l~l~~~~~~~~--~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~ 489 (590)
T PRK13409 424 ITDDLGSSYYKSEIIKPLQLERLLDKNV--KDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQR 489 (590)
T ss_pred HhhhcChHHHHHHHHHHCCCHHHHhCCc--ccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHH
Confidence 21 00111122333333332 23333 34599999999999999999999999999999999765
No 308
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=1.5e-33 Score=235.62 Aligned_cols=141 Identities=26% Similarity=0.296 Sum_probs=99.3
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccC-CcceEEECCeec----------ceeeeeecCcccccCccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRL-DHGSISLSARTV----------RDIGYMPQVGLMRSGALL 72 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~-~~G~i~~~g~~~----------~~i~~~~q~~~~~~~~~~ 72 (149)
.+++|+||++.+||+++|+||||||||||+|+|+|+.++ ++|+|+++|+++ +.++|++|+.......
T Consensus 274 ~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~-- 351 (490)
T PRK10938 274 PILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRV-- 351 (490)
T ss_pred eEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhhceEECHHHHhhccc--
Confidence 478999999999999999999999999999999998865 699999998642 2489999974321110
Q ss_pred ccCChhHHHhh--c------cc-Cc-hHHHHHHHhhhhHHHH--hhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCC
Q psy10767 73 AEDSPSYLLEY--Y------NC-ST-LEDVFLYLCEQDQILF--SLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTV 140 (149)
Q Consensus 73 ~~~~~~~~~~~--~------~~-~~-~~~~~~~~~~~~~~~~--~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~ 140 (149)
..+..++... . .. .. .++.+..+++.+++.. .......||||||||++|||||+.+|++|||||||+
T Consensus 352 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~ 430 (490)
T PRK10938 352 -STSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALVKHPTLLILDEPLQ 430 (490)
T ss_pred -CCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCccc
Confidence 1122222111 0 00 11 1223334444444321 122234569999999999999999999999999999
Q ss_pred CCCcCCC
Q psy10767 141 GLDPVLS 147 (149)
Q Consensus 141 gLD~~~~ 147 (149)
|||+..+
T Consensus 431 gLD~~~~ 437 (490)
T PRK10938 431 GLDPLNR 437 (490)
T ss_pred cCCHHHH
Confidence 9999765
No 309
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.2e-33 Score=230.33 Aligned_cols=136 Identities=24% Similarity=0.233 Sum_probs=108.2
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec----------ceeeeeecCcccccCcccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV----------RDIGYMPQVGLMRSGALLA 73 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~----------~~i~~~~q~~~~~~~~~~~ 73 (149)
.+|+++||++.+||++||+|.||||||||+|+|+|.++|++|+|.++|+.+ ..|..++|+ ..+++
T Consensus 22 ~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI~~V~QE-----l~L~p 96 (500)
T COG1129 22 KALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGIATVHQE-----LSLVP 96 (500)
T ss_pred eeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCcEEEeec-----hhccC
Confidence 589999999999999999999999999999999999999999999999876 248999998 56777
Q ss_pred cCChhHHHhhccc----------CchHHHHHHHhhhhHH---HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCC
Q psy10767 74 EDSPSYLLEYYNC----------STLEDVFLYLCEQDQI---LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTV 140 (149)
Q Consensus 74 ~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~---~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~ 140 (149)
+.++.+|.-+-.. ......+..++...+. ...++..+ |.||||.|+||||+..+++|+||||||+
T Consensus 97 ~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~L--siaqrQ~VeIArAl~~~arllIlDEPTa 174 (500)
T COG1129 97 NLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDL--SIAQRQMVEIARALSFDARVLILDEPTA 174 (500)
T ss_pred CccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhC--CHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 8888877643211 1112233333333322 34444444 9999999999999999999999999999
Q ss_pred CCCcCC
Q psy10767 141 GLDPVL 146 (149)
Q Consensus 141 gLD~~~ 146 (149)
+|+...
T Consensus 175 aLt~~E 180 (500)
T COG1129 175 ALTVKE 180 (500)
T ss_pred cCCHHH
Confidence 998753
No 310
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.4e-33 Score=240.17 Aligned_cols=137 Identities=28% Similarity=0.371 Sum_probs=99.8
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeecceeeeeecCcccccCcccccCChhHHHhh
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAEDSPSYLLEY 83 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~ 83 (149)
.+++|+||+|.+|+++||+||||||||||+|+|+|+++|++|+|.+++. .+++|++|+.. ..+....++.+....
T Consensus 326 ~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~--~~igy~~Q~~~---~~l~~~~~~~~~~~~ 400 (638)
T PRK10636 326 IILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG--IKLGYFAQHQL---EFLRADESPLQHLAR 400 (638)
T ss_pred eeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC--EEEEEecCcch---hhCCccchHHHHHHH
Confidence 4789999999999999999999999999999999999999999999643 36999999631 111222333332211
Q ss_pred cccCchHHHHHHHhhhhHH----HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCCC
Q psy10767 84 YNCSTLEDVFLYLCEQDQI----LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~~ 147 (149)
.........+..++..+++ ..+.+. .|||||||||+|||+|+.+|++|||||||++||+..+
T Consensus 401 ~~~~~~~~~~~~~L~~~~l~~~~~~~~~~--~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~ 466 (638)
T PRK10636 401 LAPQELEQKLRDYLGGFGFQGDKVTEETR--RFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMR 466 (638)
T ss_pred hCchhhHHHHHHHHHHcCCChhHhcCchh--hCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHH
Confidence 1111112223333333332 222333 4599999999999999999999999999999998764
No 311
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=2.8e-33 Score=260.32 Aligned_cols=140 Identities=26% Similarity=0.405 Sum_probs=108.4
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec--------ceeeeeecCcccccCcccccC
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV--------RDIGYMPQVGLMRSGALLAED 75 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~--------~~i~~~~q~~~~~~~~~~~~~ 75 (149)
.+++|+||++.+||+++|+||||||||||+|+|+|+++|++|+|+++|.++ +.+||+||+. .+....
T Consensus 944 ~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~IG~~pQ~~-----~L~~~L 1018 (2272)
T TIGR01257 944 PAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLGMCPQHN-----ILFHHL 1018 (2272)
T ss_pred eEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhhcEEEEecCC-----cCCCCC
Confidence 579999999999999999999999999999999999999999999999875 3599999984 344456
Q ss_pred ChhHHHhhc----ccCc--hHHHHHHHhhhhHHHH-hhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCCCC
Q psy10767 76 SPSYLLEYY----NCST--LEDVFLYLCEQDQILF-SLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLSF 148 (149)
Q Consensus 76 ~~~~~~~~~----~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~~~ 148 (149)
++.++..++ +... .++.+..+++..++.. .......||||||||++|||||+.+|+++||||||+|||+..+.
T Consensus 1019 TV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~ 1098 (2272)
T TIGR01257 1019 TVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRR 1098 (2272)
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHH
Confidence 666666543 1111 1223334444444311 12223345999999999999999999999999999999998764
No 312
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=5.1e-33 Score=238.99 Aligned_cols=136 Identities=26% Similarity=0.345 Sum_probs=101.1
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeecceeeeeecCcccccCcccccCChhHHHhh
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAEDSPSYLLEY 83 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~ 83 (149)
.+++++||+|.+|+++||+||||||||||+++|+|+++|++|+|++ |.++ .|+|++|+.. .+.+..++.++...
T Consensus 333 ~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~-~i~y~~q~~~----~l~~~~tv~e~l~~ 406 (635)
T PRK11147 333 QLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKL-EVAYFDQHRA----ELDPEKTVMDNLAE 406 (635)
T ss_pred EEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCc-EEEEEeCccc----ccCCCCCHHHHHHh
Confidence 4789999999999999999999999999999999999999999999 4332 6999999731 23334455555443
Q ss_pred cc--c--CchHHHHHHHhhhhHH----HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCCC
Q psy10767 84 YN--C--STLEDVFLYLCEQDQI----LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 84 ~~--~--~~~~~~~~~~~~~~~~----~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~~ 147 (149)
.. . ......+..++..+++ ..+.+. .||||||||++|||+++.+|++|||||||++||+..+
T Consensus 407 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~--~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~~~~ 476 (635)
T PRK11147 407 GKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVK--ALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETL 476 (635)
T ss_pred hcccccccchHHHHHHHHHhcCCCHHHHhChhh--hCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHH
Confidence 21 1 1112222233332222 233333 4599999999999999999999999999999998754
No 313
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=8.1e-33 Score=238.60 Aligned_cols=136 Identities=22% Similarity=0.286 Sum_probs=101.5
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeecceeeeeecCcccccCcccccCChhHHHhh
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAEDSPSYLLEY 83 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~ 83 (149)
++++++||++++||+++|+||||||||||+++|+|+++|++|+|.+++. +.++|++|++.++. . ++.++..+
T Consensus 466 ~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~~--~~i~~v~Q~~~l~~-----~-tv~eni~~ 537 (659)
T TIGR00954 466 VLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPAK--GKLFYVPQRPYMTL-----G-TLRDQIIY 537 (659)
T ss_pred eeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecCC--CcEEEECCCCCCCC-----c-CHHHHHhc
Confidence 5899999999999999999999999999999999999999999998763 47999999854332 2 45555433
Q ss_pred cc-------cCchHHHHHHHhhhhHH---HHhhc-------CCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCC
Q psy10767 84 YN-------CSTLEDVFLYLCEQDQI---LFSLV-------GSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVL 146 (149)
Q Consensus 84 ~~-------~~~~~~~~~~~~~~~~~---~~~~~-------~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~ 146 (149)
.. ....++....+++..++ ..+.. ....+|||||||++||||++++|+++||||||++||+..
T Consensus 538 ~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~ 617 (659)
T TIGR00954 538 PDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDV 617 (659)
T ss_pred CCChhhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHH
Confidence 11 11112223333333322 11111 113579999999999999999999999999999999875
Q ss_pred C
Q psy10767 147 S 147 (149)
Q Consensus 147 ~ 147 (149)
+
T Consensus 618 ~ 618 (659)
T TIGR00954 618 E 618 (659)
T ss_pred H
Confidence 4
No 314
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.7e-33 Score=238.80 Aligned_cols=142 Identities=24% Similarity=0.235 Sum_probs=95.8
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeecceeeeeecCcccccCcccccCC--hhHH-
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAEDS--PSYL- 80 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~~~i~~~~q~~~~~~~~~~~~~~--~~~~- 80 (149)
++++|+||+|.+|+++||+||||||||||||+|+|+++|++|+|.+++.. .++|++|...........+.. ....
T Consensus 15 ~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~--~i~~~~q~~~~~~~~~~~~v~~~~~~~~ 92 (638)
T PRK10636 15 VLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNW--QLAWVNQETPALPQPALEYVIDGDREYR 92 (638)
T ss_pred eeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCC--EEEEEecCCCCCCCCHHHHHHHhhHHHH
Confidence 57999999999999999999999999999999999999999999998853 588998853211000000000 0000
Q ss_pred ------------------Hhhcc------cCchHHHHHHHhhhhHHH--HhhcCCCCCChhHHHHHHHHHHHhcCCCEEE
Q psy10767 81 ------------------LEYYN------CSTLEDVFLYLCEQDQIL--FSLVGSESAFGGQQRRVSFAVSLIHDPKILI 134 (149)
Q Consensus 81 ------------------~~~~~------~~~~~~~~~~~~~~~~~~--~~~~~~~~~sgGqkqrv~iaral~~~p~ill 134 (149)
..... .......+..+++.+++. ........+||||||||+|||||+.+|++||
T Consensus 93 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGerqRv~LA~aL~~~P~lLL 172 (638)
T PRK10636 93 QLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNLAQALICRSDLLL 172 (638)
T ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHHHHHHHHHHHccCCCEEE
Confidence 00000 000111222233333221 1111223469999999999999999999999
Q ss_pred EcCCCCCCCcCCC
Q psy10767 135 LDEPTVGLDPVLS 147 (149)
Q Consensus 135 lDEPt~gLD~~~~ 147 (149)
||||||+||+..+
T Consensus 173 LDEPtn~LD~~~~ 185 (638)
T PRK10636 173 LDEPTNHLDLDAV 185 (638)
T ss_pred EcCCCCcCCHHHH
Confidence 9999999998754
No 315
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=6.9e-33 Score=255.24 Aligned_cols=136 Identities=25% Similarity=0.374 Sum_probs=104.9
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec---------ceeeeeecCcccccCccccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV---------RDIGYMPQVGLMRSGALLAE 74 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~---------~~i~~~~q~~~~~~~~~~~~ 74 (149)
++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++ +.|+++||++.++.+
T Consensus 1250 ~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~g----- 1324 (1495)
T PLN03232 1250 PVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSG----- 1324 (1495)
T ss_pred cccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCc-----
Confidence 589999999999999999999999999999999999999999999999987 358999999655433
Q ss_pred CChhHHHhhcccCchHHHHHHHhhhhHH----------HHhhcCC--CCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCC
Q psy10767 75 DSPSYLLEYYNCSTLEDVFLYLCEQDQI----------LFSLVGS--ESAFGGQQRRVSFAVSLIHDPKILILDEPTVGL 142 (149)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~--~~~sgGqkqrv~iaral~~~p~illlDEPt~gL 142 (149)
++.+|...... ..++...++++..+. .+..++. ..+|||||||++|||||+++|+|||||||||+|
T Consensus 1325 -TIr~NL~~~~~-~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaL 1402 (1495)
T PLN03232 1325 -TVRFNIDPFSE-HNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASV 1402 (1495)
T ss_pred -cHHHHcCCCCC-CCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccC
Confidence 45555544321 122222222222211 1112222 257999999999999999999999999999999
Q ss_pred CcCC
Q psy10767 143 DPVL 146 (149)
Q Consensus 143 D~~~ 146 (149)
|+..
T Consensus 1403 D~~T 1406 (1495)
T PLN03232 1403 DVRT 1406 (1495)
T ss_pred CHHH
Confidence 9864
No 316
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.4e-32 Score=205.58 Aligned_cols=137 Identities=23% Similarity=0.298 Sum_probs=99.4
Q ss_pred ceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec---------ceeeeeecCcccccCcccccC
Q psy10767 5 SASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV---------RDIGYMPQVGLMRSGALLAED 75 (149)
Q Consensus 5 ~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~---------~~i~~~~q~~~~~~~~~~~~~ 75 (149)
.++++||++.+||+.+|+||||||||||||.|+|...|++|++.++|.+. +.-+.+||+..+.++ .
T Consensus 16 ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFp-----F 90 (259)
T COG4559 16 LLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFP-----F 90 (259)
T ss_pred eccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhhcccCcccccc-----e
Confidence 68999999999999999999999999999999999999999999999876 346788997533222 2
Q ss_pred ChhHHHhhcc------cC--chHHHHHHHhhhhHHH-HhhcCCCCCChhHHHHHHHHHHHhc------CCCEEEEcCCCC
Q psy10767 76 SPSYLLEYYN------CS--TLEDVFLYLCEQDQIL-FSLVGSESAFGGQQRRVSFAVSLIH------DPKILILDEPTV 140 (149)
Q Consensus 76 ~~~~~~~~~~------~~--~~~~~~~~~~~~~~~~-~~~~~~~~~sgGqkqrv~iaral~~------~p~illlDEPt~ 140 (149)
++.+...+-. .. ...+.....+...+.. ........|||||||||.+||+|++ ++++|+||||||
T Consensus 91 tv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPts 170 (259)
T COG4559 91 TVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTS 170 (259)
T ss_pred EHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCcc
Confidence 3344443321 11 1122234444444431 1112223459999999999999975 446999999999
Q ss_pred CCCcCC
Q psy10767 141 GLDPVL 146 (149)
Q Consensus 141 gLD~~~ 146 (149)
+||+..
T Consensus 171 aLDi~H 176 (259)
T COG4559 171 ALDIAH 176 (259)
T ss_pred ccchHH
Confidence 999864
No 317
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-32 Score=229.78 Aligned_cols=133 Identities=20% Similarity=0.303 Sum_probs=95.8
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeecceeeeeecCcccccCcccccCChhHHHhh
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAEDSPSYLLEY 83 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~ 83 (149)
++|+++||++.+|+++||+||||||||||+++|+|+++|++|+|.++|.+. .++ +. ..+....++.++..+
T Consensus 38 ~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~-~i~---~~-----~~l~~~lTV~EnL~l 108 (549)
T PRK13545 38 YALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAA-LIA---IS-----SGLNGQLTGIENIEL 108 (549)
T ss_pred eEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEee-eEE---ec-----cccCCCCcHHHHHHh
Confidence 479999999999999999999999999999999999999999999999652 122 21 111223445555432
Q ss_pred c----ccCc--hHHHHHHHhhhhHH---HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCCC
Q psy10767 84 Y----NCST--LEDVFLYLCEQDQI---LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 84 ~----~~~~--~~~~~~~~~~~~~~---~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~~ 147 (149)
. .... ..+....+++..++ ..... ..+|||||||++|||||+.+|++|||||||+|||+..+
T Consensus 109 ~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~--~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr 179 (549)
T PRK13545 109 KGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPV--KTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFT 179 (549)
T ss_pred hhhhcCCCHHHHHHHHHHHHHHcCChhHhhCCc--ccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHH
Confidence 1 1111 11122233333332 22333 34599999999999999999999999999999999754
No 318
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.6e-32 Score=198.16 Aligned_cols=95 Identities=38% Similarity=0.692 Sum_probs=84.2
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeecce---------eeeeecCcccccCccccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRD---------IGYMPQVGLMRSGALLAE 74 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~~~---------i~~~~q~~~~~~~~~~~~ 74 (149)
.+++++||++.+|++++|+|+||||||||+++|+|+++|++|+|+++|.++.. ++|++|
T Consensus 13 ~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~q------------ 80 (157)
T cd00267 13 TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQ------------ 80 (157)
T ss_pred eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEee------------
Confidence 47899999999999999999999999999999999999999999999975321 222222
Q ss_pred CChhHHHhhcccCchHHHHHHHhhhhHHHHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCCC
Q psy10767 75 DSPSYLLEYYNCSTLEDVFLYLCEQDQILFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~~ 147 (149)
+|+||+||++|||+++.+|++++|||||++||+..+
T Consensus 81 -------------------------------------lS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~ 116 (157)
T cd00267 81 -------------------------------------LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASR 116 (157)
T ss_pred -------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHH
Confidence 499999999999999999999999999999998754
No 319
>PLN03130 ABC transporter C family member; Provisional
Probab=99.98 E-value=1.2e-32 Score=254.52 Aligned_cols=136 Identities=26% Similarity=0.392 Sum_probs=105.1
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec---------ceeeeeecCcccccCccccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV---------RDIGYMPQVGLMRSGALLAE 74 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~---------~~i~~~~q~~~~~~~~~~~~ 74 (149)
++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++ ++|+++||++.++.+
T Consensus 1253 ~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~G----- 1327 (1622)
T PLN03130 1253 PVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSG----- 1327 (1622)
T ss_pred ceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccc-----
Confidence 589999999999999999999999999999999999999999999999987 358999999655443
Q ss_pred CChhHHHhhcccCchHHHHHHHhhhhHH----------HHhhcCC--CCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCC
Q psy10767 75 DSPSYLLEYYNCSTLEDVFLYLCEQDQI----------LFSLVGS--ESAFGGQQRRVSFAVSLIHDPKILILDEPTVGL 142 (149)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~--~~~sgGqkqrv~iaral~~~p~illlDEPt~gL 142 (149)
++.+|....... .++...++++..+. .+..++. ..+|||||||++|||||+++|+|||||||||+|
T Consensus 1328 -TIreNLd~~~~~-tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaL 1405 (1622)
T PLN03130 1328 -TVRFNLDPFNEH-NDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAV 1405 (1622)
T ss_pred -cHHHHhCcCCCC-CHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCC
Confidence 455555443211 22222233222211 1122222 257999999999999999999999999999999
Q ss_pred CcCC
Q psy10767 143 DPVL 146 (149)
Q Consensus 143 D~~~ 146 (149)
|+..
T Consensus 1406 D~~T 1409 (1622)
T PLN03130 1406 DVRT 1409 (1622)
T ss_pred CHHH
Confidence 9864
No 320
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.98 E-value=1.6e-32 Score=251.94 Aligned_cols=138 Identities=30% Similarity=0.438 Sum_probs=101.1
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEEC-Ceec---------ceeeeeecCcccccCcccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLS-ARTV---------RDIGYMPQVGLMRSGALLA 73 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~-g~~~---------~~i~~~~q~~~~~~~~~~~ 73 (149)
++++|+||++++||++||+||||||||||+++|+|+++|++|+|.++ |.++ +.|+||+|++.++.
T Consensus 399 ~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~----- 473 (1466)
T PTZ00265 399 EIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFS----- 473 (1466)
T ss_pred ceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHHHhccEecccccchh-----
Confidence 58999999999999999999999999999999999999999999994 5554 35999999865432
Q ss_pred cCChhHHHhhccc---------------------------------------------------------CchHHHHHHH
Q psy10767 74 EDSPSYLLEYYNC---------------------------------------------------------STLEDVFLYL 96 (149)
Q Consensus 74 ~~~~~~~~~~~~~---------------------------------------------------------~~~~~~~~~~ 96 (149)
.++.++..+... ...++.+..+
T Consensus 474 -~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a 552 (1466)
T PTZ00265 474 -NSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDV 552 (1466)
T ss_pred -ccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhcccccccCCHHHHHHH
Confidence 244444433100 0011222222
Q ss_pred hhhhHH---HHhh-------c--CCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCCC
Q psy10767 97 CEQDQI---LFSL-------V--GSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 97 ~~~~~~---~~~~-------~--~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~~ 147 (149)
++..+. .... + ....+|||||||++|||||+++|+||||||||++||+..+
T Consensus 553 ~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se 615 (1466)
T PTZ00265 553 SKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSE 615 (1466)
T ss_pred HHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHH
Confidence 222221 1111 1 1235799999999999999999999999999999998754
No 321
>PLN03073 ABC transporter F family; Provisional
Probab=99.98 E-value=3.3e-32 Score=236.20 Aligned_cols=138 Identities=27% Similarity=0.344 Sum_probs=98.9
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeecceeeeeecCcccccCcccccCChh-HHHh
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAEDSPS-YLLE 82 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~~~i~~~~q~~~~~~~~~~~~~~~~-~~~~ 82 (149)
++++|+||+|.+|++++|+||||||||||+|+|+|+.+|++|+|++++. ..++|++|+... .+....+.. ....
T Consensus 523 ~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~--~~igyv~Q~~~~---~l~~~~~~~~~~~~ 597 (718)
T PLN03073 523 LLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAK--VRMAVFSQHHVD---GLDLSSNPLLYMMR 597 (718)
T ss_pred eeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCc--eeEEEEeccccc---cCCcchhHHHHHHH
Confidence 4799999999999999999999999999999999999999999999764 369999997411 111111111 1111
Q ss_pred hcccCchHHHHHHHhhhhHHH--HhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCCC
Q psy10767 83 YYNCSTLEDVFLYLCEQDQIL--FSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~~ 147 (149)
.+. ......+..++..+++. ........||||||||++|||+++.+|++|||||||++||+..+
T Consensus 598 ~~~-~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~ 663 (718)
T PLN03073 598 CFP-GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAV 663 (718)
T ss_pred hcC-CCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHH
Confidence 111 11123333444443331 11223345699999999999999999999999999999998754
No 322
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.98 E-value=1.1e-32 Score=213.93 Aligned_cols=136 Identities=23% Similarity=0.305 Sum_probs=94.3
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEE-----------ECCeecc-----------eeeeee
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSIS-----------LSARTVR-----------DIGYMP 61 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~-----------~~g~~~~-----------~i~~~~ 61 (149)
.+++|+|+ +.+||+++|+||||||||||+++|+|+++|++|+|. ++|.++. .+++++
T Consensus 15 ~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~ 93 (255)
T cd03236 15 FKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDVKVIVKP 93 (255)
T ss_pred hhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHHhhhcccceeeec
Confidence 47899994 999999999999999999999999999999999996 6676541 256667
Q ss_pred cCcccccCcccccCChhHHHhhcccCchHHHHHHHhhhhHH---HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCC
Q psy10767 62 QVGLMRSGALLAEDSPSYLLEYYNCSTLEDVFLYLCEQDQI---LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEP 138 (149)
Q Consensus 62 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEP 138 (149)
|...... ..+ ..++.++. ...........+++..++ ..... ..+|+|||||++||||++.+|+++|||||
T Consensus 94 ~~~~~~~-~~~-~~~i~~~l---~~~~~~~~~~~~l~~~gl~~~~~~~~--~~LS~G~~qrv~laral~~~p~illlDEP 166 (255)
T cd03236 94 QYVDLIP-KAV-KGKVGELL---KKKDERGKLDELVDQLELRHVLDRNI--DQLSGGELQRVAIAAALARDADFYFFDEP 166 (255)
T ss_pred chhccCc-hHH-HHHHHHHh---chhHHHHHHHHHHHHcCCchhhcCCh--hhCCHHHHHHHHHHHHHHhCCCEEEEECC
Confidence 6532211 111 11111111 111112223333333332 22222 34599999999999999999999999999
Q ss_pred CCCCCcCCC
Q psy10767 139 TVGLDPVLS 147 (149)
Q Consensus 139 t~gLD~~~~ 147 (149)
|++||+..+
T Consensus 167 ts~LD~~~~ 175 (255)
T cd03236 167 SSYLDIKQR 175 (255)
T ss_pred CCCCCHHHH
Confidence 999999754
No 323
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.98 E-value=2.5e-32 Score=251.87 Aligned_cols=136 Identities=25% Similarity=0.337 Sum_probs=105.2
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec---------ceeeeeecCcccccCccccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV---------RDIGYMPQVGLMRSGALLAE 74 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~---------~~i~~~~q~~~~~~~~~~~~ 74 (149)
++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++ ++|+++||++.++.+
T Consensus 1300 ~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~g----- 1374 (1522)
T TIGR00957 1300 LVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSG----- 1374 (1522)
T ss_pred ccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCc-----
Confidence 589999999999999999999999999999999999999999999999987 358999999665543
Q ss_pred CChhHHHhhcccCchHHHHHHHhhhhHH----------HHhhcCC--CCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCC
Q psy10767 75 DSPSYLLEYYNCSTLEDVFLYLCEQDQI----------LFSLVGS--ESAFGGQQRRVSFAVSLIHDPKILILDEPTVGL 142 (149)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~--~~~sgGqkqrv~iaral~~~p~illlDEPt~gL 142 (149)
++.+|...+... .++....+++..+. ++..++. ..+|||||||++|||||+++|+||||||||++|
T Consensus 1375 -TIr~NLdp~~~~-sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSal 1452 (1522)
T TIGR00957 1375 -SLRMNLDPFSQY-SDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAV 1452 (1522)
T ss_pred -cHHHHcCcccCC-CHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccC
Confidence 455555432211 12222223222221 1222322 357999999999999999999999999999999
Q ss_pred CcCC
Q psy10767 143 DPVL 146 (149)
Q Consensus 143 D~~~ 146 (149)
|+..
T Consensus 1453 D~~T 1456 (1522)
T TIGR00957 1453 DLET 1456 (1522)
T ss_pred CHHH
Confidence 9864
No 324
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.98 E-value=8.6e-33 Score=204.92 Aligned_cols=136 Identities=23% Similarity=0.300 Sum_probs=105.9
Q ss_pred ccceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec---------ceeeeeecCcccccCcccc
Q psy10767 3 DVSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV---------RDIGYMPQVGLMRSGALLA 73 (149)
Q Consensus 3 ~~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~---------~~i~~~~q~~~~~~~~~~~ 73 (149)
.++++++|+.|++|.+++|||||||||||||.+++++.+.++|+|+++|.++ ++++..-|+ +.+..
T Consensus 14 ~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSILkQ~-----N~i~~ 88 (252)
T COG4604 14 KVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSILKQE-----NHINS 88 (252)
T ss_pred EEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHHHHhh-----chhhh
Confidence 3689999999999999999999999999999999999999999999999886 346666675 44555
Q ss_pred cCChhHHHhhccc-------C-chHHHHHHHhhhhH---HHHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCC
Q psy10767 74 EDSPSYLLEYYNC-------S-TLEDVFLYLCEQDQ---ILFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGL 142 (149)
Q Consensus 74 ~~~~~~~~~~~~~-------~-~~~~~~~~~~~~~~---~~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gL 142 (149)
+.++.+...|-+. . ..+..+..+.+.++ +..+....+ |||||||+.||+.++++.++++||||.|+|
T Consensus 89 rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~L--SGGQrQRAfIAMVlaQdTdyvlLDEPLNNL 166 (252)
T COG4604 89 RLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDEL--SGGQRQRAFIAMVLAQDTDYVLLDEPLNNL 166 (252)
T ss_pred eeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhc--ccchhhhhhhheeeeccCcEEEecCccccc
Confidence 5666665544211 1 12333344444433 345555545 999999999999999999999999999999
Q ss_pred CcC
Q psy10767 143 DPV 145 (149)
Q Consensus 143 D~~ 145 (149)
|.+
T Consensus 167 Dmk 169 (252)
T COG4604 167 DMK 169 (252)
T ss_pred chH
Confidence 975
No 325
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.98 E-value=4.3e-32 Score=233.30 Aligned_cols=141 Identities=23% Similarity=0.199 Sum_probs=94.0
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeecceeeeeecCcccccC-cccccC-------
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSG-ALLAED------- 75 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~~~i~~~~q~~~~~~~-~~~~~~------- 75 (149)
.+++|+||++++|+++||+||||||||||+|+|+|+++|++|+|.+++. ..+++++|.+..... ..+.+.
T Consensus 17 ~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~--~~~~~l~q~~~~~~~~~v~~~~~~~~~~~ 94 (635)
T PRK11147 17 PLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQD--LIVARLQQDPPRNVEGTVYDFVAEGIEEQ 94 (635)
T ss_pred eeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCC--CEEEEeccCCCCCCCCCHHHHHHHhhHHH
Confidence 5799999999999999999999999999999999999999999999873 246777775321110 000000
Q ss_pred ----Chh-------------HHHhhc----------ccCchHHHHHHHhhhhHHHHhhcCCCCCChhHHHHHHHHHHHhc
Q psy10767 76 ----SPS-------------YLLEYY----------NCSTLEDVFLYLCEQDQILFSLVGSESAFGGQQRRVSFAVSLIH 128 (149)
Q Consensus 76 ----~~~-------------~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgGqkqrv~iaral~~ 128 (149)
... .+...+ ........+..+++.+++. .......|||||||||+|||||+.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~-~~~~~~~LSgGekqRv~LAraL~~ 173 (635)
T PRK11147 95 AEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLD-PDAALSSLSGGWLRKAALGRALVS 173 (635)
T ss_pred HHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCC-CCCchhhcCHHHHHHHHHHHHHhc
Confidence 000 000000 0000011122222222221 111223569999999999999999
Q ss_pred CCCEEEEcCCCCCCCcCCC
Q psy10767 129 DPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 129 ~p~illlDEPt~gLD~~~~ 147 (149)
+|+||||||||++||+..+
T Consensus 174 ~P~lLLLDEPt~~LD~~~~ 192 (635)
T PRK11147 174 NPDVLLLDEPTNHLDIETI 192 (635)
T ss_pred CCCEEEEcCCCCccCHHHH
Confidence 9999999999999999764
No 326
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.97 E-value=2.4e-32 Score=218.51 Aligned_cols=120 Identities=38% Similarity=0.479 Sum_probs=89.3
Q ss_pred EECCCCCCHHHHHHHHhcCccCCcceEEECCeec-------ceeeeeecCcccccCcccccCChhHHHhhc----ccCc-
Q psy10767 21 LLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV-------RDIGYMPQVGLMRSGALLAEDSPSYLLEYY----NCST- 88 (149)
Q Consensus 21 iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~-------~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~----~~~~- 88 (149)
|+||||||||||+|+|+|+++|++|+|.++|+++ +.++|++|+. .+++..++.++..+. ....
