Query psy10767
Match_columns 149
No_of_seqs 160 out of 1827
Neff 8.1
Searched_HMMs 29240
Date Fri Aug 16 17:59:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10767.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10767hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tif_A Uncharacterized ABC tra 100.0 1.3E-42 4.5E-47 265.3 12.1 139 4-147 19-181 (235)
2 3fvq_A Fe(3+) IONS import ATP- 100.0 3.2E-42 1.1E-46 277.3 12.1 137 4-147 18-174 (359)
3 3tui_C Methionine import ATP-b 100.0 6.5E-42 2.2E-46 275.9 13.2 139 4-147 42-199 (366)
4 2pcj_A ABC transporter, lipopr 100.0 3.7E-42 1.3E-46 261.0 10.5 137 4-147 18-176 (224)
5 3gfo_A Cobalt import ATP-bindi 100.0 5.3E-42 1.8E-46 267.6 11.7 138 4-147 22-179 (275)
6 1sgw_A Putative ABC transporte 100.0 1.4E-41 4.7E-46 256.7 12.4 139 4-147 23-169 (214)
7 1ji0_A ABC transporter; ATP bi 100.0 2.9E-41 9.8E-46 258.5 14.0 139 4-147 20-175 (240)
8 1b0u_A Histidine permease; ABC 100.0 1.5E-41 5E-46 263.3 12.3 139 4-147 20-189 (262)
9 3rlf_A Maltose/maltodextrin im 100.0 1.1E-41 3.7E-46 276.0 11.6 137 4-147 17-169 (381)
10 2ff7_A Alpha-hemolysin translo 100.0 4.3E-41 1.5E-45 258.7 13.9 138 4-147 23-181 (247)
11 2olj_A Amino acid ABC transpor 100.0 1.4E-41 4.7E-46 263.7 11.0 139 4-147 38-195 (263)
12 4g1u_C Hemin import ATP-bindin 100.0 3.2E-41 1.1E-45 262.0 12.2 137 4-147 25-183 (266)
13 1g6h_A High-affinity branched- 100.0 3.4E-41 1.2E-45 260.4 12.3 137 4-147 21-189 (257)
14 1vpl_A ABC transporter, ATP-bi 100.0 5.3E-41 1.8E-45 259.5 12.1 137 4-147 29-182 (256)
15 1mv5_A LMRA, multidrug resista 100.0 1.1E-40 3.9E-45 255.5 13.9 139 4-148 16-176 (243)
16 1z47_A CYSA, putative ABC-tran 100.0 4.5E-41 1.6E-45 270.3 11.9 137 4-147 29-181 (355)
17 2yyz_A Sugar ABC transporter, 100.0 7.5E-41 2.6E-45 269.5 12.1 137 4-147 17-169 (359)
18 1v43_A Sugar-binding transport 100.0 1E-40 3.4E-45 269.8 12.1 139 4-147 25-177 (372)
19 2it1_A 362AA long hypothetical 100.0 7.2E-41 2.5E-45 269.9 11.1 137 4-147 17-169 (362)
20 1oxx_K GLCV, glucose, ABC tran 100.0 9.2E-41 3.1E-45 268.5 11.5 137 5-148 20-177 (353)
21 2yz2_A Putative ABC transporte 100.0 3E-40 1E-44 256.3 13.5 140 4-147 21-174 (266)
22 1g29_1 MALK, maltose transport 100.0 1.6E-40 5.4E-45 268.7 12.3 137 4-147 17-175 (372)
23 2onk_A Molybdate/tungstate ABC 100.0 1E-40 3.5E-45 255.7 10.4 135 5-147 14-162 (240)
24 3d31_A Sulfate/molybdate ABC t 100.0 1.3E-40 4.4E-45 267.2 11.0 135 5-147 15-163 (348)
25 3nh6_A ATP-binding cassette SU 100.0 3.5E-40 1.2E-44 260.7 12.5 138 4-147 68-226 (306)
26 2ihy_A ABC transporter, ATP-bi 100.0 1.9E-40 6.6E-45 259.2 10.4 139 4-147 35-197 (279)
27 2pze_A Cystic fibrosis transme 100.0 1.7E-39 5.7E-44 247.2 14.7 133 4-147 22-166 (229)
28 2ixe_A Antigen peptide transpo 100.0 1.3E-39 4.4E-44 253.5 13.9 136 4-147 33-192 (271)
29 2ghi_A Transport protein; mult 100.0 1.9E-39 6.6E-44 251.1 13.5 137 4-147 34-191 (260)
30 2qi9_C Vitamin B12 import ATP- 100.0 8.7E-40 3E-44 251.8 11.3 136 4-147 14-169 (249)
31 2d2e_A SUFC protein; ABC-ATPas 100.0 6.3E-40 2.2E-44 252.4 10.1 139 4-147 17-179 (250)
32 2cbz_A Multidrug resistance-as 100.0 2.1E-39 7.1E-44 247.8 12.6 134 4-147 19-163 (237)
33 2nq2_C Hypothetical ABC transp 100.0 1.9E-39 6.5E-44 250.3 12.1 133 4-147 19-164 (253)
34 2zu0_C Probable ATP-dependent 100.0 2.3E-39 8E-44 251.5 11.3 139 4-147 34-200 (267)
35 2pjz_A Hypothetical protein ST 100.0 5.2E-39 1.8E-43 249.2 10.8 133 4-147 19-164 (263)
36 2bbs_A Cystic fibrosis transme 100.0 2.7E-38 9.2E-43 248.3 12.5 132 4-147 52-195 (290)
37 3gd7_A Fusion complex of cysti 100.0 1.5E-38 5.2E-43 258.5 9.8 136 4-147 35-191 (390)
38 3b5x_A Lipid A export ATP-bind 100.0 1.9E-37 6.5E-42 262.6 13.4 138 4-147 357-516 (582)
39 3b60_A Lipid A export ATP-bind 100.0 1.6E-37 5.6E-42 263.0 12.6 138 4-147 357-516 (582)
40 4a82_A Cystic fibrosis transme 100.0 2.7E-37 9.2E-42 261.6 13.6 138 4-147 355-513 (578)
41 2yl4_A ATP-binding cassette SU 100.0 2.1E-37 7.3E-42 262.9 12.8 138 4-147 358-519 (595)
42 3qf4_B Uncharacterized ABC tra 100.0 5.1E-37 1.7E-41 260.8 12.5 138 4-147 369-527 (598)
43 3qf4_A ABC transporter, ATP-bi 100.0 8.4E-37 2.9E-41 259.1 13.2 138 4-147 357-515 (587)
44 3ozx_A RNAse L inhibitor; ATP 100.0 2.4E-34 8.1E-39 242.0 11.4 134 4-147 282-421 (538)
45 4f4c_A Multidrug resistance pr 100.0 5.1E-34 1.7E-38 259.4 13.6 137 4-146 1093-1252(1321)
46 3g5u_A MCG1178, multidrug resi 100.0 5.1E-34 1.8E-38 258.8 13.6 137 4-146 404-561 (1284)
47 4f4c_A Multidrug resistance pr 100.0 8.7E-34 3E-38 257.9 14.8 137 4-146 432-589 (1321)
48 3bk7_A ABC transporter ATP-bin 100.0 5.5E-34 1.9E-38 242.7 9.3 133 4-147 370-507 (607)
49 1yqt_A RNAse L inhibitor; ATP- 100.0 5.5E-34 1.9E-38 239.8 9.1 133 4-147 300-437 (538)
50 3g5u_A MCG1178, multidrug resi 100.0 3.3E-33 1.1E-37 253.6 13.1 138 4-147 1047-1207(1284)
51 1yqt_A RNAse L inhibitor; ATP- 100.0 3.5E-33 1.2E-37 235.0 7.1 136 4-147 36-194 (538)
52 3bk7_A ABC transporter ATP-bin 100.0 6.5E-33 2.2E-37 236.1 7.6 136 4-147 106-264 (607)
53 3j16_B RLI1P; ribosome recycli 100.0 9.8E-32 3.4E-36 228.8 11.1 132 5-147 362-503 (608)
54 2iw3_A Elongation factor 3A; a 100.0 2.3E-31 7.8E-36 235.2 8.3 59 4-64 687-745 (986)
55 3ozx_A RNAse L inhibitor; ATP 100.0 3.3E-31 1.1E-35 222.9 7.7 130 14-147 23-174 (538)
56 3ux8_A Excinuclease ABC, A sub 100.0 1.1E-30 3.8E-35 224.2 8.4 142 4-147 32-240 (670)
57 3j16_B RLI1P; ribosome recycli 100.0 9.8E-31 3.3E-35 222.6 7.6 140 4-147 92-257 (608)
58 2iw3_A Elongation factor 3A; a 100.0 1.9E-29 6.5E-34 223.0 10.7 129 4-147 449-584 (986)
59 3ux8_A Excinuclease ABC, A sub 99.9 2.5E-28 8.5E-33 209.6 8.9 37 111-147 543-582 (670)
60 2npi_A Protein CLP1; CLP1-PCF1 99.9 3.7E-30 1.3E-34 213.0 -5.9 136 6-145 128-276 (460)
61 4aby_A DNA repair protein RECN 99.9 3E-27 1E-31 191.7 7.2 60 5-65 50-157 (415)
62 3b85_A Phosphate starvation-in 99.9 1.1E-28 3.9E-33 185.1 -5.1 114 5-141 15-134 (208)
63 1tq4_A IIGP1, interferon-induc 99.9 2E-28 6.7E-33 200.3 -5.0 133 4-147 37-202 (413)
64 4gp7_A Metallophosphoesterase; 99.9 8.2E-28 2.8E-32 174.6 -2.6 115 8-145 1-117 (171)
65 3pih_A Uvrabc system protein A 99.9 2.2E-24 7.7E-29 190.0 12.0 38 110-147 804-844 (916)
66 2r6f_A Excinuclease ABC subuni 99.9 4E-25 1.4E-29 194.7 5.4 37 111-147 845-884 (972)
67 2vf7_A UVRA2, excinuclease ABC 99.9 6.3E-25 2.1E-29 192.2 6.4 38 110-147 729-769 (842)
68 2ygr_A Uvrabc system protein A 99.9 3.1E-24 1.1E-28 189.5 8.4 38 110-147 862-902 (993)
69 1z6g_A Guanylate kinase; struc 99.9 1.5E-27 5E-32 179.6 -11.2 131 5-146 12-162 (218)
70 3sop_A Neuronal-specific septi 99.9 3.3E-26 1.1E-30 177.7 -5.7 119 19-145 5-129 (270)
71 3aez_A Pantothenate kinase; tr 99.9 6.6E-26 2.3E-30 179.3 -5.2 116 13-144 87-209 (312)
72 3b9q_A Chloroplast SRP recepto 99.9 1.2E-25 4.1E-30 177.1 -4.1 127 7-146 91-237 (302)
73 3qf7_A RAD50; ABC-ATPase, ATPa 99.9 1.7E-23 6E-28 168.4 6.6 37 111-147 279-321 (365)
74 1ye8_A Protein THEP1, hypothet 99.9 3.6E-24 1.2E-28 156.9 1.7 101 18-146 2-118 (178)
75 2og2_A Putative signal recogni 99.9 1.2E-24 4.2E-29 175.0 -3.0 127 7-146 148-294 (359)
76 1e69_A Chromosome segregation 99.9 2.6E-22 9.1E-27 158.7 8.8 37 111-147 219-259 (322)
77 2v9p_A Replication protein E1; 99.9 2.2E-24 7.5E-29 170.2 -3.5 117 4-148 114-230 (305)
78 2pt7_A CAG-ALFA; ATPase, prote 99.9 3E-23 1E-27 165.2 3.0 92 5-140 160-251 (330)
79 2jeo_A Uridine-cytidine kinase 99.8 1.5E-21 5E-26 148.7 -0.1 127 4-144 13-148 (245)
80 2eyu_A Twitching motility prot 99.8 3.4E-20 1.1E-24 143.2 3.4 96 4-145 15-111 (261)
81 1znw_A Guanylate kinase, GMP k 99.8 7.8E-21 2.7E-25 141.2 -4.8 62 2-65 8-74 (207)
82 2dpy_A FLII, flagellum-specifi 99.7 1.5E-19 5E-24 148.8 -0.1 121 5-147 147-284 (438)
83 2qnr_A Septin-2, protein NEDD5 99.7 3.5E-20 1.2E-24 145.7 -4.4 125 4-145 12-144 (301)
84 1ewq_A DNA mismatch repair pro 99.7 8E-19 2.7E-23 152.7 3.7 104 3-146 566-675 (765)
85 1rj9_A FTSY, signal recognitio 99.7 2.1E-19 7.1E-24 141.6 -1.1 117 15-142 101-234 (304)
86 2o5v_A DNA replication and rep 99.7 8.3E-18 2.8E-22 135.2 8.0 36 112-147 266-310 (359)
87 3thx_B DNA mismatch repair pro 99.7 1.1E-18 3.9E-23 154.0 2.9 107 3-146 660-769 (918)
88 3thx_A DNA mismatch repair pro 99.7 1.8E-18 6.2E-23 153.0 3.9 100 3-146 649-758 (934)
89 1tf7_A KAIC; homohexamer, hexa 99.7 2.9E-18 9.9E-23 143.5 4.1 112 10-145 275-386 (525)
90 3qkt_A DNA double-strand break 99.7 2.4E-17 8.2E-22 131.1 9.1 37 111-147 248-290 (339)
91 1cr0_A DNA primase/helicase; R 99.7 1.2E-18 4E-23 135.6 0.5 47 4-50 23-70 (296)
92 2i3b_A HCR-ntpase, human cance 99.7 2.9E-19 9.8E-24 132.1 -3.1 110 16-145 1-123 (189)
93 3asz_A Uridine kinase; cytidin 99.7 9E-20 3.1E-24 135.1 -6.7 117 13-145 3-134 (211)
94 2o8b_B DNA mismatch repair pro 99.7 6.2E-18 2.1E-22 150.8 3.7 109 3-146 769-885 (1022)
95 4a74_A DNA repair and recombin 99.7 1.5E-18 5.2E-23 129.2 -0.4 31 12-42 21-51 (231)
96 1pzn_A RAD51, DNA repair and r 99.7 2.1E-18 7.3E-23 138.0 -0.2 111 5-145 119-247 (349)
97 2ehv_A Hypothetical protein PH 99.7 5.8E-18 2E-22 127.4 -0.0 42 12-53 26-69 (251)
98 1tf7_A KAIC; homohexamer, hexa 99.7 2.9E-18 9.9E-23 143.5 -2.7 61 4-64 26-97 (525)
99 1pui_A ENGB, probable GTP-bind 99.7 7.3E-18 2.5E-22 123.9 -0.5 138 5-147 17-186 (210)
100 3szr_A Interferon-induced GTP- 99.6 3.2E-18 1.1E-22 145.7 -3.7 104 19-147 48-170 (608)
101 2qag_C Septin-7; cell cycle, c 99.6 1.6E-17 5.5E-22 135.9 0.3 123 4-145 25-156 (418)
102 2obl_A ESCN; ATPase, hydrolase 99.6 7.3E-17 2.5E-21 129.2 3.6 48 5-53 61-108 (347)
103 3jvv_A Twitching mobility prot 99.6 7E-17 2.4E-21 129.7 2.7 38 12-49 119-157 (356)
104 1lw7_A Transcriptional regulat 99.6 2.1E-18 7E-23 138.4 -6.3 45 6-50 158-208 (365)
105 1htw_A HI0065; nucleotide-bind 99.6 4.9E-17 1.7E-21 116.9 -0.0 60 4-64 21-84 (158)
106 1wb9_A DNA mismatch repair pro 99.6 4.4E-16 1.5E-20 136.1 4.9 108 3-146 595-703 (800)
107 1nlf_A Regulatory protein REPA 99.6 1.3E-15 4.4E-20 117.6 6.6 120 12-145 26-151 (279)
108 2gza_A Type IV secretion syste 99.6 5.6E-16 1.9E-20 124.4 4.2 91 6-140 165-263 (361)
109 2w0m_A SSO2452; RECA, SSPF, un 99.6 3.1E-16 1.1E-20 116.4 2.4 117 5-145 11-141 (235)
110 2f1r_A Molybdopterin-guanine d 99.6 3.2E-18 1.1E-22 124.6 -8.4 103 17-133 3-125 (171)
111 2bbw_A Adenylate kinase 4, AK4 99.6 1.2E-17 4.2E-22 126.8 -6.0 38 15-52 26-66 (246)
112 2ewv_A Twitching motility prot 99.6 8.5E-16 2.9E-20 123.9 3.7 46 5-52 127-173 (372)
113 1zp6_A Hypothetical protein AT 99.6 3.9E-17 1.3E-21 118.8 -4.1 41 12-54 5-45 (191)
114 2rcn_A Probable GTPase ENGC; Y 99.6 7.9E-16 2.7E-20 123.6 3.1 116 5-128 205-330 (358)
115 3c8u_A Fructokinase; YP_612366 99.5 4.3E-17 1.5E-21 121.0 -6.2 39 13-51 19-60 (208)
116 2yhs_A FTSY, cell division pro 99.5 2.7E-16 9.1E-21 130.8 -3.1 48 6-53 283-330 (503)
117 1p9r_A General secretion pathw 99.5 1.6E-16 5.5E-21 130.0 -5.3 41 14-54 165-205 (418)
118 1odf_A YGR205W, hypothetical 3 99.5 1.6E-16 5.6E-21 124.3 -5.1 121 13-146 28-169 (290)
119 3euj_A Chromosome partition pr 99.5 6.3E-15 2.2E-19 122.4 2.6 49 5-54 19-67 (483)
120 2qag_B Septin-6, protein NEDD5 99.5 1.2E-14 4.2E-19 119.0 3.7 58 6-65 30-92 (427)
121 2yv5_A YJEQ protein; hydrolase 99.5 7.7E-15 2.6E-19 115.2 1.9 55 12-67 161-227 (302)
122 2cvh_A DNA repair and recombin 99.5 7.1E-14 2.4E-18 103.1 6.6 110 5-145 8-121 (220)
123 1f2t_B RAD50 ABC-ATPase; DNA d 99.4 2.7E-14 9.4E-19 101.6 3.1 37 111-147 57-99 (148)
124 1udx_A The GTP-binding protein 99.4 1.4E-14 4.6E-19 118.5 1.6 122 6-146 147-283 (416)
125 2x8a_A Nuclear valosin-contain 99.4 4.8E-17 1.7E-21 126.1 -12.6 121 5-140 35-164 (274)
126 1vma_A Cell division protein F 99.4 3.3E-14 1.1E-18 112.0 3.1 99 8-140 96-197 (306)
127 3e70_C DPA, signal recognition 99.4 1E-13 3.4E-18 110.2 4.4 42 13-54 126-167 (328)
128 1nij_A Hypothetical protein YJ 99.4 2.7E-16 9.3E-21 124.2 -11.3 39 16-54 4-50 (318)
129 3pih_A Uvrabc system protein A 99.4 1.4E-13 4.7E-18 121.7 2.5 37 111-147 464-502 (916)
130 1ls1_A Signal recognition part 99.4 4.3E-13 1.5E-17 105.0 5.1 105 7-144 91-196 (295)
131 2qm8_A GTPase/ATPase; G protei 99.3 7.1E-14 2.4E-18 111.3 -0.2 62 4-65 43-117 (337)
132 1s96_A Guanylate kinase, GMP k 99.3 2.1E-13 7.2E-18 102.6 2.1 63 2-64 2-71 (219)
133 2kjq_A DNAA-related protein; s 99.3 1E-12 3.6E-17 93.1 3.9 30 15-45 35-64 (149)
134 2bdt_A BH3686; alpha-beta prot 99.3 3.5E-16 1.2E-20 113.9 -15.0 44 16-62 2-48 (189)
135 3ec2_A DNA replication protein 99.3 1.3E-13 4.5E-18 99.6 -1.3 36 10-45 32-67 (180)
136 1u0l_A Probable GTPase ENGC; p 99.3 8.8E-13 3E-17 103.3 2.9 55 11-65 164-230 (301)
137 3tr0_A Guanylate kinase, GMP k 99.3 1.6E-12 5.6E-17 95.0 4.0 52 10-65 1-61 (205)
138 3lnc_A Guanylate kinase, GMP k 99.3 9.1E-13 3.1E-17 98.8 2.4 36 5-40 16-52 (231)
139 1n0w_A DNA repair protein RAD5 99.3 8.9E-12 3E-16 93.1 7.8 41 12-52 20-67 (243)
140 3kta_B Chromosome segregation 99.3 2.4E-12 8.2E-17 93.7 4.3 37 111-147 64-104 (173)
141 1sq5_A Pantothenate kinase; P- 99.2 7.4E-13 2.5E-17 103.9 0.2 40 14-53 78-122 (308)
142 1qhl_A Protein (cell division 99.2 1.4E-13 4.9E-18 104.2 -3.8 44 10-54 22-65 (227)
143 1iy2_A ATP-dependent metallopr 99.2 2.2E-14 7.7E-19 110.5 -9.1 121 5-139 64-195 (278)
144 1oix_A RAS-related protein RAB 99.2 1E-11 3.6E-16 90.3 5.1 37 18-54 31-78 (191)
145 1sxj_E Activator 1 40 kDa subu 99.2 1.1E-11 3.8E-16 97.7 5.6 46 18-63 38-91 (354)
146 1ixz_A ATP-dependent metallopr 99.2 3.1E-14 1E-18 108.1 -9.3 45 5-53 40-84 (254)
147 2oap_1 GSPE-2, type II secreti 99.1 4.7E-12 1.6E-16 105.9 0.7 50 4-53 248-297 (511)
148 1t9h_A YLOQ, probable GTPase E 99.1 6.6E-12 2.3E-16 98.9 0.4 57 11-67 168-235 (307)
149 4ad8_A DNA repair protein RECN 99.1 2.9E-11 9.9E-16 100.9 4.2 35 113-147 399-435 (517)
150 2px0_A Flagellar biosynthesis 99.1 2.5E-10 8.7E-15 89.3 8.0 32 14-45 103-134 (296)
151 2r6f_A Excinuclease ABC subuni 99.1 5.3E-11 1.8E-15 105.4 4.3 37 111-147 504-542 (972)
152 2vf7_A UVRA2, excinuclease ABC 99.1 5.6E-11 1.9E-15 104.4 3.9 37 111-147 379-417 (842)
153 1lvg_A Guanylate kinase, GMP k 99.1 3.2E-11 1.1E-15 88.8 1.9 28 14-41 2-29 (198)
154 3a00_A Guanylate kinase, GMP k 99.1 3.8E-11 1.3E-15 87.3 2.1 26 16-41 1-26 (186)
155 3lda_A DNA repair protein RAD5 99.1 2.3E-10 8E-15 93.0 6.9 41 12-52 174-221 (400)
156 2ygr_A Uvrabc system protein A 99.1 8.1E-11 2.8E-15 104.5 4.3 36 111-146 521-558 (993)