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~-----~l~~~~tv~enl~~~~~~~~~~~~ 75 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSY-----ALFPHMTVEENVAFGLKMRKVPRA 75 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEecCc-----cccCCCcHHHHHHHHHhhcCCCHH
Confidence 6899999999999999999999999999999875 3599999984 334455666665432 1111
Q ss_pred -hHHHHHHHhhhhHH---HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCCC
Q psy10767 89 -LEDVFLYLCEQDQI---LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 89 -~~~~~~~~~~~~~~---~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~~ 147 (149)
.......+++..++ .++.. ..+|||||||++|||||+.+|+++||||||++||+..+
T Consensus 76 ~~~~~~~~~l~~~~l~~~~~~~~--~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~ 136 (325)
T TIGR01187 76 EIKPRVLEALRLVQLEEFADRKP--HQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLR 136 (325)
T ss_pred HHHHHHHHHHHHcCCcchhcCCh--hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHH
Confidence 12223333443333 22223 34599999999999999999999999999999999765
No 327
>PTZ00243 ABC transporter; Provisional
Probab=99.97 E-value=6.6e-32 Score=249.20 Aligned_cols=136 Identities=21% Similarity=0.307 Sum_probs=104.6
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec---------ceeeeeecCcccccCccccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV---------RDIGYMPQVGLMRSGALLAE 74 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~---------~~i~~~~q~~~~~~~~~~~~ 74 (149)
++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++ +.|+++||++.++.+
T Consensus 1324 ~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~g----- 1398 (1560)
T PTZ00243 1324 LVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDG----- 1398 (1560)
T ss_pred ceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccc-----
Confidence 489999999999999999999999999999999999999999999999987 358999999655443
Q ss_pred CChhHHHhhcccCchHHHHHHHhhhhHH----------HHhhcCC--CCCChhHHHHHHHHHHHhcC-CCEEEEcCCCCC
Q psy10767 75 DSPSYLLEYYNCSTLEDVFLYLCEQDQI----------LFSLVGS--ESAFGGQQRRVSFAVSLIHD-PKILILDEPTVG 141 (149)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~--~~~sgGqkqrv~iaral~~~-p~illlDEPt~g 141 (149)
++.+|...... ..++.+..+++..++ .+..++. ..+|||||||++|||||+++ |+|||||||||+
T Consensus 1399 -TIreNIdp~~~-~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSa 1476 (1560)
T PTZ00243 1399 -TVRQNVDPFLE-ASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATAN 1476 (1560)
T ss_pred -cHHHHhCcccC-CCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCcc
Confidence 45555543321 122223333332221 1122222 35799999999999999995 899999999999
Q ss_pred CCcCC
Q psy10767 142 LDPVL 146 (149)
Q Consensus 142 LD~~~ 146 (149)
||+..
T Consensus 1477 LD~~t 1481 (1560)
T PTZ00243 1477 IDPAL 1481 (1560)
T ss_pred CCHHH
Confidence 99864
No 328
>KOG0055|consensus
Probab=99.97 E-value=4.7e-32 Score=240.36 Aligned_cols=137 Identities=26% Similarity=0.384 Sum_probs=108.0
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeecc---------eeeeeecCcccccCccccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVR---------DIGYMPQVGLMRSGALLAE 74 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~~---------~i~~~~q~~~~~~~~~~~~ 74 (149)
++++|+|+++++|+.+||+|||||||||.+.+|.+.|+|++|.|.+||.+++ +++.|.|+|.++ .
T Consensus 1004 ~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF------~ 1077 (1228)
T KOG0055|consen 1004 PVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLF------N 1077 (1228)
T ss_pred hhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcceeccCchhh------c
Confidence 4899999999999999999999999999999999999999999999999873 599999996544 3
Q ss_pred CChhHHHhhcccCchHHHHHHHhhhhHH----------HHhhcCC--CCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCC
Q psy10767 75 DSPSYLLEYYNCSTLEDVFLYLCEQDQI----------LFSLVGS--ESAFGGQQRRVSFAVSLIHDPKILILDEPTVGL 142 (149)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~--~~~sgGqkqrv~iaral~~~p~illlDEPt~gL 142 (149)
.++.+|..+-.....++.+.++++..+. .+..++. ..||||||||+|||||+++||+||||||.||+|
T Consensus 1078 ~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkILLLDEATSAL 1157 (1228)
T KOG0055|consen 1078 GTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKILLLDEATSAL 1157 (1228)
T ss_pred ccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhh
Confidence 4566666554222233334344433332 2233332 246999999999999999999999999999999
Q ss_pred CcCC
Q psy10767 143 DPVL 146 (149)
Q Consensus 143 D~~~ 146 (149)
|..+
T Consensus 1158 DseS 1161 (1228)
T KOG0055|consen 1158 DSES 1161 (1228)
T ss_pred hhhh
Confidence 9875
No 329
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.97 E-value=2.9e-32 Score=233.69 Aligned_cols=139 Identities=25% Similarity=0.366 Sum_probs=106.8
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCC---cceEEECCeec------ceeeeeecCcccccCccccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLD---HGSISLSARTV------RDIGYMPQVGLMRSGALLAE 74 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~---~G~i~~~g~~~------~~i~~~~q~~~~~~~~~~~~ 74 (149)
.+|+|+|+++++||+++|+||||||||||+++|+|..++. +|+|.++|.+. +.++|++|++. +.+.
T Consensus 39 ~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~-----~~~~ 113 (617)
T TIGR00955 39 HLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDL-----FIPT 113 (617)
T ss_pred ccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccc-----cCcc
Confidence 5899999999999999999999999999999999998875 79999999875 35899999843 3445
Q ss_pred CChhHHHhhc---ccC---c---hHHHHHHHhhhhHH---HHhhcCC----CCCChhHHHHHHHHHHHhcCCCEEEEcCC
Q psy10767 75 DSPSYLLEYY---NCS---T---LEDVFLYLCEQDQI---LFSLVGS----ESAFGGQQRRVSFAVSLIHDPKILILDEP 138 (149)
Q Consensus 75 ~~~~~~~~~~---~~~---~---~~~~~~~~~~~~~~---~~~~~~~----~~~sgGqkqrv~iaral~~~p~illlDEP 138 (149)
.++.++..+. ... . .....+..++..++ .+..++. ..+|||||||++|||+|+.+|++++||||
T Consensus 114 lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEP 193 (617)
T TIGR00955 114 LTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEP 193 (617)
T ss_pred CcHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCC
Confidence 5666665442 111 1 12223444444333 2344443 24799999999999999999999999999
Q ss_pred CCCCCcCCC
Q psy10767 139 TVGLDPVLS 147 (149)
Q Consensus 139 t~gLD~~~~ 147 (149)
|+|||+..+
T Consensus 194 tsgLD~~~~ 202 (617)
T TIGR00955 194 TSGLDSFMA 202 (617)
T ss_pred CcchhHHHH
Confidence 999998754
No 330
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.97 E-value=1.2e-31 Score=231.07 Aligned_cols=137 Identities=23% Similarity=0.254 Sum_probs=103.5
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec-------------ceeeeeecCcccccCc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV-------------RDIGYMPQVGLMRSGA 70 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~-------------~~i~~~~q~~~~~~~~ 70 (149)
.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++ +.++|++|++.
T Consensus 22 ~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~----- 96 (648)
T PRK10535 22 EVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYH----- 96 (648)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHHHhccEEEEeCCcc-----
Confidence 479999999999999999999999999999999999999999999999774 24899999843
Q ss_pred ccccCChhHHHhhc----ccCc--hHHHHHHHhhhhHH---HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCC
Q psy10767 71 LLAEDSPSYLLEYY----NCST--LEDVFLYLCEQDQI---LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVG 141 (149)
Q Consensus 71 ~~~~~~~~~~~~~~----~~~~--~~~~~~~~~~~~~~---~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~g 141 (149)
+++..++.++..+. .... .+..+.+.++..++ .+... ..+|+||+||++|||||+++|+++||||||+|
T Consensus 97 l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~--~~LS~Gq~qrv~LAraL~~~P~lLllDEP~~g 174 (648)
T PRK10535 97 LLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQP--SQLSGGQQQRVSIARALMNGGQVILADEPTGA 174 (648)
T ss_pred cCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCc--ccCCHHHHHHHHHHHHHhcCCCEEEEECCCCC
Confidence 33334444444321 1111 12223333333333 22223 34599999999999999999999999999999
Q ss_pred CCcCCC
Q psy10767 142 LDPVLS 147 (149)
Q Consensus 142 LD~~~~ 147 (149)
||+..+
T Consensus 175 LD~~s~ 180 (648)
T PRK10535 175 LDSHSG 180 (648)
T ss_pred CCHHHH
Confidence 999765
No 331
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.97 E-value=4.4e-32 Score=196.36 Aligned_cols=139 Identities=26% Similarity=0.280 Sum_probs=102.6
Q ss_pred CccceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec---------------ceeeeeecCccc
Q psy10767 2 ADVSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV---------------RDIGYMPQVGLM 66 (149)
Q Consensus 2 ~~~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~---------------~~i~~~~q~~~~ 66 (149)
++.++.||+|+..+||.+.++||||||||||+|.+.=+.-|.+|+..+.+..+ +++|+|||.
T Consensus 14 ~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~lr~~vgmvfqq--- 90 (242)
T COG4161 14 AHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQ--- 90 (242)
T ss_pred cchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHHHHhhhhhhhh---
Confidence 45789999999999999999999999999999999999999999999976543 458999996
Q ss_pred ccCcccccCChhHHHhhc-----ccCch--HHHHHHHhhhhHH-HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCC
Q psy10767 67 RSGALLAEDSPSYLLEYY-----NCSTL--EDVFLYLCEQDQI-LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEP 138 (149)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~-----~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEP 138 (149)
..+-+..++.+++... +.... ...+.++++...+ .......+.+||||+|||+|||||+.+|++|++|||
T Consensus 91 --y~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralmmkpqvllfdep 168 (242)
T COG4161 91 --YNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEP 168 (242)
T ss_pred --hccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHhcCCcEEeecCc
Confidence 2333445555544221 11111 1222233333222 111223445699999999999999999999999999
Q ss_pred CCCCCcC
Q psy10767 139 TVGLDPV 145 (149)
Q Consensus 139 t~gLD~~ 145 (149)
|++|||.
T Consensus 169 taaldpe 175 (242)
T COG4161 169 TAALDPE 175 (242)
T ss_pred ccccCHH
Confidence 9999996
No 332
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.97 E-value=1.8e-31 Score=219.38 Aligned_cols=137 Identities=26% Similarity=0.439 Sum_probs=105.1
Q ss_pred ccceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec---------ceeeeeecCcccccCcccc
Q psy10767 3 DVSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV---------RDIGYMPQVGLMRSGALLA 73 (149)
Q Consensus 3 ~~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~---------~~i~~~~q~~~~~~~~~~~ 73 (149)
.++++++||++.+||.+|||||||||||||.|+|.|..+|.+|.|++||-++ +.|||+||+--++.+
T Consensus 349 ~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~G---- 424 (580)
T COG4618 349 KPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDG---- 424 (580)
T ss_pred CcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceecCC----
Confidence 3689999999999999999999999999999999999999999999999776 459999998543333
Q ss_pred cCChhHHHhhcccCchHHHHHHHhhh---hHHH-------HhhcCC--CCCChhHHHHHHHHHHHhcCCCEEEEcCCCCC
Q psy10767 74 EDSPSYLLEYYNCSTLEDVFLYLCEQ---DQIL-------FSLVGS--ESAFGGQQRRVSFAVSLIHDPKILILDEPTVG 141 (149)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-------~~~~~~--~~~sgGqkqrv~iaral~~~p~illlDEPt~g 141 (149)
++.+|...+..+...+.+.+..+. .++. +..++. ..||||||||+++||||.-+|.+++||||-++
T Consensus 425 --TIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsN 502 (580)
T COG4618 425 --TIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSN 502 (580)
T ss_pred --cHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCC
Confidence 456665554433332222222222 2221 122222 34799999999999999999999999999999
Q ss_pred CCcC
Q psy10767 142 LDPV 145 (149)
Q Consensus 142 LD~~ 145 (149)
||..
T Consensus 503 LD~~ 506 (580)
T COG4618 503 LDSE 506 (580)
T ss_pred cchh
Confidence 9975
No 333
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.97 E-value=3.6e-32 Score=206.86 Aligned_cols=139 Identities=28% Similarity=0.364 Sum_probs=98.1
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec----------ceeeeeecCcccccCcccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV----------RDIGYMPQVGLMRSGALLA 73 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~----------~~i~~~~q~~~~~~~~~~~ 73 (149)
.+|+|+||+|++||..+|+||||||||||+++++|.++|++|.+.+.|+.+ ++||+|...-.. .+..
T Consensus 45 ~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~IG~vS~~L~~---~~~~ 121 (257)
T COG1119 45 KILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIGLVSSELHE---RFRV 121 (257)
T ss_pred eeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHHhCccCHHHHh---hccc
Confidence 379999999999999999999999999999999999999999999988765 346666542110 0111
Q ss_pred cCChhHHH--------hhcccCc---hHHHHHHHhhhhHH---HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCC
Q psy10767 74 EDSPSYLL--------EYYNCST---LEDVFLYLCEQDQI---LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPT 139 (149)
Q Consensus 74 ~~~~~~~~--------~~~~~~~---~~~~~~~~~~~~~~---~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt 139 (149)
+.++.+.. -.|.... ...++..+++.++. ..++.. ++|-||||||.|||||+.+|++|||||||
T Consensus 122 ~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~--~LS~Ge~rrvLiaRALv~~P~LLiLDEP~ 199 (257)
T COG1119 122 RETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFG--SLSQGEQRRVLIARALVKDPELLILDEPA 199 (257)
T ss_pred ccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchh--hcCHhHHHHHHHHHHHhcCCCEEEecCcc
Confidence 11111110 0111111 12333444444443 233334 45999999999999999999999999999
Q ss_pred CCCCcCCC
Q psy10767 140 VGLDPVLS 147 (149)
Q Consensus 140 ~gLD~~~~ 147 (149)
+|||...|
T Consensus 200 ~GLDl~~r 207 (257)
T COG1119 200 QGLDLIAR 207 (257)
T ss_pred ccCChHHH
Confidence 99998766
No 334
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.97 E-value=1.7e-31 Score=224.53 Aligned_cols=138 Identities=26% Similarity=0.292 Sum_probs=96.7
Q ss_pred ccceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeecceeeeeecCcccccCcccccCChhHHHh
Q psy10767 3 DVSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAEDSPSYLLE 82 (149)
Q Consensus 3 ~~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~ 82 (149)
.+.++++|+++.+|+.+||||+||||||||||+|+|...|++|+|...+. .+++|++|++..... .++.+...
T Consensus 16 ~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~--~~v~~l~Q~~~~~~~-----~tv~~~v~ 88 (530)
T COG0488 16 RPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKG--LRVGYLSQEPPLDPE-----KTVLDYVI 88 (530)
T ss_pred ceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCC--ceEEEeCCCCCcCCC-----ccHHHHHH
Confidence 35789999999999999999999999999999999999999999999764 369999998644322 22221111
Q ss_pred h---------------cc-c-C-------------------chHHHHHHHhhhhHHHHhhcCCCCCChhHHHHHHHHHHH
Q psy10767 83 Y---------------YN-C-S-------------------TLEDVFLYLCEQDQILFSLVGSESAFGGQQRRVSFAVSL 126 (149)
Q Consensus 83 ~---------------~~-~-~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~sgGqkqrv~iaral 126 (149)
. +. . . ..+..+..++..++.........++|||||.||+||+||
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~~~~~~~LSGG~r~Rv~LA~aL 168 (530)
T COG0488 89 EGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARAL 168 (530)
T ss_pred hhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcccCchhhcCHHHHHHHHHHHHH
Confidence 0 00 0 0 000011111111111111122235699999999999999
Q ss_pred hcCCCEEEEcCCCCCCCcCCC
Q psy10767 127 IHDPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 127 ~~~p~illlDEPt~gLD~~~~ 147 (149)
+.+|++||||||||+||..+.
T Consensus 169 ~~~pDlLLLDEPTNHLD~~~i 189 (530)
T COG0488 169 LEEPDLLLLDEPTNHLDLESI 189 (530)
T ss_pred hcCCCEEEEcCCCcccCHHHH
Confidence 999999999999999998653
No 335
>KOG0056|consensus
Probab=99.97 E-value=7.2e-32 Score=221.56 Aligned_cols=137 Identities=28% Similarity=0.460 Sum_probs=105.6
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeecc---------eeeeeecCcccccCccccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVR---------DIGYMPQVGLMRSGALLAE 74 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~~---------~i~~~~q~~~~~~~~~~~~ 74 (149)
++++||||++.+|+.+||+||||+||||++|++-++++.++|.|.+||++++ .||.|||+..+++
T Consensus 552 ~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFN------ 625 (790)
T KOG0056|consen 552 PVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFN------ 625 (790)
T ss_pred ceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcCcccCcceeec------
Confidence 6899999999999999999999999999999999999999999999999983 4999999865544
Q ss_pred CChhHHHhhcccCchHHHHHHHhhhhHH----------HHhhcCC--CCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCC
Q psy10767 75 DSPSYLLEYYNCSTLEDVFLYLCEQDQI----------LFSLVGS--ESAFGGQQRRVSFAVSLIHDPKILILDEPTVGL 142 (149)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~--~~~sgGqkqrv~iaral~~~p~illlDEPt~gL 142 (149)
+++.++.++.......+...++.+..++ ....+++ +.+||||||||||||+++.+|.+++|||.||+|
T Consensus 626 dTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSAL 705 (790)
T KOG0056|consen 626 DTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSAL 705 (790)
T ss_pred ceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhc
Confidence 4444555543322222222222222221 2233333 457999999999999999999999999999999
Q ss_pred CcCC
Q psy10767 143 DPVL 146 (149)
Q Consensus 143 D~~~ 146 (149)
|-..
T Consensus 706 DT~t 709 (790)
T KOG0056|consen 706 DTNT 709 (790)
T ss_pred CCcc
Confidence 9754
No 336
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.97 E-value=5.2e-32 Score=208.76 Aligned_cols=142 Identities=30% Similarity=0.339 Sum_probs=97.6
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec--------ceeeeeecCcccccCcccccC
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV--------RDIGYMPQVGLMRSGALLAED 75 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~--------~~i~~~~q~~~~~~~~~~~~~ 75 (149)
.++.|+||+|++|++++++|||||||||++|+|+|++.|++|.|.++|.+. +++++|+-...-..+-+...+
T Consensus 38 ~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~d 117 (325)
T COG4586 38 EAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALD 117 (325)
T ss_pred hhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeechhhh
Confidence 378999999999999999999999999999999999999999999999754 234444432100000111111
Q ss_pred ChhHHHhhcccCch--HHHHHHHhhhhH---HHHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCCC
Q psy10767 76 SPSYLLEYYNCSTL--EDVFLYLCEQDQ---ILFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 76 ~~~~~~~~~~~~~~--~~~~~~~~~~~~---~~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~~ 147 (149)
+..-+...|..... .+....+.+..+ .+..+.+.+ |-|||.|+.||.||+++|++|+|||||-|||..++
T Consensus 118 s~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~L--SlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq 192 (325)
T COG4586 118 SLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKL--SLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQ 192 (325)
T ss_pred hHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhc--cchHHHHHHHHHHhcCCCcEEEecCCccCcchhHH
Confidence 12212222322211 222222222222 245555555 89999999999999999999999999999998754
No 337
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.97 E-value=1e-31 Score=198.30 Aligned_cols=107 Identities=24% Similarity=0.277 Sum_probs=81.2
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec----ceeeeeecCcccccCcccccCChhH
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV----RDIGYMPQVGLMRSGALLAEDSPSY 79 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~----~~i~~~~q~~~~~~~~~~~~~~~~~ 79 (149)
.+++|+||++++|++++|+||||||||||+|+|. +++|++.+++... ..++|++| .
T Consensus 9 ~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il----~~~G~v~~~~~~~~~~~~~~~~~~q---------------~- 68 (176)
T cd03238 9 HNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL----YASGKARLISFLPKFSRNKLIFIDQ---------------L- 68 (176)
T ss_pred eeecceEEEEcCCCEEEEECCCCCCHHHHHHHHh----hcCCcEEECCcccccccccEEEEhH---------------H-
Confidence 4789999999999999999999999999999995 3689999876521 12334333 0
Q ss_pred HHhhcccCchHHHHHHHhhhhHH----HHhhcCCCCCChhHHHHHHHHHHHhcC--CCEEEEcCCCCCCCcCCC
Q psy10767 80 LLEYYNCSTLEDVFLYLCEQDQI----LFSLVGSESAFGGQQRRVSFAVSLIHD--PKILILDEPTVGLDPVLS 147 (149)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~sgGqkqrv~iaral~~~--p~illlDEPt~gLD~~~~ 147 (149)
+.++.+++ ..... ..+|+|||||++||||++.+ |+++||||||++||+..+
T Consensus 69 ---------------~~l~~~~L~~~~~~~~~--~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~ 125 (176)
T cd03238 69 ---------------QFLIDVGLGYLTLGQKL--STLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDI 125 (176)
T ss_pred ---------------HHHHHcCCCccccCCCc--CcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHH
Confidence 01111111 12222 34599999999999999999 999999999999998754
No 338
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.8e-31 Score=220.56 Aligned_cols=138 Identities=28% Similarity=0.408 Sum_probs=106.0
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeecc---------eeeeeecCcccccCccccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVR---------DIGYMPQVGLMRSGALLAE 74 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~~---------~i~~~~q~~~~~~~~~~~~ 74 (149)
++++|+||+++.||.+||+|++|||||||++.|+|.++|++|+|.++|.++. .+++++|...++ .
T Consensus 352 ~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF------~ 425 (573)
T COG4987 352 KALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLF------S 425 (573)
T ss_pred chhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHH------H
Confidence 5899999999999999999999999999999999999999999999997762 478888874332 2
Q ss_pred CChhHHHhhcccCchHHHHHHHhhhhHH----------HHhhcCC--CCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCC
Q psy10767 75 DSPSYLLEYYNCSTLEDVFLYLCEQDQI----------LFSLVGS--ESAFGGQQRRVSFAVSLIHDPKILILDEPTVGL 142 (149)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~--~~~sgGqkqrv~iaral~~~p~illlDEPt~gL 142 (149)
.+..+|....+.+..++...++++.+++ .+...++ ..+|||||||++|||+++++.+++||||||.||
T Consensus 426 ~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegL 505 (573)
T COG4987 426 GTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGL 505 (573)
T ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccC
Confidence 3455555554333333444444444333 1122222 347999999999999999999999999999999
Q ss_pred CcCCC
Q psy10767 143 DPVLS 147 (149)
Q Consensus 143 D~~~~ 147 (149)
|+...
T Consensus 506 D~~TE 510 (573)
T COG4987 506 DPITE 510 (573)
T ss_pred ChhhH
Confidence 99753
No 339
>PRK13409 putative ATPase RIL; Provisional
Probab=99.97 E-value=7.8e-32 Score=229.89 Aligned_cols=136 Identities=23% Similarity=0.272 Sum_probs=97.2
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEE-----------ECCeecc-----------eeeeee
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSIS-----------LSARTVR-----------DIGYMP 61 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~-----------~~g~~~~-----------~i~~~~ 61 (149)
+.|++++ .+++|+++||+||||||||||+|+|+|+++|++|+|. ++|.++. ++++.+
T Consensus 88 ~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~ 166 (590)
T PRK13409 88 FKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKVVHKP 166 (590)
T ss_pred eeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHHhccCcceeecc
Confidence 6899999 8999999999999999999999999999999999997 8886541 245556
Q ss_pred cCcccccCcccccCChhHHHhhcccCchHHHHHHHhhhhHH---HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCC
Q psy10767 62 QVGLMRSGALLAEDSPSYLLEYYNCSTLEDVFLYLCEQDQI---LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEP 138 (149)
Q Consensus 62 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEP 138 (149)
|..... +.++ ..++.++.... .......++++.+++ .++.+. .||||||||++||+||+.+|++||||||
T Consensus 167 q~~~~~-p~~~-~~tv~e~l~~~---~~~~~~~~~l~~l~l~~~~~~~~~--~LSgGe~qrv~ia~al~~~p~lllLDEP 239 (590)
T PRK13409 167 QYVDLI-PKVF-KGKVRELLKKV---DERGKLDEVVERLGLENILDRDIS--ELSGGELQRVAIAAALLRDADFYFFDEP 239 (590)
T ss_pred cchhhh-hhhh-cchHHHHHHhh---hHHHHHHHHHHHcCCchhhcCChh--hCCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 542211 1111 11333333221 112223333333333 233333 4599999999999999999999999999
Q ss_pred CCCCCcCCC
Q psy10767 139 TVGLDPVLS 147 (149)
Q Consensus 139 t~gLD~~~~ 147 (149)
|++||+..+
T Consensus 240 ts~LD~~~~ 248 (590)
T PRK13409 240 TSYLDIRQR 248 (590)
T ss_pred CCCCCHHHH
Confidence 999999765
No 340
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.97 E-value=2.1e-31 Score=244.01 Aligned_cols=139 Identities=30% Similarity=0.432 Sum_probs=104.9
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCcc---CCcceEEECCeec-----ceeeeeecCcccccCcccccC
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLR---LDHGSISLSARTV-----RDIGYMPQVGLMRSGALLAED 75 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~---~~~G~i~~~g~~~-----~~i~~~~q~~~~~~~~~~~~~ 75 (149)
.+|+|+|+++++||++||+||||||||||+++|+|+.+ |++|+|.++|+++ +.++|++|++. +....
T Consensus 777 ~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~i~yv~Q~~~-----~~~~~ 851 (1394)
T TIGR00956 777 VILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSIGYVQQQDL-----HLPTS 851 (1394)
T ss_pred EeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhcceeeeccccc-----CCCCC
Confidence 47999999999999999999999999999999999997 6889999999875 35899999843 23445
Q ss_pred ChhHHHhhcc---c--C-ch---HHHHHHHhhhhHH---HHhhcCC--CCCChhHHHHHHHHHHHhcCCC-EEEEcCCCC
Q psy10767 76 SPSYLLEYYN---C--S-TL---EDVFLYLCEQDQI---LFSLVGS--ESAFGGQQRRVSFAVSLIHDPK-ILILDEPTV 140 (149)
Q Consensus 76 ~~~~~~~~~~---~--~-~~---~~~~~~~~~~~~~---~~~~~~~--~~~sgGqkqrv~iaral~~~p~-illlDEPt~ 140 (149)
++.++..+.. . . .. .+.+.++++..++ .+..++. ..+|||||||++|||+|+.+|+ ||+|||||+
T Consensus 852 Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTs 931 (1394)
T TIGR00956 852 TVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTS 931 (1394)
T ss_pred CHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHHHcCCCeEEEEcCCCC
Confidence 6666655421 0 1 11 1223344443333 2223321 1469999999999999999997 999999999
Q ss_pred CCCcCCC
Q psy10767 141 GLDPVLS 147 (149)
Q Consensus 141 gLD~~~~ 147 (149)
|||+..+
T Consensus 932 gLD~~~~ 938 (1394)
T TIGR00956 932 GLDSQTA 938 (1394)
T ss_pred CCCHHHH
Confidence 9998754
No 341
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.3e-31 Score=196.85 Aligned_cols=137 Identities=26% Similarity=0.302 Sum_probs=104.4
Q ss_pred ccceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeecceee--------eeecCcccccCccccc
Q psy10767 3 DVSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIG--------YMPQVGLMRSGALLAE 74 (149)
Q Consensus 3 ~~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~~~i~--------~~~q~~~~~~~~~~~~ 74 (149)
.+.+.++||++.+||++-|.||||||||||||+|+|+.+|++|+|++++..++... |+-.. +.+-.+
T Consensus 15 ~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~l~yLGH~-----~giK~e 89 (209)
T COG4133 15 RTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLYLGHQ-----PGIKTE 89 (209)
T ss_pred ceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhHHHHHHHhhcc-----ccccch
Confidence 35788999999999999999999999999999999999999999999987654322 12111 233456
Q ss_pred CChhHHHhhcccC---chHHHHHHHhhhhHH---HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCC
Q psy10767 75 DSPSYLLEYYNCS---TLEDVFLYLCEQDQI---LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVL 146 (149)
Q Consensus 75 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~---~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~ 146 (149)
.++.+|+.|+... .......+++..+++ .+.++..+ |-|||+||+|||-+++.+++-||||||++||...