157 1in4_A RUVB, holliday junction 99.0 2.7E-13 9.3E-18 107.3 -10.7 60 5-64 33-112 (334)
158 2f9l_A RAB11B, member RAS onco 99.0 4.6E-10 1.6E-14 81.7 5.7 37 18-54 7-54 (199)
159 3kta_A Chromosome segregation 99.0 2.7E-10 9.2E-15 81.9 3.7 39 7-46 18-56 (182)
160 4e22_A Cytidylate kinase; P-lo 99.0 7.8E-11 2.7E-15 89.8 0.5 50 14-63 25-95 (252)
161 2j41_A Guanylate kinase; GMP, 98.9 4.3E-10 1.5E-14 82.0 3.9 35 11-45 1-35 (207)
162 3k1j_A LON protease, ATP-depen 98.9 1.5E-11 5.2E-16 104.4 -4.7 59 5-63 49-112 (604)
163 1w1w_A Structural maintenance 98.9 3.1E-10 1E-14 92.6 3.2 36 112-147 334-373 (430)
164 3auy_A DNA double-strand break 98.9 4.3E-10 1.5E-14 90.2 3.1 37 111-147 280-323 (371)
165 3uie_A Adenylyl-sulfate kinase 98.9 1.5E-10 5.3E-15 84.9 0.4 44 10-54 19-64 (200)
166 4eun_A Thermoresistant glucoki 98.9 5.5E-10 1.9E-14 81.9 2.7 49 11-63 24-80 (200)
167 3vaa_A Shikimate kinase, SK; s 98.9 1.2E-09 4E-14 80.1 3.5 38 3-40 12-49 (199)
168 1kgd_A CASK, peripheral plasma 98.8 8.6E-10 2.9E-14 79.7 2.3 36 14-49 3-39 (180)
169 2vp4_A Deoxynucleoside kinase; 98.8 2E-09 6.9E-14 80.7 2.7 42 8-53 12-53 (230)
170 2dhr_A FTSH; AAA+ protein, hex 98.8 6.3E-11 2.1E-15 98.8 -6.2 46 5-54 55-100 (499)
171 1rz3_A Hypothetical protein rb 98.8 1.6E-09 5.4E-14 79.6 1.7 41 12-52 18-58 (201)
172 1zu4_A FTSY; GTPase, signal re 98.7 1.9E-09 6.6E-14 85.2 1.4 48 7-54 96-143 (320)
173 3ney_A 55 kDa erythrocyte memb 98.7 4.8E-09 1.6E-13 77.7 3.2 32 10-41 13-44 (197)
174 1ni3_A YCHF GTPase, YCHF GTP-b 98.7 8.9E-09 3.1E-13 83.5 4.6 40 12-51 16-67 (392)
175 3tqc_A Pantothenate kinase; bi 98.7 1.5E-09 5E-14 86.0 -0.1 45 5-49 75-127 (321)
176 3tau_A Guanylate kinase, GMP k 98.7 1.2E-08 4E-13 75.4 3.8 29 14-42 6-34 (208)
177 1knq_A Gluconate kinase; ALFA/ 98.7 8E-09 2.7E-13 73.7 2.6 37 14-54 6-42 (175)
178 3cr8_A Sulfate adenylyltranfer 98.7 5.5E-09 1.9E-13 88.1 1.9 43 12-54 365-409 (552)
179 3nwj_A ATSK2; P loop, shikimat 98.6 2.7E-09 9.3E-14 81.6 -0.6 37 4-40 33-72 (250)
180 2ius_A DNA translocase FTSK; n 98.6 1.4E-09 4.6E-14 91.0 -3.3 49 7-55 158-208 (512)
181 2zr9_A Protein RECA, recombina 98.6 3.1E-08 1.1E-12 79.1 4.6 35 12-46 57-91 (349)
182 1svm_A Large T antigen; AAA+ f 98.6 8.2E-09 2.8E-13 83.3 1.2 43 4-49 157-199 (377)
183 1w1w_A Structural maintenance 98.6 2.4E-08 8.1E-13 81.3 3.5 34 11-44 21-54 (430)
184 2qt1_A Nicotinamide riboside k 98.6 4.9E-08 1.7E-12 71.5 4.5 31 11-41 16-46 (207)
185 2p67_A LAO/AO transport system 98.5 1E-08 3.5E-13 81.4 0.1 48 5-52 45-92 (341)
186 1kag_A SKI, shikimate kinase I 98.5 4.4E-08 1.5E-12 69.5 2.6 28 15-42 3-30 (173)
187 2www_A Methylmalonic aciduria 98.4 5.5E-08 1.9E-12 77.5 2.3 39 15-53 73-111 (349)
188 1cke_A CK, MSSA, protein (cyti 98.4 3.2E-08 1.1E-12 73.1 0.5 34 16-49 5-41 (227)
189 3m6a_A ATP-dependent protease 98.4 3.4E-08 1.2E-12 83.0 0.7 46 5-51 98-143 (543)
190 1f2t_A RAD50 ABC-ATPase; DNA d 98.4 1.5E-07 5.2E-12 66.3 3.9 30 7-37 15-44 (149)
191 2ce7_A Cell division protein F 98.4 1.4E-07 4.9E-12 78.2 3.6 33 6-40 41-73 (476)
192 4eaq_A DTMP kinase, thymidylat 98.4 1.5E-07 5.3E-12 70.7 3.4 46 3-49 10-58 (229)
193 2pez_A Bifunctional 3'-phospho 98.4 1E-07 3.6E-12 68.2 2.2 39 14-53 3-43 (179)
194 2r6a_A DNAB helicase, replicat 98.4 7.1E-08 2.4E-12 79.2 1.3 45 5-49 192-237 (454)
195 4a1f_A DNAB helicase, replicat 98.4 5.2E-07 1.8E-11 71.8 6.1 106 6-143 36-141 (338)
196 4ad8_A DNA repair protein RECN 98.4 7.6E-08 2.6E-12 80.2 1.3 34 5-39 50-83 (517)
197 2ffh_A Protein (FFH); SRP54, s 98.3 2.5E-07 8.5E-12 75.7 2.7 47 7-55 91-137 (425)
198 2dr3_A UPF0273 protein PH0284; 98.3 4.8E-07 1.6E-11 67.2 3.6 46 6-51 12-59 (247)
199 1m7g_A Adenylylsulfate kinase; 98.3 1.9E-07 6.4E-12 68.8 1.2 43 11-53 20-64 (211)
200 2xau_A PRE-mRNA-splicing facto 98.3 2.4E-08 8.3E-13 87.1 -4.2 32 113-144 192-224 (773)
201 1mky_A Probable GTP-binding pr 98.2 1E-06 3.5E-11 71.9 5.2 37 18-54 182-230 (439)
202 1jjv_A Dephospho-COA kinase; P 98.2 6.9E-07 2.4E-11 65.1 3.5 22 18-39 4-25 (206)
203 2qtf_A Protein HFLX, GTP-bindi 98.2 1.2E-06 4.2E-11 70.1 5.2 37 18-54 181-228 (364)
204 1j8m_F SRP54, signal recogniti 98.2 2.1E-07 7.1E-12 72.7 0.5 45 9-54 92-136 (297)
205 3qks_A DNA double-strand break 98.2 1E-06 3.4E-11 65.0 3.9 29 8-37 16-44 (203)
206 2gj8_A MNME, tRNA modification 98.2 1.7E-06 5.9E-11 61.3 4.8 27 14-40 2-28 (172)
207 3kl4_A SRP54, signal recogniti 98.2 1.5E-06 5E-11 71.3 4.9 38 15-52 96-133 (433)
208 1m2o_B GTP-binding protein SAR 98.2 1.6E-06 5.6E-11 62.4 4.6 47 5-52 13-67 (190)
209 2yvu_A Probable adenylyl-sulfa 98.2 8.5E-07 2.9E-11 63.7 2.8 37 12-48 9-45 (186)
210 3t34_A Dynamin-related protein 98.2 8.2E-07 2.8E-11 70.6 3.0 44 5-51 26-71 (360)
211 2e87_A Hypothetical protein PH 98.1 1.1E-06 3.8E-11 69.8 3.6 26 15-40 166-191 (357)
212 2if2_A Dephospho-COA kinase; a 98.1 1.1E-06 3.7E-11 63.9 2.9 21 18-38 3-23 (204)
213 2wji_A Ferrous iron transport 98.1 3.8E-06 1.3E-10 58.9 5.5 23 18-40 5-27 (165)
214 2wjg_A FEOB, ferrous iron tran 98.1 2.5E-06 8.4E-11 60.6 4.5 22 18-39 9-30 (188)
215 1y63_A LMAJ004144AAA protein; 98.1 1.4E-06 4.9E-11 62.7 3.3 32 8-39 2-33 (184)
216 3hr8_A Protein RECA; alpha and 98.1 1.2E-06 4.2E-11 70.1 2.9 40 13-52 58-98 (356)
217 2ohf_A Protein OLA1, GTP-bindi 98.1 1.9E-06 6.4E-11 70.0 3.9 41 12-52 18-69 (396)
218 1f6b_A SAR1; gtpases, N-termin 98.1 9.7E-07 3.3E-11 64.1 2.0 47 5-52 15-69 (198)
219 3bh0_A DNAB-like replicative h 98.1 8.4E-06 2.9E-10 63.8 6.8 35 6-40 58-92 (315)
220 2qor_A Guanylate kinase; phosp 98.0 2.4E-06 8.1E-11 62.5 3.1 29 12-40 8-36 (204)
221 3b9p_A CG5977-PA, isoform A; A 98.0 1E-05 3.4E-10 62.0 6.7 31 114-144 98-128 (297)
222 1ega_A Protein (GTP-binding pr 98.0 2.3E-06 8E-11 66.6 2.6 26 15-40 7-32 (301)
223 1np6_A Molybdopterin-guanine d 98.0 3.3E-06 1.1E-10 61.0 3.1 35 17-51 7-44 (174)
224 2ga8_A Hypothetical 39.9 kDa p 98.0 6.5E-07 2.2E-11 71.7 -0.7 39 2-40 8-48 (359)
225 1sxj_C Activator 1 40 kDa subu 98.0 6E-07 2.1E-11 70.6 -1.0 42 5-46 33-76 (340)
226 2zej_A Dardarin, leucine-rich 98.0 4.1E-06 1.4E-10 59.8 3.4 25 18-42 4-28 (184)
227 3t61_A Gluconokinase; PSI-biol 97.9 3.9E-06 1.3E-10 61.0 2.6 25 16-40 18-42 (202)
228 3cm0_A Adenylate kinase; ATP-b 97.9 6E-06 2.1E-10 58.9 3.2 25 14-38 2-26 (186)
229 1q3t_A Cytidylate kinase; nucl 97.9 8.4E-06 2.9E-10 60.8 3.4 37 11-47 11-50 (236)
230 2dy1_A Elongation factor G; tr 97.8 3.5E-06 1.2E-10 72.4 1.3 41 10-51 3-45 (665)
231 3auy_A DNA double-strand break 97.8 1.1E-05 3.9E-10 64.3 4.2 30 7-37 17-46 (371)
232 3r20_A Cytidylate kinase; stru 97.8 4.6E-06 1.6E-10 63.1 1.6 33 15-47 8-43 (233)
233 3kb2_A SPBC2 prophage-derived 97.8 1.1E-05 3.8E-10 56.5 3.4 23 18-40 3-25 (173)
234 3lxx_A GTPase IMAP family memb 97.8 1.4E-05 4.7E-10 59.6 3.9 28 18-45 31-58 (239)
235 1lv7_A FTSH; alpha/beta domain 97.8 8E-06 2.7E-10 61.5 2.4 43 7-53 38-80 (257)
236 2qag_A Septin-2, protein NEDD5 97.8 8.6E-06 2.9E-10 65.0 2.6 27 19-45 40-66 (361)
237 3ice_A Transcription terminati 97.8 8.2E-06 2.8E-10 66.3 2.2 34 8-41 166-199 (422)
238 2p5t_B PEZT; postsegregational 97.7 1.1E-05 3.7E-10 61.0 2.5 41 12-54 28-68 (253)
239 1qhx_A CPT, protein (chloramph 97.7 1.9E-05 6.5E-10 55.8 3.6 26 16-41 3-28 (178)
240 1jal_A YCHF protein; nucleotid 97.7 2.8E-05 9.6E-10 62.4 4.8 35 17-51 3-48 (363)
241 3lw7_A Adenylate kinase relate 97.7 1.9E-05 6.5E-10 55.0 3.3 19 18-36 3-21 (179)
242 1ypw_A Transitional endoplasmi 97.7 1.2E-05 4.1E-10 70.5 2.6 40 10-51 232-271 (806)
243 1kht_A Adenylate kinase; phosp 97.7 2.3E-05 8E-10 55.7 3.6 25 16-40 3-27 (192)
244 1gtv_A TMK, thymidylate kinase 97.7 5.2E-06 1.8E-10 60.4 0.0 26 18-43 2-27 (214)
245 1vht_A Dephospho-COA kinase; s 97.7 2.3E-05 7.9E-10 57.5 3.5 24 15-38 3-26 (218)
246 4ag6_A VIRB4 ATPase, type IV s 97.7 1.8E-05 6.2E-10 63.3 2.9 36 15-50 34-69 (392)
247 1uf9_A TT1252 protein; P-loop, 97.7 2.3E-05 7.7E-10 56.5 3.1 30 16-50 8-37 (203)
248 2jaq_A Deoxyguanosine kinase; 97.7 2.6E-05 9E-10 56.0 3.4 23 18-40 2-24 (205)
249 2ze6_A Isopentenyl transferase 97.7 2.3E-05 8E-10 59.4 3.2 23 18-40 3-25 (253)
250 2rhm_A Putative kinase; P-loop 97.7 2.7E-05 9.1E-10 55.6 3.2 27 14-40 3-29 (193)
251 3k53_A Ferrous iron transport 97.6 2.4E-05 8.3E-10 59.5 3.0 24 18-41 5-28 (271)
252 3ihw_A Centg3; RAS, centaurin, 97.6 7.6E-05 2.6E-09 53.3 5.4 35 18-52 22-65 (184)
253 1via_A Shikimate kinase; struc 97.6 3.4E-05 1.2E-09 54.7 3.2 23 18-40 6-28 (175)
254 1ly1_A Polynucleotide kinase; 97.6 3.9E-05 1.3E-09 54.0 3.5 22 17-38 3-24 (181)
255 1fzq_A ADP-ribosylation factor 97.6 4.3E-05 1.5E-09 54.3 3.7 23 18-40 18-40 (181)
256 1ex7_A Guanylate kinase; subst 97.6 3.5E-05 1.2E-09 56.3 3.2 22 19-40 4-25 (186)
257 2v54_A DTMP kinase, thymidylat 97.6 4.9E-05 1.7E-09 54.8 3.7 26 15-40 3-28 (204)
258 3trf_A Shikimate kinase, SK; a 97.6 4.7E-05 1.6E-09 54.2 3.6 25 16-40 5-29 (185)
259 3iij_A Coilin-interacting nucl 97.6 2.5E-05 8.5E-10 55.6 2.0 25 14-38 9-33 (180)
260 4fcw_A Chaperone protein CLPB; 97.6 4E-05 1.4E-09 58.8 3.3 32 17-48 48-79 (311)
261 2plr_A DTMP kinase, probable t 97.5 5.8E-05 2E-09 54.5 3.7 27 15-41 3-29 (213)
262 1xjc_A MOBB protein homolog; s 97.5 4E-05 1.4E-09 55.2 2.6 26 17-42 5-30 (169)
263 2wwf_A Thymidilate kinase, put 97.5 5.6E-05 1.9E-09 54.8 3.4 27 14-40 8-34 (212)
264 2c95_A Adenylate kinase 1; tra 97.5 5.3E-05 1.8E-09 54.2 3.2 27 14-40 7-33 (196)
265 1tev_A UMP-CMP kinase; ploop, 97.5 6.4E-05 2.2E-09 53.5 3.6 24 16-39 3-26 (196)
266 1gvn_B Zeta; postsegregational 97.5 5.2E-05 1.8E-09 58.6 3.3 36 14-51 31-66 (287)
267 3ake_A Cytidylate kinase; CMP 97.5 5.3E-05 1.8E-09 54.7 3.2 23 18-40 4-26 (208)
268 1nks_A Adenylate kinase; therm 97.5 5.7E-05 2E-09 53.6 3.1 24 18-41 3-26 (194)
269 3cf0_A Transitional endoplasmi 97.5 3.6E-05 1.2E-09 59.5 2.2 38 12-51 45-82 (301)
270 2z0h_A DTMP kinase, thymidylat 97.5 6.7E-05 2.3E-09 53.7 3.4 23 18-40 2-24 (197)
271 1nn5_A Similar to deoxythymidy 97.5 6.7E-05 2.3E-09 54.4 3.4 27 13-39 6-32 (215)
272 3b1v_A Ferrous iron uptake tra 97.5 7.2E-05 2.5E-09 57.4 3.6 23 18-40 5-27 (272)
273 2ged_A SR-beta, signal recogni 97.5 6.4E-05 2.2E-09 53.4 3.0 24 18-41 50-73 (193)
274 2bwj_A Adenylate kinase 5; pho 97.4 2.5E-05 8.6E-10 56.0 0.7 28 13-40 9-36 (199)
275 2nzj_A GTP-binding protein REM 97.4 9E-05 3.1E-09 51.5 3.3 23 18-40 6-28 (175)
276 3llm_A ATP-dependent RNA helic 97.4 6.4E-05 2.2E-09 56.0 2.5 26 13-38 73-98 (235)
277 3q72_A GTP-binding protein RAD 97.4 7.3E-05 2.5E-09 51.6 2.7 23 19-41 5-27 (166)
278 2erx_A GTP-binding protein DI- 97.4 9.9E-05 3.4E-09 50.9 3.3 22 18-39 5-26 (172)
279 1v5w_A DMC1, meiotic recombina 97.4 0.00013 4.3E-09 57.7 4.3 28 12-39 118-145 (343)
280 1z2a_A RAS-related protein RAB 97.4 8.5E-05 2.9E-09 51.2 2.9 23 18-40 7-29 (168)
281 2pbr_A DTMP kinase, thymidylat 97.4 0.00011 3.7E-09 52.3 3.4 23 18-40 2-24 (195)
282 3q85_A GTP-binding protein REM 97.4 0.00011 3.6E-09 50.9 3.3 22 19-40 5-26 (169)
283 3tw8_B RAS-related protein RAB 97.4 9.7E-05 3.3E-09 51.5 3.0 23 18-40 11-33 (181)
284 1kao_A RAP2A; GTP-binding prot 97.4 0.0001 3.4E-09 50.5 3.0 22 18-39 5-26 (167)
285 2vli_A Antibiotic resistance p 97.4 7.4E-05 2.5E-09 52.9 2.3 26 15-40 4-29 (183)
286 3fb4_A Adenylate kinase; psych 97.4 0.00011 3.9E-09 53.5 3.4 22 18-39 2-23 (216)
287 2ce2_X GTPase HRAS; signaling 97.4 8.8E-05 3E-09 50.7 2.6 22 19-40 6-27 (166)
288 1u8z_A RAS-related protein RAL 97.4 0.0001 3.5E-09 50.6 2.9 22 19-40 7-28 (168)
289 2dyk_A GTP-binding protein; GT 97.4 0.0001 3.6E-09 50.4 3.0 22 19-40 4-25 (161)
290 2w58_A DNAI, primosome compone 97.4 0.00012 3.9E-09 52.9 3.3 27 17-43 55-81 (202)
291 1ko7_A HPR kinase/phosphatase; 97.3 0.00022 7.7E-09 56.1 5.1 34 4-38 133-166 (314)
292 2qby_A CDC6 homolog 1, cell di 97.3 6.4E-05 2.2E-09 58.7 2.0 30 14-43 43-72 (386)
293 1z0j_A RAB-22, RAS-related pro 97.3 0.00011 3.7E-09 50.7 3.0 23 18-40 8-30 (170)
294 1e6c_A Shikimate kinase; phosp 97.3 0.0001 3.5E-09 51.7 2.9 22 18-39 4-25 (173)
295 1z08_A RAS-related protein RAB 97.3 0.00011 3.7E-09 50.8 3.0 23 18-40 8-30 (170)
296 2z43_A DNA repair and recombin 97.3 0.00017 5.9E-09 56.4 4.4 28 12-39 103-130 (324)
297 1fnn_A CDC6P, cell division co 97.3 0.00012 4.1E-09 57.5 3.5 26 18-43 46-71 (389)
298 1qf9_A UMP/CMP kinase, protein 97.3 0.00012 4E-09 52.0 3.1 24 16-39 6-29 (194)
299 1aky_A Adenylate kinase; ATP:A 97.3 0.00015 5E-09 53.2 3.7 26 15-40 3-28 (220)
300 1c1y_A RAS-related protein RAP 97.3 0.00011 3.9E-09 50.5 2.9 21 19-39 6-26 (167)
301 3lxw_A GTPase IMAP family memb 97.3 0.00012 4.1E-09 55.1 3.3 23 18-40 23-45 (247)
302 1ky3_A GTP-binding protein YPT 97.3 0.00012 3.9E-09 51.2 3.0 23 18-40 10-32 (182)
303 2pt5_A Shikimate kinase, SK; a 97.3 0.00014 4.9E-09 50.8 3.5 22 18-39 2-23 (168)
304 1svi_A GTP-binding protein YSX 97.3 0.0001 3.6E-09 52.3 2.8 23 18-40 25-47 (195)
305 1wms_A RAB-9, RAB9, RAS-relate 97.3 0.00012 4E-09 51.1 3.0 23 18-40 9-31 (177)
306 1ek0_A Protein (GTP-binding pr 97.3 0.00012 4E-09 50.5 2.9 22 19-40 6-27 (170)
307 3pqc_A Probable GTP-binding pr 97.3 0.00011 3.7E-09 52.0 2.8 23 18-40 25-47 (195)
308 2cdn_A Adenylate kinase; phosp 97.3 0.00016 5.6E-09 52.2 3.8 26 15-40 19-44 (201)
309 1g16_A RAS-related protein SEC 97.3 0.00011 3.7E-09 50.7 2.6 22 19-40 6-27 (170)
310 1zd8_A GTP:AMP phosphotransfer 97.3 0.00014 4.7E-09 53.7 3.3 26 14-39 5-30 (227)
311 2lkc_A Translation initiation 97.3 0.00018 6.1E-09 50.2 3.8 25 15-39 7-31 (178)
312 1ukz_A Uridylate kinase; trans 97.3 0.00015 5.1E-09 52.3 3.5 25 15-39 14-38 (203)
313 1uj2_A Uridine-cytidine kinase 97.3 0.00014 4.7E-09 54.7 3.4 24 16-39 22-45 (252)
314 3dl0_A Adenylate kinase; phosp 97.3 0.00014 5E-09 53.0 3.4 23 18-40 2-24 (216)
315 3t1o_A Gliding protein MGLA; G 97.3 0.00014 4.6E-09 51.5 3.2 24 18-41 16-39 (198)
316 1zuh_A Shikimate kinase; alpha 97.3 0.00016 5.5E-09 50.7 3.5 23 17-39 8-30 (168)
317 2fn4_A P23, RAS-related protei 97.3 0.00012 4E-09 51.1 2.7 22 18-39 11-32 (181)
318 2cxx_A Probable GTP-binding pr 97.3 0.00012 4.1E-09 51.6 2.8 22 19-40 4-25 (190)
319 3bos_A Putative DNA replicatio 97.3 0.00012 4.2E-09 53.4 2.9 27 15-41 51-77 (242)
320 1moz_A ARL1, ADP-ribosylation 97.3 8E-05 2.7E-09 52.3 1.7 23 16-38 18-40 (183)
321 3clv_A RAB5 protein, putative; 97.3 0.00014 4.8E-09 51.4 3.0 23 18-40 9-31 (208)
322 4dsu_A GTPase KRAS, isoform 2B 97.3 0.00014 4.9E-09 51.1 3.0 23 18-40 6-28 (189)