T Consensus 90 LTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~~dlp~~~L--SAGQqRRvAlArL~ls~~pLWiLDEP~taLDk~g 165 (209)
T COG4133 90 LTALENLHFWQRFHGSGNAATIWEALAQVGLAGLEDLPVGQL--SAGQQRRVALARLWLSPAPLWILDEPFTALDKEG 165 (209)
T ss_pred hhHHHHHHHHHHHhCCCchhhHHHHHHHcCcccccccchhhc--chhHHHHHHHHHHHcCCCCceeecCcccccCHHH
Confidence 7788888776321 112233334444443 44455555 8999999999999999999999999999999864
No 342
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.97 E-value=4.1e-31 Score=212.90 Aligned_cols=138 Identities=24% Similarity=0.354 Sum_probs=107.0
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec------------ceeeeeecCcccccCcc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV------------RDIGYMPQVGLMRSGAL 71 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~------------~~i~~~~q~~~~~~~~~ 71 (149)
.+++++||++..|+.+||+|+||||||||-++|.++++++ |+|.|+|+++ +++-.|||+++ +.+
T Consensus 301 ~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPy---gSL 376 (534)
T COG4172 301 RAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPY---GSL 376 (534)
T ss_pred EEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCccccccChhhhhhhhhhceEEEeCCC---CCC
Confidence 3789999999999999999999999999999999999765 9999999887 35889999974 566
Q ss_pred cccCChhHHHh----hcc--cCc--hHHHHHHHhhhhHH----HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCC
Q psy10767 72 LAEDSPSYLLE----YYN--CST--LEDVFLYLCEQDQI----LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPT 139 (149)
Q Consensus 72 ~~~~~~~~~~~----~~~--~~~--~~~~~~~~~~~~~~----~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt 139 (149)
.+++++.+... ... ... ..+++..+++.+++ .+++.. ++|||||||++||||++.+|++++|||||
T Consensus 377 sPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPh--EFSGGQRQRIAIARAliLkP~~i~LDEPT 454 (534)
T COG4172 377 SPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPH--EFSGGQRQRIAIARALILKPELILLDEPT 454 (534)
T ss_pred CcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCc--ccCcchhhHHHHHHHHhcCCcEEEecCCc
Confidence 67776654432 221 111 13334444555444 334434 44999999999999999999999999999
Q ss_pred CCCCcCCC
Q psy10767 140 VGLDPVLS 147 (149)
Q Consensus 140 ~gLD~~~~ 147 (149)
|+||...+
T Consensus 455 SALD~SVQ 462 (534)
T COG4172 455 SALDRSVQ 462 (534)
T ss_pred hHhhHHHH
Confidence 99997643
No 343
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=1.8e-31 Score=194.17 Aligned_cols=139 Identities=27% Similarity=0.296 Sum_probs=99.4
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCee-c----------------ceeeeeecCccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSART-V----------------RDIGYMPQVGLM 66 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~-~----------------~~i~~~~q~~~~ 66 (149)
++++++||+++.||++++=||||+|||||||+|.+.|.|++|+|.+.... + +.||||.|.-
T Consensus 25 pV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQFL-- 102 (235)
T COG4778 25 PVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFL-- 102 (235)
T ss_pred eeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccChHHHHHHHHhhhHHHHHHH--
Confidence 57899999999999999999999999999999999999999999995321 1 3588888852
Q ss_pred ccCcccccCC----hhHHHhhcccCc--hHHHHHHHhhhhHH--HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCC
Q psy10767 67 RSGALLAEDS----PSYLLEYYNCST--LEDVFLYLCEQDQI--LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEP 138 (149)
Q Consensus 67 ~~~~~~~~~~----~~~~~~~~~~~~--~~~~~~~~~~~~~~--~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEP 138 (149)
...++-. +.+.....+... ....+..++...++ ..+......+||||||||.|||.++.+-+||+||||
T Consensus 103 ---RviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVNIaRgfivd~pILLLDEP 179 (235)
T COG4778 103 ---RVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEP 179 (235)
T ss_pred ---HhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheehhhhhhhhccCceEEecCC
Confidence 2222221 222221122211 12223333333333 122233445699999999999999999999999999
Q ss_pred CCCCCcCCC
Q psy10767 139 TVGLDPVLS 147 (149)
Q Consensus 139 t~gLD~~~~ 147 (149)
|++||...|
T Consensus 180 TasLDa~Nr 188 (235)
T COG4778 180 TASLDATNR 188 (235)
T ss_pred cccccccch
Confidence 999999876
No 344
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.97 E-value=7e-31 Score=193.31 Aligned_cols=141 Identities=20% Similarity=0.247 Sum_probs=102.4
Q ss_pred ceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec---------ceeeeeecCcccccCcccccC
Q psy10767 5 SASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV---------RDIGYMPQVGLMRSGALLAED 75 (149)
Q Consensus 5 ~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~---------~~i~~~~q~~~~~~~~~~~~~ 75 (149)
+++.|||++.+|+..||||.||||||||.|+|+|.++|++|+|.+||+.+ +.|.++||++. ..+.++.
T Consensus 28 AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpn---ts~NPRl 104 (267)
T COG4167 28 AVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPN---TSLNPRL 104 (267)
T ss_pred cccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHhhhhheeeeecCCc---cccChhh
Confidence 67899999999999999999999999999999999999999999999875 45999999852 2223333
Q ss_pred ChhHHHhhc-----ccCch--HHHHHHHhhhhHHH--HhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCC
Q psy10767 76 SPSYLLEYY-----NCSTL--EDVFLYLCEQDQIL--FSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVL 146 (149)
Q Consensus 76 ~~~~~~~~~-----~~~~~--~~~~~~~~~~~~~~--~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~ 146 (149)
.+...+... .+... .+.+...+..+++. +......-+|.|||||||+||||+.+|+|+|.||..++||...
T Consensus 105 ~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLARALIL~P~iIIaDeAl~~LD~sm 184 (267)
T COG4167 105 RIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLDMSM 184 (267)
T ss_pred hhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHHHHHHhcCCcEEEehhhhhhccHHH
Confidence 333222211 11111 12222233333331 2222222348999999999999999999999999999999876
Q ss_pred CC
Q psy10767 147 SF 148 (149)
Q Consensus 147 ~~ 148 (149)
|.
T Consensus 185 rs 186 (267)
T COG4167 185 RS 186 (267)
T ss_pred HH
Confidence 53
No 345
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.97 E-value=1.6e-30 Score=239.57 Aligned_cols=135 Identities=29% Similarity=0.417 Sum_probs=103.1
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec---------ceeeeeecCcccccCccccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV---------RDIGYMPQVGLMRSGALLAE 74 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~---------~~i~~~~q~~~~~~~~~~~~ 74 (149)
++|+|+||+|++||.+||+|+||||||||+++|.|+++ ++|+|.+||.++ +.++++||++.++.+
T Consensus 1233 ~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~G----- 1306 (1490)
T TIGR01271 1233 AVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSG----- 1306 (1490)
T ss_pred ceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCcc-----
Confidence 58999999999999999999999999999999999997 899999999987 358999999655543
Q ss_pred CChhHHHhhcccCchHHHHHHHhhhhHH----------HHhhcCC--CCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCC
Q psy10767 75 DSPSYLLEYYNCSTLEDVFLYLCEQDQI----------LFSLVGS--ESAFGGQQRRVSFAVSLIHDPKILILDEPTVGL 142 (149)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~--~~~sgGqkqrv~iaral~~~p~illlDEPt~gL 142 (149)
++.+|+...... .++....+++..++ ++..++. ..+|+|||||++|||||+++|+||||||||++|
T Consensus 1307 -TIR~NLdp~~~~-tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~l 1384 (1490)
T TIGR01271 1307 -TFRKNLDPYEQW-SDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHL 1384 (1490)
T ss_pred -CHHHHhCcccCC-CHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccC
Confidence 455555433211 12222233332221 1222222 247999999999999999999999999999999
Q ss_pred CcCC
Q psy10767 143 DPVL 146 (149)
Q Consensus 143 D~~~ 146 (149)
|+..
T Consensus 1385 D~~T 1388 (1490)
T TIGR01271 1385 DPVT 1388 (1490)
T ss_pred CHHH
Confidence 9864
No 346
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.97 E-value=1.8e-30 Score=239.17 Aligned_cols=135 Identities=23% Similarity=0.319 Sum_probs=100.0
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeecceeeeeecCcccccCcccccCChhHHHhh
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAEDSPSYLLEY 83 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~ 83 (149)
++++|+||++++|++++|+||||||||||+++|+|+++|++|+|.++| .++|++|++.+ +. .++.++..+
T Consensus 440 ~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g----~iayv~Q~~~l-----~~-~Ti~eNI~~ 509 (1490)
T TIGR01271 440 PVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG----RISFSPQTSWI-----MP-GTIKDNIIF 509 (1490)
T ss_pred cceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC----EEEEEeCCCcc-----CC-ccHHHHHHh
Confidence 479999999999999999999999999999999999999999999998 49999998533 32 356666654
Q ss_pred cccCch---HHHHHH--HhhhhHHH----HhhcC--CCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCCCC
Q psy10767 84 YNCSTL---EDVFLY--LCEQDQIL----FSLVG--SESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLSF 148 (149)
Q Consensus 84 ~~~~~~---~~~~~~--~~~~~~~~----~~~~~--~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~~~ 148 (149)
...... .+.... +.+..... ...++ ...||||||||++||||++.+|+++||||||++||+..+.
T Consensus 510 g~~~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~ 585 (1490)
T TIGR01271 510 GLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEK 585 (1490)
T ss_pred ccccchHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHH
Confidence 211111 111110 00111110 00111 2357999999999999999999999999999999987653
No 347
>PLN03140 ABC transporter G family member; Provisional
Probab=99.97 E-value=1.2e-30 Score=239.34 Aligned_cols=139 Identities=26% Similarity=0.299 Sum_probs=104.2
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccC--CcceEEECCeec------ceeeeeecCcccccCcccccC
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRL--DHGSISLSARTV------RDIGYMPQVGLMRSGALLAED 75 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~--~~G~i~~~g~~~------~~i~~~~q~~~~~~~~~~~~~ 75 (149)
.+|+|+|+.+++|++++|+|||||||||||++|+|..++ .+|+|.++|.+. +.++|++|++.+ .+..
T Consensus 894 ~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~-----~~~l 968 (1470)
T PLN03140 894 QLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIH-----SPQV 968 (1470)
T ss_pred eEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCChHHhhhheEEEcccccc-----CCCC
Confidence 479999999999999999999999999999999999763 689999999764 348999998533 3445
Q ss_pred ChhHHHhhc---cc--C-ch---HHHHHHHhhhhHH---HHhhcC---CCCCChhHHHHHHHHHHHhcCCCEEEEcCCCC
Q psy10767 76 SPSYLLEYY---NC--S-TL---EDVFLYLCEQDQI---LFSLVG---SESAFGGQQRRVSFAVSLIHDPKILILDEPTV 140 (149)
Q Consensus 76 ~~~~~~~~~---~~--~-~~---~~~~~~~~~~~~~---~~~~~~---~~~~sgGqkqrv~iaral~~~p~illlDEPt~ 140 (149)
++.+++.+. .. . .. .+.++++++..++ .+..++ ...+|||||||++||++|+.+|++|+|||||+
T Consensus 969 TV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTs 1048 (1470)
T PLN03140 969 TVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1048 (1470)
T ss_pred cHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Confidence 566555432 11 1 11 1223344444333 233332 13579999999999999999999999999999
Q ss_pred CCCcCCC
Q psy10767 141 GLDPVLS 147 (149)
Q Consensus 141 gLD~~~~ 147 (149)
|||+..+
T Consensus 1049 gLD~~~a 1055 (1470)
T PLN03140 1049 GLDARAA 1055 (1470)
T ss_pred CCCHHHH
Confidence 9998754
No 348
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.97 E-value=1.7e-30 Score=238.05 Aligned_cols=139 Identities=22% Similarity=0.249 Sum_probs=102.9
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCc----cCCcceEEECCeec--------ceeeeeecCcccccCcc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRL----RLDHGSISLSARTV--------RDIGYMPQVGLMRSGAL 71 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~----~~~~G~i~~~g~~~--------~~i~~~~q~~~~~~~~~ 71 (149)
.+|+|+|+.+++||+++|+||||||||||+|+|+|.. .|++|+|.++|.++ +.++|++|++. +
T Consensus 75 ~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~-----~ 149 (1394)
T TIGR00956 75 DILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDV-----H 149 (1394)
T ss_pred eeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccc-----c
Confidence 4799999999999999999999999999999999986 57899999999764 23899999853 3
Q ss_pred cccCChhHHHhhc---cc------C-chHH----HHHHHhhhhHH---HHhhcC---CCCCChhHHHHHHHHHHHhcCCC
Q psy10767 72 LAEDSPSYLLEYY---NC------S-TLED----VFLYLCEQDQI---LFSLVG---SESAFGGQQRRVSFAVSLIHDPK 131 (149)
Q Consensus 72 ~~~~~~~~~~~~~---~~------~-~~~~----~~~~~~~~~~~---~~~~~~---~~~~sgGqkqrv~iaral~~~p~ 131 (149)
.+..++.++..+. .. . ..++ ..+.+++..++ .+..++ ...+||||||||+||++|+.+|+
T Consensus 150 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~ 229 (1394)
T TIGR00956 150 FPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAK 229 (1394)
T ss_pred CCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCC
Confidence 3445555555432 10 0 1111 11223333333 122222 23569999999999999999999
Q ss_pred EEEEcCCCCCCCcCCC
Q psy10767 132 ILILDEPTVGLDPVLS 147 (149)
Q Consensus 132 illlDEPt~gLD~~~~ 147 (149)
+++|||||+|||+..+
T Consensus 230 vlllDEPTsgLD~~~~ 245 (1394)
T TIGR00956 230 IQCWDNATRGLDSATA 245 (1394)
T ss_pred EEEEeCCCCCcCHHHH
Confidence 9999999999998754
No 349
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.97 E-value=9.4e-31 Score=187.26 Aligned_cols=136 Identities=30% Similarity=0.401 Sum_probs=102.3
Q ss_pred ceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCC---cceEEECCeec-------ceeeeeecCcccccCccccc
Q psy10767 5 SASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLD---HGSISLSARTV-------RDIGYMPQVGLMRSGALLAE 74 (149)
Q Consensus 5 ~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~---~G~i~~~g~~~-------~~i~~~~q~~~~~~~~~~~~ 74 (149)
.+-++||+|.+|||+.|+||||||||||+..+.|.+.++ +|+++++++.+ +.+|+.||++.++ +.
T Consensus 17 LLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~GiLFQD~lLF-----ph 91 (213)
T COG4136 17 LLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGILFQDALLF-----PH 91 (213)
T ss_pred EEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhheeeeecccccc-----cc
Confidence 466899999999999999999999999999999998775 79999999876 5699999996544 34
Q ss_pred CChhHHHhhc---ccC--chHHHHHHHhhhhHH---HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCC
Q psy10767 75 DSPSYLLEYY---NCS--TLEDVFLYLCEQDQI---LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVL 146 (149)
Q Consensus 75 ~~~~~~~~~~---~~~--~~~~~~~~~~~~~~~---~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~ 146 (149)
.++.++..+. ..+ ...+.++..++...+ .++... .+|||||.||++-|+|+..|+.++||||+|.||...
T Consensus 92 lsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~--tlSGGQrARvaL~R~Lla~Pk~lLLDEPFS~LD~AL 169 (213)
T COG4136 92 LSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDPA--TLSGGQRARVALLRALLAQPKALLLDEPFSRLDVAL 169 (213)
T ss_pred cccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcChh--hcCcchHHHHHHHHHHHhCcceeeeCCchhHHHHHH
Confidence 4444443332 111 112233334444333 233333 349999999999999999999999999999999876
Q ss_pred C
Q psy10767 147 S 147 (149)
Q Consensus 147 ~ 147 (149)
|
T Consensus 170 R 170 (213)
T COG4136 170 R 170 (213)
T ss_pred H
Confidence 5
No 350
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=4.4e-30 Score=193.91 Aligned_cols=137 Identities=24% Similarity=0.279 Sum_probs=98.6
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcC--ccCCcceEEECCeecc----------eeeeeecCcccccCcc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNR--LRLDHGSISLSARTVR----------DIGYMPQVGLMRSGAL 71 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~--~~~~~G~i~~~g~~~~----------~i~~~~q~~~~~~~~~ 71 (149)
.+|+++|++|++||+++|+||||||||||.++|+|. |++++|+|.++|+++. .+..-||.|.-.
T Consensus 18 eILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~GifLafQ~P~ei---- 93 (251)
T COG0396 18 EILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARAGIFLAFQYPVEI---- 93 (251)
T ss_pred hhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhcCCEEeecCCccC----
Confidence 589999999999999999999999999999999998 5889999999999872 367778875322
Q ss_pred cccCChhHHHhhc-----ccC----chHHHHHHHhhhhHH----HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCC
Q psy10767 72 LAEDSPSYLLEYY-----NCS----TLEDVFLYLCEQDQI----LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEP 138 (149)
Q Consensus 72 ~~~~~~~~~~~~~-----~~~----~~~~~~~~~~~~~~~----~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEP 138 (149)
+--+..+++... ... .......+.++..++ +.+.+. ..+|||||+|..|+..++.+|++.|||||
T Consensus 94 -~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN-~GFSGGEkKR~EilQ~~~lePkl~ILDE~ 171 (251)
T COG0396 94 -PGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVN-EGFSGGEKKRNEILQLLLLEPKLAILDEP 171 (251)
T ss_pred -CCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccC-CCcCcchHHHHHHHHHHhcCCCEEEecCC
Confidence 222222222211 000 011222222222222 233333 34699999999999999999999999999
Q ss_pred CCCCCcCC
Q psy10767 139 TVGLDPVL 146 (149)
Q Consensus 139 t~gLD~~~ 146 (149)
-||||.++
T Consensus 172 DSGLDIda 179 (251)
T COG0396 172 DSGLDIDA 179 (251)
T ss_pred CcCccHHH
Confidence 99999864
No 351
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.97 E-value=4.5e-30 Score=237.01 Aligned_cols=134 Identities=22% Similarity=0.364 Sum_probs=100.2
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeecceeeeeecCcccccCcccccCChhHHHhh
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAEDSPSYLLEY 83 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~ 83 (149)
++++|+||++++|++++|+||||||||||+++|+|+++|++|+|.++| .|+|++|++.++ ..++.+|..+
T Consensus 652 ~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g----~i~yv~Q~~~l~------~~Ti~eNI~~ 721 (1522)
T TIGR00957 652 PTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG----SVAYVPQQAWIQ------NDSLRENILF 721 (1522)
T ss_pred ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC----EEEEEcCCcccc------CCcHHHHhhc
Confidence 589999999999999999999999999999999999999999999987 599999985332 3456666654
Q ss_pred cccCchH--HHHHHHhhhhHHHHh-------hc--CCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCCC
Q psy10767 84 YNCSTLE--DVFLYLCEQDQILFS-------LV--GSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 84 ~~~~~~~--~~~~~~~~~~~~~~~-------~~--~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~~ 147 (149)
......+ +...+.......... .+ ....+|||||||++||||++.+|+++||||||++||+...
T Consensus 722 g~~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~ 796 (1522)
T TIGR00957 722 GKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVG 796 (1522)
T ss_pred CCccCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHH
Confidence 3211111 111111111111111 11 1235799999999999999999999999999999998754
No 352
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.97 E-value=3.1e-30 Score=193.42 Aligned_cols=140 Identities=28% Similarity=0.308 Sum_probs=109.1
Q ss_pred ccceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeecc---------eeeeeecCcccccCcccc
Q psy10767 3 DVSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVR---------DIGYMPQVGLMRSGALLA 73 (149)
Q Consensus 3 ~~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~~---------~i~~~~q~~~~~~~~~~~ 73 (149)
.++++++|++|.+|+++.|+|.||||||||+++|+|-+.|++|+|.++|.++. .++-|||++.. ..++
T Consensus 19 k~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~---gt~~ 95 (263)
T COG1101 19 KRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLA---GTAP 95 (263)
T ss_pred HHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhh---CCcc
Confidence 35899999999999999999999999999999999999999999999999873 26789998643 3467
Q ss_pred cCChhHHHhhccc-------Cc--hHHHHHHHhhhh--------HHHHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEc
Q psy10767 74 EDSPSYLLEYYNC-------ST--LEDVFLYLCEQD--------QILFSLVGSESAFGGQQRRVSFAVSLIHDPKILILD 136 (149)
Q Consensus 74 ~~~~~~~~~~~~~-------~~--~~~~~~~~~~~~--------~~~~~~~~~~~~sgGqkqrv~iaral~~~p~illlD 136 (149)
..++.+|...... .. .......+.+.. +.+..+.+.+ ||||||-++++.|.++.|+||+||
T Consensus 96 ~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglL--SGGQRQalsL~MAtl~~pkiLLLD 173 (263)
T COG1101 96 ELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLL--SGGQRQALSLLMATLHPPKILLLD 173 (263)
T ss_pred cccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhc--cchHHHHHHHHHHhcCCCcEEEec
Confidence 7888888765311 11 111111111111 1134445555 999999999999999999999999
Q ss_pred CCCCCCCcCCC
Q psy10767 137 EPTVGLDPVLS 147 (149)
Q Consensus 137 EPt~gLD~~~~ 147 (149)
|=|++|||...
T Consensus 174 EHTAALDPkta 184 (263)
T COG1101 174 EHTAALDPKTA 184 (263)
T ss_pred chhhcCCcchH
Confidence 99999999854
No 353
>PLN03130 ABC transporter C family member; Provisional
Probab=99.97 E-value=3.7e-30 Score=238.17 Aligned_cols=132 Identities=21% Similarity=0.338 Sum_probs=101.4
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCc-ceEEECCeecceeeeeecCcccccCcccccCChhHHHh
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDH-GSISLSARTVRDIGYMPQVGLMRSGALLAEDSPSYLLE 82 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~-G~i~~~g~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~ 82 (149)
++|+|+||++++|+.++|+||+|||||||+++|+|.++|++ |+|.+.+ .|+|++|++.++ ..++.+|..
T Consensus 631 ~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~~----~Iayv~Q~p~Lf------ngTIreNI~ 700 (1622)
T PLN03130 631 PTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRG----TVAYVPQVSWIF------NATVRDNIL 700 (1622)
T ss_pred ceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEcC----eEEEEcCccccC------CCCHHHHHh
Confidence 57999999999999999999999999999999999999999 9999865 599999995433 345666665
Q ss_pred hcccCchHHHHHHHhhhhHH----------HHhhcCC--CCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCC
Q psy10767 83 YYNCSTLEDVFLYLCEQDQI----------LFSLVGS--ESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVL 146 (149)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~----------~~~~~~~--~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~ 146 (149)
+.... .++...++.+...+ ....++. ..||||||||++||||+.++|+|+|||||||+||+.+
T Consensus 701 fg~~~-d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~ 775 (1622)
T PLN03130 701 FGSPF-DPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHV 775 (1622)
T ss_pred CCCcc-cHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHH
Confidence 53221 22222222222111 1222222 2479999999999999999999999999999999864
No 354
>PLN03232 ABC transporter C family member; Provisional
Probab=99.96 E-value=7.3e-30 Score=235.34 Aligned_cols=133 Identities=23% Similarity=0.356 Sum_probs=99.2
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEE-ECCeecceeeeeecCcccccCcccccCChhHHHh
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSIS-LSARTVRDIGYMPQVGLMRSGALLAEDSPSYLLE 82 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~-~~g~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~ 82 (149)
++|+|+||++++|+.++|+||+|||||||+++|+|.++|++|.+. +. ..|+|++|++.++ ..++.+|..
T Consensus 631 ~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~~~----~~Iayv~Q~p~Lf------~gTIreNI~ 700 (1495)
T PLN03232 631 PTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIR----GSVAYVPQVSWIF------NATVRENIL 700 (1495)
T ss_pred ceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEEec----CcEEEEcCccccc------cccHHHHhh
Confidence 589999999999999999999999999999999999999998664 32 3699999995443 345666665
Q ss_pred hcccCchHHHHHHHhhhhHH---H-------HhhcCC--CCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCCC
Q psy10767 83 YYNCSTLEDVFLYLCEQDQI---L-------FSLVGS--ESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~---~-------~~~~~~--~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~~ 147 (149)
+... ..++...++++...+ . ...++. ..||||||||++||||+.++|+|+||||||++||+.+.
T Consensus 701 fg~~-~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~ 776 (1495)
T PLN03232 701 FGSD-FESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVA 776 (1495)
T ss_pred cCCc-cCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHH
Confidence 5321 122222222222111 1 122222 24799999999999999999999999999999998753
No 355
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.96 E-value=2.1e-30 Score=191.91 Aligned_cols=134 Identities=24% Similarity=0.286 Sum_probs=102.0
Q ss_pred ceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECC-eec----------ceeeeeecCcccccCcccc
Q psy10767 5 SASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSA-RTV----------RDIGYMPQVGLMRSGALLA 73 (149)
Q Consensus 5 ~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g-~~~----------~~i~~~~q~~~~~~~~~~~ 73 (149)
+++++||++.+||.-+|||||||||||+|.+|+|..+|++|+++++| .++ ..||--||.+ ..+.
T Consensus 20 Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~GIGRKFQ~P-----tVfe 94 (249)
T COG4674 20 ALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAGIGRKFQKP-----TVFE 94 (249)
T ss_pred eeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhccCccccCC-----eehh
Confidence 68999999999999999999999999999999999999999999998 554 2378888884 4455
Q ss_pred cCChhHHHhhcc-------------cCc-hHHHHHHHhhhhHH---HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEc
Q psy10767 74 EDSPSYLLEYYN-------------CST-LEDVFLYLCEQDQI---LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILD 136 (149)
Q Consensus 74 ~~~~~~~~~~~~-------------~~~-~~~~~~~~~~~~~~---~~~~~~~~~~sgGqkqrv~iaral~~~p~illlD 136 (149)
..++.+|+.... ... .+++++..+...++ .+..... ||.|||||+.|++.++++|++|++|
T Consensus 95 ~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~--LSHGqKQwLEIGMll~Q~P~lLLlD 172 (249)
T COG4674 95 NLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAAL--LSHGQKQWLEIGMLLAQDPKLLLLD 172 (249)
T ss_pred hccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhh--hccchhhhhhhheeeccCCcEEEec
Confidence 566666655421 011 12233444433333 2222233 4899999999999999999999999
Q ss_pred CCCCCCCcC
Q psy10767 137 EPTVGLDPV 145 (149)
Q Consensus 137 EPt~gLD~~ 145 (149)
||++||-..
T Consensus 173 EPvAGMTd~ 181 (249)
T COG4674 173 EPVAGMTDA 181 (249)
T ss_pred CccCCCcHH
Confidence 999999643
No 356
>KOG0061|consensus
Probab=99.96 E-value=1.3e-29 Score=216.88 Aligned_cols=138 Identities=31% Similarity=0.446 Sum_probs=105.3
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccC---CcceEEECCeec------ceeeeeecCcccccCccccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRL---DHGSISLSARTV------RDIGYMPQVGLMRSGALLAE 74 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~---~~G~i~~~g~~~------~~i~~~~q~~~~~~~~~~~~ 74 (149)
.+|++||..+++||+.||+||+||||||||++|+|.... .+|+|.+||+.. +..+||.|++. +.+.
T Consensus 44 ~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~-----l~~~ 118 (613)
T KOG0061|consen 44 TILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDV-----LLPT 118 (613)
T ss_pred eeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEccccc-----cccc
Confidence 479999999999999999999999999999999999875 689999999543 34899999854 3455
Q ss_pred CChhHHHhhc---ccC---c---hHHHHHHHhhhhHH---HHhhcCC---CCCChhHHHHHHHHHHHhcCCCEEEEcCCC
Q psy10767 75 DSPSYLLEYY---NCS---T---LEDVFLYLCEQDQI---LFSLVGS---ESAFGGQQRRVSFAVSLIHDPKILILDEPT 139 (149)
Q Consensus 75 ~~~~~~~~~~---~~~---~---~~~~~~~~~~~~~~---~~~~~~~---~~~sgGqkqrv~iaral~~~p~illlDEPt 139 (149)
.++.+...+. ... . .+++++.+.+..++ .+..++. ..+|||||+||+||.-++++|+||++||||
T Consensus 119 LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPT 198 (613)
T KOG0061|consen 119 LTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPT 198 (613)
T ss_pred ccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCC
Confidence 5666655442 111 1 13344444444433 2333332 457999999999999999999999999999
Q ss_pred CCCCcCC
Q psy10767 140 VGLDPVL 146 (149)
Q Consensus 140 ~gLD~~~ 146 (149)
+|||..+
T Consensus 199 SGLDS~s 205 (613)
T KOG0061|consen 199 SGLDSFS 205 (613)
T ss_pred CCcchhh
Confidence 9999864
No 357
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.96 E-value=1e-29 Score=193.36 Aligned_cols=139 Identities=19% Similarity=0.251 Sum_probs=103.3
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeecceeeeeecCcccccCcccccCChhHHHhh
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAEDSPSYLLEY 83 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~ 83 (149)
.+|+||||++.+||.+||+|+||||||||+|+|+|.++|++|+|.++|+ ++++.....-+.+.++.++++..+..+
T Consensus 41 ~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~----v~~li~lg~Gf~pelTGreNi~l~~~~ 116 (249)
T COG1134 41 WALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGK----VAPLIELGAGFDPELTGRENIYLRGLI 116 (249)
T ss_pred EEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcce----EehhhhcccCCCcccchHHHHHHHHHH
Confidence 4799999999999999999999999999999999999999999999995 333333222222333444555544444
Q ss_pred cccCc--hHHHHHHHhhh---hHHHHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCCCC
Q psy10767 84 YNCST--LEDVFLYLCEQ---DQILFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLSF 148 (149)
Q Consensus 84 ~~~~~--~~~~~~~~~~~---~~~~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~~~ 148 (149)
++... .++..+++.+. .+..+.++... |.||+-|++++.|...+|+|||+||-.+.-|+..+.
T Consensus 117 ~G~~~~ei~~~~~eIieFaELG~fi~~PvktY--SSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~ 184 (249)
T COG1134 117 LGLTRKEIDEKVDEIIEFAELGDFIDQPVKTY--SSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQE 184 (249)
T ss_pred hCccHHHHHHHHHHHHHHHHHHHHhhCchhhc--cHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHH
Confidence 44332 23334443333 33356666666 899999999999999999999999999999986543
No 358
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.96 E-value=1.9e-29 Score=212.21 Aligned_cols=136 Identities=26% Similarity=0.261 Sum_probs=101.7
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeecceeeeeecCcccccCcccccCChhHHHhh
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAEDSPSYLLEY 83 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~ 83 (149)
++++++||.+..|+.+||+||||||||||||+|+|...|.+|+|.+... -++||+.|+.. .+....++.+....
T Consensus 336 ~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~--v~igyf~Q~~~----~l~~~~t~~d~l~~ 409 (530)
T COG0488 336 LLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGET--VKIGYFDQHRD----ELDPDKTVLEELSE 409 (530)
T ss_pred eeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCc--eEEEEEEehhh----hcCccCcHHHHHHh
Confidence 5789999999999999999999999999999999999999999998543 47999999842 11233345444433
Q ss_pred cccCchHHHHHHHhhhhHH----HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCCC
Q psy10767 84 YNCSTLEDVFLYLCEQDQI----LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~~ 147 (149)
......+..+...+..+.. ..+++.. ||||||.|+.+|+.++.+|.+||||||||+||..++
T Consensus 410 ~~~~~~e~~~r~~L~~f~F~~~~~~~~v~~--LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~ 475 (530)
T COG0488 410 GFPDGDEQEVRAYLGRFGFTGEDQEKPVGV--LSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESL 475 (530)
T ss_pred hCccccHHHHHHHHHHcCCChHHHhCchhh--cCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHH
Confidence 2211112333333333222 3344444 499999999999999999999999999999998764
No 359
>PTZ00243 ABC transporter; Provisional
Probab=99.96 E-value=2.6e-29 Score=232.16 Aligned_cols=132 Identities=20% Similarity=0.331 Sum_probs=98.1
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeecceeeeeecCcccccCcccccCChhHHHhh
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAEDSPSYLLEY 83 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~ 83 (149)
++++|+||++++|++++|+||||||||||+++|+|+++|++|+|.+.+ .|+|++|++.. + ..++.++..+
T Consensus 674 ~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~~----~i~yv~Q~~~l-----~-~~Tv~enI~~ 743 (1560)
T PTZ00243 674 VLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAER----SIAYVPQQAWI-----M-NATVRGNILF 743 (1560)
T ss_pred eeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC----eEEEEeCCCcc-----C-CCcHHHHHHc
Confidence 479999999999999999999999999999999999999999999853 69999998532 2 2456666654
Q ss_pred cccCchHHHHHHHhhh------hHH----HHhhc--CCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCC
Q psy10767 84 YNCSTLEDVFLYLCEQ------DQI----LFSLV--GSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVL 146 (149)
Q Consensus 84 ~~~~~~~~~~~~~~~~------~~~----~~~~~--~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~ 146 (149)
..... .+......+. ... ..... ....||||||||++||||++.+|+++||||||++||+..
T Consensus 744 ~~~~~-~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~ 817 (1560)
T PTZ00243 744 FDEED-AARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHV 817 (1560)
T ss_pred CChhh-HHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHH
Confidence 32111 1111111111 000 11111 223569999999999999999999999999999999864
No 360
>PLN03140 ABC transporter G family member; Provisional
Probab=99.96 E-value=7.6e-30 Score=234.10 Aligned_cols=139 Identities=24% Similarity=0.350 Sum_probs=102.1
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCC---cceEEECCeec------ceeeeeecCcccccCccccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLD---HGSISLSARTV------RDIGYMPQVGLMRSGALLAE 74 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~---~G~i~~~g~~~------~~i~~~~q~~~~~~~~~~~~ 74 (149)
.+|+|+|+.+++||+++|+||||||||||||+|+|.++|+ +|+|.++|+++ +.++|++|++.+ .+.
T Consensus 179 ~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~-----~~~ 253 (1470)
T PLN03140 179 TILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVH-----VGV 253 (1470)
T ss_pred eeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccC-----CCc
Confidence 3799999999999999999999999999999999999998 99999999865 358999998533 344
Q ss_pred CChhHHHhhcc-cC----------c--hHH---------------------------HHHHHhhhhHHH---HhhcC---
Q psy10767 75 DSPSYLLEYYN-CS----------T--LED---------------------------VFLYLCEQDQIL---FSLVG--- 108 (149)
Q Consensus 75 ~~~~~~~~~~~-~~----------~--~~~---------------------------~~~~~~~~~~~~---~~~~~--- 108 (149)
.++.+++.+.. .. . ..+ ..+.+++..++. +..++
T Consensus 254 lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~ 333 (1470)
T PLN03140 254 MTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEM 333 (1470)
T ss_pred CcHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCcc
Confidence 45555544320 00 0 000 011222222221 11111
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCCC
Q psy10767 109 SESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 109 ~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~~ 147 (149)
...+||||||||+||++|+.+|++++|||||+|||+..+
T Consensus 334 ~rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~ 372 (1470)
T PLN03140 334 IRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTT 372 (1470)
T ss_pred ccCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHH
Confidence 235699999999999999999999999999999998754
No 361
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.5e-29 Score=204.35 Aligned_cols=138 Identities=28% Similarity=0.415 Sum_probs=105.6
Q ss_pred ccceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeecc---------eeeeeecCcccccCcccc
Q psy10767 3 DVSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVR---------DIGYMPQVGLMRSGALLA 73 (149)
Q Consensus 3 ~~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~~---------~i~~~~q~~~~~~~~~~~ 73 (149)
.++|+++||+++.|+.++++||+|+||||++++|-+++++++|.|.++|++++ .||.+||+..++
T Consensus 276 r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~aIg~VPQDtvLF------ 349 (497)
T COG5265 276 RPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLF------ 349 (497)
T ss_pred chhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHHhCcCcccceeh------
Confidence 46899999999999999999999999999999999999999999999999873 499999985433
Q ss_pred cCChhHHHhhcccCchHHHHHHHhhhhHH----------HHhhcCC--CCCChhHHHHHHHHHHHhcCCCEEEEcCCCCC
Q psy10767 74 EDSPSYLLEYYNCSTLEDVFLYLCEQDQI----------LFSLVGS--ESAFGGQQRRVSFAVSLIHDPKILILDEPTVG 141 (149)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~--~~~sgGqkqrv~iaral~~~p~illlDEPt~g 141 (149)
+++..++..+-+....++......+...+ ....++. +.+||||||||+|||+++.+|+|++|||.||+
T Consensus 350 NDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~p~il~~deatsa 429 (497)
T COG5265 350 NDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSA 429 (497)
T ss_pred hhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcCCCEEEEehhhhH
Confidence 45566666554332222222122221111 1222222 35699999999999999999999999999999
Q ss_pred CCcCC
Q psy10767 142 LDPVL 146 (149)
Q Consensus 142 LD~~~ 146 (149)
||...
T Consensus 430 ldt~t 434 (497)
T COG5265 430 LDTHT 434 (497)
T ss_pred hhhhH
Confidence 99753
No 362
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=9.3e-29 Score=180.92 Aligned_cols=143 Identities=26% Similarity=0.379 Sum_probs=97.3
Q ss_pred ceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCee---c---------------ceeeeeecCccc
Q psy10767 5 SASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSART---V---------------RDIGYMPQVGLM 66 (149)
Q Consensus 5 ~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~---~---------------~~i~~~~q~~~~ 66 (149)
.-+++||.+.+||+.||+|+||||||||++||++-+.|++|+|.+...+ . .+.|||.|++.-
T Consensus 21 gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEaeRR~L~RTeWG~VhQnP~D 100 (258)
T COG4107 21 GCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERRRLLRTEWGFVHQNPRD 100 (258)
T ss_pred CccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHHHHHHhhhccceeecCccc
Confidence 4579999999999999999999999999999999999999999995422 1 247899998642
Q ss_pred ccCcc-cccCChhHHHhhccc---CchHHHHHHHhhhhHHHHhhcC--CCCCChhHHHHHHHHHHHhcCCCEEEEcCCCC
Q psy10767 67 RSGAL-LAEDSPSYLLEYYNC---STLEDVFLYLCEQDQILFSLVG--SESAFGGQQRRVSFAVSLIHDPKILILDEPTV 140 (149)
Q Consensus 67 ~~~~~-~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~--~~~~sgGqkqrv~iaral~~~p~illlDEPt~ 140 (149)
...+- ...-++-+..-..+. -.....+..+++...+...++. ...+||||+||+.|||-|+..|++++|||||.
T Consensus 101 GLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQiARnLVt~PrLvfMDEPTG 180 (258)
T COG4107 101 GLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTG 180 (258)
T ss_pred cceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchHHHHHHHHHHHhccCCceEEecCCCC
Confidence 11100 001111111111111 1123333344444444222221 12359999999999999999999999999999
Q ss_pred CCCcCCC
Q psy10767 141 GLDPVLS 147 (149)
Q Consensus 141 gLD~~~~ 147 (149)
|||...+
T Consensus 181 GLDVSVQ 187 (258)
T COG4107 181 GLDVSVQ 187 (258)
T ss_pred CcchhhH
Confidence 9998754
No 363
>KOG0059|consensus
Probab=99.96 E-value=2.2e-29 Score=222.93 Aligned_cols=138 Identities=30% Similarity=0.500 Sum_probs=111.1
Q ss_pred ceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeecc----------eeeeeecCcccccCccccc
Q psy10767 5 SASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVR----------DIGYMPQVGLMRSGALLAE 74 (149)
Q Consensus 5 ~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~~----------~i~~~~q~~~~~~~~~~~~ 74 (149)
+++++|+.+++||+.|+.|+|||||||++++|+|..+|++|++++.|.++. .+||.||. ..+...
T Consensus 580 Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~-----d~l~~~ 654 (885)
T KOG0059|consen 580 AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQLGYCPQF-----DALWEE 654 (885)
T ss_pred hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhhcccCCch-----hhhhhh
Confidence 689999999999999999999999999999999999999999999887763 39999998 344556
Q ss_pred CChhHHHhhc----ccC--chHHHHHHHhhhhHH---HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcC
Q psy10767 75 DSPSYLLEYY----NCS--TLEDVFLYLCEQDQI---LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPV 145 (149)
Q Consensus 75 ~~~~~~~~~~----~~~--~~~~~~~~~~~~~~~---~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~ 145 (149)
.+..+...++ +.. ...+.+++.++.+++ .++..+.+ |||+|+|+++|.|++-+|++++|||||+|+||.
T Consensus 655 lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~y--SgG~kRkLs~aialig~p~vi~LDEPstGmDP~ 732 (885)
T KOG0059|consen 655 LTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTY--SGGNKRRLSFAIALIGDPSVILLDEPSTGLDPK 732 (885)
T ss_pred ccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhC--CCcchhhHHHHHHHhcCCCEEEecCCCCCCCHH
Confidence 6666666654 222 234445555554444 33444444 999999999999999999999999999999998
Q ss_pred CCCC
Q psy10767 146 LSFS 149 (149)
Q Consensus 146 ~~~~ 149 (149)
.|++
T Consensus 733 arr~ 736 (885)
T KOG0059|consen 733 ARRH 736 (885)
T ss_pred HHHH
Confidence 8753
No 364
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.96 E-value=1.1e-28 Score=198.87 Aligned_cols=142 Identities=27% Similarity=0.313 Sum_probs=103.1
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccC-----CcceEEECCeec-------------ceeeeeecCcc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRL-----DHGSISLSARTV-------------RDIGYMPQVGL 65 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~-----~~G~i~~~g~~~-------------~~i~~~~q~~~ 65 (149)
.++++|||++..||.+||+|+||||||-..+.|+|+++. .+|+|.|+|.++ .+|+++||++.
T Consensus 24 ~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr~iRG~~I~MIFQEPM 103 (534)
T COG4172 24 EAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQEPM 103 (534)
T ss_pred EeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHhhhcccceEEEecccc
Confidence 478999999999999999999999999999999999854 268999999886 36999999953
Q ss_pred cccCcc-cccCChhHHHhhccc---CchHHHHHHHhhhhHH------HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEE
Q psy10767 66 MRSGAL-LAEDSPSYLLEYYNC---STLEDVFLYLCEQDQI------LFSLVGSESAFGGQQRRVSFAVSLIHDPKILIL 135 (149)
Q Consensus 66 ~~~~~~-~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~------~~~~~~~~~~sgGqkqrv~iaral~~~p~illl 135 (149)
-..+-+ .....+.+....+.. ...+.++.++++.+++ +..+.+.+ ||||||||.||+||+++|++||.
T Consensus 104 tSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeL--SGGqRQRVMIAMALan~P~lLIA 181 (534)
T COG4172 104 TSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHEL--SGGQRQRVMIAMALANEPDLLIA 181 (534)
T ss_pred cccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCccc--CcchhhHHHHHHHHcCCCCeEee
Confidence 211110 001112222222211 1123344445554443 34444444 99999999999999999999999
Q ss_pred cCCCCCCCcCCC
Q psy10767 136 DEPTVGLDPVLS 147 (149)
Q Consensus 136 DEPt~gLD~~~~ 147 (149)
||||++||...+
T Consensus 182 DEPTTALDVtvQ 193 (534)
T COG4172 182 DEPTTALDVTVQ 193 (534)
T ss_pred cCCcchhhhhhH
Confidence 999999998754
No 365
>PLN03073 ABC transporter F family; Provisional
Probab=99.95 E-value=3.4e-29 Score=217.45 Aligned_cols=144 Identities=21% Similarity=0.230 Sum_probs=87.1
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCc---cCCcceEEECCeecc-----------------------ee
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRL---RLDHGSISLSARTVR-----------------------DI 57 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~---~~~~G~i~~~g~~~~-----------------------~i 57 (149)
.+|+|+||+|.+|+++||+||||||||||||+|+|.. .|++|+|.+.++... .+
T Consensus 191 ~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~~v~~~~~~~~~~~~~~~ 270 (718)
T PLN03073 191 DLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQCVLNTDIERTQLLEEEA 270 (718)
T ss_pred EEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHHHHHHhhHHHHHHHHHHH
Confidence 4799999999999999999999999999999999964 577888876443210 02
Q ss_pred eeeecCcccccCcccc-----------cCCh----hHHHhhc---ccCchHHHHHHHhhhhHHH--HhhcCCCCCChhHH
Q psy10767 58 GYMPQVGLMRSGALLA-----------EDSP----SYLLEYY---NCSTLEDVFLYLCEQDQIL--FSLVGSESAFGGQQ 117 (149)
Q Consensus 58 ~~~~q~~~~~~~~~~~-----------~~~~----~~~~~~~---~~~~~~~~~~~~~~~~~~~--~~~~~~~~~sgGqk 117 (149)
++++|.+......... .... .+....+ .....+..+..++..+++. ........||||||
T Consensus 271 ~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lgl~~~~~~~~~~~LSgG~k 350 (718)
T PLN03073 271 QLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSFTPEMQVKATKTFSGGWR 350 (718)
T ss_pred HHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCCCChHHHhCchhhCCHHHH
Confidence 3333321100000000 0000 0000000 0001112222222222221 01112235699999
Q ss_pred HHHHHHHHHhcCCCEEEEcCCCCCCCcCCC
Q psy10767 118 RRVSFAVSLIHDPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 118 qrv~iaral~~~p~illlDEPt~gLD~~~~ 147 (149)
||++|||||+.+|++|||||||++||+..+
T Consensus 351 ~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~ 380 (718)
T PLN03073 351 MRIALARALFIEPDLLLLDEPTNHLDLHAV 380 (718)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCCCCHHHH
Confidence 999999999999999999999999998754
No 366
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.95 E-value=3.9e-28 Score=181.94 Aligned_cols=121 Identities=14% Similarity=0.148 Sum_probs=86.1
Q ss_pred ecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCC---------cceEEECCeec------ceeeeeecCcccccCcc
Q psy10767 7 SSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLD---------HGSISLSARTV------RDIGYMPQVGLMRSGAL 71 (149)
Q Consensus 7 ~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~---------~G~i~~~g~~~------~~i~~~~q~~~~~~~~~ 71 (149)
+++++++.+| +++|+||||||||||+++|+|+..+. .|++.+.|++. ..++++||++..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~---- 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGR---- 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCc----
Confidence 5789999999 99999999999999999999998655 24677766653 4689999985432
Q ss_pred cccCChhHHHhhcccCchHHHHHHHhhhhHHHHhhcCCCCCChhHHHHHHHHHHHh----cCCCEEEEcCCCCCCCcCCC
Q psy10767 72 LAEDSPSYLLEYYNCSTLEDVFLYLCEQDQILFSLVGSESAFGGQQRRVSFAVSLI----HDPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgGqkqrv~iaral~----~~p~illlDEPt~gLD~~~~ 147 (149)
+.. .. .....++++..+....... .+|+|||||++|||+++ .+|++++|||||++||+..+
T Consensus 89 ~~~------------~~-~~~~~~~l~~~~~~~~~~~--~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~ 153 (197)
T cd03278 89 YSI------------IS-QGDVSEIIEAPGKKVQRLS--LLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANV 153 (197)
T ss_pred eeE------------Ee-hhhHHHHHhCCCccccchh--hcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHH
Confidence 000 00 1111122222111222333 45999999999999997 46799999999999998754
No 367
>KOG0054|consensus
Probab=99.94 E-value=9.6e-27 Score=209.98 Aligned_cols=137 Identities=24% Similarity=0.345 Sum_probs=104.6
Q ss_pred ccceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec---------ceeeeeecCcccccCcccc
Q psy10767 3 DVSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV---------RDIGYMPQVGLMRSGALLA 73 (149)
Q Consensus 3 ~~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~---------~~i~~~~q~~~~~~~~~~~ 73 (149)
..+||||||+|++||.+||+|..|||||||+++|-++..|.+|+|.+||.++ .+++++||+|.++.+.+-.
T Consensus 1153 p~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR~ 1232 (1381)
T KOG0054|consen 1153 PLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVRF 1232 (1381)
T ss_pred cchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecCcccc
Confidence 4689999999999999999999999999999999999999999999999987 3588999998888776544
Q ss_pred cCChhHHHhhcccCchHHHHHHHhhhhHH----------HHhhcCC--CCCChhHHHHHHHHHHHhcCCCEEEEcCCCCC
Q psy10767 74 EDSPSYLLEYYNCSTLEDVFLYLCEQDQI----------LFSLVGS--ESAFGGQQRRVSFAVSLIHDPKILILDEPTVG 141 (149)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~--~~~sgGqkqrv~iaral~~~p~illlDEPt~g 141 (149)
+..+.+ ...+++.. ++++...+ ++..+.+ ..+|-||||.+||||||+++++||+|||+|++
T Consensus 1233 NLDPf~------e~sD~~IW-~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAs 1305 (1381)
T KOG0054|consen 1233 NLDPFD------EYSDDEIW-EALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATAS 1305 (1381)
T ss_pred ccCccc------ccCHHHHH-HHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEeccccc
Confidence 433221 11111111 11111111 1111211 34689999999999999999999999999999
Q ss_pred CCcCC
Q psy10767 142 LDPVL 146 (149)
Q Consensus 142 LD~~~ 146 (149)
+|+..
T Consensus 1306 VD~~T 1310 (1381)
T KOG0054|consen 1306 VDPET 1310 (1381)
T ss_pred CChHH
Confidence 99863
No 368
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.94 E-value=9.7e-27 Score=177.60 Aligned_cols=135 Identities=16% Similarity=0.214 Sum_probs=76.1
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHH-HHHhcCccCCcceEEEC-----------------C-eec--ceeeeeec
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLL-SCIVNRLRLDHGSISLS-----------------A-RTV--RDIGYMPQ 62 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl-~~i~g~~~~~~G~i~~~-----------------g-~~~--~~i~~~~q 62 (149)
.+++++||++++||++||+||||||||||+ ..|.. +|++.+. . ... ....+..+
T Consensus 9 ~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~-----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (226)
T cd03270 9 HNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYA-----EGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPAIAID 83 (226)
T ss_pred hccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHH-----HHHHHHhhcccchhhhhhcccCccccccccCCCceEEec
Confidence 478999999999999999999999999995 44431 2221110 0 000 01222333
Q ss_pred CcccccCcccccCChh---HHHhhc----ccCchHHHHHHHhhhhHHHH--hhcCCCCCChhHHHHHHHHHHHhcCC--C
Q psy10767 63 VGLMRSGALLAEDSPS---YLLEYY----NCSTLEDVFLYLCEQDQILF--SLVGSESAFGGQQRRVSFAVSLIHDP--K 131 (149)
Q Consensus 63 ~~~~~~~~~~~~~~~~---~~~~~~----~~~~~~~~~~~~~~~~~~~~--~~~~~~~~sgGqkqrv~iaral~~~p--~ 131 (149)
+... ...+..++. +...+. ........ ...++.+++.. .......+|+|||||++|||||+.+| +
T Consensus 84 ~~~~---~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~~~ 159 (226)
T cd03270 84 QKTT---SRNPRSTVGTVTEIYDYLRLLFARVGIRER-LGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLTGV 159 (226)
T ss_pred CCCC---CCCCCccHHHHHHHHHHHHHHhhhhhHHHH-HHHHHHCCCCcccccCccCcCCHHHHHHHHHHHHHHhCCCCC
Confidence 2211 001111111 111111 11111111 12233332211 11223356999999999999999998 5
Q ss_pred EEEEcCCCCCCCcCCC
Q psy10767 132 ILILDEPTVGLDPVLS 147 (149)
Q Consensus 132 illlDEPt~gLD~~~~ 147 (149)
++||||||++||+..+
T Consensus 160 llllDEPt~gLD~~~~ 175 (226)
T cd03270 160 LYVLDEPSIGLHPRDN 175 (226)
T ss_pred EEEEeCCccCCCHHHH
Confidence 9999999999998754
No 369
>KOG0054|consensus
Probab=99.93 E-value=5.4e-26 Score=205.19 Aligned_cols=134 Identities=22% Similarity=0.372 Sum_probs=102.8
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeecceeeeeecCcccccCcccccCChhHHHhh
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAEDSPSYLLEY 83 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~ 83 (149)
++|+||||.+++|+.+||+|+-|||||+|+.+|.|..+..+|++.++|. ++|++|.+-.++ -++.+|..+
T Consensus 535 ~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gs----iaYv~Q~pWI~n------gTvreNILF 604 (1381)
T KOG0054|consen 535 PTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGS----VAYVPQQPWIQN------GTVRENILF 604 (1381)
T ss_pred ccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCe----EEEeccccHhhC------CcHHHhhhc
Confidence 4899999999999999999999999999999999999999999999995 999999854333 345556544
Q ss_pred cccCchHHHHHHHhhhhH----H------HHhhcCC--CCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCCCC
Q psy10767 84 YNCSTLEDVFLYLCEQDQ----I------LFSLVGS--ESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLSF 148 (149)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~----~------~~~~~~~--~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~~~ 148 (149)
-. ...+++.++..+... + ....+++ ..||||||||++||||+.+++||++||.|+|++|..+-+
T Consensus 605 G~-~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~ 680 (1381)
T KOG0054|consen 605 GS-PYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGK 680 (1381)
T ss_pred Cc-cccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhH
Confidence 32 222333333322211 1 1122232 247999999999999999999999999999999987644
No 370
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.93 E-value=5.8e-26 Score=174.13 Aligned_cols=38 Identities=24% Similarity=0.345 Sum_probs=33.5
Q ss_pred CCCChhHHHHHHHHHHHhc----CCCEEEEcCCCCCCCcCCC
Q psy10767 110 ESAFGGQQRRVSFAVSLIH----DPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 110 ~~~sgGqkqrv~iaral~~----~p~illlDEPt~gLD~~~~ 147 (149)
..+|+|||||++||||++. +|+++|+||||++||+..+
T Consensus 157 ~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~ 198 (243)
T cd03272 157 QQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYR 198 (243)
T ss_pred cccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHH
Confidence 3459999999999999973 6899999999999999754
No 371
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.92 E-value=1e-24 Score=184.22 Aligned_cols=136 Identities=28% Similarity=0.340 Sum_probs=99.2
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeecceeeeeecCcccccCcccccCChhHHHhh
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAEDSPSYLLEY 83 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~ 83 (149)
+.++++||++++||-+-|.||||||||||+|+|+|+.+--+|+|.+-.. .++-|+||.+++..+. ..+...+
T Consensus 407 ~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~--~~~lflpQ~PY~p~Gt------Lre~l~Y 478 (604)
T COG4178 407 TLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPAD--SALLFLPQRPYLPQGT------LREALCY 478 (604)
T ss_pred eeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCC--CceEEecCCCCCCCcc------HHHHHhC
Confidence 5689999999999999999999999999999999999988999988622 3589999997665543 2333333
Q ss_pred cccC--chHHHHHHHhhhhHH---HHhhc----CCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCCC
Q psy10767 84 YNCS--TLEDVFLYLCEQDQI---LFSLV----GSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 84 ~~~~--~~~~~~~~~~~~~~~---~~~~~----~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~~ 147 (149)
.... ..++.....+..+++ ..+.- -...||+|||||+++||.++++|++++|||.|++||+...
T Consensus 479 P~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e 551 (604)
T COG4178 479 PNAAPDFSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETE 551 (604)
T ss_pred CCCCCCCChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHH
Confidence 2111 112223333333222 11111 1123599999999999999999999999999999998753
No 372
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.91 E-value=4.8e-24 Score=166.02 Aligned_cols=143 Identities=18% Similarity=0.126 Sum_probs=82.2
Q ss_pred ceecceEEEeCCcEEEEECCCCCCHHHHHHHHh-----cC-----ccCCcceEEECCeecceeeeeecCcccccCccc--
Q psy10767 5 SASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIV-----NR-----LRLDHGSISLSARTVRDIGYMPQVGLMRSGALL-- 72 (149)
Q Consensus 5 ~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~-----g~-----~~~~~G~i~~~g~~~~~i~~~~q~~~~~~~~~~-- 72 (149)
-|+|+++.|+.|.+++|+|+||||||||++.+. .. ..|..++.....+.+.++-++.|.+.-..+...
T Consensus 10 nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~~~ 89 (261)
T cd03271 10 NLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSNPA 89 (261)
T ss_pred cCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCcHH
Confidence 478999999999999999999999999999762 11 123333333333334445555554421111100
Q ss_pred ---------------------------------------ccCChhHHHhhcccCchHHHHHHHhhhhHHH--HhhcCCCC
Q psy10767 73 ---------------------------------------AEDSPSYLLEYYNCSTLEDVFLYLCEQDQIL--FSLVGSES 111 (149)
Q Consensus 73 ---------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 111 (149)
...++.++..++............++.+++. ........
T Consensus 90 ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~~~~~~~~~L~~vgL~~l~l~~~~~~ 169 (261)
T cd03271 90 TYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIPKIARKLQTLCDVGLGYIKLGQPATT 169 (261)
T ss_pred HHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhhhHHHHHHHHHHcCCchhhhcCcccc
Confidence 0111111111110000000111112222221 11122235
Q ss_pred CChhHHHHHHHHHHHhcC---CCEEEEcCCCCCCCcCCC
Q psy10767 112 AFGGQQRRVSFAVSLIHD---PKILILDEPTVGLDPVLS 147 (149)
Q Consensus 112 ~sgGqkqrv~iaral~~~---p~illlDEPt~gLD~~~~ 147 (149)
+||||+||++|||+|+.+ |+++||||||+|||+..+
T Consensus 170 LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~ 208 (261)
T cd03271 170 LSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDV 208 (261)
T ss_pred CCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHH
Confidence 699999999999999996 799999999999998754
No 373
>KOG0927|consensus
Probab=99.91 E-value=1.1e-24 Score=180.33 Aligned_cols=137 Identities=26% Similarity=0.288 Sum_probs=93.6
Q ss_pred ceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeecceeeeeecCcccccCcccccCCh-hHHHhh
Q psy10767 5 SASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAEDSP-SYLLEY 83 (149)
Q Consensus 5 ~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~~~i~~~~q~~~~~~~~~~~~~~~-~~~~~~ 83 (149)
+.+++||.++.++.+++||||||||||||++++|.+.|+.|.|.-..+. .+++..|.... .+....+. .+....
T Consensus 405 iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~--~~~~y~Qh~~e---~ldl~~s~le~~~~~ 479 (614)
T KOG0927|consen 405 IYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHN--KLPRYNQHLAE---QLDLDKSSLEFMMPK 479 (614)
T ss_pred hhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccc--cchhhhhhhHh---hcCcchhHHHHHHHh
Confidence 5678889999999999999999999999999999999999999876543 45555554211 11111111 112222
Q ss_pred cccCchHHHHHHHhhhhHHH--HhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCC
Q psy10767 84 YNCSTLEDVFLYLCEQDQIL--FSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVL 146 (149)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~ 146 (149)
+......+.+..++..+++. ........||.|||.||.+|+.++..|.+|+|||||+|||...
T Consensus 480 ~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~t 544 (614)
T KOG0927|consen 480 FPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIET 544 (614)
T ss_pred ccccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCchh
Confidence 22112233344444444431 1112223459999999999999999999999999999999864
No 374
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.90 E-value=2.7e-24 Score=161.88 Aligned_cols=127 Identities=17% Similarity=0.177 Sum_probs=82.5
Q ss_pred cceEEEeCCcEEEEECCCCCCHHHHHHHHh----cCccCCcceEEEC------CeecceeeeeecCcccccCcccccCCh
Q psy10767 8 SLNTVIFGVTAYGLLGPSGCGKTTLLSCIV----NRLRLDHGSISLS------ARTVRDIGYMPQVGLMRSGALLAEDSP 77 (149)
Q Consensus 8 ~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~----g~~~~~~G~i~~~------g~~~~~i~~~~q~~~~~~~~~~~~~~~ 77 (149)
..++++.+| +++|+||||||||||+++|. |...|+.|.+..+ +.....+++++|+............++
T Consensus 15 ~~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~~ 93 (204)
T cd03240 15 RSEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLAI 93 (204)
T ss_pred ceEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhhH
Confidence 345677777 99999999999999999994 9988888765421 111245888888742111111111222
Q ss_pred hHHHhhcccCchHHHHHHHhhhhHHHHhhcCCCCCChhHHHH------HHHHHHHhcCCCEEEEcCCCCCCCcCCC
Q psy10767 78 SYLLEYYNCSTLEDVFLYLCEQDQILFSLVGSESAFGGQQRR------VSFAVSLIHDPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgGqkqr------v~iaral~~~p~illlDEPt~gLD~~~~ 147 (149)
.++..+. .+....+ ...+... .+|+||+|| ++||||++.+|+++++||||++||+..+
T Consensus 94 ~~~~~~~----~~~~~~~------~~~~~~~--~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~ 157 (204)
T cd03240 94 LENVIFC----HQGESNW------PLLDMRG--RCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENI 157 (204)
T ss_pred hhceeee----chHHHHH------HHhcCcc--ccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHH
Confidence 2222111 1111111 1233333 459999996 7899999999999999999999998754
No 375
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.89 E-value=3.4e-24 Score=172.72 Aligned_cols=132 Identities=19% Similarity=0.224 Sum_probs=95.8
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeecce---------eeeeecCcccccCccccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRD---------IGYMPQVGLMRSGALLAE 74 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~~~---------i~~~~q~~~~~~~~~~~~ 74 (149)
+-+..||++|+.||++-|+|.||||||||++.++|+++|++|+|.+||.++.. ++-+|.+- .+++.
T Consensus 337 FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDy-----hLF~~ 411 (546)
T COG4615 337 FHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDY-----HLFDQ 411 (546)
T ss_pred ceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhH-----hhhHh
Confidence 56789999999999999999999999999999999999999999999987521 22222221 11100
Q ss_pred CChhHHHhhcccC--chHHHHHHHhhhhHH------HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCC
Q psy10767 75 DSPSYLLEYYNCS--TLEDVFLYLCEQDQI------LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVL 146 (149)
Q Consensus 75 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~------~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~ 146 (149)
..+.+ ...+.+...++...+ .+.......+|.|||+|+++..|++.+-+|+++||=.+--||..