323 2hxs_A RAB-26, RAS-related pro 97.3 0.00016 5.6E-09 50.3 3.3 23 18-40 8-30 (178)
324 1r2q_A RAS-related protein RAB 97.3 0.00015 5E-09 50.0 2.9 22 18-39 8-29 (170)
325 2oil_A CATX-8, RAS-related pro 97.3 0.00014 4.9E-09 51.7 3.0 23 18-40 27-49 (193)
326 3bc1_A RAS-related protein RAB 97.3 0.00015 5E-09 51.1 2.9 22 18-39 13-34 (195)
327 2dby_A GTP-binding protein; GD 97.3 0.00013 4.5E-09 58.5 2.9 21 19-39 4-24 (368)
328 2grj_A Dephospho-COA kinase; T 97.3 0.00018 6.1E-09 52.5 3.4 23 17-39 13-35 (192)
329 2q6t_A DNAB replication FORK h 97.3 0.00042 1.4E-08 56.5 5.9 36 7-42 191-226 (444)
330 3iby_A Ferrous iron transport 97.3 0.00016 5.4E-09 54.9 3.2 23 18-40 3-25 (256)
331 1zak_A Adenylate kinase; ATP:A 97.2 0.00014 4.7E-09 53.5 2.8 26 15-40 4-29 (222)
332 1upt_A ARL1, ADP-ribosylation 97.2 0.00016 5.4E-09 50.0 2.9 22 18-39 9-30 (171)
333 1wf3_A GTP-binding protein; GT 97.2 0.00018 6.2E-09 55.9 3.5 23 18-40 9-31 (301)
334 2iyv_A Shikimate kinase, SK; t 97.2 0.00015 5.1E-09 51.6 2.8 22 18-39 4-25 (184)
335 3iev_A GTP-binding protein ERA 97.2 0.00019 6.4E-09 55.8 3.5 24 17-40 11-34 (308)
336 1r8s_A ADP-ribosylation factor 97.2 0.00017 5.9E-09 49.6 2.9 21 19-39 3-23 (164)
337 2a9k_A RAS-related protein RAL 97.2 0.00017 5.8E-09 50.5 2.9 23 18-40 20-42 (187)
338 2g6b_A RAS-related protein RAB 97.2 0.00018 6E-09 50.3 2.9 23 18-40 12-34 (180)
339 3con_A GTPase NRAS; structural 97.2 0.00017 6E-09 51.0 2.9 23 18-40 23-45 (190)
340 3a4m_A L-seryl-tRNA(SEC) kinas 97.2 0.00023 7.8E-09 53.9 3.7 25 15-39 3-27 (260)
341 1z0f_A RAB14, member RAS oncog 97.2 0.00018 6.2E-09 50.0 2.9 23 18-40 17-39 (179)
342 2f6r_A COA synthase, bifunctio 97.2 0.00018 6.2E-09 55.3 3.1 23 16-38 75-97 (281)
343 2y8e_A RAB-protein 6, GH09086P 97.2 0.00016 5.6E-09 50.2 2.6 22 18-39 16-37 (179)
344 3t5d_A Septin-7; GTP-binding p 97.2 0.00016 5.5E-09 55.1 2.8 22 19-40 11-32 (274)
345 1a7j_A Phosphoribulokinase; tr 97.2 9E-05 3.1E-09 57.4 1.3 26 15-40 4-29 (290)
346 1sky_E F1-ATPase, F1-ATP synth 97.2 9E-05 3.1E-09 61.3 1.3 39 11-49 146-184 (473)
347 3cbq_A GTP-binding protein REM 97.2 0.00016 5.4E-09 52.1 2.5 22 18-39 25-46 (195)
348 2xb4_A Adenylate kinase; ATP-b 97.2 0.00023 8E-09 52.6 3.4 23 18-40 2-24 (223)
349 2efe_B Small GTP-binding prote 97.2 0.0002 7E-09 50.0 3.0 23 18-40 14-36 (181)
350 3a1s_A Iron(II) transport prot 97.2 0.00022 7.5E-09 54.2 3.3 23 18-40 7-29 (258)
351 1ksh_A ARF-like protein 2; sma 97.2 0.00023 7.7E-09 50.2 3.1 26 15-40 17-42 (186)
352 3i8s_A Ferrous iron transport 97.2 0.0002 6.9E-09 54.7 3.0 23 18-40 5-27 (274)
353 1nrj_B SR-beta, signal recogni 97.2 0.0002 7E-09 51.9 2.9 23 18-40 14-36 (218)
354 2bov_A RAla, RAS-related prote 97.2 0.00021 7.3E-09 51.0 2.9 22 18-39 16-37 (206)
355 3tkl_A RAS-related protein RAB 97.2 0.00021 7.4E-09 50.6 2.9 23 18-40 18-40 (196)
356 3tlx_A Adenylate kinase 2; str 97.2 0.00028 9.5E-09 53.0 3.7 25 15-39 28-52 (243)
357 2gf9_A RAS-related protein RAB 97.2 0.00022 7.5E-09 50.6 2.9 23 18-40 24-46 (189)
358 2bme_A RAB4A, RAS-related prot 97.2 0.0002 6.8E-09 50.4 2.6 23 18-40 12-34 (186)
359 1vg8_A RAS-related protein RAB 97.2 0.00023 7.7E-09 51.0 3.0 23 18-40 10-32 (207)
360 2xtp_A GTPase IMAP family memb 97.1 0.00022 7.5E-09 53.6 3.0 23 18-40 24-46 (260)
361 2gf0_A GTP-binding protein DI- 97.1 0.00021 7.3E-09 50.7 2.7 22 18-39 10-31 (199)
362 1mh1_A RAC1; GTP-binding, GTPa 97.1 0.00024 8.3E-09 49.7 2.9 22 18-39 7-28 (186)
363 1m7b_A RND3/RHOE small GTP-bin 97.1 0.00022 7.4E-09 50.5 2.6 22 18-39 9-30 (184)
364 2wsm_A Hydrogenase expression/ 97.1 0.00024 8.1E-09 51.7 2.9 23 17-39 31-53 (221)
365 1zbd_A Rabphilin-3A; G protein 97.1 0.00028 9.6E-09 50.5 3.2 23 18-40 10-32 (203)
366 3kkq_A RAS-related protein M-R 97.1 0.00032 1.1E-08 49.2 3.5 22 18-39 20-41 (183)
367 2fg5_A RAB-22B, RAS-related pr 97.1 0.00022 7.6E-09 50.8 2.7 23 18-40 25-47 (192)
368 2il1_A RAB12; G-protein, GDP, 97.1 0.00026 8.8E-09 50.6 3.0 23 18-40 28-50 (192)
369 3cnl_A YLQF, putative uncharac 97.1 0.00027 9.4E-09 53.9 3.2 29 17-45 100-128 (262)
370 2cjw_A GTP-binding protein GEM 97.1 0.00026 8.8E-09 50.8 2.9 21 18-38 8-28 (192)
371 3oes_A GTPase rhebl1; small GT 97.1 0.00023 8E-09 51.1 2.6 23 18-40 26-48 (201)
372 1l8q_A Chromosomal replication 97.1 0.00017 5.8E-09 55.9 2.0 28 16-43 37-64 (324)
373 1z06_A RAS-related protein RAB 97.1 0.00028 9.5E-09 50.0 3.0 22 18-39 22-43 (189)
374 4bas_A ADP-ribosylation factor 97.1 0.00029 9.8E-09 50.0 3.1 23 18-40 19-41 (199)
375 2a5j_A RAS-related protein RAB 97.1 0.00028 9.4E-09 50.2 3.0 23 18-40 23-45 (191)
376 2h57_A ADP-ribosylation factor 97.1 0.00021 7.2E-09 50.7 2.3 23 18-40 23-45 (190)
377 4dhe_A Probable GTP-binding pr 97.1 0.00012 4.2E-09 53.2 1.1 23 18-40 31-53 (223)
378 2qu8_A Putative nucleolar GTP- 97.1 0.0003 1E-08 51.7 3.1 23 18-40 31-53 (228)
379 1ltq_A Polynucleotide kinase; 97.1 0.00033 1.1E-08 53.6 3.5 22 17-38 3-24 (301)
380 3bwd_D RAC-like GTP-binding pr 97.1 0.00029 9.9E-09 49.2 2.9 23 18-40 10-32 (182)
381 3t5g_A GTP-binding protein RHE 97.1 0.00026 8.8E-09 49.6 2.6 21 18-38 8-28 (181)
382 1zj6_A ADP-ribosylation factor 97.1 0.00029 1E-08 49.8 3.0 23 17-39 17-39 (187)
383 1e4v_A Adenylate kinase; trans 97.1 0.0003 1E-08 51.4 3.1 22 18-39 2-23 (214)
384 3dz8_A RAS-related protein RAB 97.1 0.00025 8.7E-09 50.4 2.6 23 18-40 25-47 (191)
385 3reg_A RHO-like small GTPase; 97.1 0.00029 9.9E-09 50.1 2.9 23 18-40 25-47 (194)
386 2o52_A RAS-related protein RAB 97.1 0.00029 1E-08 50.6 3.0 23 18-40 27-49 (200)
387 1jwy_B Dynamin A GTPase domain 97.1 0.00028 9.5E-09 54.3 3.0 24 18-41 26-49 (315)
388 1jbk_A CLPB protein; beta barr 97.1 0.00041 1.4E-08 48.4 3.6 27 15-41 42-68 (195)
389 2ew1_A RAS-related protein RAB 97.1 0.00026 8.9E-09 51.4 2.6 22 18-39 28-49 (201)
390 2f7s_A C25KG, RAS-related prot 97.1 0.00036 1.2E-08 50.5 3.3 23 18-40 27-49 (217)
391 1x3s_A RAS-related protein RAB 97.1 0.00031 1.1E-08 49.6 2.9 23 18-40 17-39 (195)
392 2atv_A RERG, RAS-like estrogen 97.1 0.00032 1.1E-08 50.1 3.0 22 18-39 30-51 (196)
393 3llu_A RAS-related GTP-binding 97.1 0.00035 1.2E-08 50.0 3.2 24 18-41 22-45 (196)
394 1zd9_A ADP-ribosylation factor 97.1 0.00032 1.1E-08 49.8 2.9 22 18-39 24-45 (188)
395 3cph_A RAS-related protein SEC 97.1 0.00031 1.1E-08 50.5 2.9 23 18-40 22-44 (213)
396 2p5s_A RAS and EF-hand domain 97.0 0.00033 1.1E-08 50.2 3.0 23 18-40 30-52 (199)
397 2h17_A ADP-ribosylation factor 97.0 0.00027 9.4E-09 49.8 2.5 22 18-39 23-44 (181)
398 2qmh_A HPR kinase/phosphorylas 97.0 0.00074 2.5E-08 50.0 4.8 30 10-39 28-57 (205)
399 2q3h_A RAS homolog gene family 97.0 0.00039 1.3E-08 49.6 3.3 23 18-40 22-44 (201)
400 2bcg_Y Protein YP2, GTP-bindin 97.0 0.0003 1E-08 50.5 2.6 23 18-40 10-32 (206)
401 3d3q_A TRNA delta(2)-isopenten 97.0 0.00039 1.3E-08 55.3 3.4 25 17-41 8-32 (340)
402 2iwr_A Centaurin gamma 1; ANK 97.0 0.00026 8.9E-09 49.5 2.1 22 18-39 9-30 (178)
403 2j1l_A RHO-related GTP-binding 97.0 0.00038 1.3E-08 50.6 3.0 22 18-39 36-57 (214)
404 3be4_A Adenylate kinase; malar 97.0 0.00042 1.4E-08 50.9 3.2 25 16-40 5-29 (217)
405 2fv8_A H6, RHO-related GTP-bin 97.0 0.00034 1.1E-08 50.5 2.7 23 18-40 27-49 (207)
406 3zvl_A Bifunctional polynucleo 97.0 0.00045 1.5E-08 56.0 3.6 27 14-40 256-282 (416)
407 3c5c_A RAS-like protein 12; GD 97.0 0.00041 1.4E-08 49.4 3.0 22 18-39 23-44 (187)
408 1gwn_A RHO-related GTP-binding 97.0 0.00035 1.2E-08 50.8 2.6 23 18-40 30-52 (205)
409 4edh_A DTMP kinase, thymidylat 97.0 0.00054 1.8E-08 50.7 3.7 28 14-41 4-31 (213)
410 1njg_A DNA polymerase III subu 97.0 0.00049 1.7E-08 49.7 3.4 24 18-41 47-70 (250)
411 2aka_B Dynamin-1; fusion prote 97.0 0.00035 1.2E-08 53.2 2.7 24 18-41 28-51 (299)
412 2h92_A Cytidylate kinase; ross 97.0 0.00042 1.4E-08 50.5 3.0 24 16-39 3-26 (219)
413 3h4m_A Proteasome-activating n 97.0 0.00046 1.6E-08 52.2 3.3 27 14-40 49-75 (285)
414 2fh5_B SR-beta, signal recogni 97.0 0.00043 1.5E-08 50.0 2.9 23 18-40 9-31 (214)
415 3def_A T7I23.11 protein; chlor 97.0 0.00043 1.5E-08 52.3 3.0 23 18-40 38-60 (262)
416 2b6h_A ADP-ribosylation factor 96.9 0.0004 1.4E-08 49.6 2.7 23 17-39 30-52 (192)
417 4dcu_A GTP-binding protein ENG 96.9 0.0004 1.4E-08 56.7 2.9 23 18-40 25-47 (456)
418 3v9p_A DTMP kinase, thymidylat 96.9 0.00042 1.5E-08 51.9 2.8 28 14-41 23-50 (227)
419 2gco_A H9, RHO-related GTP-bin 96.9 0.0004 1.4E-08 49.9 2.6 23 18-40 27-49 (201)
420 2fu5_C RAS-related protein RAB 96.9 0.00027 9.1E-09 49.6 1.6 23 18-40 10-32 (183)
421 2i1q_A DNA repair and recombin 96.9 0.00058 2E-08 53.1 3.7 27 12-38 94-120 (322)
422 1ak2_A Adenylate kinase isoenz 96.9 0.00064 2.2E-08 50.4 3.7 26 15-40 15-40 (233)
423 1h65_A Chloroplast outer envel 96.9 0.00046 1.6E-08 52.3 3.0 23 18-40 41-63 (270)
424 2atx_A Small GTP binding prote 96.9 0.00045 1.5E-08 49.1 2.7 22 18-39 20-41 (194)
425 1u94_A RECA protein, recombina 96.9 0.00051 1.8E-08 54.8 3.2 29 13-41 60-88 (356)
426 2z4s_A Chromosomal replication 96.9 0.00045 1.5E-08 56.4 2.9 24 17-40 131-154 (440)
427 3lv8_A DTMP kinase, thymidylat 96.9 0.0006 2.1E-08 51.4 3.4 27 15-41 26-52 (236)
428 2g3y_A GTP-binding protein GEM 96.9 0.0006 2.1E-08 50.2 3.3 22 18-39 39-60 (211)
429 2hf9_A Probable hydrogenase ni 96.9 0.00051 1.8E-08 50.1 2.9 24 17-40 39-62 (226)
430 3crm_A TRNA delta(2)-isopenten 96.9 0.00061 2.1E-08 53.8 3.4 24 17-40 6-29 (323)
431 1ypw_A Transitional endoplasmi 96.9 0.00016 5.6E-09 63.2 0.2 40 10-51 505-544 (806)
432 2ocp_A DGK, deoxyguanosine kin 96.9 0.00065 2.2E-08 50.5 3.4 25 16-40 2-26 (241)
433 2p65_A Hypothetical protein PF 96.9 0.00055 1.9E-08 47.8 2.8 27 16-42 43-69 (187)
434 3exa_A TRNA delta(2)-isopenten 96.9 0.00072 2.5E-08 53.3 3.7 25 16-40 3-27 (322)
435 4djt_A GTP-binding nuclear pro 96.9 0.00023 7.9E-09 51.6 0.8 23 18-40 13-35 (218)
436 4tmk_A Protein (thymidylate ki 96.8 0.00074 2.5E-08 50.0 3.4 27 15-41 2-28 (213)
437 2hup_A RAS-related protein RAB 96.8 0.00058 2E-08 49.2 2.7 23 18-40 31-53 (201)
438 2zts_A Putative uncharacterize 96.8 0.001 3.5E-08 48.9 4.1 25 13-37 27-51 (251)
439 2x77_A ADP-ribosylation factor 96.8 0.00039 1.3E-08 49.1 1.7 24 16-39 22-45 (189)
440 3cpj_B GTP-binding protein YPT 96.8 0.00067 2.3E-08 49.6 3.0 23 18-40 15-37 (223)
441 1sxj_D Activator 1 41 kDa subu 96.8 0.00062 2.1E-08 52.8 2.9 24 18-41 60-83 (353)
442 3a8t_A Adenylate isopentenyltr 96.8 0.00096 3.3E-08 53.0 4.0 26 15-40 39-64 (339)
443 3dm5_A SRP54, signal recogniti 96.8 0.00075 2.6E-08 55.4 3.4 34 15-48 99-132 (443)
444 2qz4_A Paraplegin; AAA+, SPG7, 96.8 0.00082 2.8E-08 50.0 3.4 26 15-40 38-63 (262)
445 2v3c_C SRP54, signal recogniti 96.8 0.00019 6.5E-09 58.7 -0.1 33 17-49 100-132 (432)
446 3q3j_B RHO-related GTP-binding 96.8 0.0007 2.4E-08 49.3 2.9 22 18-39 29-50 (214)
447 4gzl_A RAS-related C3 botulinu 96.8 0.00063 2.1E-08 49.1 2.6 22 18-39 32-53 (204)
448 3ld9_A DTMP kinase, thymidylat 96.8 0.00098 3.4E-08 49.8 3.7 28 14-41 19-46 (223)
449 2yc2_C IFT27, small RAB-relate 96.8 0.00025 8.6E-09 50.6 0.4 22 18-39 22-43 (208)
450 3tmk_A Thymidylate kinase; pho 96.8 0.00093 3.2E-08 49.7 3.4 29 14-42 3-31 (216)
451 2r62_A Cell division protease 96.7 0.0002 6.7E-09 53.9 -0.3 26 12-39 42-67 (268)
452 3umf_A Adenylate kinase; rossm 96.7 0.001 3.4E-08 49.5 3.5 29 12-40 25-53 (217)
453 3tqf_A HPR(Ser) kinase; transf 96.7 0.0016 5.6E-08 47.1 4.4 33 5-38 6-38 (181)
454 1p5z_B DCK, deoxycytidine kina 96.7 0.0006 2E-08 51.5 2.1 27 14-40 22-48 (263)
455 2j0v_A RAC-like GTP-binding pr 96.7 0.00079 2.7E-08 48.5 2.6 22 18-39 11-32 (212)
456 3p32_A Probable GTPase RV1496/ 96.7 0.00097 3.3E-08 52.8 3.2 27 15-41 78-104 (355)
457 3foz_A TRNA delta(2)-isopenten 96.7 0.0012 4E-08 52.0 3.4 25 16-40 10-34 (316)
458 1wxq_A GTP-binding protein; st 96.6 0.00096 3.3E-08 53.9 3.0 22 19-40 3-24 (397)
459 2chg_A Replication factor C sm 96.6 0.0012 4E-08 47.2 3.2 23 18-40 40-62 (226)
460 1puj_A YLQF, conserved hypothe 96.6 0.0016 5.4E-08 50.2 3.8 25 18-42 122-146 (282)
461 2hjg_A GTP-binding protein ENG 96.6 0.0011 3.8E-08 53.8 3.0 23 18-40 5-27 (436)
462 2orw_A Thymidine kinase; TMTK, 96.6 0.0012 4.2E-08 47.5 2.9 24 15-38 2-26 (184)
463 3sr0_A Adenylate kinase; phosp 96.6 0.0015 5.2E-08 48.1 3.4 23 18-40 2-24 (206)
464 3n70_A Transport activator; si 96.6 0.0015 5.3E-08 44.8 3.2 28 15-42 23-50 (145)
465 4hlc_A DTMP kinase, thymidylat 96.5 0.0018 6E-08 47.6 3.6 26 16-41 2-27 (205)
466 2v1u_A Cell division control p 96.5 0.0011 3.6E-08 51.8 2.5 28 14-41 42-69 (387)
467 4a9a_A Ribosome-interacting GT 96.5 0.0015 5E-08 52.6 3.2 44 10-53 64-120 (376)
468 3gj0_A GTP-binding nuclear pro 96.5 0.00091 3.1E-08 48.6 1.7 22 18-39 17-39 (221)
469 3th5_A RAS-related C3 botulinu 95.5 0.00046 1.6E-08 49.5 0.0 22 18-39 32-53 (204)
470 3r7w_A Gtpase1, GTP-binding pr 96.4 0.0021 7.3E-08 49.7 3.7 22 18-39 5-26 (307)
471 3syl_A Protein CBBX; photosynt 96.4 0.002 6.9E-08 49.2 3.5 26 15-40 66-91 (309)
472 3eph_A TRNA isopentenyltransfe 96.4 0.0019 6.4E-08 52.5 3.4 24 17-40 3-26 (409)
473 3l0i_B RAS-related protein RAB 96.4 0.00027 9.3E-09 50.6 -1.5 23 18-40 35-57 (199)
474 2x2e_A Dynamin-1; nitration, h 96.4 0.0011 3.8E-08 52.3 1.9 23 18-40 33-55 (353)
475 1d2n_A N-ethylmaleimide-sensit 96.4 0.002 6.7E-08 48.6 3.2 23 17-39 65-87 (272)
476 3geh_A MNME, tRNA modification 96.4 0.0016 5.6E-08 53.6 2.7 24 16-39 224-247 (462)
477 1g41_A Heat shock protein HSLU 96.3 0.0023 7.9E-08 52.5 3.5 42 19-62 53-94 (444)
478 1xp8_A RECA protein, recombina 96.3 0.0019 6.5E-08 51.6 2.9 28 13-40 71-98 (366)
479 3gmt_A Adenylate kinase; ssgci 96.3 0.0023 7.9E-08 48.1 3.2 23 18-40 10-32 (230)
480 2qpt_A EH domain-containing pr 96.3 0.0019 6.4E-08 54.3 3.0 24 17-40 66-89 (550)
481 1ofh_A ATP-dependent HSL prote 96.3 0.0023 7.9E-08 48.5 3.2 25 16-40 50-74 (310)
482 2vhj_A Ntpase P4, P4; non- hyd 96.3 0.0029 9.8E-08 50.1 3.7 28 12-39 119-146 (331)
483 3pvs_A Replication-associated 96.3 0.002 6.8E-08 52.8 2.9 25 18-42 52-76 (447)
484 1lnz_A SPO0B-associated GTP-bi 96.3 0.0024 8.2E-08 50.6 3.2 31 9-39 151-181 (342)
485 2qgz_A Helicase loader, putati 96.3 0.003 1E-07 49.1 3.7 26 16-41 152-177 (308)
486 1xwi_A SKD1 protein; VPS4B, AA 96.3 0.0026 9E-08 49.6 3.4 26 15-40 44-69 (322)
487 3sjy_A Translation initiation 96.3 0.0027 9.1E-08 51.0 3.5 23 18-40 10-32 (403)
488 3t15_A Ribulose bisphosphate c 96.3 0.0026 8.9E-08 48.9 3.3 24 17-40 37-60 (293)
489 3ec1_A YQEH GTPase; atnos1, at 96.3 0.0022 7.6E-08 51.1 3.0 24 16-39 162-185 (369)
490 3hws_A ATP-dependent CLP prote 96.3 0.0024 8.4E-08 50.3 3.2 25 16-40 51-75 (363)
491 3uk6_A RUVB-like 2; hexameric 96.3 0.0024 8.2E-08 49.9 3.1 27 16-42 70-96 (368)
492 2qby_B CDC6 homolog 3, cell di 96.3 0.0028 9.5E-08 49.6 3.5 25 16-40 45-69 (384)
493 1f5n_A Interferon-induced guan 96.2 0.0021 7.3E-08 54.5 2.9 24 17-40 39-62 (592)
494 2bjv_A PSP operon transcriptio 96.2 0.0043 1.5E-07 46.5 4.2 26 16-41 29-54 (265)
495 2qen_A Walker-type ATPase; unk 96.2 0.0033 1.1E-07 48.3 3.6 25 16-40 31-55 (350)
496 3pfi_A Holliday junction ATP-d 96.2 0.0028 9.6E-08 49.1 3.2 23 18-40 57-79 (338)
497 3d8b_A Fidgetin-like protein 1 96.2 0.0034 1.2E-07 49.5 3.6 26 15-40 116-141 (357)
498 2hjg_A GTP-binding protein ENG 96.2 0.0029 9.9E-08 51.3 3.2 23 18-40 177-199 (436)
499 2j69_A Bacterial dynamin-like 96.2 0.0028 9.7E-08 54.6 3.3 26 15-40 68-93 (695)
500 3eie_A Vacuolar protein sortin 96.1 0.0038 1.3E-07 48.5 3.6 25 16-40 51-75 (322)
No 1
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=1.3e-42 Score=265.28 Aligned_cols=139 Identities=24% Similarity=0.263 Sum_probs=106.4
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeecc-------------eeeeeecCcccccCc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVR-------------DIGYMPQVGLMRSGA 70 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~~-------------~i~~~~q~~~~~~~~ 70 (149)
++++|+||++++||++||+||||||||||+|+|+|+++|++|+|+++|.++. .++|+||++ .
T Consensus 19 ~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~-----~ 93 (235)
T 3tif_A 19 YALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQF-----N 93 (235)
T ss_dssp EEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTC-----C
T ss_pred eeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHhhccEEEEecCC-----c
Confidence 4799999999999999999999999999999999999999999999998751 499999984 3
Q ss_pred ccccCChhHHHhhc---c---cCch---HHHHHHHhhhhHHHHh--hcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCC
Q psy10767 71 LLAEDSPSYLLEYY---N---CSTL---EDVFLYLCEQDQILFS--LVGSESAFGGQQRRVSFAVSLIHDPKILILDEPT 139 (149)
Q Consensus 71 ~~~~~~~~~~~~~~---~---~~~~---~~~~~~~~~~~~~~~~--~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt 139 (149)
+++..++.++..+. . .... .+.+.++++..++... ......|||||||||+|||||+.+|++|||||||
T Consensus 94 l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPt 173 (235)
T 3tif_A 94 LIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPT 173 (235)
T ss_dssp CCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTT
T ss_pred cCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 44455666665431 1 1111 2223334444333211 1223346999999999999999999999999999
Q ss_pred CCCCcCCC
Q psy10767 140 VGLDPVLS 147 (149)
Q Consensus 140 ~gLD~~~~ 147 (149)
++||+..+
T Consensus 174 s~LD~~~~ 181 (235)
T 3tif_A 174 WALDSKTG 181 (235)
T ss_dssp TTSCHHHH
T ss_pred ccCCHHHH
Confidence 99998754
No 2
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=3.2e-42 Score=277.30 Aligned_cols=137 Identities=32% Similarity=0.434 Sum_probs=110.6
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec-----------ceeeeeecCcccccCccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV-----------RDIGYMPQVGLMRSGALL 72 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~-----------~~i~~~~q~~~~~~~~~~ 72 (149)
.+|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|+++|+++ +.|+|+||+ ..++
T Consensus 18 ~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~-----~~l~ 92 (359)
T 3fvq_A 18 PVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQE-----GVLF 92 (359)
T ss_dssp EEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCEEECTT-----CCCC
T ss_pred EEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCEEEEeCC-----CcCC
Confidence 479999999999999999999999999999999999999999999999876 359999998 4456
Q ss_pred ccCChhHHHhhcc----cCc--hHHHHHHHhhhhHH---HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCC
Q psy10767 73 AEDSPSYLLEYYN----CST--LEDVFLYLCEQDQI---LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLD 143 (149)
Q Consensus 73 ~~~~~~~~~~~~~----~~~--~~~~~~~~~~~~~~---~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD 143 (149)
+..++.++..+.. ... ..+.+.++++.+++ ..+... .|||||||||+|||||+.+|++|||||||++||
T Consensus 93 p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~--~LSGGq~QRValArAL~~~P~lLLLDEPts~LD 170 (359)
T 3fvq_A 93 PHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPH--ELSGGQQQRAALARALAPDPELILLDEPFSALD 170 (359)
T ss_dssp TTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGG--GSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSC
T ss_pred CCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChh--hCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCC
Confidence 6677888776531 111 13344455555444 233333 459999999999999999999999999999999
Q ss_pred cCCC
Q psy10767 144 PVLS 147 (149)
Q Consensus 144 ~~~~ 147 (149)
+..+
T Consensus 171 ~~~r 174 (359)
T 3fvq_A 171 EQLR 174 (359)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9765
No 3
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=6.5e-42 Score=275.89 Aligned_cols=139 Identities=26% Similarity=0.341 Sum_probs=109.3
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec------------ceeeeeecCcccccCcc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV------------RDIGYMPQVGLMRSGAL 71 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~------------~~i~~~~q~~~~~~~~~ 71 (149)
.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++ +.|+|+||++ .+
T Consensus 42 ~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~-----~l 116 (366)
T 3tui_C 42 QALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHF-----NL 116 (366)
T ss_dssp EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHHHHTTEEEECSSC-----CC
T ss_pred EEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhCcEEEEeCCC-----cc
Confidence 479999999999999999999999999999999999999999999999875 3599999984 44
Q ss_pred cccCChhHHHhhc----ccCc--hHHHHHHHhhhhHHHH-hhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCc
Q psy10767 72 LAEDSPSYLLEYY----NCST--LEDVFLYLCEQDQILF-SLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDP 144 (149)
Q Consensus 72 ~~~~~~~~~~~~~----~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~ 144 (149)
++..++.++..+. .... ..+.+.++++.+++.. .......|||||||||+|||||+.+|++|||||||++||+
T Consensus 117 ~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~ 196 (366)
T 3tui_C 117 LSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDP 196 (366)
T ss_dssp CTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCH
T ss_pred CCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCH
Confidence 5556676666542 2111 1233445555554421 1222345699999999999999999999999999999999
Q ss_pred CCC
Q psy10767 145 VLS 147 (149)
Q Consensus 145 ~~~ 147 (149)
..+
T Consensus 197 ~~~ 199 (366)
T 3tui_C 197 ATT 199 (366)
T ss_dssp HHH
T ss_pred HHH
Confidence 754
No 4
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=3.7e-42 Score=261.05 Aligned_cols=137 Identities=25% Similarity=0.273 Sum_probs=105.6
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec-------------ceeeeeecCcccccCc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV-------------RDIGYMPQVGLMRSGA 70 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~-------------~~i~~~~q~~~~~~~~ 70 (149)
.+++|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|.++ +.++|+||++ .
T Consensus 18 ~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~-----~ 92 (224)
T 2pcj_A 18 EILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFH-----Y 92 (224)
T ss_dssp EEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHHHEEEECSSC-----C
T ss_pred eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhCcEEEEecCc-----c
Confidence 479999999999999999999999999999999999999999999999765 2499999984 3
Q ss_pred ccccCChhHHHhhc----ccC--chHHHHHHHhhhhHH---HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCC
Q psy10767 71 LLAEDSPSYLLEYY----NCS--TLEDVFLYLCEQDQI---LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVG 141 (149)
Q Consensus 71 ~~~~~~~~~~~~~~----~~~--~~~~~~~~~~~~~~~---~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~g 141 (149)
+++..++.++..+. ... ...+.+.++++.+++ ..+.. ..||||||||++|||||+.+|++|||||||++
T Consensus 93 l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~LSgGq~qrv~laral~~~p~lllLDEPt~~ 170 (224)
T 2pcj_A 93 LIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKP--YELSGGEQQRVAIARALANEPILLFADEPTGN 170 (224)
T ss_dssp CCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCG--GGSCHHHHHHHHHHHHTTTCCSEEEEESTTTT
T ss_pred cCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCCh--hhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCC
Confidence 34445666665432 111 112233344444433 12222 34699999999999999999999999999999
Q ss_pred CCcCCC
Q psy10767 142 LDPVLS 147 (149)
Q Consensus 142 LD~~~~ 147 (149)
||+..+
T Consensus 171 LD~~~~ 176 (224)
T 2pcj_A 171 LDSANT 176 (224)
T ss_dssp CCHHHH
T ss_pred CCHHHH
Confidence 999754
No 5
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=5.3e-42 Score=267.56 Aligned_cols=138 Identities=27% Similarity=0.301 Sum_probs=105.9
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec-----------ceeeeeecCcccccCccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV-----------RDIGYMPQVGLMRSGALL 72 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~-----------~~i~~~~q~~~~~~~~~~ 72 (149)
.+|+|+||++++||++||+||||||||||+|+|+|+++|++|+|+++|+++ +.|+|+||++.. . +
T Consensus 22 ~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~---~-~ 97 (275)
T 3gfo_A 22 HALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDN---Q-L 97 (275)
T ss_dssp EEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHSEEEECSSGGG---T-C
T ss_pred eEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCcEEEEEcCccc---c-c
Confidence 489999999999999999999999999999999999999999999999876 259999998521 1 1
Q ss_pred ccCChhHHHhhc----ccCc--hHHHHHHHhhhhHH---HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCC
Q psy10767 73 AEDSPSYLLEYY----NCST--LEDVFLYLCEQDQI---LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLD 143 (149)
Q Consensus 73 ~~~~~~~~~~~~----~~~~--~~~~~~~~~~~~~~---~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD 143 (149)
...++.++..+. .... ..+.+.++++.+++ ..+... .|||||||||+|||||+.+|++|||||||+|||
T Consensus 98 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~--~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD 175 (275)
T 3gfo_A 98 FSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTH--CLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLD 175 (275)
T ss_dssp CSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGG--GSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCC
T ss_pred ccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcc--cCCHHHHHHHHHHHHHHcCCCEEEEECccccCC
Confidence 234555555432 1111 12334444444443 222333 459999999999999999999999999999999
Q ss_pred cCCC
Q psy10767 144 PVLS 147 (149)
Q Consensus 144 ~~~~ 147 (149)
+..+
T Consensus 176 ~~~~ 179 (275)
T 3gfo_A 176 PMGV 179 (275)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9754
No 6
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=1.4e-41 Score=256.68 Aligned_cols=139 Identities=23% Similarity=0.267 Sum_probs=107.1
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec----ceeeeeecCcccccCcccccCChhH
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV----RDIGYMPQVGLMRSGALLAEDSPSY 79 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~----~~i~~~~q~~~~~~~~~~~~~~~~~ 79 (149)
.+++++||++++||+++|+||||||||||+|+|+|+++|++|+|.++|.++ +.++|+||++. ++...++.+
T Consensus 23 ~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q~~~-----~~~~~tv~e 97 (214)
T 1sgw_A 23 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEII-----VPRKISVED 97 (214)
T ss_dssp EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSCC-----CCTTSBHHH
T ss_pred eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEeCCCc-----CCCCCCHHH
Confidence 479999999999999999999999999999999999999999999999875 46999999843 334445655
Q ss_pred HHhhc----ccCchHHHHHHHhhhhHHHHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCCC
Q psy10767 80 LLEYY----NCSTLEDVFLYLCEQDQILFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 80 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~~ 147 (149)
+..+. ......+.+.++++.+++.........+|||||||++|||||+.+|+++||||||++||+..+
T Consensus 98 nl~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~ 169 (214)
T 1sgw_A 98 YLKAVASLYGVKVNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSK 169 (214)
T ss_dssp HHHHHHHHTTCCCCHHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTH
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHcCCCcCCCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHH
Confidence 55432 111113334444444433111112234699999999999999999999999999999999875
No 7
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=2.9e-41 Score=258.54 Aligned_cols=139 Identities=22% Similarity=0.330 Sum_probs=107.0
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec----------ceeeeeecCcccccCcccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV----------RDIGYMPQVGLMRSGALLA 73 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~----------~~i~~~~q~~~~~~~~~~~ 73 (149)
++++++||++++||+++|+||||||||||+|+|+|+++|++|+|.++|.++ +.++|+||++ .++.
T Consensus 20 ~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~-----~l~~ 94 (240)
T 1ji0_A 20 HAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGR-----RIFP 94 (240)
T ss_dssp EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSC-----CCCT
T ss_pred eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEEEEecCC-----ccCC
Confidence 479999999999999999999999999999999999999999999999875 1399999984 3344
Q ss_pred cCChhHHHhhcc---c-C-chHHHHHHHhhhhH-HHH-hhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCC
Q psy10767 74 EDSPSYLLEYYN---C-S-TLEDVFLYLCEQDQ-ILF-SLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVL 146 (149)
Q Consensus 74 ~~~~~~~~~~~~---~-~-~~~~~~~~~~~~~~-~~~-~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~ 146 (149)
..++.++..+.. . . ...+....+++.++ +.. .......+|||||||++|||||+.+|++|||||||+|||+..