T Consensus 412 --------ll~~e~~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaF 483 (546)
T COG4615 412 --------LLGPEGKASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAF 483 (546)
T ss_pred --------hhCCccCCChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHH
Confidence 00111 122333333333333 23334455679999999999999999999999999999999987
Q ss_pred CC
Q psy10767 147 SF 148 (149)
Q Consensus 147 ~~ 148 (149)
|+
T Consensus 484 RR 485 (546)
T COG4615 484 RR 485 (546)
T ss_pred HH
Confidence 64
No 376
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.89 E-value=9.6e-24 Score=172.40 Aligned_cols=130 Identities=25% Similarity=0.348 Sum_probs=87.3
Q ss_pred eecceEEE-----eCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeecceeeeeecCcccccCcccccCChhHH
Q psy10767 6 ASSLNTVI-----FGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAEDSPSYL 80 (149)
Q Consensus 6 ~~~i~~~~-----~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~~~i~~~~q~~~~~~~~~~~~~~~~~~ 80 (149)
+.++.+++ ..||+++++||||-||||+.++|+|.++|++|+ ..+ -+++|-||--. .-...++.+.
T Consensus 352 ~g~F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~----~~~-~~vSyKPQyI~-----~~~~gtV~~~ 421 (591)
T COG1245 352 YGDFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS----EED-LKVSYKPQYIS-----PDYDGTVEDL 421 (591)
T ss_pred cCceEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC----Ccc-ceEeecceeec-----CCCCCcHHHH
Confidence 34555555 456679999999999999999999999999998 212 36888888421 1112233333
Q ss_pred Hhhccc-----CchHHHHHHHhhhhHHHHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCCC
Q psy10767 81 LEYYNC-----STLEDVFLYLCEQDQILFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 81 ~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~~ 147 (149)
+..... ...+..+..-+....++.+.+..+ ||||.|||+||.+|.+++++++||||++.||...|
T Consensus 422 l~~~~~~~~~~s~~~~ei~~pl~l~~i~e~~v~~L--SGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR 491 (591)
T COG1245 422 LRSAIRSAFGSSYFKTEIVKPLNLEDLLERPVDEL--SGGELQRVAIAAALSREADLYLLDEPSAYLDVEQR 491 (591)
T ss_pred HHHhhhhhcccchhHHhhcCccchHHHHhcccccC--CchhHHHHHHHHHhccccCEEEecCchhhccHHHH
Confidence 221100 001111111122223355555555 99999999999999999999999999999998765
No 377
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.89 E-value=8.3e-24 Score=163.48 Aligned_cols=133 Identities=17% Similarity=0.143 Sum_probs=80.6
Q ss_pred CCcEEEEECCCCCCHHHHHHHHhcCccCC-cceEEECCe-e-----------cceeeeeecCcccc--------cCcccc
Q psy10767 15 GVTAYGLLGPSGCGKTTLLSCIVNRLRLD-HGSISLSAR-T-----------VRDIGYMPQVGLMR--------SGALLA 73 (149)
Q Consensus 15 ~g~~~~iiG~nGaGKSTLl~~i~g~~~~~-~G~i~~~g~-~-----------~~~i~~~~q~~~~~--------~~~~~~ 73 (149)
...+.+|+||||||||||+++|++++.++ .|++++.+. + ..++++++|++... .+.+..
T Consensus 24 ~~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV 103 (251)
T cd03273 24 DPQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITV 103 (251)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEE
Confidence 35689999999999999999999999876 457777554 1 13688899874210 001111
Q ss_pred cCChhHHH--hh-cc-cCchHHHHHHHhhhhHHH---------------------HhhcCCCCCChhHHHHHHHHHHHh-
Q psy10767 74 EDSPSYLL--EY-YN-CSTLEDVFLYLCEQDQIL---------------------FSLVGSESAFGGQQRRVSFAVSLI- 127 (149)
Q Consensus 74 ~~~~~~~~--~~-~~-~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~sgGqkqrv~iaral~- 127 (149)
...+.... .+ .. .....+.+...++.+++. ........+|+|||||++||||++
T Consensus 104 ~r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~ 183 (251)
T cd03273 104 TRQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLILAL 183 (251)
T ss_pred EEEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHHHH
Confidence 10010000 01 00 111122222233322221 001123346999999999999998
Q ss_pred ---cCCCEEEEcCCCCCCCcCCC
Q psy10767 128 ---HDPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 128 ---~~p~illlDEPt~gLD~~~~ 147 (149)
.+|+++++||||++||+..+
T Consensus 184 ~~~~~~~illlDEPt~~ld~~~~ 206 (251)
T cd03273 184 LLFKPAPMYILDEVDAALDLSHT 206 (251)
T ss_pred hhccCCCEEEEeCCCcCCCHHHH
Confidence 57899999999999998654
No 378
>KOG0060|consensus
Probab=99.89 E-value=5.9e-23 Score=171.28 Aligned_cols=143 Identities=27% Similarity=0.352 Sum_probs=100.6
Q ss_pred ccceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCee-cceeeeeecCcccccCcccccCChhHHH
Q psy10767 3 DVSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSART-VRDIGYMPQVGLMRSGALLAEDSPSYLL 81 (149)
Q Consensus 3 ~~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~-~~~i~~~~q~~~~~~~~~~~~~~~~~~~ 81 (149)
+++++|+||.|..|.-+-|.||||||||+|+|++.|+.+..+|.+..-... ..++-|+||.|++..+.+- ++.++...
T Consensus 448 ~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~~~lfflPQrPYmt~GTLR-dQvIYP~~ 526 (659)
T KOG0060|consen 448 DLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGPKDLFFLPQRPYMTLGTLR-DQVIYPLK 526 (659)
T ss_pred ceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCCCceEEecCCCCccccchh-heeeccCc
Confidence 457889999999999999999999999999999999999899999874432 1459999999876655332 21111100
Q ss_pred hhccc--CchHHHHHHHhhhhHH--HHhhcCC----------CCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCC
Q psy10767 82 EYYNC--STLEDVFLYLCEQDQI--LFSLVGS----------ESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVL 146 (149)
Q Consensus 82 ~~~~~--~~~~~~~~~~~~~~~~--~~~~~~~----------~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~ 146 (149)
..... ...++.....++...+ +..+.+- .-||+||+||+++||.+.++|++-+|||.|+++|.++
T Consensus 527 ~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dv 605 (659)
T KOG0060|consen 527 AEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDV 605 (659)
T ss_pred cccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHHhcCCceEEeechhhhccHHH
Confidence 11111 1123334444443333 1111111 1369999999999999999999999999999999764
No 379
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.89 E-value=5.6e-25 Score=166.58 Aligned_cols=37 Identities=22% Similarity=0.266 Sum_probs=32.9
Q ss_pred CCChhHHHHHHHHHHHhc----CCCEEEEcCCCCCCCcCCC
Q psy10767 111 SAFGGQQRRVSFAVSLIH----DPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 111 ~~sgGqkqrv~iaral~~----~p~illlDEPt~gLD~~~~ 147 (149)
.+|+|||||++||||++. +|++++|||||+|||+..+
T Consensus 127 ~lS~G~~~r~~la~al~~~~~~~p~ililDEPt~gLD~~~~ 167 (212)
T cd03274 127 NLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNV 167 (212)
T ss_pred hcCHHHHHHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHH
Confidence 459999999999999974 5799999999999999764
No 380
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.89 E-value=1.3e-23 Score=158.94 Aligned_cols=128 Identities=19% Similarity=0.208 Sum_probs=76.1
Q ss_pred ecceEEEe-CCcEEEEECCCCCCHHHHHHHHhcC-ccCCcceEEEC--------CeecceeeeeecCcccccCcccccCC
Q psy10767 7 SSLNTVIF-GVTAYGLLGPSGCGKTTLLSCIVNR-LRLDHGSISLS--------ARTVRDIGYMPQVGLMRSGALLAEDS 76 (149)
Q Consensus 7 ~~i~~~~~-~g~~~~iiG~nGaGKSTLl~~i~g~-~~~~~G~i~~~--------g~~~~~i~~~~q~~~~~~~~~~~~~~ 76 (149)
++++|... +|++++|+||||||||||+++|++. +-+..+..... +.....|++++|...... ...+
T Consensus 18 ~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~--~~~r-- 93 (213)
T cd03279 18 QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGEDTAEVSFTFQLGGKKY--RVER-- 93 (213)
T ss_pred eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHhcCCCccEEEEEEEEECCeEE--EEEE--
Confidence 34566543 5889999999999999999999964 33443433321 111135788887631100 0000
Q ss_pred hhHHHhhcccCchHHHHHH-Hhh---hhHHHHhhcCCCCCChhHHHHHHHHHHHhc----------CCCEEEEcCCCCCC
Q psy10767 77 PSYLLEYYNCSTLEDVFLY-LCE---QDQILFSLVGSESAFGGQQRRVSFAVSLIH----------DPKILILDEPTVGL 142 (149)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~sgGqkqrv~iaral~~----------~p~illlDEPt~gL 142 (149)
...... +..... ... .......... .+|+|||||++||||++. +|+++||||||++|
T Consensus 94 ------~~gl~~-~~~~~~~~l~~g~l~~~l~~~~~--~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~l 164 (213)
T cd03279 94 ------SRGLDY-DQFTRIVLLPQGEFDRFLARPVS--TLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTL 164 (213)
T ss_pred ------ecCCCH-HHHHHhhhhhhcchHHHhcCCcc--ccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccC
Confidence 001111 111000 011 1111233333 459999999999999985 67899999999999
Q ss_pred CcCCC
Q psy10767 143 DPVLS 147 (149)
Q Consensus 143 D~~~~ 147 (149)
|+..+
T Consensus 165 D~~~~ 169 (213)
T cd03279 165 DPEAL 169 (213)
T ss_pred CHHHH
Confidence 98653
No 381
>KOG0062|consensus
Probab=99.89 E-value=2.1e-23 Score=172.07 Aligned_cols=132 Identities=28% Similarity=0.371 Sum_probs=76.2
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeecceee--eeecCcccccCcccccCChhHHH
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIG--YMPQVGLMRSGALLAEDSPSYLL 81 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~~~i~--~~~q~~~~~~~~~~~~~~~~~~~ 81 (149)
..|.+-++++.-|-.|||+|+||+|||||||+|+. |.|...... +.+. +++-.. ..+-.........
T Consensus 94 ~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~------~~v~~f~ve-qE~~g~~t~~~~----~~l~~D~~~~dfl 162 (582)
T KOG0062|consen 94 ILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN------GQVSGFHVE-QEVRGDDTEALQ----SVLESDTERLDFL 162 (582)
T ss_pred hhhcCCceeeecccccceeCCCCCcHHHHHHHHHh------cCcCccCch-hheeccchHHHh----hhhhccHHHHHHH
Confidence 35677788888888999999999999999999998 444433211 0010 011000 0000000111110
Q ss_pred hhc---ccC-chHHHHHHHhhhhHH--HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCC
Q psy10767 82 EYY---NCS-TLEDVFLYLCEQDQI--LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVL 146 (149)
Q Consensus 82 ~~~---~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~ 146 (149)
..- ... ..++....++.-++. ........++|||.|.|++|||||.++|||||||||||.||..+
T Consensus 163 ~~e~~l~~~~~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~a 233 (582)
T KOG0062|consen 163 AEEKELLAGLTLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVA 233 (582)
T ss_pred HhhhhhhccchHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecCCcccchhHH
Confidence 000 000 111222212222221 12223344569999999999999999999999999999999764
No 382
>KOG0065|consensus
Probab=99.89 E-value=8.8e-24 Score=188.54 Aligned_cols=137 Identities=29% Similarity=0.351 Sum_probs=102.6
Q ss_pred ceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccC--CcceEEECCeec------ceeeeeecCcccccCcccccCC
Q psy10767 5 SASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRL--DHGSISLSARTV------RDIGYMPQVGLMRSGALLAEDS 76 (149)
Q Consensus 5 ~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~--~~G~i~~~g~~~------~~i~~~~q~~~~~~~~~~~~~~ 76 (149)
.|+||+=-+++|..+||+|+|||||||||++|+|-..- .+|+|.++|.+. +.+||+.|++.+. +..+
T Consensus 806 LL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~-----~~~T 880 (1391)
T KOG0065|consen 806 LLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHS-----PELT 880 (1391)
T ss_pred hhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccceeecccccC-----cccc
Confidence 68899999999999999999999999999999997532 369999999876 4599999996554 4455
Q ss_pred hhHHHhhc---cc---CchH---HHHHHHhhhhHH---HHhhcCC--CCCChhHHHHHHHHHHHhcCC-CEEEEcCCCCC
Q psy10767 77 PSYLLEYY---NC---STLE---DVFLYLCEQDQI---LFSLVGS--ESAFGGQQRRVSFAVSLIHDP-KILILDEPTVG 141 (149)
Q Consensus 77 ~~~~~~~~---~~---~~~~---~~~~~~~~~~~~---~~~~~~~--~~~sgGqkqrv~iaral~~~p-~illlDEPt~g 141 (149)
+++-+.+. +. -..+ +..+++.+.+++ .+..++. ..||..||+|+.||--|+.+| .||+|||||||
T Consensus 881 VrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSG 960 (1391)
T KOG0065|consen 881 VRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVANPSSILFLDEPTSG 960 (1391)
T ss_pred hHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEecCCceeEEecCCCCC
Confidence 55555442 11 1111 233344433332 3334443 456899999999999999999 99999999999
Q ss_pred CCcCC
Q psy10767 142 LDPVL 146 (149)
Q Consensus 142 LD~~~ 146 (149)
||..+
T Consensus 961 LDsqa 965 (1391)
T KOG0065|consen 961 LDSQA 965 (1391)
T ss_pred ccHHH
Confidence 99764
No 383
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.88 E-value=2e-22 Score=167.43 Aligned_cols=140 Identities=24% Similarity=0.292 Sum_probs=101.0
Q ss_pred eecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec----------ceeeeeecCcccccCcccccC
Q psy10767 6 ASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV----------RDIGYMPQVGLMRSGALLAED 75 (149)
Q Consensus 6 ~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~----------~~i~~~~q~~~~~~~~~~~~~ 75 (149)
++|+||++.+|||+||.|-=|||+|-|+++|.|..++.+|+|.++|+.+ ..|+|+|.+.-- .-++...
T Consensus 275 ~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~--~Gl~l~~ 352 (500)
T COG1129 275 VRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKS--EGLVLDM 352 (500)
T ss_pred eeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcCCEeCCccccc--CcCcCCC
Confidence 7899999999999999999999999999999999999999999999876 248999986421 2223344
Q ss_pred ChhHHHhhc------cc---Cch--HHHHHHHhhhhHH--HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCC
Q psy10767 76 SPSYLLEYY------NC---STL--EDVFLYLCEQDQI--LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGL 142 (149)
Q Consensus 76 ~~~~~~~~~------~~---~~~--~~~~~~~~~~~~~--~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gL 142 (149)
++.+|.... .. ... ......+.+...+ .........||||.||||.|||.|..+|++|||||||-|+
T Consensus 353 sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGI 432 (500)
T COG1129 353 SIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGI 432 (500)
T ss_pred cHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHHHHHhcCCCEEEECCCCcCc
Confidence 444443221 11 111 1122222222222 1111223356999999999999999999999999999999
Q ss_pred CcCCC
Q psy10767 143 DPVLS 147 (149)
Q Consensus 143 D~~~~ 147 (149)
|...+
T Consensus 433 DVGAK 437 (500)
T COG1129 433 DVGAK 437 (500)
T ss_pred ccchH
Confidence 98765
No 384
>KOG0927|consensus
Probab=99.88 E-value=5.2e-23 Score=170.54 Aligned_cols=134 Identities=25% Similarity=0.303 Sum_probs=79.7
Q ss_pred ceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEE--CCeec-----ceeeeeecCcccccCcccccCCh
Q psy10767 5 SASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISL--SARTV-----RDIGYMPQVGLMRSGALLAEDSP 77 (149)
Q Consensus 5 ~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~--~g~~~-----~~i~~~~q~~~~~~~~~~~~~~~ 77 (149)
.++|.+|.++.|+.|||+|+|||||||+|++|+|-..|..-.+.+ ..+.+ +.+-++.+.... .....
T Consensus 90 l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~ps~~~av~~v~~~~~~------e~~rl 163 (614)
T KOG0927|consen 90 LIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPSEKQAVQAVVMETDH------ERKRL 163 (614)
T ss_pred eeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCCchHHHHHHHhhhhHH------HHHHH
Confidence 678999999999999999999999999999999999886544433 11111 011111110000 00000
Q ss_pred hHHHhhccc--C--------------------chHHHHHHHhhhhH----HHHhhcCCCCCChhHHHHHHHHHHHhcCCC
Q psy10767 78 SYLLEYYNC--S--------------------TLEDVFLYLCEQDQ----ILFSLVGSESAFGGQQRRVSFAVSLIHDPK 131 (149)
Q Consensus 78 ~~~~~~~~~--~--------------------~~~~~~~~~~~~~~----~~~~~~~~~~~sgGqkqrv~iaral~~~p~ 131 (149)
.+....+.. + ..+..+..++...+ +..+.. .++|||||.|++|||+|+.+|+
T Consensus 164 e~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~--~~~SgGwrmR~aLAr~Lf~kP~ 241 (614)
T KOG0927|consen 164 EYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKV--KDLSGGWRMRAALARALFQKPD 241 (614)
T ss_pred HHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHh--hccCchHHHHHHHHHHHhcCCC
Confidence 000000000 0 00000011110000 122222 3459999999999999999999
Q ss_pred EEEEcCCCCCCCcCC
Q psy10767 132 ILILDEPTVGLDPVL 146 (149)
Q Consensus 132 illlDEPt~gLD~~~ 146 (149)
+|+|||||+|||+++
T Consensus 242 LLLLDEPtnhLDleA 256 (614)
T KOG0927|consen 242 LLLLDEPTNHLDLEA 256 (614)
T ss_pred EEEecCCccCCCHHH
Confidence 999999999999865
No 385
>KOG0064|consensus
Probab=99.87 E-value=2.5e-22 Score=166.48 Aligned_cols=139 Identities=25% Similarity=0.361 Sum_probs=97.1
Q ss_pred ccceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeecceeeeeecCcccccCccccc----CChh
Q psy10767 3 DVSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAE----DSPS 78 (149)
Q Consensus 3 ~~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~~~i~~~~q~~~~~~~~~~~~----~~~~ 78 (149)
++.+..++|.|.+|...-|+||||||||+|+|+|.|+.+...|...+--. .+|-|+||.|++..+.+... ++..
T Consensus 495 ~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P~~--~~mFYIPQRPYms~gtlRDQIIYPdS~e 572 (728)
T KOG0064|consen 495 DVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPRP--NNIFYIPQRPYMSGGTLRDQIIYPDSSE 572 (728)
T ss_pred ceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeecCCC--cceEeccCCCccCcCcccceeecCCcHH
Confidence 46788999999999999999999999999999999999988887776432 35999999988764433221 1222
Q ss_pred HHHhhcccCchHHHHHHHhhhhHH---HHhhcC-------CCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCC
Q psy10767 79 YLLEYYNCSTLEDVFLYLCEQDQI---LFSLVG-------SESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVL 146 (149)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-------~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~ 146 (149)
+... .+.. ++....++..+.+ ..+..+ ..-+|||+|||+++||.+.++|++.+|||.||++.+++
T Consensus 573 ~~~~-kg~~--d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrPkyalLDEcTsAvsidv 647 (728)
T KOG0064|consen 573 QMKR-KGYT--DQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKYALLDECTSAVSIDV 647 (728)
T ss_pred HHHh-cCCC--HHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhcCcchhhhhhhhcccccch
Confidence 2111 1111 1212222222222 111110 11258999999999999999999999999999988765
No 386
>KOG0066|consensus
Probab=99.87 E-value=1.6e-22 Score=165.22 Aligned_cols=136 Identities=28% Similarity=0.356 Sum_probs=99.5
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeecceeeeeecCcccccCcccccCChhHHHh-
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAEDSPSYLLE- 82 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~- 82 (149)
|.+++++|-|+=-+.+||+||||.||||||++|.|-+.|+.|+.+-+.. -.||++.|... ..+..+.+..+++.
T Consensus 601 pLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnhr--L~iG~FdQh~~---E~L~~Eetp~EyLqr 675 (807)
T KOG0066|consen 601 PLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNHR--LRIGWFDQHAN---EALNGEETPVEYLQR 675 (807)
T ss_pred chhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhccce--eeeechhhhhH---HhhccccCHHHHHHH
Confidence 5678888888888899999999999999999999999999999987654 36999888632 34445555554443
Q ss_pred hcccCchHHHHHHHhhhhHHH-H-hhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCC
Q psy10767 83 YYNCSTLEDVFLYLCEQDQIL-F-SLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVL 146 (149)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~ 146 (149)
.++.. .+.+...+..+++. + -.+....||||||.||++|-..+..|+||||||||++||..+
T Consensus 676 ~FNlp--yq~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDEPTNNLDIES 739 (807)
T KOG0066|consen 676 KFNLP--YQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEPTNNLDIES 739 (807)
T ss_pred hcCCC--hHHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecCCCCCcchhh
Confidence 23322 12222233333331 1 112233569999999999999999999999999999999865
No 387
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.86 E-value=3.6e-22 Score=149.79 Aligned_cols=125 Identities=17% Similarity=0.152 Sum_probs=76.7
Q ss_pred eecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCc-----ce----EEECCeecceeeeeecCcccccCcccccCC
Q psy10767 6 ASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDH-----GS----ISLSARTVRDIGYMPQVGLMRSGALLAEDS 76 (149)
Q Consensus 6 ~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~-----G~----i~~~g~~~~~i~~~~q~~~~~~~~~~~~~~ 76 (149)
++++++.+.+| +.+|+||||||||||+.+|.-....+. |. +.-.|.+...+.+.+++..... . .
T Consensus 12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~-----~-~ 84 (198)
T cd03276 12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKASDTNRGSSLKDLIKDGESSAKITVTLKNQGLDA-----N-P 84 (198)
T ss_pred eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcccccccccHHHHhhCCCCeEEEEEEEEcCCccC-----C-c
Confidence 45677777776 779999999999999999974332221 11 1111222234666776532211 0 0
Q ss_pred hhHHHhhcccCchHHHHHHHhhhhHHHHhhcCCCCCChhHHHHHHHHHHH----hcCCCEEEEcCCCCCCCcCCC
Q psy10767 77 PSYLLEYYNCSTLEDVFLYLCEQDQILFSLVGSESAFGGQQRRVSFAVSL----IHDPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgGqkqrv~iaral----~~~p~illlDEPt~gLD~~~~ 147 (149)
.. ...+..+.++++.......... .+|+|||||++||+|+ +.+|+++||||||++||+..+
T Consensus 85 ------~~--~~~~~~~~~~l~~~~~~~~~~~--~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~ 149 (198)
T cd03276 85 ------LC--VLSQDMARSFLTSNKAAVRDVK--TLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNR 149 (198)
T ss_pred ------CC--HHHHHHHHHHhccccccCCccc--ccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHH
Confidence 00 0011222233322111223333 4599999999999999 589999999999999998754
No 388
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.86 E-value=5.6e-23 Score=150.61 Aligned_cols=133 Identities=23% Similarity=0.288 Sum_probs=92.5
Q ss_pred eecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeecc---------eeeeeecCcccccCcccccCC
Q psy10767 6 ASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVR---------DIGYMPQVGLMRSGALLAEDS 76 (149)
Q Consensus 6 ~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~~---------~i~~~~q~~~~~~~~~~~~~~ 76 (149)
+-.+|..+..||+.=+|||||||||||+..++|+. |-+|+|.++|.++. .-+|..|. +.....+.
T Consensus 15 L~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~-~~sGsi~~~G~~l~~~~~~eLArhRAYLsQq-----q~p~f~mp 88 (248)
T COG4138 15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARHRAYLSQQ-----QTPPFAMP 88 (248)
T ss_pred ccccccccccceEEEEECCCCccHHHHHHHHhCCC-CCCceEEECCcchhHHhHhHHHHHHHHHhhc-----cCCcchhh
Confidence 44678899999999999999999999999999988 67999999998862 34566665 22222334
Q ss_pred hhHHHhhcccC-chHHHHHHHhhhhHH---HHhhcCCCCCChhHHHHHHHHHHHhc-----C--CCEEEEcCCCCCCCcC
Q psy10767 77 PSYLLEYYNCS-TLEDVFLYLCEQDQI---LFSLVGSESAFGGQQRRVSFAVSLIH-----D--PKILILDEPTVGLDPV 145 (149)
Q Consensus 77 ~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~~~~~~~sgGqkqrv~iaral~~-----~--p~illlDEPt~gLD~~ 145 (149)
+..+...+... .......++.....+ +.+....+ ||||-|||-+|..++. | .+++++|||.++||..
T Consensus 89 V~~YL~L~qP~~~~a~~i~~i~~~L~l~DKL~Rs~~qL--SGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvA 166 (248)
T COG4138 89 VWHYLTLHQPDKTRTELLNDVAGALALDDKLGRSTNQL--SGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVA 166 (248)
T ss_pred hhhhhhhcCchHHHHHHHHHHHhhhcccchhhhhhhhc--CcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHH
Confidence 44444433211 112223333333332 33334444 9999999999988764 3 3799999999999986
Q ss_pred C
Q psy10767 146 L 146 (149)
Q Consensus 146 ~ 146 (149)
.
T Consensus 167 Q 167 (248)
T COG4138 167 Q 167 (248)
T ss_pred H
Confidence 4
No 389
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.84 E-value=1.8e-21 Score=150.18 Aligned_cols=37 Identities=22% Similarity=0.333 Sum_probs=33.2
Q ss_pred CCChhHHHHHHHHHHHhcC----CCEEEEcCCCCCCCcCCC
Q psy10767 111 SAFGGQQRRVSFAVSLIHD----PKILILDEPTVGLDPVLS 147 (149)
Q Consensus 111 ~~sgGqkqrv~iaral~~~----p~illlDEPt~gLD~~~~ 147 (149)
.+|+|||||++|||+++.+ |+++||||||++||+..+
T Consensus 155 ~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~ 195 (247)
T cd03275 155 NLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNV 195 (247)
T ss_pred HcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHH
Confidence 4599999999999999864 899999999999998643
No 390
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.80 E-value=2e-19 Score=166.30 Aligned_cols=38 Identities=37% Similarity=0.616 Sum_probs=34.3
Q ss_pred CCCChhHHHHHHHHHHHh---cCCCEEEEcCCCCCCCcCCC
Q psy10767 110 ESAFGGQQRRVSFAVSLI---HDPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 110 ~~~sgGqkqrv~iaral~---~~p~illlDEPt~gLD~~~~ 147 (149)
..+|||||||++|||+|+ .+|+++||||||+|||+..+
T Consensus 808 ~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~ 848 (1809)
T PRK00635 808 SSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDI 848 (1809)
T ss_pred ccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHH
Confidence 346999999999999998 69999999999999998754
No 391
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.80 E-value=6.1e-20 Score=138.28 Aligned_cols=136 Identities=18% Similarity=0.236 Sum_probs=93.1
Q ss_pred ceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccC----CcceEEECCeec-------------ceeeeeecCcccc
Q psy10767 5 SASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRL----DHGSISLSARTV-------------RDIGYMPQVGLMR 67 (149)
Q Consensus 5 ~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~----~~G~i~~~g~~~-------------~~i~~~~q~~~~~ 67 (149)
+++++|+++++||+-|++|+||||||-..++|+|..+- +.....+++.++ ++|+++||++.
T Consensus 22 ~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RRk~ig~~isMIFQeP~-- 99 (330)
T COG4170 22 AVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQ-- 99 (330)
T ss_pred eeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhhhhhccchhhhhcCch--
Confidence 68999999999999999999999999999999999753 244555655543 35889999852
Q ss_pred cCcccccC--Chh----HHHhhc---c-----cCchHHHHHHHhhhhHH------HHhhcCCCCCChhHHHHHHHHHHHh
Q psy10767 68 SGALLAED--SPS----YLLEYY---N-----CSTLEDVFLYLCEQDQI------LFSLVGSESAFGGQQRRVSFAVSLI 127 (149)
Q Consensus 68 ~~~~~~~~--~~~----~~~~~~---~-----~~~~~~~~~~~~~~~~~------~~~~~~~~~~sgGqkqrv~iaral~ 127 (149)
.+... .+. ++.... + ....++++.+++..+++ ...+.. ++--||-|+|.||.|++
T Consensus 100 ---sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~--ElTeGE~QKVMIA~A~A 174 (330)
T COG4170 100 ---SCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPY--ELTEGECQKVMIAIALA 174 (330)
T ss_pred ---hhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcc--hhccCcceeeeeehhhc
Confidence 22111 010 000000 0 01123344444444433 233333 33589999999999999
Q ss_pred cCCCEEEEcCCCCCCCcCCC
Q psy10767 128 HDPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 128 ~~p~illlDEPt~gLD~~~~ 147 (149)
.+|++||.||||+++++..+
T Consensus 175 nqPrLLIADEPTN~~e~~Tq 194 (330)
T COG4170 175 NQPRLLIADEPTNSMEPTTQ 194 (330)
T ss_pred cCCceEeccCCCcccCccHH
Confidence 99999999999999999754
No 392
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.80 E-value=2.3e-19 Score=159.39 Aligned_cols=38 Identities=37% Similarity=0.496 Sum_probs=34.8
Q ss_pred CCCChhHHHHHHHHHHHhcCC---CEEEEcCCCCCCCcCCC
Q psy10767 110 ESAFGGQQRRVSFAVSLIHDP---KILILDEPTVGLDPVLS 147 (149)
Q Consensus 110 ~~~sgGqkqrv~iaral~~~p---~illlDEPt~gLD~~~~ 147 (149)
..||||||||++||++|+.+| +++||||||+|||+..+
T Consensus 829 ~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~ 869 (943)
T PRK00349 829 TTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDI 869 (943)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHH
Confidence 346999999999999999999 99999999999998754
No 393
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.79 E-value=1.2e-19 Score=136.06 Aligned_cols=101 Identities=16% Similarity=0.141 Sum_probs=68.1
Q ss_pred eecceEEEeCCc-EEEEECCCCCCHHHHHHHHh--------cCccCCcceEEECCeecceeeeeecCcccccCcccccCC
Q psy10767 6 ASSLNTVIFGVT-AYGLLGPSGCGKTTLLSCIV--------NRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAEDS 76 (149)
Q Consensus 6 ~~~i~~~~~~g~-~~~iiG~nGaGKSTLl~~i~--------g~~~~~~G~i~~~g~~~~~i~~~~q~~~~~~~~~~~~~~ 76 (149)
+.++||++.+|+ +++|+||||||||||+|+|+ |.+-|....+ .++|+.|. +...
T Consensus 17 ~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~--------~~~~~~~~--------~~~l- 79 (200)
T cd03280 17 VVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGS--------SLPVFENI--------FADI- 79 (200)
T ss_pred eEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccccc--------cCcCccEE--------EEec-
Confidence 447899999995 79999999999999999998 5444432111 13333332 0000
Q ss_pred hhHHHhhcccCchHHHHHHHhhhhHHHHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCCC
Q psy10767 77 PSYLLEYYNCSTLEDVFLYLCEQDQILFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~~ 147 (149)
. ..+. ... ....+|+||||++.|++++ .+|+++++|||++++|+..+
T Consensus 80 ----------g-~~~~----------l~~--~~s~fs~g~~~~~~i~~~~-~~p~llllDEp~~glD~~~~ 126 (200)
T cd03280 80 ----------G-DEQS----------IEQ--SLSTFSSHMKNIARILQHA-DPDSLVLLDELGSGTDPVEG 126 (200)
T ss_pred ----------C-chhh----------hhc--CcchHHHHHHHHHHHHHhC-CCCcEEEEcCCCCCCCHHHH
Confidence 0 0000 001 1112389999999999884 89999999999999998653
No 394
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.79 E-value=5.2e-19 Score=145.60 Aligned_cols=141 Identities=22% Similarity=0.266 Sum_probs=104.6
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec-----------ceeeeeecCcccccCccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV-----------RDIGYMPQVGLMRSGALL 72 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~-----------~~i~~~~q~~~~~~~~~~ 72 (149)
..++++||++..|||+||.|-.|-|-+-|+.+|+|+.++.+|+|.++|+++ ..++|+|.+..- ..+.
T Consensus 272 ~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~~G~~~VPedR~~--~Glv 349 (501)
T COG3845 272 TAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHG--HGLV 349 (501)
T ss_pred ceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHHhcCCccCChhhcc--Cccc
Confidence 468999999999999999999999999999999999999999999999885 248999987421 1233
Q ss_pred ccCChhHHHhhccc-------------CchHHHHHHHhhhhHHH--HhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcC
Q psy10767 73 AEDSPSYLLEYYNC-------------STLEDVFLYLCEQDQIL--FSLVGSESAFGGQQRRVSFAVSLIHDPKILILDE 137 (149)
Q Consensus 73 ~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~--~~~~~~~~~sgGqkqrv~iaral~~~p~illlDE 137 (149)
...+..+|...... .........+.+.+++. .......+||||++||+-+||-|.++|++||+.+
T Consensus 350 ~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGNqQK~IlaREl~~~p~lLI~~q 429 (501)
T COG3845 350 LDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQKLILARELARRPDLLIAAQ 429 (501)
T ss_pred cCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCcceehhhhhhhhccCCCEEEEcC
Confidence 44555555433211 11122333344444432 1122234679999999999999999999999999
Q ss_pred CCCCCCcCC
Q psy10767 138 PTVGLDPVL 146 (149)
Q Consensus 138 Pt~gLD~~~ 146 (149)
||-|||...
T Consensus 430 PTrGLDvgA 438 (501)
T COG3845 430 PTRGLDVGA 438 (501)
T ss_pred CCccccHHH
Confidence 999999753
No 395
>KOG0062|consensus
Probab=99.79 E-value=1.6e-19 Score=149.17 Aligned_cols=136 Identities=24% Similarity=0.272 Sum_probs=93.6
Q ss_pred ceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeecceeeeeecCcccccCcccccCChhHHHhhc
Q psy10767 5 SASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAEDSPSYLLEYY 84 (149)
Q Consensus 5 ~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~ 84 (149)
.+.++++.++--+..+++|+||+||||+++++.|-..|.+|.+.+.++ .+|+|..|...-....... .+.+....+
T Consensus 379 ~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~r--~ri~~f~Qhhvd~l~~~v~--~vd~~~~~~ 454 (582)
T KOG0062|consen 379 WRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHPR--LRIKYFAQHHVDFLDKNVN--AVDFMEKSF 454 (582)
T ss_pred hhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeeccc--ceecchhHhhhhHHHHHhH--HHHHHHHhC
Confidence 456677777777789999999999999999999999999999998875 4799999863211000000 001111111
Q ss_pred -ccCchHHHHHHHhhhhHH--HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCC
Q psy10767 85 -NCSTLEDVFLYLCEQDQI--LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVL 146 (149)
Q Consensus 85 -~~~~~~~~~~~~~~~~~~--~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~ 146 (149)
+. .++.+..-+..+++ ........+||||||-||++|.....+|-+|+||||||+||.++
T Consensus 455 pG~--~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD~ds 517 (582)
T KOG0062|consen 455 PGK--TEEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDS 517 (582)
T ss_pred CCC--CHHHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcCCCcEEEecCCCccccHHH
Confidence 11 23333333444443 11122234569999999999999999999999999999999764
No 396
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.78 E-value=2.1e-19 Score=147.21 Aligned_cols=131 Identities=23% Similarity=0.267 Sum_probs=76.8
Q ss_pred EeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEE-----------CCeecc---------e--eeeeecCcccccCc
Q psy10767 13 IFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISL-----------SARTVR---------D--IGYMPQVGLMRSGA 70 (149)
Q Consensus 13 ~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~-----------~g~~~~---------~--i~~~~q~~~~~~~~ 70 (149)
..+|.++||+|+||-||||.+|+|+|.+.|+=|+..= .|..++ + +..-+|--.+- +.
T Consensus 97 pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd~i-Pk 175 (591)
T COG1245 97 PRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDLI-PK 175 (591)
T ss_pred CCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCCCCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHHHH-HH
Confidence 3689999999999999999999999999998664321 111100 0 11111100000 00
Q ss_pred ccccCChhHHHhhcccCchHHHHHHHhhhhHHHHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCCC
Q psy10767 71 LLAEDSPSYLLEYYNCSTLEDVFLYLCEQDQILFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~~ 147 (149)
.+ .-++.+.+.........+...+.+...+.+++.+..+ ||||-||++||.+++++++++++|||++-||...|
T Consensus 176 ~~-KG~v~elLk~~de~g~~devve~l~L~nvl~r~v~~L--SGGELQr~aIaa~l~rdADvY~FDEpsSyLDi~qR 249 (591)
T COG1245 176 VV-KGKVGELLKKVDERGKFDEVVERLGLENVLDRDVSEL--SGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQR 249 (591)
T ss_pred Hh-cchHHHHHHhhhhcCcHHHHHHHhcchhhhhhhhhhc--CchHHHHHHHHHHHhccCCEEEEcCCcccccHHHH
Confidence 00 0011111111100001111111122223355555555 99999999999999999999999999999998765
No 397
>KOG2355|consensus
Probab=99.78 E-value=5.2e-19 Score=132.64 Aligned_cols=142 Identities=25% Similarity=0.266 Sum_probs=92.3
Q ss_pred ccceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec-c--------eeeeeecCcccc---cCc
Q psy10767 3 DVSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV-R--------DIGYMPQVGLMR---SGA 70 (149)
Q Consensus 3 ~~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~-~--------~i~~~~q~~~~~---~~~ 70 (149)
+|++.|+|++++.|+..-++|.|||||||||++|+|-.-.-.|-|.+.|.+. . +..|.-.+.... ...
T Consensus 27 dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sgdl~YLGgeW~~~~~~age 106 (291)
T KOG2355|consen 27 DPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSGDLSYLGGEWSKTVGIAGE 106 (291)
T ss_pred CceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccccCceeEeccccccccccccc
Confidence 6889999999999999999999999999999999999877779999988653 1 133333221100 000
Q ss_pred ccc--cCChhHHHhhcccCchHHHHHHHhhhhHH-HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCCC
Q psy10767 71 LLA--EDSPSYLLEYYNCSTLEDVFLYLCEQDQI-LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 71 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~~ 147 (149)
... ...+.....-..-.. .++.+.+.+..++ +..+.+.. |-|||+||.|++.|++.-++|+|||-|--||...|
T Consensus 107 vplq~D~sae~mifgV~g~d-p~Rre~LI~iLDIdl~WRmHkv--SDGqrRRVQicMGLL~PfkVLLLDEVTVDLDVlAR 183 (291)
T KOG2355|consen 107 VPLQGDISAEHMIFGVGGDD-PERREKLIDILDIDLRWRMHKV--SDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLAR 183 (291)
T ss_pred ccccccccHHHHHhhccCCC-hhHhhhhhhheeccceEEEeec--cccchhhhHHHHhcccceeEEEeeeeEeehHHHHH
Confidence 000 001111100001111 1222233333333 22333333 89999999999999999999999999999998765
No 398
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.76 E-value=2.4e-18 Score=152.72 Aligned_cols=37 Identities=35% Similarity=0.490 Sum_probs=33.7
Q ss_pred CCChhHHHHHHHHHHHhc---CCCEEEEcCCCCCCCcCCC
Q psy10767 111 SAFGGQQRRVSFAVSLIH---DPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 111 ~~sgGqkqrv~iaral~~---~p~illlDEPt~gLD~~~~ 147 (149)
.+||||+||++||++|+. +|+++||||||+|||+..+
T Consensus 828 tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~ 867 (924)
T TIGR00630 828 TLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDI 867 (924)
T ss_pred cCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHH
Confidence 469999999999999997 5999999999999998754
No 399
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.73 E-value=5.6e-18 Score=128.43 Aligned_cols=37 Identities=22% Similarity=0.348 Sum_probs=31.8
Q ss_pred CCChhHHHHHHHHHHH----hcCCCEEEEcCCCCCCCcCCC
Q psy10767 111 SAFGGQQRRVSFAVSL----IHDPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 111 ~~sgGqkqrv~iaral----~~~p~illlDEPt~gLD~~~~ 147 (149)
.+|+|||||+.+++++ +.+|+++|+||||++||+..+
T Consensus 126 ~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~ 166 (213)
T cd03277 126 HQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNE 166 (213)
T ss_pred hccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHH
Confidence 4699999998877554 589999999999999998754
No 400
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.72 E-value=1.2e-17 Score=135.74 Aligned_cols=135 Identities=24% Similarity=0.262 Sum_probs=89.3
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcC--------ccCCcceEEECCeecceeeeeecCcccccCcccccC
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNR--------LRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAED 75 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~--------~~~~~G~i~~~g~~~~~i~~~~q~~~~~~~~~~~~~ 75 (149)
.+++|+||.+++|++++|+|+|||||||++++|+|. ++|++|.|.+--..+ -+.+|.+. .+.+ ...
T Consensus 397 yvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~--~a~iPge~---Ep~f-~~~ 470 (593)
T COG2401 397 YVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTV--SALIPGEY---EPEF-GEV 470 (593)
T ss_pred eeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccch--hhccCccc---cccc-Cch
Confidence 478999999999999999999999999999999987 678889888743221 12333321 0111 122
Q ss_pred ChhHHHhhcccCchHHHHHHHhhhhHH---HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCC
Q psy10767 76 SPSYLLEYYNCSTLEDVFLYLCEQDQI---LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVL 146 (149)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~ 146 (149)
++-+.. .....+-..+..++...++ ........++|.|||.|+.||+++...|.+++.||-.++||+.+
T Consensus 471 tilehl--~s~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~T 542 (593)
T COG2401 471 TILEHL--RSKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELT 542 (593)
T ss_pred hHHHHH--hhccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHH
Confidence 222211 1111122222233333332 11122233459999999999999999999999999999999864
No 401
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.72 E-value=8.6e-18 Score=122.16 Aligned_cols=99 Identities=24% Similarity=0.275 Sum_probs=66.5
Q ss_pred ceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeecceee-eeecCcccccCcccccCChhHHHhhcccC
Q psy10767 9 LNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIG-YMPQVGLMRSGALLAEDSPSYLLEYYNCS 87 (149)
Q Consensus 9 i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~~~i~-~~~q~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (149)
.++.+.++.+..|+|||||||||+++.+....-..+|.+..... . +.+ +++... ... .
T Consensus 14 ~~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~~-~-~~g~~~~~~~------------~~~---i---- 72 (162)
T cd03227 14 NDVTFGEGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRSG-V-KAGCIVAAVS------------AEL---I---- 72 (162)
T ss_pred cEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccCc-c-cCCCcceeeE------------EEE---e----
Confidence 34555566699999999999999999988776655554443111 0 111 111110 000 0
Q ss_pred chHHHHHHHhhhhHHHHhhcCCCCCChhHHHHHHHHHHHhc----CCCEEEEcCCCCCCCcCCC
Q psy10767 88 TLEDVFLYLCEQDQILFSLVGSESAFGGQQRRVSFAVSLIH----DPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~sgGqkqrv~iaral~~----~p~illlDEPt~gLD~~~~ 147 (149)
.....+|+||+||++||+++.. +|+++++|||++|+|+..+
T Consensus 73 -------------------~~~~~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~ 117 (162)
T cd03227 73 -------------------FTRLQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDG 117 (162)
T ss_pred -------------------hheeeccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHH
Confidence 0000148999999999999987 7899999999999999754
No 402
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.71 E-value=3.4e-17 Score=121.02 Aligned_cols=36 Identities=25% Similarity=0.398 Sum_probs=32.8
Q ss_pred CChhHHHHHHHHHHHh----cCCCEEEEcCCCCCCCcCCC
Q psy10767 112 AFGGQQRRVSFAVSLI----HDPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 112 ~sgGqkqrv~iaral~----~~p~illlDEPt~gLD~~~~ 147 (149)
+|+|||||++|||+++ .+|+++++|||+++||+..+
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~ 134 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNR 134 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHH
Confidence 4999999999999996 69999999999999998653
No 403
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.70 E-value=1.2e-17 Score=125.50 Aligned_cols=36 Identities=19% Similarity=0.184 Sum_probs=29.4
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCcc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLR 41 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~ 41 (149)
++.+++++. .|++++|+||||||||||+|+|+|...
T Consensus 15 ~v~n~i~l~--~g~~~~ltGpNg~GKSTllr~i~~~~~ 50 (199)
T cd03283 15 RVANDIDME--KKNGILITGSNMSGKSTFLRTIGVNVI 50 (199)
T ss_pred eecceEEEc--CCcEEEEECCCCCChHHHHHHHHHHHH
Confidence 345566555 479999999999999999999998653
No 404
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.68 E-value=1.6e-17 Score=124.57 Aligned_cols=106 Identities=14% Similarity=0.125 Sum_probs=63.6
Q ss_pred ecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCc-cCCcceEEECCeecceeeeeecCcccccCcccccCChhHHHhhcc
Q psy10767 7 SSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRL-RLDHGSISLSARTVRDIGYMPQVGLMRSGALLAEDSPSYLLEYYN 85 (149)
Q Consensus 7 ~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~-~~~~G~i~~~g~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~ 85 (149)
-..++++.+|++++|+||||||||||+++|++.. ....|..... .. ..+++..|. +...
T Consensus 20 ~~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~~-~~-~~i~~~dqi--------~~~~---------- 79 (202)
T cd03243 20 VPNDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVPA-ES-ASIPLVDRI--------FTRI---------- 79 (202)
T ss_pred EeeeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCccc-cc-cccCCcCEE--------EEEe----------
Confidence 4567788899999999999999999999999543 2333332211 10 123322221 0000
Q ss_pred cCchHHHHHHHhhhhHHHHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCCC
Q psy10767 86 CSTLEDVFLYLCEQDQILFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~~ 147 (149)
...+. . . .....+ .++.|++..+.+++.+|+++|+||||+|+|+..+
T Consensus 80 -~~~d~-i----------~--~~~s~~-~~e~~~l~~i~~~~~~~~llllDEp~~gld~~~~ 126 (202)
T cd03243 80 -GAEDS-I----------S--DGRSTF-MAELLELKEILSLATPRSLVLIDELGRGTSTAEG 126 (202)
T ss_pred -cCccc-c----------c--CCceeH-HHHHHHHHHHHHhccCCeEEEEecCCCCCCHHHH
Confidence 00000 0 0 000111 3444557777888999999999999999999643
No 405
>KOG0066|consensus
Probab=99.68 E-value=1.9e-17 Score=135.79 Aligned_cols=36 Identities=44% Similarity=0.590 Sum_probs=33.5
Q ss_pred CCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCC
Q psy10767 111 SAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVL 146 (149)
Q Consensus 111 ~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~ 146 (149)
.+|||.|.||++||||..+|.+|+|||||++||--.
T Consensus 412 kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNA 447 (807)
T KOG0066|consen 412 KFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNA 447 (807)
T ss_pred ccCCceeeehhHHHHHhcCceeeeecCCccccccce
Confidence 459999999999999999999999999999999754
No 406
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.67 E-value=2.5e-17 Score=125.58 Aligned_cols=107 Identities=18% Similarity=0.097 Sum_probs=71.6
Q ss_pred ccceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeecceee-eeecCcccccCcccccCChhHHH
Q psy10767 3 DVSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIG-YMPQVGLMRSGALLAEDSPSYLL 81 (149)
Q Consensus 3 ~~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~~~i~-~~~q~~~~~~~~~~~~~~~~~~~ 81 (149)
+++.+|++++..++++++|.||||+||||++++|+-.. + +..+| |+|.+. ..... .+
T Consensus 17 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~--------~----la~~g~~vpa~~-----~~~~~---~~-- 74 (222)
T cd03285 17 AFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVIV--------L----MAQIGCFVPCDS-----ADIPI---VD-- 74 (222)
T ss_pred CeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHHH--------H----HHHhCCCcCccc-----EEEec---cc--
Confidence 46789999999999999999999999999999998210 0 11233 444431 00000 00
Q ss_pred hhcccCchHHHHHHHhhhhHHHHhhcCCCCCChhHHHHHHHHHHH--hcCCCEEEEcCC---CCCCCcCC
Q psy10767 82 EYYNCSTLEDVFLYLCEQDQILFSLVGSESAFGGQQRRVSFAVSL--IHDPKILILDEP---TVGLDPVL 146 (149)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgGqkqrv~iaral--~~~p~illlDEP---t~gLD~~~ 146 (149)
.++...+..... ...+|.|++|+..+++++ +.+|+++||||| |+++|+..
T Consensus 75 -------------~il~~~~l~d~~--~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~ 129 (222)
T cd03285 75 -------------CILARVGASDSQ--LKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYDGFG 129 (222)
T ss_pred -------------eeEeeeccccch--hcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHH
Confidence 000000000011 123489999999999999 899999999999 99999864
No 407
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.65 E-value=1.4e-15 Score=118.91 Aligned_cols=36 Identities=31% Similarity=0.388 Sum_probs=32.8
Q ss_pred CChhHHHHHHHHHHHh---------cCCCEEEEcCCCCCCCcCCC
Q psy10767 112 AFGGQQRRVSFAVSLI---------HDPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 112 ~sgGqkqrv~iaral~---------~~p~illlDEPt~gLD~~~~ 147 (149)
+|+||||+++|||+|+ .+|+++++||||++||+..+
T Consensus 184 lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~ 228 (270)
T cd03242 184 GSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQ 228 (270)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHH
Confidence 4899999999999985 79999999999999999754
No 408
>KOG0065|consensus
Probab=99.65 E-value=2e-16 Score=142.03 Aligned_cols=142 Identities=25% Similarity=0.359 Sum_probs=100.4
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCC---cceEEECCeec------ceeeeeecCcccccCccccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLD---HGSISLSARTV------RDIGYMPQVGLMRSGALLAE 74 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~---~G~i~~~g~~~------~~i~~~~q~~~~~~~~~~~~ 74 (149)
.+++|++.-+++|+.+-++||.|||||||+++++|-.+.. .|+|.++|.+. +.++|.+|.+.+... +..+
T Consensus 129 ~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~-lTVr 207 (1391)
T KOG0065|consen 129 QILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPE-LTVR 207 (1391)
T ss_pred eeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccce-eEEe
Confidence 3789999999999999999999999999999999987542 57999999876 358899998655432 2333
Q ss_pred CChhHHHhhc----ccCch--HH----HHHHHhhhhHH---HHhhcCC---CCCChhHHHHHHHHHHHhcCCCEEEEcCC
Q psy10767 75 DSPSYLLEYY----NCSTL--ED----VFLYLCEQDQI---LFSLVGS---ESAFGGQQRRVSFAVSLIHDPKILILDEP 138 (149)
Q Consensus 75 ~~~~~~~~~~----~~~~~--~~----~~~~~~~~~~~---~~~~~~~---~~~sgGqkqrv~iaral~~~p~illlDEP 138 (149)
++.....+.. +.+.. .+ ..+.+++..++ .+..++. ...|||||+||.+|-+++.+++++.+||+
T Consensus 208 eTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De~ 287 (1391)
T KOG0065|consen 208 ETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEI 287 (1391)
T ss_pred ehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeecc
Confidence 3333332221 11111 11 12233333333 2222322 24589999999999999999999999999
Q ss_pred CCCCCcCC
Q psy10767 139 TVGLDPVL 146 (149)
Q Consensus 139 t~gLD~~~ 146 (149)
|.|||...
T Consensus 288 t~GLDSsT 295 (1391)
T KOG0065|consen 288 TRGLDSST 295 (1391)
T ss_pred cccccHHH
Confidence 99999754
No 409
>KOG0063|consensus
Probab=99.63 E-value=9.1e-16 Score=125.25 Aligned_cols=132 Identities=24% Similarity=0.313 Sum_probs=86.5
Q ss_pred ceecceEEEeCCc-----EEEEECCCCCCHHHHHHHHhcCccCCcc-eEEECCeecceeeeeecCcccccCcccccCChh
Q psy10767 5 SASSLNTVIFGVT-----AYGLLGPSGCGKTTLLSCIVNRLRLDHG-SISLSARTVRDIGYMPQVGLMRSGALLAEDSPS 78 (149)
Q Consensus 5 ~~~~i~~~~~~g~-----~~~iiG~nGaGKSTLl~~i~g~~~~~~G-~i~~~g~~~~~i~~~~q~~~~~~~~~~~~~~~~ 78 (149)
.+.++.+.|+.|| ++..+|+||.|||||+++++|.++|++| +|-. -+++|-||.- ..-.+-+++
T Consensus 351 ~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~e~p~-----lnVSykpqki-----spK~~~tvR 420 (592)
T KOG0063|consen 351 TVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGGEIPV-----LNVSYKPQKI-----SPKREGTVR 420 (592)
T ss_pred eeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccCcccc-----cceecccccc-----CccccchHH
Confidence 3456777777776 6899999999999999999999999875 3332 3577777751 111111222
Q ss_pred HHHhhc--ccCchHHHHHHHhhhh---HHHHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCCCC
Q psy10767 79 YLLEYY--NCSTLEDVFLYLCEQD---QILFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLSF 148 (149)
Q Consensus 79 ~~~~~~--~~~~~~~~~~~~~~~~---~~~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~~~ 148 (149)
..+... .............+-+ ......+..+ ||||.|||++|.++-..+++++.|||.+-||.++|.
T Consensus 421 ~ll~~kIr~ay~~pqF~~dvmkpL~ie~i~dqevq~l--SggelQRval~KOGGKpAdvYliDEpsAylDSeQRi 493 (592)
T KOG0063|consen 421 QLLHTKIRDAYMHPQFVNDVMKPLQIENIIDQEVQGL--SGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRI 493 (592)
T ss_pred HHHHHHhHhhhcCHHHHHhhhhhhhHHHHHhHHhhcC--CchhhHHHHHHHhcCCCCceEEecCchhhcChHHHH
Confidence 222110 0000111111222211 2234444444 999999999999999999999999999999998774
No 410
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.62 E-value=5e-16 Score=121.75 Aligned_cols=36 Identities=31% Similarity=0.434 Sum_probs=32.3
Q ss_pred CChhHHHHHHHHHHHhc----CCCEEEEcCCCCCCCcCCC
Q psy10767 112 AFGGQQRRVSFAVSLIH----DPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 112 ~sgGqkqrv~iaral~~----~p~illlDEPt~gLD~~~~ 147 (149)
+|+||+||+++|++++. +|+++++||||++||+..+
T Consensus 171 lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~ 210 (276)
T cd03241 171 ASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVA 210 (276)
T ss_pred cChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHH
Confidence 69999999999997654 9999999999999998754
No 411
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.61 E-value=1e-15 Score=115.46 Aligned_cols=109 Identities=15% Similarity=0.127 Sum_probs=67.9
Q ss_pred ccceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeecceee-eeecCcccccCcccccCChhHHH
Q psy10767 3 DVSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIG-YMPQVGLMRSGALLAEDSPSYLL 81 (149)
Q Consensus 3 ~~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~~~i~-~~~q~~~~~~~~~~~~~~~~~~~ 81 (149)
+++.+|+++++++|++++|+||||+||||++++++++.-- ..+| ++|-. .......+..
T Consensus 16 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~l------------a~~G~~vpa~--------~~~l~~~d~I 75 (204)
T cd03282 16 NFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAIM------------AQIGCFVPAE--------YATLPIFNRL 75 (204)
T ss_pred cEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHHH------------HHcCCCcchh--------hcCccChhhe
Confidence 5788999999999999999999999999999999987511 1122 11111 0111111111
Q ss_pred hhcccCchHHHHHHHhhhhHHHHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCC
Q psy10767 82 EYYNCSTLEDVFLYLCEQDQILFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVL 146 (149)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~ 146 (149)
+......+. .. .....+|.|++|+ ..+.+++.+|+++|+|||++|+|+..
T Consensus 76 -~~~~~~~d~-----------~~--~~~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~~~ 125 (204)
T cd03282 76 -LSRLSNDDS-----------ME--RNLSTFASEMSET-AYILDYADGDSLVLIDELGRGTSSAD 125 (204)
T ss_pred -eEecCCccc-----------cc--hhhhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCHHH
Confidence 000000000 00 0111236788865 55566889999999999999999853
No 412
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.57 E-value=1.3e-14 Score=110.07 Aligned_cols=102 Identities=25% Similarity=0.240 Sum_probs=67.8
Q ss_pred ceEEEeCC--cEEEEECCCCCCHHHHHHHHhcCc-cCCcceEEECCeecceeeeeecCcccccCcccccCChhHHHhhcc
Q psy10767 9 LNTVIFGV--TAYGLLGPSGCGKTTLLSCIVNRL-RLDHGSISLSARTVRDIGYMPQVGLMRSGALLAEDSPSYLLEYYN 85 (149)
Q Consensus 9 i~~~~~~g--~~~~iiG~nGaGKSTLl~~i~g~~-~~~~G~i~~~g~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~ 85 (149)
.++.+.++ .+++|+||||+|||||+|.|.... .+..|....... ..++++.|.- ..+...+++...
T Consensus 20 nd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v~a~~--~~~~~~d~i~----~~l~~~~si~~~----- 88 (213)
T cd03281 20 NDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFLAHIGSFVPADS--ATIGLVDKIF----TRMSSRESVSSG----- 88 (213)
T ss_pred ceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHHHhCCCeeEcCC--cEEeeeeeee----eeeCCccChhhc-----
Confidence 34555555 689999999999999999998431 255676665332 3466666641 011111111000
Q ss_pred cCchHHHHHHHhhhhHHHHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcC
Q psy10767 86 CSTLEDVFLYLCEQDQILFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPV 145 (149)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~ 145 (149)
.+.-.-+-||++++++++.+|+++|+|||++|+|+.
T Consensus 89 ------------------------~S~f~~el~~l~~~l~~~~~~slvllDE~~~gtd~~ 124 (213)
T cd03281 89 ------------------------QSAFMIDLYQVSKALRLATRRSLVLIDEFGKGTDTE 124 (213)
T ss_pred ------------------------cchHHHHHHHHHHHHHhCCCCcEEEeccccCCCCHH
Confidence 000146779999999999999999999999999985
No 413
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.51 E-value=2.1e-14 Score=109.11 Aligned_cols=37 Identities=16% Similarity=0.076 Sum_probs=33.0
Q ss_pred ccceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCc
Q psy10767 3 DVSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRL 40 (149)
Q Consensus 3 ~~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~ 40 (149)
.++.++++++.++ ++++|+|||||||||++|+|++..
T Consensus 18 ~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~ 54 (216)
T cd03284 18 PFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIA 54 (216)
T ss_pred ceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHH
Confidence 4678899999887 999999999999999999998754
No 414
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.50 E-value=5.3e-14 Score=105.98 Aligned_cols=34 Identities=24% Similarity=0.459 Sum_probs=31.2
Q ss_pred hhHHHHHHHHHHHhcCCCEEEEcCCC-----CCCCcCCC
Q psy10767 114 GGQQRRVSFAVSLIHDPKILILDEPT-----VGLDPVLS 147 (149)
Q Consensus 114 gGqkqrv~iaral~~~p~illlDEPt-----~gLD~~~~ 147 (149)
+-|++++.|||+++.+|+++++|||| ++||+..+
T Consensus 155 ~v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~ 193 (215)
T PTZ00132 155 NFEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELV 193 (215)
T ss_pred CHHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHH
Confidence 44999999999999999999999999 99999764
No 415
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.50 E-value=5.1e-14 Score=95.89 Aligned_cols=45 Identities=22% Similarity=0.257 Sum_probs=42.0
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV 54 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~ 54 (149)
+++++++|++++|++++|+||||||||||++++. +|++.++|.++
T Consensus 3 ~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~------~G~i~~~g~di 47 (107)
T cd00820 3 TSLHGVLVDVYGKVGVLITGDSGIGKTELALELI------KRKHRLVGDDN 47 (107)
T ss_pred eEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh------CCeEEEeeEeH
Confidence 5799999999999999999999999999999986 78999998775
No 416
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.50 E-value=1.6e-13 Score=127.82 Aligned_cols=36 Identities=25% Similarity=0.260 Sum_probs=32.4
Q ss_pred CCChhHHHHHHHHHHHhcC---CCEEEEcCCCCCCCcCC
Q psy10767 111 SAFGGQQRRVSFAVSLIHD---PKILILDEPTVGLDPVL 146 (149)
Q Consensus 111 ~~sgGqkqrv~iaral~~~---p~illlDEPt~gLD~~~ 146 (149)
.|||||.||+-||..|..+ +.+++|||||+||++..
T Consensus 1699 tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d 1737 (1809)
T PRK00635 1699 SLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQ 1737 (1809)
T ss_pred ccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHH
Confidence 4699999999999999875 79999999999999753
No 417
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.48 E-value=2.5e-14 Score=125.61 Aligned_cols=104 Identities=16% Similarity=0.249 Sum_probs=67.1
Q ss_pred cceEEEeCC-cEEEEECCCCCCHHHHHHHHhcC-ccCCcc-eEEECCeecceeeeeecCcccccCcccccCChhHHHhhc
Q psy10767 8 SLNTVIFGV-TAYGLLGPSGCGKTTLLSCIVNR-LRLDHG-SISLSARTVRDIGYMPQVGLMRSGALLAEDSPSYLLEYY 84 (149)
Q Consensus 8 ~i~~~~~~g-~~~~iiG~nGaGKSTLl~~i~g~-~~~~~G-~i~~~g~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~ 84 (149)
.+|+.+..+ ++++|+||||+|||||||+|+|. +.+..| .|..... ..++++.|. +.
T Consensus 313 p~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~~Vpa~~~--~~~~~~d~i-------------------~~ 371 (771)
T TIGR01069 313 PFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSGIPIPANEH--SEIPYFEEI-------------------FA 371 (771)
T ss_pred eceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhCCCccCCcc--ccccchhhe-------------------ee
Confidence 378888777 89999999999999999999998 444444 1111100 112222221 00
Q ss_pred ccCchHHHHHHHhhhhHHHHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCC
Q psy10767 85 NCSTLEDVFLYLCEQDQILFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVL 146 (149)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~ 146 (149)
.....+.. .. ....+|++|++++.|++++ .+|+++|+|||++|+||..