T Consensus 95 ~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~ 174 (240)
T 1ji0_A 95 ELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPIL 174 (240)
T ss_dssp TSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHH
T ss_pred CCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHH
Confidence 556666665432 1 1 11233344444442 311 111233569999999999999999999999999999999975
Q ss_pred C
Q psy10767 147 S 147 (149)
Q Consensus 147 ~ 147 (149)
+
T Consensus 175 ~ 175 (240)
T 1ji0_A 175 V 175 (240)
T ss_dssp H
T ss_pred H
Confidence 4
No 8
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=1.5e-41 Score=263.27 Aligned_cols=139 Identities=25% Similarity=0.261 Sum_probs=106.6
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeecc----------------------eeeeee
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVR----------------------DIGYMP 61 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~~----------------------~i~~~~ 61 (149)
.+++|+||++++||++||+||||||||||+|+|+|+++|++|+|.++|.++. .++|+|
T Consensus 20 ~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~ 99 (262)
T 1b0u_A 20 EVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVF 99 (262)
T ss_dssp EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEEC
T ss_pred EEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccChhhHHHHhcceEEEe
Confidence 4799999999999999999999999999999999999999999999997653 389999
Q ss_pred cCcccccCcccccCChhHHHhhc-----ccCc--hHHHHHHHhhhhHHHH--hhcCCCCCChhHHHHHHHHHHHhcCCCE
Q psy10767 62 QVGLMRSGALLAEDSPSYLLEYY-----NCST--LEDVFLYLCEQDQILF--SLVGSESAFGGQQRRVSFAVSLIHDPKI 132 (149)
Q Consensus 62 q~~~~~~~~~~~~~~~~~~~~~~-----~~~~--~~~~~~~~~~~~~~~~--~~~~~~~~sgGqkqrv~iaral~~~p~i 132 (149)
|++ .+++..++.++..+. .... ..+.+..+++.+++.. .......|||||||||+|||||+.+|++
T Consensus 100 Q~~-----~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~l 174 (262)
T 1b0u_A 100 QHF-----NLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDV 174 (262)
T ss_dssp SSC-----CCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHHHHHTCCSE
T ss_pred cCc-----ccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 984 334455666665441 1111 1223344444444311 1222334599999999999999999999
Q ss_pred EEEcCCCCCCCcCCC
Q psy10767 133 LILDEPTVGLDPVLS 147 (149)
Q Consensus 133 lllDEPt~gLD~~~~ 147 (149)
|||||||+|||+..+
T Consensus 175 llLDEPts~LD~~~~ 189 (262)
T 1b0u_A 175 LLFDEPTSALDPELV 189 (262)
T ss_dssp EEEESTTTTSCHHHH
T ss_pred EEEeCCCccCCHHHH
Confidence 999999999999754
No 9
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=1.1e-41 Score=275.95 Aligned_cols=137 Identities=28% Similarity=0.411 Sum_probs=109.3
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec-------ceeeeeecCcccccCcccccCC
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV-------RDIGYMPQVGLMRSGALLAEDS 76 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~-------~~i~~~~q~~~~~~~~~~~~~~ 76 (149)
.+|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|+++|+++ +.|+|+||+. .+++..+
T Consensus 17 ~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~VfQ~~-----~l~p~lt 91 (381)
T 3rlf_A 17 VVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSY-----ALYPHLS 91 (381)
T ss_dssp EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEECTTC-----CCCTTSC
T ss_pred EEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEEecCC-----cCCCCCC
Confidence 479999999999999999999999999999999999999999999999876 4599999984 4556667
Q ss_pred hhHHHhhc----ccCc--hHHHHHHHhhhhHH---HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCCC
Q psy10767 77 PSYLLEYY----NCST--LEDVFLYLCEQDQI---LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 77 ~~~~~~~~----~~~~--~~~~~~~~~~~~~~---~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~~ 147 (149)
+.++..+. .... ..+.+.++++.+++ ..++.. .|||||||||+|||||+.+|++|||||||++||+..+
T Consensus 92 V~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~--~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~ 169 (381)
T 3rlf_A 92 VAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPK--ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALR 169 (381)
T ss_dssp HHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGG--GSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChh--HCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHH
Confidence 77766542 1111 12334444444443 233333 4599999999999999999999999999999998754
No 10
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=4.3e-41 Score=258.67 Aligned_cols=138 Identities=28% Similarity=0.369 Sum_probs=105.1
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec---------ceeeeeecCcccccCccccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV---------RDIGYMPQVGLMRSGALLAE 74 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~---------~~i~~~~q~~~~~~~~~~~~ 74 (149)
.+++++||++++||+++|+||||||||||+|+|+|+++|++|+|.++|.++ +.|+|+||++. ++.
T Consensus 23 ~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~-----l~~- 96 (247)
T 2ff7_A 23 VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNV-----LLN- 96 (247)
T ss_dssp EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCC-----CTT-
T ss_pred ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcEEEEeCCCc-----ccc-
Confidence 579999999999999999999999999999999999999999999999875 24999999843 232
Q ss_pred CChhHHHhhcccCchHHHHHHHhhhhHH---HHhhc---------CCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCC
Q psy10767 75 DSPSYLLEYYNCSTLEDVFLYLCEQDQI---LFSLV---------GSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGL 142 (149)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~---------~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gL 142 (149)
.++.++..+.......+.+..+++..++ ..+.. ....||||||||++|||||+.+|++|||||||++|
T Consensus 97 ~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~L 176 (247)
T 2ff7_A 97 RSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSAL 176 (247)
T ss_dssp SBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCC
T ss_pred ccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 3666666553211112223233333222 11111 12356999999999999999999999999999999
Q ss_pred CcCCC
Q psy10767 143 DPVLS 147 (149)
Q Consensus 143 D~~~~ 147 (149)
|+..+
T Consensus 177 D~~~~ 181 (247)
T 2ff7_A 177 DYESE 181 (247)
T ss_dssp CHHHH
T ss_pred CHHHH
Confidence 98754
No 11
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=1.4e-41 Score=263.71 Aligned_cols=139 Identities=27% Similarity=0.363 Sum_probs=106.3
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec-----------ceeeeeecCcccccCccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV-----------RDIGYMPQVGLMRSGALL 72 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~-----------~~i~~~~q~~~~~~~~~~ 72 (149)
.+++|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++ +.++|+||++ .++
T Consensus 38 ~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~-----~l~ 112 (263)
T 2olj_A 38 EVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRF-----NLF 112 (263)
T ss_dssp EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHHEEEECSSC-----CCC
T ss_pred EEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCcEEEEeCCC-----cCC
Confidence 479999999999999999999999999999999999999999999999765 2499999984 334
Q ss_pred ccCChhHHHhhc-----ccCc--hHHHHHHHhhhhHHHH-hhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCc
Q psy10767 73 AEDSPSYLLEYY-----NCST--LEDVFLYLCEQDQILF-SLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDP 144 (149)
Q Consensus 73 ~~~~~~~~~~~~-----~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~ 144 (149)
+..++.++..+. .... ..+.+..+++.+++.. .......|||||||||+|||||+.+|++|||||||++||+
T Consensus 113 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~ 192 (263)
T 2olj_A 113 PHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDP 192 (263)
T ss_dssp TTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCH
T ss_pred CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCH
Confidence 455666665442 1111 1223344444444311 1112234699999999999999999999999999999999
Q ss_pred CCC
Q psy10767 145 VLS 147 (149)
Q Consensus 145 ~~~ 147 (149)
..+
T Consensus 193 ~~~ 195 (263)
T 2olj_A 193 EMV 195 (263)
T ss_dssp HHH
T ss_pred HHH
Confidence 754
No 12
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=3.2e-41 Score=261.97 Aligned_cols=137 Identities=26% Similarity=0.297 Sum_probs=107.5
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeecc---------eeeeeecCcccccCccccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVR---------DIGYMPQVGLMRSGALLAE 74 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~~---------~i~~~~q~~~~~~~~~~~~ 74 (149)
.+|+++||++++||++||+||||||||||+|+|+|+++|++|+|.++|+++. .++|++|++. +...
T Consensus 25 ~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~-----~~~~ 99 (266)
T 4g1u_C 25 ALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAVMRQYSE-----LAFP 99 (266)
T ss_dssp EEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEEECSCCC-----CCSC
T ss_pred eEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEEEEecCCc-----cCCC
Confidence 4799999999999999999999999999999999999999999999998762 4899999843 2334
Q ss_pred CChhHHHhhccc----CchHHHHHHHhhhhHH---HHhhcCCCCCChhHHHHHHHHHHHhc------CCCEEEEcCCCCC
Q psy10767 75 DSPSYLLEYYNC----STLEDVFLYLCEQDQI---LFSLVGSESAFGGQQRRVSFAVSLIH------DPKILILDEPTVG 141 (149)
Q Consensus 75 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~---~~~~~~~~~~sgGqkqrv~iaral~~------~p~illlDEPt~g 141 (149)
.++.++..+... ....+.+..+++.+++ .++... .|||||||||+|||||++ +|++|||||||+|
T Consensus 100 ~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~ 177 (266)
T 4g1u_C 100 FSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYR--VLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSA 177 (266)
T ss_dssp CBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGG--GCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSS
T ss_pred CCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCcc--cCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCcccc
Confidence 566666654311 1223344444444443 223333 459999999999999999 9999999999999
Q ss_pred CCcCCC
Q psy10767 142 LDPVLS 147 (149)
Q Consensus 142 LD~~~~ 147 (149)
||+..+
T Consensus 178 LD~~~~ 183 (266)
T 4g1u_C 178 LDLYHQ 183 (266)
T ss_dssp CCHHHH
T ss_pred CCHHHH
Confidence 998754
No 13
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=3.4e-41 Score=260.44 Aligned_cols=137 Identities=23% Similarity=0.336 Sum_probs=105.9
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec----------ceeeeeecCcccccCcccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV----------RDIGYMPQVGLMRSGALLA 73 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~----------~~i~~~~q~~~~~~~~~~~ 73 (149)
.+++|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++ +.++|+||++ .++.
T Consensus 21 ~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~-----~l~~ 95 (257)
T 1g6h_A 21 KALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTP-----QPLK 95 (257)
T ss_dssp EEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEECCCCC-----GGGG
T ss_pred eeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEccCC-----ccCC
Confidence 479999999999999999999999999999999999999999999999875 2499999984 3344
Q ss_pred cCChhHHHhhcc-c----------------Cch--HHHHHHHhhhhHH---HHhhcCCCCCChhHHHHHHHHHHHhcCCC
Q psy10767 74 EDSPSYLLEYYN-C----------------STL--EDVFLYLCEQDQI---LFSLVGSESAFGGQQRRVSFAVSLIHDPK 131 (149)
Q Consensus 74 ~~~~~~~~~~~~-~----------------~~~--~~~~~~~~~~~~~---~~~~~~~~~~sgGqkqrv~iaral~~~p~ 131 (149)
..++.++..+.. . ... .+.+.++++.+++ ..+... .|||||||||+|||||+.+|+
T Consensus 96 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--~LSgGqkQrv~iAraL~~~p~ 173 (257)
T 1g6h_A 96 EMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAG--ELSGGQMKLVEIGRALMTNPK 173 (257)
T ss_dssp GSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGG--GSCHHHHHHHHHHHHHHTCCS
T ss_pred CCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCch--hCCHHHHHHHHHHHHHHcCCC
Confidence 556666654421 1 111 2233344444433 222233 459999999999999999999
Q ss_pred EEEEcCCCCCCCcCCC
Q psy10767 132 ILILDEPTVGLDPVLS 147 (149)
Q Consensus 132 illlDEPt~gLD~~~~ 147 (149)
+|||||||+|||+..+
T Consensus 174 lllLDEPts~LD~~~~ 189 (257)
T 1g6h_A 174 MIVMDEPIAGVAPGLA 189 (257)
T ss_dssp EEEEESTTTTCCHHHH
T ss_pred EEEEeCCccCCCHHHH
Confidence 9999999999998754
No 14
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=5.3e-41 Score=259.53 Aligned_cols=137 Identities=26% Similarity=0.385 Sum_probs=106.3
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec--------ceeeeeecCcccccCcccccC
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV--------RDIGYMPQVGLMRSGALLAED 75 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~--------~~i~~~~q~~~~~~~~~~~~~ 75 (149)
.+++++||++++||+++|+||||||||||+|+|+|+++|++|+|.++|.++ +.++|+||++. ++...
T Consensus 29 ~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~~v~q~~~-----l~~~l 103 (256)
T 1vpl_A 29 EILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAG-----AYRNM 103 (256)
T ss_dssp EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEECTTCC-----CCTTS
T ss_pred EEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcEEEEcCCCC-----CCCCC
Confidence 479999999999999999999999999999999999999999999999875 35999999843 33444
Q ss_pred ChhHHHhhc----ccCch--HHHHHHHhhhhHH---HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCC
Q psy10767 76 SPSYLLEYY----NCSTL--EDVFLYLCEQDQI---LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVL 146 (149)
Q Consensus 76 ~~~~~~~~~----~~~~~--~~~~~~~~~~~~~---~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~ 146 (149)
++.++..+. ..... .+.+.++++.+++ ..+... .||||||||++|||||+.+|++|||||||+|||+..
T Consensus 104 tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~--~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~ 181 (256)
T 1vpl_A 104 QGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVS--TYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLN 181 (256)
T ss_dssp BHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGG--GCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHH
T ss_pred cHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChh--hCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHH
Confidence 566655442 11111 1233344444433 233333 459999999999999999999999999999999975
Q ss_pred C
Q psy10767 147 S 147 (149)
Q Consensus 147 ~ 147 (149)
+
T Consensus 182 ~ 182 (256)
T 1vpl_A 182 A 182 (256)
T ss_dssp H
T ss_pred H
Confidence 4
No 15
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=1.1e-40 Score=255.50 Aligned_cols=139 Identities=22% Similarity=0.335 Sum_probs=105.2
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec---------ceeeeeecCcccccCccccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV---------RDIGYMPQVGLMRSGALLAE 74 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~---------~~i~~~~q~~~~~~~~~~~~ 74 (149)
.+++++||++++||+++|+||||||||||+|+|+|+++|++|+|.++|.++ +.++|+||++. ++.
T Consensus 16 ~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~-----l~~- 89 (243)
T 1mv5_A 16 QILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSA-----IMA- 89 (243)
T ss_dssp CSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEECCSSC-----CCC-
T ss_pred ceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEEEcCCCc-----ccc-
Confidence 579999999999999999999999999999999999999999999999765 24899999853 222
Q ss_pred CChhHHHhhc-ccCchHHHHHHHhhhhHH---HHhh---------cCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCC
Q psy10767 75 DSPSYLLEYY-NCSTLEDVFLYLCEQDQI---LFSL---------VGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVG 141 (149)
Q Consensus 75 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~~---------~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~g 141 (149)
.++.++..+. ......+....+++..++ ..+. .....+|||||||++|||||+++|++|||||||++
T Consensus 90 ~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~lllLDEPts~ 169 (243)
T 1mv5_A 90 GTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATAS 169 (243)
T ss_dssp EEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCS
T ss_pred ccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCEEEEECCccc
Confidence 3566665543 111112223333333222 1110 01235699999999999999999999999999999
Q ss_pred CCcCCCC
Q psy10767 142 LDPVLSF 148 (149)
Q Consensus 142 LD~~~~~ 148 (149)
||+..+.
T Consensus 170 LD~~~~~ 176 (243)
T 1mv5_A 170 LDSESES 176 (243)
T ss_dssp SCSSSCC
T ss_pred CCHHHHH
Confidence 9998764
No 16
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=4.5e-41 Score=270.35 Aligned_cols=137 Identities=28% Similarity=0.372 Sum_probs=108.6
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec-------ceeeeeecCcccccCcccccCC
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV-------RDIGYMPQVGLMRSGALLAEDS 76 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~-------~~i~~~~q~~~~~~~~~~~~~~ 76 (149)
.+++|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++ +.|+|+||+. .+++..+
T Consensus 29 ~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~-----~l~~~lt 103 (355)
T 1z47_A 29 RSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVGLVFQNY-----ALFQHMT 103 (355)
T ss_dssp TCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSEEEECGGG-----CCCTTSC
T ss_pred EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcEEEEecCc-----ccCCCCC
Confidence 479999999999999999999999999999999999999999999999876 4699999983 3455567
Q ss_pred hhHHHhhc----ccCc--hHHHHHHHhhhhHH---HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCCC
Q psy10767 77 PSYLLEYY----NCST--LEDVFLYLCEQDQI---LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 77 ~~~~~~~~----~~~~--~~~~~~~~~~~~~~---~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~~ 147 (149)
+.++..+. .... ..+.+.++++.+++ .++... .|||||||||+|||||+.+|++|||||||++||+..+
T Consensus 104 v~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~--~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r 181 (355)
T 1z47_A 104 VYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPH--ELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIR 181 (355)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGG--GSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcc--cCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHH
Confidence 77766542 1111 12334444444443 223333 4599999999999999999999999999999998765
No 17
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=7.5e-41 Score=269.49 Aligned_cols=137 Identities=29% Similarity=0.365 Sum_probs=109.3
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec-------ceeeeeecCcccccCcccccCC
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV-------RDIGYMPQVGLMRSGALLAEDS 76 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~-------~~i~~~~q~~~~~~~~~~~~~~ 76 (149)
.+++++||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++ +.++|+||+ ..+++..+
T Consensus 17 ~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~-----~~l~~~lt 91 (359)
T 2yyz_A 17 KAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVFQN-----YALYPHMT 91 (359)
T ss_dssp EEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECSS-----CCCCTTSC
T ss_pred EEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEEEecC-----cccCCCCC
Confidence 478999999999999999999999999999999999999999999999876 459999998 34455667
Q ss_pred hhHHHhhccc-Cc-h----HHHHHHHhhhhHH---HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCCC
Q psy10767 77 PSYLLEYYNC-ST-L----EDVFLYLCEQDQI---LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 77 ~~~~~~~~~~-~~-~----~~~~~~~~~~~~~---~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~~ 147 (149)
+.++..+... .. . .+.+.++++.+++ .++... .|||||||||+|||||+.+|++|||||||++||+..+
T Consensus 92 v~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~--~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r 169 (359)
T 2yyz_A 92 VFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPT--QLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLR 169 (359)
T ss_dssp HHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGG--GSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChh--hCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHH
Confidence 7777765311 11 1 2234444444443 223333 4599999999999999999999999999999998765
No 18
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=1e-40 Score=269.84 Aligned_cols=139 Identities=29% Similarity=0.357 Sum_probs=106.4
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec-------ceeeeeecCcccccCcccccCC
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV-------RDIGYMPQVGLMRSGALLAEDS 76 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~-------~~i~~~~q~~~~~~~~~~~~~~ 76 (149)
.+++++||++++||+++|+||||||||||||+|+|+++|++|+|.++|+++ +.|+|+||+ ..+++..+
T Consensus 25 ~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~-----~~l~~~lt 99 (372)
T 1v43_A 25 TAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQS-----YAVWPHMT 99 (372)
T ss_dssp EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC-----------CCC
T ss_pred EEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEEEecC-----cccCCCCC
Confidence 478999999999999999999999999999999999999999999999876 359999998 34456677
Q ss_pred hhHHHhhcc----cCc--hHHHHHHHhhhhHHHH-hhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCCC
Q psy10767 77 PSYLLEYYN----CST--LEDVFLYLCEQDQILF-SLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 77 ~~~~~~~~~----~~~--~~~~~~~~~~~~~~~~-~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~~ 147 (149)
+.++..+.. ... ..+.+.++++.+++.. .......|||||||||+|||||+.+|++|||||||++||+..+
T Consensus 100 v~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r 177 (372)
T 1v43_A 100 VYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLR 177 (372)
T ss_dssp HHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHH
Confidence 877776531 111 1233444455444311 1122335699999999999999999999999999999998765
No 19
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=7.2e-41 Score=269.85 Aligned_cols=137 Identities=30% Similarity=0.421 Sum_probs=108.4
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec-------ceeeeeecCcccccCcccccCC
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV-------RDIGYMPQVGLMRSGALLAEDS 76 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~-------~~i~~~~q~~~~~~~~~~~~~~ 76 (149)
.+++++||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++ +.++|+||+. .+++..+
T Consensus 17 ~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~-----~l~~~lt 91 (362)
T 2it1_A 17 TALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVFQNW-----ALYPHMT 91 (362)
T ss_dssp EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECTTC-----CCCTTSC
T ss_pred EEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEEecCc-----ccCCCCC
Confidence 478999999999999999999999999999999999999999999999876 4599999984 4455667
Q ss_pred hhHHHhhc----ccCc--hHHHHHHHhhhhHH---HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCCC
Q psy10767 77 PSYLLEYY----NCST--LEDVFLYLCEQDQI---LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 77 ~~~~~~~~----~~~~--~~~~~~~~~~~~~~---~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~~ 147 (149)
+.++..+. .... ..+.+.++++.+++ .++... .|||||||||+|||||+.+|++|||||||++||+..+
T Consensus 92 v~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~--~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r 169 (362)
T 2it1_A 92 VYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPW--QLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLR 169 (362)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGG--GSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChh--hCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHH
Confidence 77766542 1111 12334444444443 222333 4599999999999999999999999999999998765
No 20
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=9.2e-41 Score=268.53 Aligned_cols=137 Identities=30% Similarity=0.385 Sum_probs=108.8
Q ss_pred ceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec------------ceeeeeecCcccccCccc
Q psy10767 5 SASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV------------RDIGYMPQVGLMRSGALL 72 (149)
Q Consensus 5 ~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~------------~~i~~~~q~~~~~~~~~~ 72 (149)
+++++||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++ +.++|+||+ ..++
T Consensus 20 vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~-----~~l~ 94 (353)
T 1oxx_K 20 ALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQT-----WALY 94 (353)
T ss_dssp EEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETT-----SCCC
T ss_pred eEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhCCEEEEeCC-----CccC
Confidence 79999999999999999999999999999999999999999999999764 349999998 3445
Q ss_pred ccCChhHHHhhccc----Cc--hHHHHHHHhhhhHH---HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCC
Q psy10767 73 AEDSPSYLLEYYNC----ST--LEDVFLYLCEQDQI---LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLD 143 (149)
Q Consensus 73 ~~~~~~~~~~~~~~----~~--~~~~~~~~~~~~~~---~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD 143 (149)
+..++.++..+... .. ..+.+.++++.+++ .++... .|||||||||+|||||+.+|++|||||||++||
T Consensus 95 ~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~--~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD 172 (353)
T 1oxx_K 95 PNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPR--ELSGAQQQRVALARALVKDPSLLLLDEPFSNLD 172 (353)
T ss_dssp TTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGG--GSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSC
T ss_pred CCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChh--hCCHHHHHHHHHHHHHHhCCCEEEEECCcccCC
Confidence 56677777765311 11 12334444444443 222333 459999999999999999999999999999999
Q ss_pred cCCCC
Q psy10767 144 PVLSF 148 (149)
Q Consensus 144 ~~~~~ 148 (149)
+..+.