T Consensus 372 ~i~~~~si-----------~~--~LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~e 419 (771)
T TIGR01069 372 DIGDEQSI-----------EQ--NLSTFSGHMKNISAILSKT-TENSLVLFDELGAGTDPDE 419 (771)
T ss_pred ecChHhHH-----------hh--hhhHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHH
Confidence 00000110 00 1112379999999998876 7899999999999999864
No 418
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.48 E-value=3.6e-13 Score=116.72 Aligned_cols=35 Identities=40% Similarity=0.584 Sum_probs=32.0
Q ss_pred CCChhHHHHHHHHHHHhcCC---CEEEEcCCCCCCCcC
Q psy10767 111 SAFGGQQRRVSFAVSLIHDP---KILILDEPTVGLDPV 145 (149)
Q Consensus 111 ~~sgGqkqrv~iaral~~~p---~illlDEPt~gLD~~ 145 (149)
.|||||.||+-||.-|..+. .++||||||+||...
T Consensus 822 TLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~ 859 (935)
T COG0178 822 TLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFD 859 (935)
T ss_pred cccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHH
Confidence 46999999999999999887 999999999999754
No 419
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.47 E-value=2e-13 Score=107.00 Aligned_cols=38 Identities=29% Similarity=0.453 Sum_probs=35.5
Q ss_pred cEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec
Q psy10767 17 TAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV 54 (149)
Q Consensus 17 ~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~ 54 (149)
.-++|+||||||||||+++|+|++.|++|+|.++|+++
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v 149 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKV 149 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEe
Confidence 45799999999999999999999999999999999764
No 420
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.45 E-value=2.6e-13 Score=103.54 Aligned_cols=48 Identities=15% Similarity=0.171 Sum_probs=43.1
Q ss_pred ccceecceEEEeCCcEEEEECCCCCCHHHHHHHHhc-CccCCcceEEEC
Q psy10767 3 DVSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVN-RLRLDHGSISLS 50 (149)
Q Consensus 3 ~~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g-~~~~~~G~i~~~ 50 (149)
.++.+|+++.+++|++++|+||||+||||++++|++ .+.++.|.....
T Consensus 18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a 66 (222)
T cd03287 18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPA 66 (222)
T ss_pred CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEc
Confidence 467899999999999999999999999999999999 677888877664
No 421
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.41 E-value=1.4e-13 Score=102.04 Aligned_cols=33 Identities=12% Similarity=0.105 Sum_probs=24.0
Q ss_pred ChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCC
Q psy10767 113 FGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVL 146 (149)
Q Consensus 113 sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~ 146 (149)
|+|++|...+++ .+.+|+++|+|||++|+|+..
T Consensus 63 s~~~~~l~~~l~-~~~~~~llllDEp~~g~d~~~ 95 (185)
T smart00534 63 MVEMKETANILK-NATENSLVLLDELGRGTSTYD 95 (185)
T ss_pred HHHHHHHHHHHH-hCCCCeEEEEecCCCCCCHHH
Confidence 566665333333 245999999999999999864
No 422
>KOG0063|consensus
Probab=99.38 E-value=5.1e-13 Score=109.36 Aligned_cols=133 Identities=20% Similarity=0.266 Sum_probs=77.7
Q ss_pred eCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeeccee-eee--------ecCccccc-CcccccCChhH----
Q psy10767 14 FGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDI-GYM--------PQVGLMRS-GALLAEDSPSY---- 79 (149)
Q Consensus 14 ~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~~~i-~~~--------~q~~~~~~-~~~~~~~~~~~---- 79 (149)
.+|++.|++|.||-||||-+++++|-++|+-|... ++-++.++ +|. ++...... ......+.+..
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~kpnlg~~~-~pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~ipr~ 176 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYD-NPPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQIPRA 176 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCCCCCCCCC-CCcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHHHHHH
Confidence 57999999999999999999999999999877543 22222111 110 11000000 00000000000
Q ss_pred -------HHhhcccCchHHHHHHHhhhhHHHHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCCCCC
Q psy10767 80 -------LLEYYNCSTLEDVFLYLCEQDQILFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLSFS 149 (149)
Q Consensus 80 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~~~~ 149 (149)
.+...........+...++......+....+ |||+-||.+||.+.+++.+++++|||.+-||.++|.+
T Consensus 177 ~k~~v~~~l~~~~~r~~~~~~~~~~~L~~~~~re~~~l--sggelqrfaia~~~vq~advyMFDEpSsYLDVKQRLk 251 (592)
T KOG0063|consen 177 VKGTVGSLLDRKDERDNKEEVCDQLDLNNLLDREVEQL--SGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLK 251 (592)
T ss_pred HHHHHHHHHHHHhhcccHHHHHHHHHHhhHHHhhhhhc--ccchhhhhhhhhhhhhhcceeEecCCcccchHHHhhh
Confidence 0000000000111111222223345555555 8999999999999999999999999999999988753
No 423
>PRK00064 recF recombination protein F; Reviewed
Probab=99.37 E-value=5e-12 Score=102.73 Aligned_cols=36 Identities=31% Similarity=0.379 Sum_probs=32.8
Q ss_pred CChhHHHHHHHHHHHh---------cCCCEEEEcCCCCCCCcCCC
Q psy10767 112 AFGGQQRRVSFAVSLI---------HDPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 112 ~sgGqkqrv~iaral~---------~~p~illlDEPt~gLD~~~~ 147 (149)
+|.||+|+++||++++ .+|+|++||||+++||+..+
T Consensus 274 ~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~ 318 (361)
T PRK00064 274 GSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRR 318 (361)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHH
Confidence 5899999999999986 79999999999999998754
No 424
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=99.37 E-value=6.5e-13 Score=110.43 Aligned_cols=48 Identities=25% Similarity=0.322 Sum_probs=44.8
Q ss_pred ceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcc-eEEECCeec
Q psy10767 5 SASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHG-SISLSARTV 54 (149)
Q Consensus 5 ~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G-~i~~~g~~~ 54 (149)
+|++||+++++||+++|+|||||||||||| +|+..|++| +|.++|.++
T Consensus 21 vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~ 69 (504)
T TIGR03238 21 ILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHS 69 (504)
T ss_pred HHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEEC
Confidence 689999999999999999999999999999 788888888 799999876
No 425
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.31 E-value=6.4e-13 Score=100.40 Aligned_cols=37 Identities=32% Similarity=0.382 Sum_probs=28.1
Q ss_pred CCChhHHHHHHHHHHHh----cCCCEEEEcCCCCCCCcCCC
Q psy10767 111 SAFGGQQRRVSFAVSLI----HDPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 111 ~~sgGqkqrv~iaral~----~~p~illlDEPt~gLD~~~~ 147 (149)
.+|||||.+++||.-|+ .++++++||||.++||...+
T Consensus 136 ~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~ 176 (220)
T PF02463_consen 136 FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNR 176 (220)
T ss_dssp GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccc
Confidence 45999999999997653 57899999999999998654
No 426
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=99.23 E-value=2.9e-11 Score=100.04 Aligned_cols=109 Identities=23% Similarity=0.209 Sum_probs=74.9
Q ss_pred ceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeecceeeeeecCcccccCcccccCChhHHHh-h
Q psy10767 5 SASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAEDSPSYLLE-Y 83 (149)
Q Consensus 5 ~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~-~ 83 (149)
+++. .|.+.+|+.++|+|+||+|||||+++|++..+++.|.|.+.|+.-+. +.++.. .
T Consensus 146 aID~-ll~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~~iGerg~e--------------------v~e~~~~~ 204 (432)
T PRK06793 146 SIDS-MLTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGERGRE--------------------VKDFIRKE 204 (432)
T ss_pred EEec-cceecCCcEEEEECCCCCChHHHHHHHhccCCCCeEEEEeCCCCccc--------------------HHHHHHHH
Confidence 3455 59999999999999999999999999999999988877665543111 111110 0
Q ss_pred cccCchHHHHHHHhhhhHHHHhhcCCCCCChhHHHHHHHHHHHh-------cCCCEEEEcCCCCCCCcC
Q psy10767 84 YNCSTLEDVFLYLCEQDQILFSLVGSESAFGGQQRRVSFAVSLI-------HDPKILILDEPTVGLDPV 145 (149)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgGqkqrv~iaral~-------~~p~illlDEPt~gLD~~ 145 (149)
.......+ . .. .....+.|.++|+|++.+.+.+ .++-++++|+||...|+.
T Consensus 205 l~~~gl~~---t------vv--v~~tsd~s~~~r~ra~~~a~~iAEyfr~~G~~VLlilDslTr~a~A~ 262 (432)
T PRK06793 205 LGEEGMRK---S------VV--VVATSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSVTRFADAR 262 (432)
T ss_pred hhhcccce---e------EE--EEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEecchHHHHHHH
Confidence 00000000 0 00 0222233799999999999887 789999999999998863
No 427
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=99.20 E-value=2e-11 Score=94.72 Aligned_cols=35 Identities=31% Similarity=0.327 Sum_probs=31.1
Q ss_pred EEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcc
Q psy10767 11 TVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHG 45 (149)
Q Consensus 11 ~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G 45 (149)
+.+.+|+.++|+||+|||||||++.|.+......+
T Consensus 11 ~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~f 45 (249)
T cd01128 11 APIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHP 45 (249)
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhccccccC
Confidence 46789999999999999999999999998876543
No 428
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=99.19 E-value=1.4e-11 Score=108.72 Aligned_cols=33 Identities=21% Similarity=0.261 Sum_probs=30.8
Q ss_pred ChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCC
Q psy10767 113 FGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVL 146 (149)
Q Consensus 113 sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~ 146 (149)
|++|+|++.|++++ .+|+++|+|||++|+||..
T Consensus 392 S~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~e 424 (782)
T PRK00409 392 SGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDE 424 (782)
T ss_pred HHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHH
Confidence 79999999999998 8999999999999999864
No 429
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.16 E-value=1.5e-10 Score=88.14 Aligned_cols=38 Identities=21% Similarity=0.236 Sum_probs=35.1
Q ss_pred ccceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCc
Q psy10767 3 DVSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRL 40 (149)
Q Consensus 3 ~~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~ 40 (149)
+++-+|++|+.+++++++|.||||+||||+++++++..
T Consensus 17 ~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~ 54 (218)
T cd03286 17 SFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAV 54 (218)
T ss_pred CeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHH
Confidence 46788999999999999999999999999999998874
No 430
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=99.02 E-value=1.7e-10 Score=85.46 Aligned_cols=44 Identities=25% Similarity=0.310 Sum_probs=39.7
Q ss_pred ceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCe
Q psy10767 9 LNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSAR 52 (149)
Q Consensus 9 i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~ 52 (149)
+.+.+..|+.++|+||||||||||+++|+|+++|+.|.|.+.+.
T Consensus 18 l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~ 61 (186)
T cd01130 18 LWLAVEARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDT 61 (186)
T ss_pred HHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCc
Confidence 45668899999999999999999999999999999999998653
No 431
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=99.01 E-value=4.3e-10 Score=89.61 Aligned_cols=42 Identities=29% Similarity=0.415 Sum_probs=37.5
Q ss_pred ceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEEC
Q psy10767 9 LNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLS 50 (149)
Q Consensus 9 i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~ 50 (149)
+++.+..|+.++|+||+|||||||+++|++.+++..|.+.+.
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ie 178 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIE 178 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEc
Confidence 456788999999999999999999999999999888877764
No 432
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.99 E-value=2e-10 Score=102.65 Aligned_cols=37 Identities=27% Similarity=0.507 Sum_probs=33.9
Q ss_pred CCChhHHHHHHHHHHHhcCC--CEEEEcCCCCCCCcCCC
Q psy10767 111 SAFGGQQRRVSFAVSLIHDP--KILILDEPTVGLDPVLS 147 (149)
Q Consensus 111 ~~sgGqkqrv~iaral~~~p--~illlDEPt~gLD~~~~ 147 (149)
.|||||+||++||++|+.+| ++|||||||+|||+..+
T Consensus 487 tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~ 525 (924)
T TIGR00630 487 TLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDN 525 (924)
T ss_pred cCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHH
Confidence 46999999999999999986 89999999999998754
No 433
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=98.99 E-value=2.1e-10 Score=102.67 Aligned_cols=37 Identities=27% Similarity=0.507 Sum_probs=34.0
Q ss_pred CCChhHHHHHHHHHHHhcCC--CEEEEcCCCCCCCcCCC
Q psy10767 111 SAFGGQQRRVSFAVSLIHDP--KILILDEPTVGLDPVLS 147 (149)
Q Consensus 111 ~~sgGqkqrv~iaral~~~p--~illlDEPt~gLD~~~~ 147 (149)
.|||||+|||+||++|+.+| ++|||||||+|||+..+
T Consensus 489 ~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~ 527 (943)
T PRK00349 489 TLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDN 527 (943)
T ss_pred hCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHH
Confidence 46999999999999999997 99999999999999754
No 434
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=98.97 E-value=9.9e-10 Score=84.20 Aligned_cols=34 Identities=18% Similarity=0.015 Sum_probs=28.8
Q ss_pred EEEeCCcEEEEECCCCCCHHHH-HHHHhcCccCCc
Q psy10767 11 TVIFGVTAYGLLGPSGCGKTTL-LSCIVNRLRLDH 44 (149)
Q Consensus 11 ~~~~~g~~~~iiG~nGaGKSTL-l~~i~g~~~~~~ 44 (149)
--+++|+++.|+|+|||||||| ++++.+..++..
T Consensus 19 ggi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~ 53 (230)
T PRK08533 19 GGIPAGSLILIEGDESTGKSILSQRLAYGFLQNGY 53 (230)
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCC
Confidence 3478899999999999999999 689998776543
No 435
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.96 E-value=6.7e-09 Score=70.81 Aligned_cols=92 Identities=29% Similarity=0.348 Sum_probs=57.6
Q ss_pred CcEEEEECCCCCCHHHHHHHHhcCccCCc-ceEEECCeecceeeeeecCcccccCcccccCChhHHHhhcccCchHHHHH
Q psy10767 16 VTAYGLLGPSGCGKTTLLSCIVNRLRLDH-GSISLSARTVRDIGYMPQVGLMRSGALLAEDSPSYLLEYYNCSTLEDVFL 94 (149)
Q Consensus 16 g~~~~iiG~nGaGKSTLl~~i~g~~~~~~-G~i~~~g~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (149)
+..+.|+||+|+||||+++.|+....... +-++++..... . .......
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~------~------------~~~~~~~------------- 50 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDIL------E------------EVLDQLL------------- 50 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEcc------c------------cCHHHHH-------------
Confidence 56889999999999999999999987654 34444332100 0 0000000
Q ss_pred HHhhhhHHHHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcC
Q psy10767 95 YLCEQDQILFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPV 145 (149)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~ 145 (149)
......... ...+.+..+..+.++-..+|+++++||+..-.+..
T Consensus 51 -----~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~ 94 (148)
T smart00382 51 -----LIIVGGKKA--SGSGELRLRLALALARKLKPDVLILDEITSLLDAE 94 (148)
T ss_pred -----hhhhhccCC--CCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHH
Confidence 000000011 11467778888888888889999999998876654
No 436
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.94 E-value=3.7e-10 Score=84.10 Aligned_cols=23 Identities=43% Similarity=0.677 Sum_probs=21.8
Q ss_pred EEEEECCCCCCHHHHHHHHhcCc
Q psy10767 18 AYGLLGPSGCGKTTLLSCIVNRL 40 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i~g~~ 40 (149)
++||+||||||||||.++|.+++
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 57999999999999999999988
No 437
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=98.92 E-value=2.5e-09 Score=79.63 Aligned_cols=36 Identities=31% Similarity=0.487 Sum_probs=30.0
Q ss_pred CChhHHHHHHHHHHHhcCC---CEEEEcCCCCCCCcCCC
Q psy10767 112 AFGGQQRRVSFAVSLIHDP---KILILDEPTVGLDPVLS 147 (149)
Q Consensus 112 ~sgGqkqrv~iaral~~~p---~illlDEPt~gLD~~~~ 147 (149)
+|.|+||.+.|+.++...+ .++++|||-++|+|...
T Consensus 237 ~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q 275 (303)
T PF13304_consen 237 LSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQ 275 (303)
T ss_dssp --HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHH
T ss_pred CCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHH
Confidence 3899999999888887766 89999999999999643
No 438
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.92 E-value=9.6e-10 Score=92.25 Aligned_cols=50 Identities=24% Similarity=0.426 Sum_probs=40.7
Q ss_pred eecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeecceeeeeecC
Q psy10767 6 ASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQV 63 (149)
Q Consensus 6 ~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~~~i~~~~q~ 63 (149)
+++.++.+++|.+++++|||||||||++..|++.+....|.. +|+++.++
T Consensus 246 ~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~--------kV~LI~~D 295 (484)
T PRK06995 246 LDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGAS--------KVALLTTD 295 (484)
T ss_pred ccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCCC--------eEEEEeCC
Confidence 456677788899999999999999999999999887666642 45666665
No 439
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.90 E-value=2.7e-09 Score=88.70 Aligned_cols=59 Identities=22% Similarity=0.336 Sum_probs=49.4
Q ss_pred ceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECC---eec-------------ceeeeeecCc
Q psy10767 5 SASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSA---RTV-------------RDIGYMPQVG 64 (149)
Q Consensus 5 ~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g---~~~-------------~~i~~~~q~~ 64 (149)
+++.++ .+.+|+.++|+|+||||||||+++|+++.+|+.|.|.+.| +++ +.|++++|.+
T Consensus 155 aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd 229 (450)
T PRK06002 155 VIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSD 229 (450)
T ss_pred Eeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCC
Confidence 456664 8999999999999999999999999999999999888753 332 3588888863
No 440
>PRK13695 putative NTPase; Provisional
Probab=98.90 E-value=2e-10 Score=84.08 Aligned_cols=33 Identities=12% Similarity=0.136 Sum_probs=28.1
Q ss_pred CChhHHHHHHHHHHHhcCCCEEEEcC--CCCCCCc
Q psy10767 112 AFGGQQRRVSFAVSLIHDPKILILDE--PTVGLDP 144 (149)
Q Consensus 112 ~sgGqkqrv~iaral~~~p~illlDE--Pt~gLD~ 144 (149)
+|++++-+..+++..+.+|+++++|| |+.++|+
T Consensus 79 lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~ 113 (174)
T PRK13695 79 LEDLERIGIPALERALEEADVIIIDEIGKMELKSP 113 (174)
T ss_pred hHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhH
Confidence 47999999999999999999999999 5555554
No 441
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.88 E-value=2.8e-09 Score=88.41 Aligned_cols=40 Identities=30% Similarity=0.316 Sum_probs=37.5
Q ss_pred ceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcc
Q psy10767 5 SASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHG 45 (149)
Q Consensus 5 ~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G 45 (149)
+++++ |++.+|++++|+|+||||||||+++|+|+.+++.+
T Consensus 145 aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~ 184 (434)
T PRK07196 145 AINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVV 184 (434)
T ss_pred eccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeE
Confidence 68899 99999999999999999999999999999988753
No 442
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=98.82 E-value=5e-09 Score=87.16 Aligned_cols=47 Identities=28% Similarity=0.350 Sum_probs=43.7
Q ss_pred ceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCe
Q psy10767 5 SASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSAR 52 (149)
Q Consensus 5 ~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~ 52 (149)
+++++ |.+.+|++++|+|+||+|||||+++|+|+.+++.|.|.+.|+
T Consensus 148 vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Ge 194 (438)
T PRK07721 148 AIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGE 194 (438)
T ss_pred hhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEec
Confidence 57888 999999999999999999999999999999999999988544
No 443
>PRK08149 ATP synthase SpaL; Validated
Probab=98.80 E-value=1.2e-08 Score=84.65 Aligned_cols=50 Identities=26% Similarity=0.414 Sum_probs=45.3
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCc---ceEEECCeec
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDH---GSISLSARTV 54 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~---G~i~~~g~~~ 54 (149)
.+++++ +.+.+|+.++|+|+||+|||||+++|++...++. |.|..+++++
T Consensus 140 ~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~ev 192 (428)
T PRK08149 140 RAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREV 192 (428)
T ss_pred EEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCccH
Confidence 378899 9999999999999999999999999999998886 8888887765
No 444
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.79 E-value=2.7e-08 Score=74.50 Aligned_cols=33 Identities=24% Similarity=0.409 Sum_probs=26.5
Q ss_pred EEEEECCCCCCHHHHHHHHhcCccCC-cceEEEC
Q psy10767 18 AYGLLGPSGCGKTTLLSCIVNRLRLD-HGSISLS 50 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i~g~~~~~-~G~i~~~ 50 (149)
++.|+||+||||||+++.|.+.+.+. .|.|...
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~ 36 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTI 36 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEE
Confidence 67899999999999999998887643 4555543
No 445
>COG3910 Predicted ATPase [General function prediction only]
Probab=98.78 E-value=1.3e-08 Score=75.71 Aligned_cols=32 Identities=31% Similarity=0.444 Sum_probs=25.0
Q ss_pred ChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcC
Q psy10767 113 FGGQQRRVSFAVSLIHDPKILILDEPTVGLDPV 145 (149)
Q Consensus 113 sgGqkqrv~iaral~~~p~illlDEPt~gLD~~ 145 (149)
|.||----.+.+.+ +.--++|||||-++|.|.
T Consensus 131 SHGEsf~~i~~~rf-~~~GiYiLDEPEa~LSp~ 162 (233)
T COG3910 131 SHGESFLAIFHNRF-NGQGIYILDEPEAALSPS 162 (233)
T ss_pred ccchHHHHHHHHHh-ccCceEEecCccccCCHH
Confidence 78887665565554 456899999999999885
No 446
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=98.76 E-value=1.2e-08 Score=81.86 Aligned_cols=46 Identities=28% Similarity=0.348 Sum_probs=42.0
Q ss_pred ceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECC
Q psy10767 5 SASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSA 51 (149)
Q Consensus 5 ~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g 51 (149)
+++++ +.+.+|+.++|+|+||+|||||+++|+|...++.|.+..-|
T Consensus 59 aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~~vi~~iG 104 (326)
T cd01136 59 AIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTTADVNVIALIG 104 (326)
T ss_pred EEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEe
Confidence 67888 99999999999999999999999999999999988776644
No 447
>PHA02562 46 endonuclease subunit; Provisional
Probab=98.76 E-value=4.5e-09 Score=89.38 Aligned_cols=37 Identities=32% Similarity=0.390 Sum_probs=32.9
Q ss_pred CCChhHHHHHHHHHHHh----------cCCCEEEEcCCC-CCCCcCCC
Q psy10767 111 SAFGGQQRRVSFAVSLI----------HDPKILILDEPT-VGLDPVLS 147 (149)
Q Consensus 111 ~~sgGqkqrv~iaral~----------~~p~illlDEPt-~gLD~~~~ 147 (149)
.+|+|||||++||++|+ .+|+++|||||| ++||+..+
T Consensus 468 ~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~ 515 (562)
T PHA02562 468 SFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGT 515 (562)
T ss_pred hcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHH
Confidence 46899999999999987 599999999998 78998754
No 448
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.74 E-value=1.1e-08 Score=75.44 Aligned_cols=36 Identities=25% Similarity=0.301 Sum_probs=31.4
Q ss_pred CCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec
Q psy10767 15 GVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV 54 (149)
Q Consensus 15 ~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~ 54 (149)
+|++++|+|+|||||||++++|+++..+ +.++|.++
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~----~~i~gd~~ 37 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA----KFIDGDDL 37 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC----EEECCccc
Confidence 5899999999999999999999999876 57777653
No 449
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.71 E-value=1.3e-08 Score=75.94 Aligned_cols=28 Identities=36% Similarity=0.440 Sum_probs=26.2
Q ss_pred eCCcEEEEECCCCCCHHHHHHHHhcCcc
Q psy10767 14 FGVTAYGLLGPSGCGKTTLLSCIVNRLR 41 (149)
Q Consensus 14 ~~g~~~~iiG~nGaGKSTLl~~i~g~~~ 41 (149)
++|++++|+||||||||||+++|++.++
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5899999999999999999999999874
No 450
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.69 E-value=1.2e-08 Score=77.84 Aligned_cols=34 Identities=32% Similarity=0.403 Sum_probs=31.2
Q ss_pred eCCcEEEEECCCCCCHHHHHHHHhcCccCCcceE
Q psy10767 14 FGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSI 47 (149)
Q Consensus 14 ~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i 47 (149)
.+..++||.||||||||||+++|++++++..|.+
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~ 64 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELP 64 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCc
Confidence 4567999999999999999999999999999983
No 451
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=98.69 E-value=1.9e-08 Score=83.54 Aligned_cols=48 Identities=23% Similarity=0.315 Sum_probs=43.9
Q ss_pred ceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCee
Q psy10767 5 SASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSART 53 (149)
Q Consensus 5 ~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~ 53 (149)
+++++ |.+.+|+.++|+|+||+|||||+++|++...++.|.+.+.|+.
T Consensus 145 aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d~~vi~~iGeR 192 (433)
T PRK07594 145 AIDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGER 192 (433)
T ss_pred eeeee-eecCCCCEEEEECCCCCCccHHHHHhcCCCCCCEEEEEEECCC
Confidence 67888 9999999999999999999999999999999999888776654
No 452
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.69 E-value=2.8e-08 Score=73.51 Aligned_cols=35 Identities=31% Similarity=0.488 Sum_probs=29.5
Q ss_pred CcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCee
Q psy10767 16 VTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSART 53 (149)
Q Consensus 16 g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~ 53 (149)
|++++|+||||||||||+++|++...+ .+.+.+..
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~---~~~~~~~~ 36 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQT---QLLVAHRY 36 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCC---eEEEcCEE
Confidence 789999999999999999999998765 46665543
No 453
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=98.69 E-value=9.9e-09 Score=87.90 Aligned_cols=36 Identities=33% Similarity=0.482 Sum_probs=32.6
Q ss_pred CChhHHHHHHHHHHHhcC----CCEEEEcCCCCCCCcCCC
Q psy10767 112 AFGGQQRRVSFAVSLIHD----PKILILDEPTVGLDPVLS 147 (149)
Q Consensus 112 ~sgGqkqrv~iaral~~~----p~illlDEPt~gLD~~~~ 147 (149)
+||||+||++||++++.. |+++|||||++|||+..+
T Consensus 441 lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~ 480 (563)
T TIGR00634 441 ASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETA 480 (563)
T ss_pred cCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHH
Confidence 589999999999999985 699999999999998654
No 454
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.68 E-value=9.8e-09 Score=95.19 Aligned_cols=35 Identities=29% Similarity=0.576 Sum_probs=24.2
Q ss_pred cEEEEECCCCCCHHHHHHHH----hcCccCC-cceEEECC
Q psy10767 17 TAYGLLGPSGCGKTTLLSCI----VNRLRLD-HGSISLSA 51 (149)
Q Consensus 17 ~~~~iiG~nGaGKSTLl~~i----~g~~~~~-~G~i~~~g 51 (149)
.+++|+|||||||||++.+| .|..+|. .|.+++++
T Consensus 29 ~~~~I~G~NGaGKTTil~ai~~al~G~~~~~~~g~~~i~~ 68 (1311)
T TIGR00606 29 PLTILVGPNGAGKTTIIECLKYICTGDFPPGTKGNTFVHD 68 (1311)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCceEecC
Confidence 36777777777777777777 4777764 56666654
No 455
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=98.68 E-value=3.1e-08 Score=60.99 Aligned_cols=38 Identities=26% Similarity=0.241 Sum_probs=30.4
Q ss_pred ecceEEEeC-CcEEEEECCCCCCHHHHHHHHhcCccCCc
Q psy10767 7 SSLNTVIFG-VTAYGLLGPSGCGKTTLLSCIVNRLRLDH 44 (149)
Q Consensus 7 ~~i~~~~~~-g~~~~iiG~nGaGKSTLl~~i~g~~~~~~ 44 (149)
++-.+.+.+ |.++.|.|||||||||++.+|.=++.+..
T Consensus 13 ~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~~~~ 51 (62)
T PF13555_consen 13 DGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLYGNT 51 (62)
T ss_pred CCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHcCCc
Confidence 445677764 56999999999999999999987766544
No 456
>PRK09099 type III secretion system ATPase; Provisional
Probab=98.68 E-value=2.7e-08 Score=82.74 Aligned_cols=48 Identities=23% Similarity=0.361 Sum_probs=44.1
Q ss_pred ceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCee
Q psy10767 5 SASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSART 53 (149)
Q Consensus 5 ~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~ 53 (149)
+++++ +.+.+|++++|+|+||+|||||+++|++...++.|.|.+.|+.
T Consensus 153 ~ID~l-~~i~~Gq~~~I~G~sG~GKTtLl~~ia~~~~~d~~vi~~iGer 200 (441)
T PRK09099 153 IVDGL-MTLGEGQRMGIFAPAGVGKSTLMGMFARGTQCDVNVIALIGER 200 (441)
T ss_pred eccce-eeecCCCEEEEECCCCCCHHHHHHHHhCCCCCCeEEEEEEccC
Confidence 67888 9999999999999999999999999999999999988887743
No 457
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.68 E-value=6.8e-09 Score=73.47 Aligned_cols=32 Identities=28% Similarity=0.439 Sum_probs=26.2
Q ss_pred EEEEECCCCCCHHHHHHHHhcCccCCcceEEE
Q psy10767 18 AYGLLGPSGCGKTTLLSCIVNRLRLDHGSISL 49 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~ 49 (149)
++.|.|++|+||||+++.+++...+..+.+.+
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~ 32 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVY 32 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEE
Confidence 36899999999999999999988765555544
No 458
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.67 E-value=1.6e-08 Score=76.04 Aligned_cols=29 Identities=34% Similarity=0.314 Sum_probs=27.0
Q ss_pred eCCcEEEEECCCCCCHHHHHHHHhcCccC
Q psy10767 14 FGVTAYGLLGPSGCGKTTLLSCIVNRLRL 42 (149)
Q Consensus 14 ~~g~~~~iiG~nGaGKSTLl~~i~g~~~~ 42 (149)
++|++++|+||||||||||+++|++++.+
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~ 32 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLGK 32 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 67999999999999999999999998865
No 459
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=98.66 E-value=2.6e-08 Score=82.62 Aligned_cols=47 Identities=26% Similarity=0.304 Sum_probs=43.1
Q ss_pred ceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCe
Q psy10767 5 SASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSAR 52 (149)
Q Consensus 5 ~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~ 52 (149)
+++++ |.+.+|+.++|+|+||+|||||+++|++...++.|.+...|.