T Consensus 173 ~~~r~ 177 (353)
T 1oxx_K 173 ARMRD 177 (353)
T ss_dssp GGGHH
T ss_pred HHHHH
Confidence 98753
No 21
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=3e-40 Score=256.29 Aligned_cols=140 Identities=24% Similarity=0.245 Sum_probs=106.5
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec------ceeeeeecCcccccCcccccCCh
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV------RDIGYMPQVGLMRSGALLAEDSP 77 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~------~~i~~~~q~~~~~~~~~~~~~~~ 77 (149)
.+++|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|.++ +.++|+||++. ..+...++
T Consensus 21 ~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~~v~q~~~----~~~~~~tv 96 (266)
T 2yz2_A 21 KALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIGIAFQYPE----DQFFAERV 96 (266)
T ss_dssp EEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGEEEECSSGG----GGCCCSSH
T ss_pred ceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhEEEEeccch----hhcCCCcH
Confidence 479999999999999999999999999999999999999999999999875 35999999842 11223456
Q ss_pred hHHHhhcc---cC--chHHHHHHHhhhhHHH--Hh-hcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCCC
Q psy10767 78 SYLLEYYN---CS--TLEDVFLYLCEQDQIL--FS-LVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 78 ~~~~~~~~---~~--~~~~~~~~~~~~~~~~--~~-~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~~ 147 (149)
.++..+.. .. ...+.+..+++.+++. .. ......||||||||++|||||+.+|++|||||||+|||+..+
T Consensus 97 ~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~ 174 (266)
T 2yz2_A 97 FDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGK 174 (266)
T ss_dssp HHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHH
Confidence 66655421 11 1123344444444332 11 112234699999999999999999999999999999998754
No 22
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=1.6e-40 Score=268.75 Aligned_cols=137 Identities=26% Similarity=0.371 Sum_probs=108.1
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec-------------ceeeeeecCcccccCc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV-------------RDIGYMPQVGLMRSGA 70 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~-------------~~i~~~~q~~~~~~~~ 70 (149)
.+++++||++++||+++|+||||||||||||+|+|+++|++|+|.++|+++ +.|+|+||+. .
T Consensus 17 ~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~-----~ 91 (372)
T 1g29_1 17 TAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSY-----A 91 (372)
T ss_dssp EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCC-----C
T ss_pred EEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhHCCEEEEeCCC-----c
Confidence 478999999999999999999999999999999999999999999999764 2499999983 4
Q ss_pred ccccCChhHHHhhc----ccCc--hHHHHHHHhhhhHH---HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCC
Q psy10767 71 LLAEDSPSYLLEYY----NCST--LEDVFLYLCEQDQI---LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVG 141 (149)
Q Consensus 71 ~~~~~~~~~~~~~~----~~~~--~~~~~~~~~~~~~~---~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~g 141 (149)
+++..++.++..+. .... ..+.+.++++.+++ ..+... .|||||||||+|||||+.+|++|||||||++
T Consensus 92 l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~--~LSGGq~QRvalArAL~~~P~lLLLDEP~s~ 169 (372)
T 1g29_1 92 LYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPR--ELSGGQRQRVALGRAIVRKPQVFLMDEPLSN 169 (372)
T ss_dssp CCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGG--GSCHHHHHHHHHHHHHHTCCSEEEEECTTTT
T ss_pred cCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcc--cCCHHHHHHHHHHHHHhcCCCEEEECCCCcc
Confidence 45566777776542 1111 12334444554443 222333 4599999999999999999999999999999
Q ss_pred CCcCCC
Q psy10767 142 LDPVLS 147 (149)
Q Consensus 142 LD~~~~ 147 (149)
||+..+
T Consensus 170 LD~~~r 175 (372)
T 1g29_1 170 LDAKLR 175 (372)
T ss_dssp SCHHHH
T ss_pred CCHHHH
Confidence 998765
No 23
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=1e-40 Score=255.69 Aligned_cols=135 Identities=27% Similarity=0.376 Sum_probs=105.2
Q ss_pred ceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec-------ceeeeeecCcccccCcccccCCh
Q psy10767 5 SASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV-------RDIGYMPQVGLMRSGALLAEDSP 77 (149)
Q Consensus 5 ~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~-------~~i~~~~q~~~~~~~~~~~~~~~ 77 (149)
.++|+||++++ |+++|+||||||||||+|+|+|+++|++|+|.++|+++ +.++|+||++ .+++..++
T Consensus 14 ~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~-----~l~~~ltv 87 (240)
T 2onk_A 14 FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDY-----ALFPHLSV 87 (240)
T ss_dssp EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSSC-----CCCTTSCH
T ss_pred EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEEcCCC-----ccCCCCcH
Confidence 38999999999 99999999999999999999999999999999999875 3599999984 33445567
Q ss_pred hHHHhhccc-Cc---hHHHHHHHhhhhHH---HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCCC
Q psy10767 78 SYLLEYYNC-ST---LEDVFLYLCEQDQI---LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 78 ~~~~~~~~~-~~---~~~~~~~~~~~~~~---~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~~ 147 (149)
.++..+... .. ..+.+..+++.+++ .++.. ..+|||||||++|||||+.+|+++||||||+|||+..+
T Consensus 88 ~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~~ 162 (240)
T 2onk_A 88 YRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKP--ARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTK 162 (240)
T ss_dssp HHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCG--GGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHH
T ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHhcCCh--hhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHH
Confidence 777655321 11 12233344444443 12222 34599999999999999999999999999999999754
No 24
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=1.3e-40 Score=267.19 Aligned_cols=135 Identities=32% Similarity=0.402 Sum_probs=108.0
Q ss_pred ceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec-------ceeeeeecCcccccCcccccCCh
Q psy10767 5 SASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV-------RDIGYMPQVGLMRSGALLAEDSP 77 (149)
Q Consensus 5 ~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~-------~~i~~~~q~~~~~~~~~~~~~~~ 77 (149)
+++++||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++ +.++|+||+. .+++..++
T Consensus 15 ~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~-----~l~~~ltv 89 (348)
T 3d31_A 15 SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNY-----SLFPHMNV 89 (348)
T ss_dssp EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECTTC-----CCCTTSCH
T ss_pred EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEEecCc-----ccCCCCCH
Confidence 78999999999999999999999999999999999999999999999876 3599999983 44556667
Q ss_pred hHHHhhc----ccCchHHHHHHHhhhhHH---HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCCC
Q psy10767 78 SYLLEYY----NCSTLEDVFLYLCEQDQI---LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 78 ~~~~~~~----~~~~~~~~~~~~~~~~~~---~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~~ 147 (149)
.++..+. ..... +.+.++++.+++ .++... .|||||||||+|||||+.+|++|||||||++||+..+
T Consensus 90 ~enl~~~~~~~~~~~~-~~v~~~l~~~~L~~~~~~~~~--~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~ 163 (348)
T 3d31_A 90 KKNLEFGMRMKKIKDP-KRVLDTARDLKIEHLLDRNPL--TLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQ 163 (348)
T ss_dssp HHHHHHHHHHHCCCCH-HHHHHHHHHTTCTTTTTSCGG--GSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHH
T ss_pred HHHHHHHHHHcCCCHH-HHHHHHHHHcCCchHhcCChh--hCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHH
Confidence 7766542 11111 334444444443 223333 4599999999999999999999999999999998765
No 25
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=3.5e-40 Score=260.69 Aligned_cols=138 Identities=25% Similarity=0.450 Sum_probs=105.0
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeecc---------eeeeeecCcccccCccccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVR---------DIGYMPQVGLMRSGALLAE 74 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~~---------~i~~~~q~~~~~~~~~~~~ 74 (149)
++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++. .|+|+||++. ++ .
T Consensus 68 ~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~-----lf-~ 141 (306)
T 3nh6_A 68 ETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTV-----LF-N 141 (306)
T ss_dssp EEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCC-----CC-S
T ss_pred ceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCc-----cC-c
Confidence 5799999999999999999999999999999999999999999999998863 4999999853 33 2
Q ss_pred CChhHHHhhcccCchHHHHHHHhhhhHH---HHhh-------cC--CCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCC
Q psy10767 75 DSPSYLLEYYNCSTLEDVFLYLCEQDQI---LFSL-------VG--SESAFGGQQRRVSFAVSLIHDPKILILDEPTVGL 142 (149)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-------~~--~~~~sgGqkqrv~iaral~~~p~illlDEPt~gL 142 (149)
.++.++..+.......+....+++...+ .... .+ ...||||||||++|||||+.+|+||||||||++|
T Consensus 142 ~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~L 221 (306)
T 3nh6_A 142 DTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSAL 221 (306)
T ss_dssp EEHHHHHHTTSTTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCC
T ss_pred ccHHHHHHhhcccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccC
Confidence 3677776654322112222222222211 1111 11 1356999999999999999999999999999999
Q ss_pred CcCCC
Q psy10767 143 DPVLS 147 (149)
Q Consensus 143 D~~~~ 147 (149)
|+..+
T Consensus 222 D~~~~ 226 (306)
T 3nh6_A 222 DTSNE 226 (306)
T ss_dssp CHHHH
T ss_pred CHHHH
Confidence 98653
No 26
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=1.9e-40 Score=259.17 Aligned_cols=139 Identities=23% Similarity=0.272 Sum_probs=104.5
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeecc-----------eeeeeecCcccccCccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVR-----------DIGYMPQVGLMRSGALL 72 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~~-----------~i~~~~q~~~~~~~~~~ 72 (149)
++++|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|.++. .|+|+||++... ..
T Consensus 35 ~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~---~~ 111 (279)
T 2ihy_A 35 TILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEK---FQ 111 (279)
T ss_dssp EEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTTEEEECHHHHTT---SC
T ss_pred EEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCcEEEEEcCcccc---cC
Confidence 4799999999999999999999999999999999999999999999997643 499999974321 11
Q ss_pred ccCChhHHHhhcc--------cCch--HHHHHHHhhhhHH---HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCC
Q psy10767 73 AEDSPSYLLEYYN--------CSTL--EDVFLYLCEQDQI---LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPT 139 (149)
Q Consensus 73 ~~~~~~~~~~~~~--------~~~~--~~~~~~~~~~~~~---~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt 139 (149)
...++.++..+.. .... .+.+..+++.+++ ..+... .|||||||||+|||||+.+|++|||||||
T Consensus 112 ~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~--~LSgGqkqRv~lAraL~~~p~lLlLDEPt 189 (279)
T 2ihy_A 112 EGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIG--YLSTGEKQRVMIARALMGQPQVLILDEPA 189 (279)
T ss_dssp TTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGG--GSCHHHHHHHHHHHHHHTCCSEEEEESTT
T ss_pred CCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChh--hCCHHHHHHHHHHHHHhCCCCEEEEeCCc
Confidence 1235666654321 0111 2223344444433 222333 45999999999999999999999999999
Q ss_pred CCCCcCCC
Q psy10767 140 VGLDPVLS 147 (149)
Q Consensus 140 ~gLD~~~~ 147 (149)
+|||+..+
T Consensus 190 s~LD~~~~ 197 (279)
T 2ihy_A 190 AGLDFIAR 197 (279)
T ss_dssp TTCCHHHH
T ss_pred cccCHHHH
Confidence 99998754
No 27
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=1.7e-39 Score=247.18 Aligned_cols=133 Identities=22% Similarity=0.282 Sum_probs=100.4
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeecceeeeeecCcccccCcccccCChhHHHhh
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAEDSPSYLLEY 83 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~ 83 (149)
++++++||++++||+++|+||||||||||+|+|+|+++|++|+|.++| .++|+||++. ++. .++.++..+
T Consensus 22 ~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g----~i~~v~q~~~-----~~~-~tv~enl~~ 91 (229)
T 2pze_A 22 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG----RISFCSQFSW-----IMP-GTIKENIIF 91 (229)
T ss_dssp CSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS----CEEEECSSCC-----CCS-BCHHHHHHT
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC----EEEEEecCCc-----ccC-CCHHHHhhc
Confidence 589999999999999999999999999999999999999999999998 4999999843 333 367777655
Q ss_pred cccCchHHHHHHHhhhh---HHHHhh-------c--CCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCCC
Q psy10767 84 YNCSTLEDVFLYLCEQD---QILFSL-------V--GSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 84 ~~~~~~~~~~~~~~~~~---~~~~~~-------~--~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~~ 147 (149)
...... .......+.. ...... . ....+|||||||++|||||+.+|+++||||||++||+..+
T Consensus 92 ~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~ 166 (229)
T 2pze_A 92 GVSYDE-YRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTE 166 (229)
T ss_dssp TSCCCH-HHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHH
T ss_pred cCCcCh-HHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHH
Confidence 321111 1111111111 111110 0 1245699999999999999999999999999999998754
No 28
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=1.3e-39 Score=253.48 Aligned_cols=136 Identities=24% Similarity=0.298 Sum_probs=102.6
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec---------ceeeeeecCcccccCccccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV---------RDIGYMPQVGLMRSGALLAE 74 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~---------~~i~~~~q~~~~~~~~~~~~ 74 (149)
.+++++||++++||+++|+||||||||||+|+|+|+++|++|+|.++|.++ +.|+|+||++. ++.
T Consensus 33 ~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~-----l~~- 106 (271)
T 2ixe_A 33 QVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPL-----LFG- 106 (271)
T ss_dssp CCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHEEEECSSCC-----CCS-
T ss_pred eeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhccEEEEecCCc-----ccc-
Confidence 579999999999999999999999999999999999999999999999875 24999999843 233
Q ss_pred CChhHHHhhcccC-ch-HHH---H-----HHHhhhh--HH---HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCC
Q psy10767 75 DSPSYLLEYYNCS-TL-EDV---F-----LYLCEQD--QI---LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPT 139 (149)
Q Consensus 75 ~~~~~~~~~~~~~-~~-~~~---~-----~~~~~~~--~~---~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt 139 (149)
.++.++..+.... .. ... . ..+++.+ ++ ..+.. ..|||||||||+|||||+.+|++|||||||
T Consensus 107 ~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~--~~LSgGq~QRv~lAraL~~~p~lllLDEPt 184 (271)
T 2ixe_A 107 RSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETG--NQLSGGQRQAVALARALIRKPRLLILDNAT 184 (271)
T ss_dssp SBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGG--TTSCHHHHHHHHHHHHHTTCCSEEEEESTT
T ss_pred ccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCc--CCCCHHHHHHHHHHHHHhcCCCEEEEECCc
Confidence 3666766553211 11 111 0 0111111 11 11222 346999999999999999999999999999
Q ss_pred CCCCcCCC
Q psy10767 140 VGLDPVLS 147 (149)
Q Consensus 140 ~gLD~~~~ 147 (149)
++||+..+
T Consensus 185 s~LD~~~~ 192 (271)
T 2ixe_A 185 SALDAGNQ 192 (271)
T ss_dssp TTCCHHHH
T ss_pred cCCCHHHH
Confidence 99998754
No 29
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=1.9e-39 Score=251.12 Aligned_cols=137 Identities=27% Similarity=0.425 Sum_probs=102.6
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec---------ceeeeeecCcccccCccccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV---------RDIGYMPQVGLMRSGALLAE 74 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~---------~~i~~~~q~~~~~~~~~~~~ 74 (149)
++++++||++++||+++|+||||||||||+|+|+|+++| +|+|.++|.++ +.|+|+||++. ++.
T Consensus 34 ~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~-----l~~- 106 (260)
T 2ghi_A 34 RTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTI-----LFN- 106 (260)
T ss_dssp CSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTTEEEECSSCC-----CCS-
T ss_pred ceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhccEEEEcCCCc-----ccc-
Confidence 589999999999999999999999999999999999987 89999999875 34999999853 232
Q ss_pred CChhHHHhhcccCchHHHHHHHhhhhHH---HHhh---------cCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCC
Q psy10767 75 DSPSYLLEYYNCSTLEDVFLYLCEQDQI---LFSL---------VGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGL 142 (149)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~---------~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gL 142 (149)
.++.++..+.......+.....++..++ .... .....+|||||||++|||||+.+|++|||||||++|
T Consensus 107 ~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~L 186 (260)
T 2ghi_A 107 ETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSL 186 (260)
T ss_dssp EEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTT
T ss_pred cCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccC
Confidence 3666666543211112222222222221 1110 112356999999999999999999999999999999
Q ss_pred CcCCC
Q psy10767 143 DPVLS 147 (149)
Q Consensus 143 D~~~~ 147 (149)
|+..+
T Consensus 187 D~~~~ 191 (260)
T 2ghi_A 187 DSKTE 191 (260)
T ss_dssp CHHHH
T ss_pred CHHHH
Confidence 98754
No 30
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=8.7e-40 Score=251.79 Aligned_cols=136 Identities=21% Similarity=0.260 Sum_probs=106.2
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec---------ceeeeeecCcccccCccccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV---------RDIGYMPQVGLMRSGALLAE 74 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~---------~~i~~~~q~~~~~~~~~~~~ 74 (149)
.+++++||++++||+++|+||||||||||+|+|+|+++|+ |+|.++|.++ +.++|+||++. ++..
T Consensus 14 ~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~-----~~~~ 87 (249)
T 2qi9_C 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRAYLSQQQT-----PPFA 87 (249)
T ss_dssp TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEEEECSCCC-----CCTT
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEEEECCCCc-----cCCC
Confidence 4789999999999999999999999999999999999999 9999999875 24999999843 3344
Q ss_pred CChhHHHhhcccCc-hHHHHHHHhhhhHH---HHhhcCCCCCChhHHHHHHHHHHHhcCCC-------EEEEcCCCCCCC
Q psy10767 75 DSPSYLLEYYNCST-LEDVFLYLCEQDQI---LFSLVGSESAFGGQQRRVSFAVSLIHDPK-------ILILDEPTVGLD 143 (149)
Q Consensus 75 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~sgGqkqrv~iaral~~~p~-------illlDEPt~gLD 143 (149)
.++.++..+..... ..+.+..+++.+++ ..+... .||||||||++|||||+.+|+ +|||||||+|||
T Consensus 88 ~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD 165 (249)
T 2qi9_C 88 TPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTN--QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLD 165 (249)
T ss_dssp CBHHHHHHTTCSSTTCHHHHHHHHHHTTCGGGTTSBGG--GCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCC
T ss_pred CcHHHHHHHhhccCCcHHHHHHHHHHcCChhHhcCChh--hCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCC
Confidence 56777665532111 13334444444433 222333 459999999999999999999 999999999999
Q ss_pred cCCC
Q psy10767 144 PVLS 147 (149)
Q Consensus 144 ~~~~ 147 (149)
+..+
T Consensus 166 ~~~~ 169 (249)
T 2qi9_C 166 VAQQ 169 (249)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8754
No 31
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=6.3e-40 Score=252.40 Aligned_cols=139 Identities=19% Similarity=0.171 Sum_probs=99.0
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcC--ccCCcceEEECCeecc----------eeeeeecCcccccCcc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNR--LRLDHGSISLSARTVR----------DIGYMPQVGLMRSGAL 71 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~--~~~~~G~i~~~g~~~~----------~i~~~~q~~~~~~~~~ 71 (149)
.+++|+||++++||+++|+||||||||||+|+|+|+ ++|++|+|.++|.++. .++|+||++.+
T Consensus 17 ~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~----- 91 (250)
T 2d2e_A 17 TILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGLFLAFQYPVE----- 91 (250)
T ss_dssp EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTBCCCCCCCC------
T ss_pred EEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCcEEEeccCCcc-----
Confidence 479999999999999999999999999999999998 8899999999998752 37899998533
Q ss_pred cccCChhHHHhhc-----cc-Cc---hHHHHHHHhhhhHH-HH-hhcCCCC-CChhHHHHHHHHHHHhcCCCEEEEcCCC
Q psy10767 72 LAEDSPSYLLEYY-----NC-ST---LEDVFLYLCEQDQI-LF-SLVGSES-AFGGQQRRVSFAVSLIHDPKILILDEPT 139 (149)
Q Consensus 72 ~~~~~~~~~~~~~-----~~-~~---~~~~~~~~~~~~~~-~~-~~~~~~~-~sgGqkqrv~iaral~~~p~illlDEPt 139 (149)
++..++.++..+. .. .. ..+.+..+++.+++ .. ....... +|||||||++|||||+.+|++|||||||
T Consensus 92 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPt 171 (250)
T 2d2e_A 92 VPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETD 171 (250)
T ss_dssp CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHHCCSEEEEECGG
T ss_pred ccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 3334444444321 11 01 12223334444333 11 1112233 6999999999999999999999999999
Q ss_pred CCCCcCCC
Q psy10767 140 VGLDPVLS 147 (149)
Q Consensus 140 ~gLD~~~~ 147 (149)
+|||+..+
T Consensus 172 s~LD~~~~ 179 (250)
T 2d2e_A 172 SGLDIDAL 179 (250)
T ss_dssp GTTCHHHH
T ss_pred cCCCHHHH
Confidence 99998754
No 32
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=2.1e-39 Score=247.84 Aligned_cols=134 Identities=21% Similarity=0.332 Sum_probs=100.9
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeecceeeeeecCcccccCcccccCChhHHHhh
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAEDSPSYLLEY 83 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~ 83 (149)
++++++||++++||+++|+||||||||||+|+|+|+++|++|+|.++| .++|+||++.+ ...++.++..+
T Consensus 19 ~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g----~i~~v~Q~~~~------~~~tv~enl~~ 88 (237)
T 2cbz_A 19 PTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG----SVAYVPQQAWI------QNDSLRENILF 88 (237)
T ss_dssp CSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS----CEEEECSSCCC------CSEEHHHHHHT
T ss_pred ceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC----EEEEEcCCCcC------CCcCHHHHhhC
Confidence 589999999999999999999999999999999999999999999998 49999998422 24456666655
Q ss_pred ccc-C-chHHHHHHHhhhhHHHHh---------hcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCCC
Q psy10767 84 YNC-S-TLEDVFLYLCEQDQILFS---------LVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 84 ~~~-~-~~~~~~~~~~~~~~~~~~---------~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~~ 147 (149)
... . .................. ......+|||||||++|||||+.+|++|||||||++||+..+
T Consensus 89 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~ 163 (237)
T 2cbz_A 89 GCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVG 163 (237)
T ss_dssp TSCCCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHH
T ss_pred ccccCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHH
Confidence 321 1 111112222111111100 112235699999999999999999999999999999999754
No 33
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=1.9e-39 Score=250.34 Aligned_cols=133 Identities=25% Similarity=0.275 Sum_probs=102.2
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeecceeeeeecCcccccCcccccCChhHHHhh
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAEDSPSYLLEY 83 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~ 83 (149)
.+++++||++++||+++|+||||||||||+|+|+|+++|++|+|.+. +.++|+||++.+ +...++.++..+
T Consensus 19 ~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~----~~i~~v~q~~~~-----~~~~tv~enl~~ 89 (253)
T 2nq2_C 19 FLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVY----QSIGFVPQFFSS-----PFAYSVLDIVLM 89 (253)
T ss_dssp EEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEEC----SCEEEECSCCCC-----SSCCBHHHHHHG
T ss_pred eEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEe----ccEEEEcCCCcc-----CCCCCHHHHHHH
Confidence 57999999999999999999999999999999999999999999942 469999998432 334456666544
Q ss_pred ccc--------Cch--HHHHHHHhhhhHH---HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCCC
Q psy10767 84 YNC--------STL--EDVFLYLCEQDQI---LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 84 ~~~--------~~~--~~~~~~~~~~~~~---~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~~ 147 (149)
... ... .+.+..+++.+++ ..+... .+|||||||++|||||+.+|++|||||||+|||+..+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~ 164 (253)
T 2nq2_C 90 GRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFT--SLSGGQRQLILIARAIASECKLILLDEPTSALDLANQ 164 (253)
T ss_dssp GGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGG--GSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHH
T ss_pred hhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChh--hCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHH
Confidence 210 111 2333444444433 222233 4599999999999999999999999999999998754
No 34
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=2.3e-39 Score=251.50 Aligned_cols=139 Identities=19% Similarity=0.249 Sum_probs=101.3
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcC--ccCCcceEEECCeecc----------eeeeeecCcccccCcc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNR--LRLDHGSISLSARTVR----------DIGYMPQVGLMRSGAL 71 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~--~~~~~G~i~~~g~~~~----------~i~~~~q~~~~~~~~~ 71 (149)
.+++|+||++++||+++|+||||||||||+|+|+|+ ++|++|+|.++|.++. .++|++|++.+
T Consensus 34 ~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~l----- 108 (267)
T 2zu0_C 34 AILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVE----- 108 (267)
T ss_dssp EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHTEEEECSSCCC-----
T ss_pred EEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCCEEEEccCccc-----
Confidence 479999999999999999999999999999999999 5789999999998752 38999998533
Q ss_pred cccCChhHHHhh--------cccC--ch---HHHHHHHhhhhHHHHh--hcCCC-CCChhHHHHHHHHHHHhcCCCEEEE
Q psy10767 72 LAEDSPSYLLEY--------YNCS--TL---EDVFLYLCEQDQILFS--LVGSE-SAFGGQQRRVSFAVSLIHDPKILIL 135 (149)
Q Consensus 72 ~~~~~~~~~~~~--------~~~~--~~---~~~~~~~~~~~~~~~~--~~~~~-~~sgGqkqrv~iaral~~~p~illl 135 (149)
++..++.++..+ .... .. .+.+.++++.+++... ..... .|||||||||+|||||+.+|++|||
T Consensus 109 ~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iAraL~~~p~lLlL 188 (267)
T 2zu0_C 109 IPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCIL 188 (267)
T ss_dssp CTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHHHHHHHCCSEEEE
T ss_pred cccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 233333333221 1110 11 1223344444433111 11112 3699999999999999999999999
Q ss_pred cCCCCCCCcCCC
Q psy10767 136 DEPTVGLDPVLS 147 (149)
Q Consensus 136 DEPt~gLD~~~~ 147 (149)
||||+|||+..+
T Consensus 189 DEPts~LD~~~~ 200 (267)
T 2zu0_C 189 DESDSGLDIDAL 200 (267)
T ss_dssp ESTTTTCCHHHH
T ss_pred eCCCCCCCHHHH
Confidence 999999998754
No 35
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=5.2e-39 Score=249.24 Aligned_cols=133 Identities=26% Similarity=0.298 Sum_probs=102.9
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec------ceee-eeecCcccccCcccccCC
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV------RDIG-YMPQVGLMRSGALLAEDS 76 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~------~~i~-~~~q~~~~~~~~~~~~~~ 76 (149)
++++++||+++ ||+++|+||||||||||+|+|+|++ |++|+|.++|.++ +.++ |+||++.+ ..+
T Consensus 19 ~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l-------~~t 89 (263)
T 2pjz_A 19 FSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYIRYSTNLPEAYEI-------GVT 89 (263)
T ss_dssp EEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGCSCCTTEEECCGGGSCT-------TSB
T ss_pred eeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcchHHhhheEEEeCCCCcc-------CCc
Confidence 57999999999 9999999999999999999999999 9999999999765 2599 99998432 445
Q ss_pred hhHHHhhccc--CchHHHHHHHhhhhHH----HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCCC
Q psy10767 77 PSYLLEYYNC--STLEDVFLYLCEQDQI----LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 77 ~~~~~~~~~~--~~~~~~~~~~~~~~~~----~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~~ 147 (149)
+.++..+... ....+.+..+++.+++ ..+... .||||||||++|||||+.+|++|||||||++||+..+
T Consensus 90 v~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~--~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~ 164 (263)
T 2pjz_A 90 VNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLY--KLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARR 164 (263)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGGGGSBGG--GSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHH
T ss_pred HHHHHHHhhhhcchHHHHHHHHHHHcCCChhHhcCChh--hCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHH
Confidence 5555544210 1122333344443332 223333 4599999999999999999999999999999998754
No 36
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=2.7e-38 Score=248.27 Aligned_cols=132 Identities=24% Similarity=0.280 Sum_probs=98.3
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeecceeeeeecCcccccCcccccCChhHHHhh
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAEDSPSYLLEY 83 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~ 83 (149)
.+++++||++++||+++|+||||||||||+|+|+|+++|++|+|.++| .++|+||++.+ +. .++.++..
T Consensus 52 ~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g----~i~~v~Q~~~l-----~~-~tv~enl~- 120 (290)
T 2bbs_A 52 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG----RISFCSQNSWI-----MP-GTIKENII- 120 (290)
T ss_dssp CSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS----CEEEECSSCCC-----CS-SBHHHHHH-
T ss_pred eEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC----EEEEEeCCCcc-----Cc-ccHHHHhh-
Confidence 479999999999999999999999999999999999999999999998 49999998432 22 25666654
Q ss_pred cccCchHHHHHHHhhhhH---HHHhhc---------CCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCCC
Q psy10767 84 YNCSTLEDVFLYLCEQDQ---ILFSLV---------GSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~---~~~~~~---------~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~~ 147 (149)
. ............+..+ ...... ....+|||||||++|||||+.+|++|||||||++||+..+
T Consensus 121 ~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~ 195 (290)
T 2bbs_A 121 G-VSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTE 195 (290)
T ss_dssp T-TCCCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHH
T ss_pred C-cccchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHH
Confidence 2 1111111111111111 111110 1135699999999999999999999999999999998754
No 37
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.5e-38 Score=258.47 Aligned_cols=136 Identities=25% Similarity=0.377 Sum_probs=104.7
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec---------ceeeeeecCcccccCccccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV---------RDIGYMPQVGLMRSGALLAE 74 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~---------~~i~~~~q~~~~~~~~~~~~ 74 (149)
.+|+++||+|++||+++|+||||||||||+|+|+|+++ ++|+|+++|+++ +.++|+||+..+ +.
T Consensus 35 ~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr~ig~v~Q~~~l-----f~- 107 (390)
T 3gd7_A 35 AILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRKAFGVIPQKVFI-----FS- 107 (390)
T ss_dssp CSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHHHTEEEESCCCCC-----CS-
T ss_pred EEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHhCCEEEEcCCccc-----Cc-
Confidence 58999999999999999999999999999999999998 899999999875 359999998533 22
Q ss_pred CChhHHHhhcccCchHHHHHHHhhhhHH---HHhhcCC---------CCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCC
Q psy10767 75 DSPSYLLEYYNCSTLEDVFLYLCEQDQI---LFSLVGS---------ESAFGGQQRRVSFAVSLIHDPKILILDEPTVGL 142 (149)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~---------~~~sgGqkqrv~iaral~~~p~illlDEPt~gL 142 (149)
.++.++....... ..+...++++..++ ..+.... ..|||||||||+|||||+.+|++|||||||++|
T Consensus 108 ~tv~enl~~~~~~-~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~L 186 (390)
T 3gd7_A 108 GTFRKNLDPNAAH-SDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHL 186 (390)
T ss_dssp EEHHHHHCTTCCS-CHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHS
T ss_pred cCHHHHhhhcccc-CHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCC
Confidence 3566666533222 22333333333332 2222222 126999999999999999999999999999999
Q ss_pred CcCCC
Q psy10767 143 DPVLS 147 (149)
Q Consensus 143 D~~~~ 147 (149)
|+..+
T Consensus 187 D~~~~ 191 (390)
T 3gd7_A 187 DPVTY 191 (390)
T ss_dssp CHHHH
T ss_pred CHHHH
Confidence 98754
No 38
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=1.9e-37 Score=262.63 Aligned_cols=138 Identities=28% Similarity=0.347 Sum_probs=106.1
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec---------ceeeeeecCcccccCccccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV---------RDIGYMPQVGLMRSGALLAE 74 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~---------~~i~~~~q~~~~~~~~~~~~ 74 (149)
++++|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++ +.++|+||++. ++.
T Consensus 357 ~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~-----l~~- 430 (582)
T 3b5x_A 357 PALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVH-----LFN- 430 (582)
T ss_pred cccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCeEEEcCCCc-----ccc-
Confidence 589999999999999999999999999999999999999999999999876 35999999853 332
Q ss_pred CChhHHHhhcc-cCchHHHHHHHhhhhHH---HHhhc---------CCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCC
Q psy10767 75 DSPSYLLEYYN-CSTLEDVFLYLCEQDQI---LFSLV---------GSESAFGGQQRRVSFAVSLIHDPKILILDEPTVG 141 (149)
Q Consensus 75 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~~~---------~~~~~sgGqkqrv~iaral~~~p~illlDEPt~g 141 (149)
.++.++..+.. ....++...++++..+. ..... ....+|||||||++||||++++|+++||||||++
T Consensus 431 ~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~illlDEpts~ 510 (582)
T 3b5x_A 431 DTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSA 510 (582)
T ss_pred ccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECcccc
Confidence 36667665532 11122333333333222 11111 1235799999999999999999999999999999
Q ss_pred CCcCCC
Q psy10767 142 LDPVLS 147 (149)
Q Consensus 142 LD~~~~ 147 (149)
||+..+
T Consensus 511 LD~~~~ 516 (582)
T 3b5x_A 511 LDTESE 516 (582)
T ss_pred CCHHHH
Confidence 999764
No 39
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=1.6e-37 Score=263.02 Aligned_cols=138 Identities=25% Similarity=0.340 Sum_probs=106.7
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeecc---------eeeeeecCcccccCccccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVR---------DIGYMPQVGLMRSGALLAE 74 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~~---------~i~~~~q~~~~~~~~~~~~ 74 (149)
++++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|+++. .++|+||++. ++.
T Consensus 357 ~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~-----l~~- 430 (582)
T 3b60_A 357 PALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVH-----LFN- 430 (582)
T ss_dssp CSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEEECSSCC-----CCS-
T ss_pred ccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhCeEEccCCc-----CCC-
Confidence 5899999999999999999999999999999999999999999999998762 5999999853 333
Q ss_pred CChhHHHhhcc-cCchHHHHHHHhhhhHH---HHhh-------c--CCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCC
Q psy10767 75 DSPSYLLEYYN-CSTLEDVFLYLCEQDQI---LFSL-------V--GSESAFGGQQRRVSFAVSLIHDPKILILDEPTVG 141 (149)
Q Consensus 75 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~~-------~--~~~~~sgGqkqrv~iaral~~~p~illlDEPt~g 141 (149)
.++.++..+.. ....++...++++..+. ..+. . ....+|||||||++||||++++|+++||||||++
T Consensus 431 ~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p~illlDEpts~ 510 (582)
T 3b60_A 431 DTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSA 510 (582)
T ss_dssp SBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSS
T ss_pred CCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECcccc
Confidence 36777776532 12223333333333222 1111 1 1235799999999999999999999999999999
Q ss_pred CCcCCC
Q psy10767 142 LDPVLS 147 (149)
Q Consensus 142 LD~~~~ 147 (149)
||+..+
T Consensus 511 LD~~~~ 516 (582)
T 3b60_A 511 LDTESE 516 (582)
T ss_dssp CCHHHH
T ss_pred CCHHHH
Confidence 998754
No 40
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=2.7e-37 Score=261.61 Aligned_cols=138 Identities=26% Similarity=0.372 Sum_probs=105.2
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeecc---------eeeeeecCcccccCccccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVR---------DIGYMPQVGLMRSGALLAE 74 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~~---------~i~~~~q~~~~~~~~~~~~ 74 (149)
++++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.+++ .++|+||++. ++.
T Consensus 355 ~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~-----l~~- 428 (578)
T 4a82_A 355 PILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNI-----LFS- 428 (578)
T ss_dssp CSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCC-----CCS-
T ss_pred cceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhheEEEeCCCc-----cCc-
Confidence 5899999999999999999999999999999999999999999999998863 5999999843 332
Q ss_pred CChhHHHhhcccCchHHHHHHHhhhhHH---HHhh-------cC--CCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCC
Q psy10767 75 DSPSYLLEYYNCSTLEDVFLYLCEQDQI---LFSL-------VG--SESAFGGQQRRVSFAVSLIHDPKILILDEPTVGL 142 (149)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-------~~--~~~~sgGqkqrv~iaral~~~p~illlDEPt~gL 142 (149)
.++.++..+......++...+..+..+. .... .+ ...+|||||||++||||++++|+++||||||++|
T Consensus 429 ~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~L 508 (578)
T 4a82_A 429 DTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSAL 508 (578)
T ss_dssp SBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTC
T ss_pred ccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccC
Confidence 3677776653222222222222222111 1111 11 1256999999999999999999999999999999
Q ss_pred CcCCC
Q psy10767 143 DPVLS 147 (149)
Q Consensus 143 D~~~~ 147 (149)
|+..+
T Consensus 509 D~~~~ 513 (578)
T 4a82_A 509 DLESE 513 (578)
T ss_dssp CHHHH
T ss_pred CHHHH
Confidence 98653
No 41
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=2.1e-37 Score=262.89 Aligned_cols=138 Identities=30% Similarity=0.417 Sum_probs=106.6
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeecc---------eeeeeecCcccccCccccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVR---------DIGYMPQVGLMRSGALLAE 74 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~~---------~i~~~~q~~~~~~~~~~~~ 74 (149)
++++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|+++. .++|+||++. ++.
T Consensus 358 ~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~Q~~~-----l~~- 431 (595)
T 2yl4_A 358 PIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPI-----LFS- 431 (595)
T ss_dssp EEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBCHHHHHHSEEEECSSCC-----CCS-
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhCCHHHHHhceEEEccCCc-----ccC-
Confidence 5899999999999999999999999999999999999999999999998762 5999999853 333
Q ss_pred CChhHHHhhcccC---chHHHHHHHhhhhHH---H-------HhhcC--CCCCChhHHHHHHHHHHHhcCCCEEEEcCCC
Q psy10767 75 DSPSYLLEYYNCS---TLEDVFLYLCEQDQI---L-------FSLVG--SESAFGGQQRRVSFAVSLIHDPKILILDEPT 139 (149)
Q Consensus 75 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~---~-------~~~~~--~~~~sgGqkqrv~iaral~~~p~illlDEPt 139 (149)
.++.++..+.... ..++...++++..+. . +..++ ...+|||||||++||||++++|+++||||||
T Consensus 432 ~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAral~~~p~illlDEpt 511 (595)
T 2yl4_A 432 CSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEAT 511 (595)
T ss_dssp SBHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHHHHHCCSEEEEECCC
T ss_pred CCHHHHHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECcc
Confidence 4677777653221 123333333333221 1 11111 1457999999999999999999999999999
Q ss_pred CCCCcCCC
Q psy10767 140 VGLDPVLS 147 (149)
Q Consensus 140 ~gLD~~~~ 147 (149)
++||+..+
T Consensus 512 s~LD~~~~ 519 (595)
T 2yl4_A 512 SALDAENE 519 (595)
T ss_dssp SSCCHHHH
T ss_pred cCCCHHHH
Confidence 99998754
No 42
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=5.1e-37 Score=260.85 Aligned_cols=138 Identities=24% Similarity=0.343 Sum_probs=104.7
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeecc---------eeeeeecCcccccCccccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVR---------DIGYMPQVGLMRSGALLAE 74 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~~---------~i~~~~q~~~~~~~~~~~~ 74 (149)
++++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.+++ .++|+||++.+ + .