T Consensus 135 ~id~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~ 181 (422)
T TIGR02546 135 AIDGL-LTCGEGQRIGIFAGAGVGKSTLLGMIARGASADVNVIALIGE 181 (422)
T ss_pred eehhh-ccccCCCEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEcc
Confidence 68888 999999999999999999999999999999999988877443
No 460
>PLN02796 D-glycerate 3-kinase
Probab=98.65 E-value=7.1e-09 Score=83.62 Aligned_cols=50 Identities=26% Similarity=0.352 Sum_probs=40.7
Q ss_pred cceecceEEE---eCCcE-----EEEECCCCCCHHHHHHHHhcCccCC---cceEEECCee
Q psy10767 4 VSASSLNTVI---FGVTA-----YGLLGPSGCGKTTLLSCIVNRLRLD---HGSISLSART 53 (149)
Q Consensus 4 ~~~~~i~~~~---~~g~~-----~~iiG~nGaGKSTLl~~i~g~~~~~---~G~i~~~g~~ 53 (149)
.+++++++.+ ++|+. +||+|++|||||||++.|.+++.+. .|.|.+++..
T Consensus 80 ~il~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfY 140 (347)
T PLN02796 80 WCEDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFY 140 (347)
T ss_pred HHHHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcc
Confidence 4567777776 56665 9999999999999999999999764 5778887754
No 461
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=98.65 E-value=3.7e-08 Score=81.54 Aligned_cols=49 Identities=24% Similarity=0.241 Sum_probs=43.7
Q ss_pred eecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec
Q psy10767 6 ASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV 54 (149)
Q Consensus 6 ~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~ 54 (149)
.-|.+|.+.+|+.++|+|+||+|||||+++|++..+|+.|.|.+.|+..
T Consensus 130 aiD~~~~i~~Gq~i~I~G~sG~GKTtLl~~I~~~~~~~~gvi~~iGer~ 178 (418)
T TIGR03498 130 VIDTFLPLCRGQRLGIFAGSGVGKSTLLSMLARNTDADVVVIALVGERG 178 (418)
T ss_pred EEeeeccccCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEeeec
Confidence 3357999999999999999999999999999999999999888777543
No 462
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=98.64 E-value=1.8e-08 Score=79.81 Aligned_cols=37 Identities=19% Similarity=0.174 Sum_probs=31.5
Q ss_pred eCCcEEEEECCCCCCHHHHHHHHhcCcc--CCcceEEEC
Q psy10767 14 FGVTAYGLLGPSGCGKTTLLSCIVNRLR--LDHGSISLS 50 (149)
Q Consensus 14 ~~g~~~~iiG~nGaGKSTLl~~i~g~~~--~~~G~i~~~ 50 (149)
+.-.++||.|+||||||||+++|.+++. |++|+|.+.
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi 98 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELI 98 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEE
Confidence 3456999999999999999999999987 677887663
No 463
>PRK10869 recombination and repair protein; Provisional
Probab=98.63 E-value=2.6e-08 Score=85.18 Aligned_cols=36 Identities=33% Similarity=0.578 Sum_probs=32.6
Q ss_pred CChhHHHHHHHHHHHhc----CCCEEEEcCCCCCCCcCCC
Q psy10767 112 AFGGQQRRVSFAVSLIH----DPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 112 ~sgGqkqrv~iaral~~----~p~illlDEPt~gLD~~~~ 147 (149)
+||||+||++||++++. +|+++|+|||++|||+...
T Consensus 431 lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~ 470 (553)
T PRK10869 431 ASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTA 470 (553)
T ss_pred CCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHH
Confidence 48999999999999997 6899999999999998643
No 464
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.62 E-value=4.4e-08 Score=71.72 Aligned_cols=32 Identities=9% Similarity=-0.129 Sum_probs=25.9
Q ss_pred CChhHHH------HHHHHHHHhcCCCEEEEcCCCCCCC
Q psy10767 112 AFGGQQR------RVSFAVSLIHDPKILILDEPTVGLD 143 (149)
Q Consensus 112 ~sgGqkq------rv~iaral~~~p~illlDEPt~gLD 143 (149)
+|+|++| +.....+...+|+++++|||++.+|
T Consensus 72 ~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~ 109 (187)
T cd01124 72 IGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLL 109 (187)
T ss_pred cchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhh
Confidence 4788888 5555555678999999999999998
No 465
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=98.62 E-value=4.3e-08 Score=81.67 Aligned_cols=47 Identities=30% Similarity=0.359 Sum_probs=41.7
Q ss_pred ceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCe
Q psy10767 5 SASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSAR 52 (149)
Q Consensus 5 ~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~ 52 (149)
+++++ |.+.+|+.++|+|+||+|||||+++|++..+++.|.+...|.
T Consensus 153 ~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~ 199 (440)
T TIGR01026 153 SIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEADVNVIALIGE 199 (440)
T ss_pred eeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEEEEee
Confidence 57777 999999999999999999999999999999998887666443
No 466
>PRK01889 GTPase RsgA; Reviewed
Probab=98.61 E-value=2.8e-08 Score=80.75 Aligned_cols=58 Identities=24% Similarity=0.375 Sum_probs=46.2
Q ss_pred eecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec------ceeeeeecC
Q psy10767 6 ASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV------RDIGYMPQV 63 (149)
Q Consensus 6 ~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~------~~i~~~~q~ 63 (149)
++.+.-.+.+|+.++|+|+||+|||||++.|+|...+..|+|.+++..- ..+.+++|.
T Consensus 185 l~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~tt~~~~l~~l~~~ 248 (356)
T PRK01889 185 LDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRHTTTHRELHPLPSG 248 (356)
T ss_pred HHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcchhhhccEEEecCC
Confidence 3444555678999999999999999999999999999999999875321 346666664
No 467
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.61 E-value=4.4e-08 Score=74.85 Aligned_cols=32 Identities=13% Similarity=0.178 Sum_probs=27.2
Q ss_pred ChhHHHHHHHHHHHhc--CCCEEEEcCCCCCCCc
Q psy10767 113 FGGQQRRVSFAVSLIH--DPKILILDEPTVGLDP 144 (149)
Q Consensus 113 sgGqkqrv~iaral~~--~p~illlDEPt~gLD~ 144 (149)
+.++++.+..++.++. +|+++++||||+.+|.
T Consensus 102 ~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~ 135 (234)
T PRK06067 102 STLANKLLELIIEFIKSKREDVIIIDSLTIFATY 135 (234)
T ss_pred cchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhc
Confidence 4688899999999887 9999999999976553
No 468
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=98.61 E-value=5.4e-08 Score=81.03 Aligned_cols=45 Identities=29% Similarity=0.333 Sum_probs=41.2
Q ss_pred eEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCc---ceEEECCeec
Q psy10767 10 NTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDH---GSISLSARTV 54 (149)
Q Consensus 10 ~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~---G~i~~~g~~~ 54 (149)
-|.+.+|++++|+|+||+|||||+++|+|+.+++. |.|.+.+.++
T Consensus 169 ll~I~~Gqri~I~G~sG~GKTTLL~~Ia~~~~~d~iv~g~Igerg~ev 216 (455)
T PRK07960 169 LLTVGRGQRMGLFAGSGVGKSVLLGMMARYTQADVIVVGLIGERGREV 216 (455)
T ss_pred cccccCCcEEEEECCCCCCccHHHHHHhCCCCCCEEEEEEEEECCeEH
Confidence 39999999999999999999999999999999885 8888888765
No 469
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=98.60 E-value=7.1e-08 Score=79.80 Aligned_cols=48 Identities=29% Similarity=0.362 Sum_probs=43.7
Q ss_pred ceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCee
Q psy10767 5 SASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSART 53 (149)
Q Consensus 5 ~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~ 53 (149)
+++++ +.+.+|+.++|+|+||+|||||+++|++..+++.|.|.+.|+.
T Consensus 127 ~iD~l-~~i~~Gqri~I~G~sG~GKTtLl~~i~~~~~~~~gvi~~~Ger 174 (413)
T TIGR03497 127 AIDGL-LTIGKGQRVGIFAGSGVGKSTLLGMIARNAKADINVIALIGER 174 (413)
T ss_pred eeeeE-EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCeEEEEEEccc
Confidence 57888 9999999999999999999999999999999999988776654
No 470
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.57 E-value=5.4e-08 Score=82.29 Aligned_cols=50 Identities=28% Similarity=0.295 Sum_probs=45.3
Q ss_pred ceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec
Q psy10767 5 SASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV 54 (149)
Q Consensus 5 ~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~ 54 (149)
+++++++.+.+|+.+.|+||||||||||+++|.|+++|.+|++.+....+
T Consensus 199 ~~~al~laa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i 248 (506)
T PRK09862 199 GKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAI 248 (506)
T ss_pred HHhhhheeccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchh
Confidence 56788999999999999999999999999999999999999988876544
No 471
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=98.56 E-value=1e-07 Score=78.79 Aligned_cols=47 Identities=23% Similarity=0.296 Sum_probs=40.9
Q ss_pred ceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCe
Q psy10767 5 SASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSAR 52 (149)
Q Consensus 5 ~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~ 52 (149)
+++.+ |.+.+|++++|+|+||+|||||+++|++..+++.+.+...|+
T Consensus 127 ~id~l-~~i~~Gq~~~I~G~sG~GKTtLl~~I~~~~~~~~~vi~~iGe 173 (411)
T TIGR03496 127 AINGL-LTVGRGQRMGIFAGSGVGKSTLLGMMARYTEADVVVVGLIGE 173 (411)
T ss_pred eecce-EEEecCcEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEEec
Confidence 45666 999999999999999999999999999999998776655554
No 472
>PRK05922 type III secretion system ATPase; Validated
Probab=98.54 E-value=1.3e-07 Score=78.54 Aligned_cols=46 Identities=22% Similarity=0.263 Sum_probs=40.3
Q ss_pred eecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCe
Q psy10767 6 ASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSAR 52 (149)
Q Consensus 6 ~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~ 52 (149)
++. -+.+.+|+.++|+|+||+|||||+++|+|..+++.|.+..-|.
T Consensus 148 ID~-ll~I~~GqrigI~G~nG~GKSTLL~~Ia~~~~~d~gvi~liGe 193 (434)
T PRK05922 148 IDA-FLTLGKGQRIGVFSEPGSGKSSLLSTIAKGSKSTINVIALIGE 193 (434)
T ss_pred ecc-eEEEcCCcEEEEECCCCCChHHHHHHHhccCCCCceEEEEeCC
Confidence 444 4999999999999999999999999999999999888866554
No 473
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.54 E-value=3.2e-08 Score=86.89 Aligned_cols=58 Identities=24% Similarity=0.339 Sum_probs=43.4
Q ss_pred ceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcc--eEEECCeecceeeeeec
Q psy10767 5 SASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHG--SISLSARTVRDIGYMPQ 62 (149)
Q Consensus 5 ~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G--~i~~~g~~~~~i~~~~q 62 (149)
++++.++.+++|++++++||||+||||++..|++.+....| .|.+-..+..+++.+.|
T Consensus 174 il~~~~~~~~~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQ 233 (767)
T PRK14723 174 VLRDEDALLAQGGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQ 233 (767)
T ss_pred hccCCCcccCCCeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHH
Confidence 45677888888999999999999999999999999866665 55554444334444333
No 474
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=98.53 E-value=1e-07 Score=79.19 Aligned_cols=49 Identities=24% Similarity=0.234 Sum_probs=43.7
Q ss_pred ceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec
Q psy10767 5 SASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV 54 (149)
Q Consensus 5 ~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~ 54 (149)
+++++ +.+.+|++++|+|+||+|||||+++|++...++.+.|...|+.-
T Consensus 147 aid~l-~~i~~Gq~~~i~G~sG~GKStLl~~i~~~~~~~v~vi~~iGerg 195 (434)
T PRK08472 147 SIDGL-LTCGKGQKLGIFAGSGVGKSTLMGMIVKGCLAPIKVVALIGERG 195 (434)
T ss_pred Hhhhc-ceecCCCEEEEECCCCCCHHHHHHHHhhccCCCEEEEEeeCccc
Confidence 57788 99999999999999999999999999999888888888776543
No 475
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=98.52 E-value=1.1e-07 Score=69.77 Aligned_cols=48 Identities=25% Similarity=0.246 Sum_probs=37.7
Q ss_pred ceecceEEEeCCcEEEEECCCCCCHHHHHHHHhc--------CccCCcceEEECCee
Q psy10767 5 SASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVN--------RLRLDHGSISLSART 53 (149)
Q Consensus 5 ~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g--------~~~~~~G~i~~~g~~ 53 (149)
+++++++..+++.+ +|+|++|||||||++.+.+ ...++.+++.+++..
T Consensus 9 ~~~~~~~~~~~~ki-~ilG~~~~GKStLi~~l~~~~~~~~~~T~~~~~~~i~~~~~~ 64 (190)
T cd00879 9 VLSSLGLYNKEAKI-LFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELTIGNIK 64 (190)
T ss_pred HHHHhhcccCCCEE-EEECCCCCCHHHHHHHHhcCCCcccCCccCcceEEEEECCEE
Confidence 36778888777777 9999999999999999998 344556777776543
No 476
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.51 E-value=5.6e-08 Score=88.50 Aligned_cols=36 Identities=25% Similarity=0.212 Sum_probs=25.4
Q ss_pred CCChhHHHHHHHHHHHhc----------CCCEEEEcCCCCCCCcCC
Q psy10767 111 SAFGGQQRRVSFAVSLIH----------DPKILILDEPTVGLDPVL 146 (149)
Q Consensus 111 ~~sgGqkqrv~iaral~~----------~p~illlDEPt~gLD~~~ 146 (149)
.+||||++|++||+||+. +|++||+||||++||+..
T Consensus 950 ~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~ 995 (1042)
T TIGR00618 950 TLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDS 995 (1042)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHH
Confidence 347777777777777764 677777777777777654
No 477
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=98.51 E-value=1.1e-07 Score=79.29 Aligned_cols=38 Identities=26% Similarity=0.343 Sum_probs=35.5
Q ss_pred ceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCC
Q psy10767 5 SASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLD 43 (149)
Q Consensus 5 ~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~ 43 (149)
+++.+ |.+.+|+.++|+|+||+|||||+++|+|+..++
T Consensus 158 aID~l-~~I~~GqrigI~G~sG~GKSTLl~~I~g~~~~d 195 (451)
T PRK05688 158 SINGL-LTVGRGQRLGLFAGTGVGKSVLLGMMTRFTEAD 195 (451)
T ss_pred eecce-EEecCCcEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 67788 999999999999999999999999999998776
No 478
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=98.50 E-value=6.4e-08 Score=73.75 Aligned_cols=32 Identities=28% Similarity=0.439 Sum_probs=26.3
Q ss_pred EEEEECCCCCCHHHHHHHHhcCccC--CcceEEE
Q psy10767 18 AYGLLGPSGCGKTTLLSCIVNRLRL--DHGSISL 49 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i~g~~~~--~~G~i~~ 49 (149)
++||.|+||||||||++.|.+.+.+ .++.|.+
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~v 34 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVEL 34 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEE
Confidence 5899999999999999999999875 3444443
No 479
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=98.49 E-value=7.3e-08 Score=87.79 Aligned_cols=33 Identities=36% Similarity=0.337 Sum_probs=16.4
Q ss_pred ChhHHHHHHHHHHHhc--------CCCEEEEcCCCCCCCcC
Q psy10767 113 FGGQQRRVSFAVSLIH--------DPKILILDEPTVGLDPV 145 (149)
Q Consensus 113 sgGqkqrv~iaral~~--------~p~illlDEPt~gLD~~ 145 (149)
||||+++++||+||+. +|++||+||||++||+.
T Consensus 951 SgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~ 991 (1047)
T PRK10246 951 SGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSE 991 (1047)
T ss_pred CHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHH
Confidence 4555555555555543 44555555555555543
No 480
>PRK04863 mukB cell division protein MukB; Provisional
Probab=98.49 E-value=2e-07 Score=86.98 Aligned_cols=46 Identities=20% Similarity=0.179 Sum_probs=39.8
Q ss_pred eecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCe
Q psy10767 6 ASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSAR 52 (149)
Q Consensus 6 ~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~ 52 (149)
+.+..|.+.+| +++|+|+|||||||+|++|++++.|..|.+.+++.
T Consensus 18 ~~~~~~~f~~~-~~~l~G~NGaGKSTll~ai~~~l~~~~~~~~f~~~ 63 (1486)
T PRK04863 18 FFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNT 63 (1486)
T ss_pred ccceEEEecCC-eEEEECCCCCCHHHHHHHHHccccCCCCeEEECCc
Confidence 34557888875 99999999999999999999999999999988754
No 481
>PRK03846 adenylylsulfate kinase; Provisional
Probab=98.48 E-value=1.3e-07 Score=70.66 Aligned_cols=50 Identities=24% Similarity=0.296 Sum_probs=40.1
Q ss_pred eCCcEEEEECCCCCCHHHHHHHHhcCccCC-cceEEECCeecc-----eeeeeecC
Q psy10767 14 FGVTAYGLLGPSGCGKTTLLSCIVNRLRLD-HGSISLSARTVR-----DIGYMPQV 63 (149)
Q Consensus 14 ~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~-~G~i~~~g~~~~-----~i~~~~q~ 63 (149)
.++.+++|+|+||||||||.+.|.+.+.+. .|.+.+++.+++ .++|.+|+
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~~~~~~~~~~~~~ 77 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRHGLCSDLGFSDAD 77 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHhhhhhcCCcCccc
Confidence 578899999999999999999999977554 468999886653 25666665
No 482
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=98.48 E-value=5e-07 Score=73.11 Aligned_cols=36 Identities=25% Similarity=0.368 Sum_probs=28.9
Q ss_pred eCCcEEEEECCCCCCHHHHHHHHhcCccC-CcceEEE
Q psy10767 14 FGVTAYGLLGPSGCGKTTLLSCIVNRLRL-DHGSISL 49 (149)
Q Consensus 14 ~~g~~~~iiG~nGaGKSTLl~~i~g~~~~-~~G~i~~ 49 (149)
.++..+.|.||+||||||+++++.+.+.. ..+.|..
T Consensus 120 ~~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~t 156 (343)
T TIGR01420 120 RPRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIIT 156 (343)
T ss_pred hcCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEE
Confidence 46788999999999999999999987653 3455554
No 483
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.48 E-value=6e-08 Score=77.78 Aligned_cols=41 Identities=20% Similarity=0.251 Sum_probs=36.5
Q ss_pred eCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec
Q psy10767 14 FGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV 54 (149)
Q Consensus 14 ~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~ 54 (149)
.++++++++|||||||||++..|++.+.+..++|.+.+.+.
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~ 152 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDT 152 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCc
Confidence 57899999999999999999999999998888998866553
No 484
>PRK01156 chromosome segregation protein; Provisional
Probab=98.47 E-value=1.1e-07 Score=85.14 Aligned_cols=37 Identities=43% Similarity=0.565 Sum_probs=31.1
Q ss_pred CCCChhHHHHHHH------HHHHhcCCCEEEEcCCCCCCCcCC
Q psy10767 110 ESAFGGQQRRVSF------AVSLIHDPKILILDEPTVGLDPVL 146 (149)
Q Consensus 110 ~~~sgGqkqrv~i------aral~~~p~illlDEPt~gLD~~~ 146 (149)
..+||||++|++| ||+++.+|++++|||||++||+..
T Consensus 800 ~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~ 842 (895)
T PRK01156 800 DSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDR 842 (895)
T ss_pred ccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHH
Confidence 3468999999875 488889999999999999999864
No 485
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=98.47 E-value=1.8e-07 Score=68.45 Aligned_cols=33 Identities=36% Similarity=0.470 Sum_probs=27.1
Q ss_pred CcEEEEECCCCCCHHHHHHHHhcCccCCcceEEE
Q psy10767 16 VTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISL 49 (149)
Q Consensus 16 g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~ 49 (149)
|++++|+||||||||||++.|++.+.+. |.+.+
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~~~~-~~~~~ 33 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLAGD-PRVHF 33 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCcC-CcEEE
Confidence 5789999999999999999999987543 54443
No 486
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.45 E-value=1e-07 Score=86.48 Aligned_cols=30 Identities=23% Similarity=0.607 Sum_probs=17.9
Q ss_pred eEEEeCCcEEEEECCCCCCHHHHHHH---HhcCc
Q psy10767 10 NTVIFGVTAYGLLGPSGCGKTTLLSC---IVNRL 40 (149)
Q Consensus 10 ~~~~~~g~~~~iiG~nGaGKSTLl~~---i~g~~ 40 (149)
.+.+. +.+++|+|||||||||++.+ ++|..
T Consensus 18 ~i~f~-~~~~~i~G~NGsGKS~ll~ai~~~lg~~ 50 (1179)
T TIGR02168 18 TINFD-KGITGIVGPNGCGKSNIVDAIRWVLGEQ 50 (1179)
T ss_pred eEEec-CCcEEEECCCCCChhHHHHHHHHHHcCC
Confidence 34433 33677777777777777744 45543
No 487
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=98.45 E-value=2.1e-07 Score=77.32 Aligned_cols=38 Identities=24% Similarity=0.347 Sum_probs=33.7
Q ss_pred ceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCC
Q psy10767 5 SASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLD 43 (149)
Q Consensus 5 ~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~ 43 (149)
+++.+ +.+.+|+.++|+|+||+|||||+++|++...++
T Consensus 152 aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d 189 (444)
T PRK08972 152 AINAM-LTVGKGQRMGLFAGSGVGKSVLLGMMTRGTTAD 189 (444)
T ss_pred eecce-EEEcCCCEEEEECCCCCChhHHHHHhccCCCCC
Confidence 34444 999999999999999999999999999988764
No 488
>PRK03918 chromosome segregation protein; Provisional
Probab=98.45 E-value=9.9e-08 Score=85.14 Aligned_cols=35 Identities=37% Similarity=0.493 Sum_probs=20.9
Q ss_pred CChhHHH------HHHHHHHHhcCCCEEEEcCCCCCCCcCC
Q psy10767 112 AFGGQQR------RVSFAVSLIHDPKILILDEPTVGLDPVL 146 (149)
Q Consensus 112 ~sgGqkq------rv~iaral~~~p~illlDEPt~gLD~~~ 146 (149)
+||||+| |++||++++.+|+++||||||++||+..
T Consensus 789 lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~ 829 (880)
T PRK03918 789 LSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEER 829 (880)
T ss_pred CCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHH
Confidence 3666666 3334445556666666666666666643
No 489
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=98.44 E-value=3.3e-07 Score=66.02 Aligned_cols=35 Identities=23% Similarity=0.372 Sum_probs=29.3
Q ss_pred EEEEECCCCCCHHHHHHHHhcC----ccCCcc----eEEECCe
Q psy10767 18 AYGLLGPSGCGKTTLLSCIVNR----LRLDHG----SISLSAR 52 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i~g~----~~~~~G----~i~~~g~ 52 (149)
.++|+|++|||||||++.+.|. +.|+.| .+.+++.
T Consensus 16 ~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g~~~~~i~~~~~ 58 (173)
T cd04155 16 RILILGLDNAGKTTILKQLASEDISHITPTQGFNIKTVQSDGF 58 (173)
T ss_pred EEEEEccCCCCHHHHHHHHhcCCCcccCCCCCcceEEEEECCE
Confidence 4899999999999999999997 557777 6666554
No 490
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=98.44 E-value=2.1e-07 Score=68.32 Aligned_cols=34 Identities=29% Similarity=0.364 Sum_probs=26.9
Q ss_pred eecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCc
Q psy10767 6 ASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRL 40 (149)
Q Consensus 6 ~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~ 40 (149)
++++++.+.+| +.+|+||||+||||++.+|.-.+
T Consensus 10 ~~~~~i~f~~g-~~vi~G~Ng~GKStil~ai~~~L 43 (202)
T PF13476_consen 10 FKDLEIDFSPG-LNVIYGPNGSGKSTILEAIRYAL 43 (202)
T ss_dssp EEEEEEE--SE-EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcceEEEcCCC-cEEEECCCCCCHHHHHHHHHHHH
Confidence 46778888665 99999999999999999985543
No 491
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=98.43 E-value=2e-07 Score=73.32 Aligned_cols=32 Identities=31% Similarity=0.527 Sum_probs=27.8
Q ss_pred EEEEECCCCCCHHHHHHHHhcCccCCcceEEE
Q psy10767 18 AYGLLGPSGCGKTTLLSCIVNRLRLDHGSISL 49 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~ 49 (149)
++||+|+||||||||+++|++++.+..|.+..
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~vi~ 32 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVIC 32 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCCCceEEEE
Confidence 47999999999999999999999887775444
No 492
>PRK06315 type III secretion system ATPase; Provisional
Probab=98.43 E-value=2.1e-07 Score=77.50 Aligned_cols=46 Identities=22% Similarity=0.336 Sum_probs=38.4
Q ss_pred ceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccC-CcceEEECC
Q psy10767 5 SASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRL-DHGSISLSA 51 (149)
Q Consensus 5 ~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~-~~G~i~~~g 51 (149)
+++++ |.+.+|+.++|+|+||||||||+++|+|..+. +.|.|.+.|
T Consensus 154 aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~~~vi~liG 200 (442)
T PRK06315 154 CIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIG 200 (442)
T ss_pred EEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccCCceEEEEEC
Confidence 56666 99999999999999999999999999998844 446666534
No 493
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.38 E-value=1.7e-07 Score=76.48 Aligned_cols=36 Identities=33% Similarity=0.423 Sum_probs=33.7
Q ss_pred CChhHHHHHHHHHHHhc---------CCCEEEEcCCCCCCCcCCC
Q psy10767 112 AFGGQQRRVSFAVSLIH---------DPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 112 ~sgGqkqrv~iaral~~---------~p~illlDEPt~gLD~~~~ 147 (149)
+|.||+|+++||++|+. +|+|+|||||+++||+..+
T Consensus 276 ~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r 320 (365)
T TIGR00611 276 ASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRR 320 (365)
T ss_pred cChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHH
Confidence 58999999999999999 9999999999999998654
No 494
>PRK06936 type III secretion system ATPase; Provisional
Probab=98.38 E-value=4.2e-07 Score=75.57 Aligned_cols=38 Identities=24% Similarity=0.380 Sum_probs=36.0
Q ss_pred ceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCC
Q psy10767 5 SASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLD 43 (149)
Q Consensus 5 ~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~ 43 (149)
+++++ +.+.+|+.++|+|+||||||||+++|++...++
T Consensus 152 vid~l-~~i~~Gq~~~I~G~sG~GKStLl~~Ia~~~~~d 189 (439)
T PRK06936 152 VIDGL-LTCGEGQRMGIFAAAGGGKSTLLASLIRSAEVD 189 (439)
T ss_pred eeeee-EEecCCCEEEEECCCCCChHHHHHHHhcCCCCC
Confidence 67888 999999999999999999999999999999876
No 495
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=98.38 E-value=3.3e-07 Score=66.95 Aligned_cols=26 Identities=31% Similarity=0.451 Sum_probs=24.0
Q ss_pred CcEEEEECCCCCCHHHHHHHHhcCcc
Q psy10767 16 VTAYGLLGPSGCGKTTLLSCIVNRLR 41 (149)
Q Consensus 16 g~~~~iiG~nGaGKSTLl~~i~g~~~ 41 (149)
|++++|+||||||||||++.|++..+
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~~ 26 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEEDP 26 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccCc
Confidence 68999999999999999999999763
No 496
>PRK00098 GTPase RsgA; Reviewed
Probab=98.36 E-value=4.5e-07 Score=72.02 Aligned_cols=35 Identities=40% Similarity=0.514 Sum_probs=32.8
Q ss_pred CCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEE
Q psy10767 15 GVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISL 49 (149)
Q Consensus 15 ~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~ 49 (149)
+|.+++++|+||+|||||+|.|.|...+..|+|..
T Consensus 163 ~gk~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~ 197 (298)
T PRK00098 163 AGKVTVLAGQSGVGKSTLLNALAPDLELKTGEISE 197 (298)
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcCCCCcceec
Confidence 57899999999999999999999999999999986
No 497
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.35 E-value=5.2e-07 Score=83.94 Aligned_cols=37 Identities=32% Similarity=0.409 Sum_probs=34.4
Q ss_pred CCChhHHH------HHHHHHHHhcCCCEEEEcCCCCCCCcCCC
Q psy10767 111 SAFGGQQR------RVSFAVSLIHDPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 111 ~~sgGqkq------rv~iaral~~~p~illlDEPt~gLD~~~~ 147 (149)
.+|+|||| |++|||+++.+|++|+|||||++||+..+
T Consensus 1199 ~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~ 1241 (1311)
T TIGR00606 1199 RCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENI 1241 (1311)
T ss_pred CCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHH
Confidence 46999999 99999999999999999999999998753
No 498
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.35 E-value=4e-07 Score=71.94 Aligned_cols=40 Identities=35% Similarity=0.488 Sum_probs=34.2
Q ss_pred ceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEE
Q psy10767 9 LNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISL 49 (149)
Q Consensus 9 i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~ 49 (149)
+...+. +.+++++|+||+|||||+|.|.|...+..|+|..
T Consensus 155 L~~~L~-~k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~ 194 (287)
T cd01854 155 LREYLK-GKTSVLVGQSGVGKSTLINALLPDLDLATGEISE 194 (287)
T ss_pred HHhhhc-cceEEEECCCCCCHHHHHHHHhchhhccccceec
Confidence 333444 4789999999999999999999999999999876
No 499
>PRK06820 type III secretion system ATPase; Validated
Probab=98.33 E-value=8.3e-07 Score=73.94 Aligned_cols=42 Identities=19% Similarity=0.244 Sum_probs=37.8
Q ss_pred ceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceE
Q psy10767 5 SASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSI 47 (149)
Q Consensus 5 ~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i 47 (149)
+++.+ +++.+|+.++|+|+||+|||||+++|++...++.+-+
T Consensus 153 aID~l-~~i~~Gqri~I~G~sG~GKStLl~~I~~~~~~dv~V~ 194 (440)
T PRK06820 153 AIDGI-LSCGEGQRIGIFAAAGVGKSTLLGMLCADSAADVMVL 194 (440)
T ss_pred eecce-EEecCCCEEEEECCCCCChHHHHHHHhccCCCCEEEE
Confidence 67788 9999999999999999999999999999988876433
No 500
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.32 E-value=4.6e-07 Score=76.71 Aligned_cols=50 Identities=24% Similarity=0.293 Sum_probs=44.1
Q ss_pred ceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec
Q psy10767 5 SASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV 54 (149)
Q Consensus 5 ~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~ 54 (149)
+.+.+++.+..|+.+.|+||||+|||||+++|.++++|.+|++.+....+
T Consensus 200 ~~~al~~aa~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i 249 (499)
T TIGR00368 200 AKRALEIAAAGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARI 249 (499)
T ss_pred HHhhhhhhccCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEecccc
Confidence 45678888999999999999999999999999999999999888865443
Done!