T Consensus 369 ~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~l-----f-~ 442 (598)
T 3qf4_B 369 PVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTIL-----F-S 442 (598)
T ss_dssp CSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECTTCCC-----C-S
T ss_pred ccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceEEEeCCCcc-----c-c
Confidence 5899999999999999999999999999999999999999999999998873 59999998533 3 2
Q ss_pred CChhHHHhhcccCchHHHHHHHhhhhHH---HHhhcC---------CCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCC
Q psy10767 75 DSPSYLLEYYNCSTLEDVFLYLCEQDQI---LFSLVG---------SESAFGGQQRRVSFAVSLIHDPKILILDEPTVGL 142 (149)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~---------~~~~sgGqkqrv~iaral~~~p~illlDEPt~gL 142 (149)
.++.++..+......++...+..+.... ...... ...+|||||||++||||++++|++|||||||++|
T Consensus 443 ~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~illlDEpts~L 522 (598)
T 3qf4_B 443 TTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNV 522 (598)
T ss_dssp SBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTC
T ss_pred ccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCC
Confidence 4667776553221112222222222211 111110 0246999999999999999999999999999999
Q ss_pred CcCCC
Q psy10767 143 DPVLS 147 (149)
Q Consensus 143 D~~~~ 147 (149)
|+..+
T Consensus 523 D~~~~ 527 (598)
T 3qf4_B 523 DTKTE 527 (598)
T ss_dssp CHHHH
T ss_pred CHHHH
Confidence 98653
No 43
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=8.4e-37 Score=259.09 Aligned_cols=138 Identities=26% Similarity=0.382 Sum_probs=104.6
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec---------ceeeeeecCcccccCccccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV---------RDIGYMPQVGLMRSGALLAE 74 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~---------~~i~~~~q~~~~~~~~~~~~ 74 (149)
++++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|+++ +.++|+||++. ++.
T Consensus 357 ~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~-----lf~- 430 (587)
T 3qf4_A 357 PVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETV-----LFS- 430 (587)
T ss_dssp CSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHEEEECSSCC-----CCS-
T ss_pred cceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhheEEECCCCc-----CcC-
Confidence 589999999999999999999999999999999999999999999999876 24999999853 332
Q ss_pred CChhHHHhhcccCchHHHHHHHhhhh---HHH-------HhhcC--CCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCC
Q psy10767 75 DSPSYLLEYYNCSTLEDVFLYLCEQD---QIL-------FSLVG--SESAFGGQQRRVSFAVSLIHDPKILILDEPTVGL 142 (149)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-------~~~~~--~~~~sgGqkqrv~iaral~~~p~illlDEPt~gL 142 (149)
.++.+|..+......++......+.. +.. ....+ ...+|||||||++||||++++|+++||||||++|
T Consensus 431 ~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p~illlDEpts~L 510 (587)
T 3qf4_A 431 GTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSV 510 (587)
T ss_dssp EEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTS
T ss_pred ccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccC
Confidence 36677765532222222222222111 111 11111 2357999999999999999999999999999999
Q ss_pred CcCCC
Q psy10767 143 DPVLS 147 (149)
Q Consensus 143 D~~~~ 147 (149)
|+..+
T Consensus 511 D~~~~ 515 (587)
T 3qf4_A 511 DPITE 515 (587)
T ss_dssp CHHHH
T ss_pred CHHHH
Confidence 98653
No 44
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=2.4e-34 Score=242.03 Aligned_cols=134 Identities=25% Similarity=0.295 Sum_probs=99.8
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeecceeeeeecCcccccCcccccCChhHHHhh
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAEDSPSYLLEY 83 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~ 83 (149)
+.++..||++.+||++||+||||||||||+|+|+|+++|++|+|.+++. .++|++|+... ....++.++...
T Consensus 282 ~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~---~i~~~~q~~~~-----~~~~tv~~~l~~ 353 (538)
T 3ozx_A 282 FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQ---ILSYKPQRIFP-----NYDGTVQQYLEN 353 (538)
T ss_dssp EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCC---CEEEECSSCCC-----CCSSBHHHHHHH
T ss_pred EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCe---eeEeechhccc-----ccCCCHHHHHHH
Confidence 4566778889999999999999999999999999999999999998874 58999997422 123344444433
Q ss_pred cccC---chHHHHHHHhhhhHH---HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCCC
Q psy10767 84 YNCS---TLEDVFLYLCEQDQI---LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 84 ~~~~---~~~~~~~~~~~~~~~---~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~~ 147 (149)
.... ........+++.+++ ..+.+. .|||||||||+|||||+.+|++|||||||+|||+..+
T Consensus 354 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~ 421 (538)
T 3ozx_A 354 ASKDALSTSSWFFEEVTKRLNLHRLLESNVN--DLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEER 421 (538)
T ss_dssp HCSSTTCTTSHHHHHTTTTTTGGGCTTSBGG--GCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHH
T ss_pred hhhhccchhHHHHHHHHHHcCCHHHhcCChh--hCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHH
Confidence 2111 112233344444443 223333 4599999999999999999999999999999998754
No 45
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=5.1e-34 Score=259.41 Aligned_cols=137 Identities=26% Similarity=0.326 Sum_probs=105.5
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec---------ceeeeeecCcccccCccccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV---------RDIGYMPQVGLMRSGALLAE 74 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~---------~~i~~~~q~~~~~~~~~~~~ 74 (149)
++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.++ ++|++|||++.++.+
T Consensus 1093 ~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~g----- 1167 (1321)
T 4f4c_A 1093 EILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDC----- 1167 (1321)
T ss_dssp CSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSE-----
T ss_pred ccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCc-----
Confidence 589999999999999999999999999999999999999999999999987 359999999655433
Q ss_pred CChhHHHhhcc--cCchHHHHHHHhhhhHH----------HHhhcCC--CCCChhHHHHHHHHHHHhcCCCEEEEcCCCC
Q psy10767 75 DSPSYLLEYYN--CSTLEDVFLYLCEQDQI----------LFSLVGS--ESAFGGQQRRVSFAVSLIHDPKILILDEPTV 140 (149)
Q Consensus 75 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~----------~~~~~~~--~~~sgGqkqrv~iaral~~~p~illlDEPt~ 140 (149)
++.+|..+.. ....++...++++..+. .+..++. ..+|||||||++|||||+++|+|||||||||
T Consensus 1168 -TIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~ILiLDEaTS 1246 (1321)
T 4f4c_A 1168 -SIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATS 1246 (1321)
T ss_dssp -EHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCC
T ss_pred -cHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCCCEEEEeCccc
Confidence 4555654321 11122333333332221 1222222 3479999999999999999999999999999
Q ss_pred CCCcCC
Q psy10767 141 GLDPVL 146 (149)
Q Consensus 141 gLD~~~ 146 (149)
+||+.+
T Consensus 1247 aLD~~t 1252 (1321)
T 4f4c_A 1247 ALDTES 1252 (1321)
T ss_dssp STTSHH
T ss_pred cCCHHH
Confidence 999864
No 46
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=5.1e-34 Score=258.84 Aligned_cols=137 Identities=28% Similarity=0.404 Sum_probs=104.5
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeecc---------eeeeeecCcccccCccccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVR---------DIGYMPQVGLMRSGALLAE 74 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~~---------~i~~~~q~~~~~~~~~~~~ 74 (149)
++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.+++ .|+|++|++. ++.
T Consensus 404 ~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~-----l~~- 477 (1284)
T 3g5u_A 404 QILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPV-----LFA- 477 (1284)
T ss_dssp CSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCC-----CCS-
T ss_pred cceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCc-----cCC-
Confidence 5899999999999999999999999999999999999999999999998863 4999999953 332
Q ss_pred CChhHHHhhcccCchHHHHHHHhhhh---HHH-------HhhcC--CCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCC
Q psy10767 75 DSPSYLLEYYNCSTLEDVFLYLCEQD---QIL-------FSLVG--SESAFGGQQRRVSFAVSLIHDPKILILDEPTVGL 142 (149)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-------~~~~~--~~~~sgGqkqrv~iaral~~~p~illlDEPt~gL 142 (149)
.++.+|..+.......+...+..+.. +.. ...++ ...||||||||++||||++++|+||||||||++|
T Consensus 478 ~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~L 557 (1284)
T 3g5u_A 478 TTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSAL 557 (1284)
T ss_dssp SCHHHHHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSS
T ss_pred ccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCC
Confidence 36777766542221122222222111 111 11111 1257999999999999999999999999999999
Q ss_pred CcCC
Q psy10767 143 DPVL 146 (149)
Q Consensus 143 D~~~ 146 (149)
|+..
T Consensus 558 D~~~ 561 (1284)
T 3g5u_A 558 DTES 561 (1284)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 9864
No 47
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=8.7e-34 Score=257.88 Aligned_cols=137 Identities=26% Similarity=0.416 Sum_probs=107.5
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeecc---------eeeeeecCcccccCccccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVR---------DIGYMPQVGLMRSGALLAE 74 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~~---------~i~~~~q~~~~~~~~~~~~ 74 (149)
++|+|+||++++|+.+||+||||||||||+++|.|+++|++|+|.++|.+++ .|+||+|++.++ .
T Consensus 432 ~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf------~ 505 (1321)
T 4f4c_A 432 PILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALF------N 505 (1321)
T ss_dssp CSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCC------S
T ss_pred ceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhcccccCCcceee------C
Confidence 6899999999999999999999999999999999999999999999999873 599999995433 3
Q ss_pred CChhHHHhhcccCchHHHHHHHhhhhH---HH-------HhhcCC--CCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCC
Q psy10767 75 DSPSYLLEYYNCSTLEDVFLYLCEQDQ---IL-------FSLVGS--ESAFGGQQRRVSFAVSLIHDPKILILDEPTVGL 142 (149)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-------~~~~~~--~~~sgGqkqrv~iaral~~~p~illlDEPt~gL 142 (149)
.++.+|..+......++...++++... .. ...++. ..||||||||++||||++++|+|||||||||+|
T Consensus 506 ~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaL 585 (1321)
T 4f4c_A 506 CTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSAL 585 (1321)
T ss_dssp EEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTS
T ss_pred CchhHHHhhhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccccC
Confidence 456677765432222333333333321 11 122222 357999999999999999999999999999999
Q ss_pred CcCC
Q psy10767 143 DPVL 146 (149)
Q Consensus 143 D~~~ 146 (149)
|+.+
T Consensus 586 D~~t 589 (1321)
T 4f4c_A 586 DAES 589 (1321)
T ss_dssp CTTT
T ss_pred CHHH
Confidence 9975
No 48
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=5.5e-34 Score=242.67 Aligned_cols=133 Identities=25% Similarity=0.256 Sum_probs=97.6
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeecceeeeeecCcccccCcccccCChhHHHhh
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAEDSPSYLLEY 83 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~ 83 (149)
+.++++||++.+||++||+||||||||||+|+|+|+++|++|+|.+. ..++|+||+.... ...++.++...
T Consensus 370 ~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~----~~i~~v~Q~~~~~-----~~~tv~e~~~~ 440 (607)
T 3bk7_A 370 FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD----LTVAYKPQYIKAE-----YEGTVYELLSK 440 (607)
T ss_dssp CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCC----CCEEEECSSCCCC-----CSSBHHHHHHH
T ss_pred eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEe----eEEEEEecCccCC-----CCCcHHHHHHh
Confidence 46778888899999999999999999999999999999999999873 3699999985322 23344333322
Q ss_pred c-c-cCchHHHHHHHhhhhHH---HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCCC
Q psy10767 84 Y-N-CSTLEDVFLYLCEQDQI---LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 84 ~-~-~~~~~~~~~~~~~~~~~---~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~~ 147 (149)
. . .....+.+..+++.+++ ..+.+. .|||||||||+|||||+.+|++|||||||+|||+..+
T Consensus 441 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~ 507 (607)
T 3bk7_A 441 IDSSKLNSNFYKTELLKPLGIIDLYDRNVE--DLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQR 507 (607)
T ss_dssp HHHHHHHCHHHHHHTHHHHTCTTTTTSBGG--GCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHH
T ss_pred hhccCCCHHHHHHHHHHHcCCchHhcCChh--hCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHH
Confidence 1 0 00012223333443333 222233 4599999999999999999999999999999998754
No 49
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=5.5e-34 Score=239.83 Aligned_cols=133 Identities=26% Similarity=0.258 Sum_probs=97.6
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeecceeeeeecCcccccCcccccCChhHHHhh
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAEDSPSYLLEY 83 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~ 83 (149)
+.++++||++.+||++||+||||||||||+|+|+|+++|++|+|.+. ..++|+||+.... ...++.++...
T Consensus 300 ~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~----~~i~~v~Q~~~~~-----~~~tv~~~~~~ 370 (538)
T 1yqt_A 300 FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWD----LTVAYKPQYIKAD-----YEGTVYELLSK 370 (538)
T ss_dssp EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCC----CCEEEECSSCCCC-----CSSBHHHHHHH
T ss_pred EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEC----ceEEEEecCCcCC-----CCCcHHHHHHh
Confidence 45677888899999999999999999999999999999999999873 3699999985322 22334333321
Q ss_pred c--ccCchHHHHHHHhhhhHH---HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCCC
Q psy10767 84 Y--NCSTLEDVFLYLCEQDQI---LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 84 ~--~~~~~~~~~~~~~~~~~~---~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~~ 147 (149)
. ......+.+..+++.+++ ..+.+. .|||||||||+|||||+.+|++|||||||+|||+..+
T Consensus 371 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~ 437 (538)
T 1yqt_A 371 IDASKLNSNFYKTELLKPLGIIDLYDREVN--ELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQR 437 (538)
T ss_dssp HHHHHHTCHHHHHHTTTTTTCGGGTTSBGG--GCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHH
T ss_pred hhccCCCHHHHHHHHHHHcCChhhhcCChh--hCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHH
Confidence 1 000112233344444433 122233 4599999999999999999999999999999998754
No 50
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=3.3e-33 Score=253.61 Aligned_cols=138 Identities=25% Similarity=0.377 Sum_probs=104.4
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec---------ceeeeeecCcccccCccccc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV---------RDIGYMPQVGLMRSGALLAE 74 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~---------~~i~~~~q~~~~~~~~~~~~ 74 (149)
++++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++ +.++|+||++.++ .
T Consensus 1047 ~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~------~ 1120 (1284)
T 3g5u_A 1047 PVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILF------D 1120 (1284)
T ss_dssp CSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCC------S
T ss_pred eeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhceEEECCCCccc------c
Confidence 589999999999999999999999999999999999999999999999876 3599999995332 3
Q ss_pred CChhHHHhhcccC--chHHHHHHHhhhhHH----------HHhhcCC--CCCChhHHHHHHHHHHHhcCCCEEEEcCCCC
Q psy10767 75 DSPSYLLEYYNCS--TLEDVFLYLCEQDQI----------LFSLVGS--ESAFGGQQRRVSFAVSLIHDPKILILDEPTV 140 (149)
Q Consensus 75 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~----------~~~~~~~--~~~sgGqkqrv~iaral~~~p~illlDEPt~ 140 (149)
.++.+|..+.... ...+......+.... .+..++. ..||||||||++|||||+++|+||||||||+
T Consensus 1121 ~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs 1200 (1284)
T 3g5u_A 1121 CSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATS 1200 (1284)
T ss_dssp SBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSS
T ss_pred ccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 4667776543211 112222222222111 1111221 3579999999999999999999999999999
Q ss_pred CCCcCCC
Q psy10767 141 GLDPVLS 147 (149)
Q Consensus 141 gLD~~~~ 147 (149)
+||+..+
T Consensus 1201 ~lD~~~~ 1207 (1284)
T 3g5u_A 1201 ALDTESE 1207 (1284)
T ss_dssp SCCHHHH
T ss_pred cCCHHHH
Confidence 9998643
No 51
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.98 E-value=3.5e-33 Score=234.97 Aligned_cols=136 Identities=19% Similarity=0.220 Sum_probs=93.8
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceE---------EECCeec-----------ceeeeeecC
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSI---------SLSARTV-----------RDIGYMPQV 63 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i---------~~~g~~~-----------~~i~~~~q~ 63 (149)
++++++| ++.+||++||+||||||||||+|+|+|+++|++|++ .++|.++ ..+++++|.
T Consensus 36 ~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~q~ 114 (538)
T 1yqt_A 36 FVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQY 114 (538)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHHHHHTTSCCCEEECSC
T ss_pred ccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHHHHHHHhhhhhhhhhh
Confidence 4789999 999999999999999999999999999999999995 3455432 136677775
Q ss_pred cccccCcccccCChhHHHhhcccCchHHHHHHHhhhhHH---HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCC
Q psy10767 64 GLMRSGALLAEDSPSYLLEYYNCSTLEDVFLYLCEQDQI---LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTV 140 (149)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~ 140 (149)
...... .. ..++.++....... ..+.++++.+++ ..+.+. .|||||||||+|||||+.+|++|||||||+
T Consensus 115 ~~~~~~-~~-~~~v~e~~~~~~~~---~~~~~~l~~lgl~~~~~~~~~--~LSgGekQRv~iAraL~~~P~lLlLDEPTs 187 (538)
T 1yqt_A 115 VDLIPK-AV-KGKVIELLKKADET---GKLEEVVKALELENVLEREIQ--HLSGGELQRVAIAAALLRNATFYFFDEPSS 187 (538)
T ss_dssp GGGSGG-GC-CSBHHHHHHHHCSS---SCHHHHHHHTTCTTTTTSBGG--GCCHHHHHHHHHHHHHHSCCSEEEEESTTT
T ss_pred hhhcch-hh-hccHHHHHhhhhHH---HHHHHHHHHcCCChhhhCChh--hCCHHHHHHHHHHHHHhcCCCEEEEECCcc
Confidence 321111 11 11333332211111 112223333332 223333 459999999999999999999999999999
Q ss_pred CCCcCCC
Q psy10767 141 GLDPVLS 147 (149)
Q Consensus 141 gLD~~~~ 147 (149)
+||+..+
T Consensus 188 ~LD~~~~ 194 (538)
T 1yqt_A 188 YLDIRQR 194 (538)
T ss_dssp TCCHHHH
T ss_pred cCCHHHH
Confidence 9998753
No 52
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.97 E-value=6.5e-33 Score=236.06 Aligned_cols=136 Identities=20% Similarity=0.233 Sum_probs=94.9
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceE---------EECCeec-----------ceeeeeecC
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSI---------SLSARTV-----------RDIGYMPQV 63 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i---------~~~g~~~-----------~~i~~~~q~ 63 (149)
++++++| ++.+||++||+||||||||||+|+|+|+++|++|++ .++|.++ ..+++++|.
T Consensus 106 ~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~q~ 184 (607)
T 3bk7_A 106 FVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQY 184 (607)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECSC
T ss_pred eeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehhhhhhhhhhhhcceEEeech
Confidence 4789999 999999999999999999999999999999999996 3455432 136677775
Q ss_pred cccccCcccccCChhHHHhhcccCchHHHHHHHhhhhHH---HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCC
Q psy10767 64 GLMRSGALLAEDSPSYLLEYYNCSTLEDVFLYLCEQDQI---LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTV 140 (149)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~ 140 (149)
...... .. ..++.++....... +.+.++++.+++ ..+... .|||||||||+|||||+.+|++|||||||+
T Consensus 185 ~~~~~~-~~-~~tv~e~l~~~~~~---~~~~~~L~~lgL~~~~~~~~~--~LSGGekQRvaIAraL~~~P~lLlLDEPTs 257 (607)
T 3bk7_A 185 VDLLPK-AV-KGKVRELLKKVDEV---GKFEEVVKELELENVLDRELH--QLSGGELQRVAIAAALLRKAHFYFFDEPSS 257 (607)
T ss_dssp GGGGGG-TC-CSBHHHHHHHTCCS---SCHHHHHHHTTCTTGGGSBGG--GCCHHHHHHHHHHHHHHSCCSEEEEECTTT
T ss_pred hhhchh-hc-cccHHHHhhhhHHH---HHHHHHHHHcCCCchhCCChh--hCCHHHHHHHHHHHHHhcCCCEEEEECCcc
Confidence 322111 11 11344443321111 112223333332 333344 359999999999999999999999999999
Q ss_pred CCCcCCC
Q psy10767 141 GLDPVLS 147 (149)
Q Consensus 141 gLD~~~~ 147 (149)
+||+..+
T Consensus 258 ~LD~~~~ 264 (607)
T 3bk7_A 258 YLDIRQR 264 (607)
T ss_dssp TCCHHHH
T ss_pred cCCHHHH
Confidence 9998754
No 53
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.97 E-value=9.8e-32 Score=228.78 Aligned_cols=132 Identities=20% Similarity=0.199 Sum_probs=93.7
Q ss_pred ceecceEEEeCC-----cEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeecceeeeeecCcccccCcccccCChhH
Q psy10767 5 SASSLNTVIFGV-----TAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAEDSPSY 79 (149)
Q Consensus 5 ~~~~i~~~~~~g-----~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~~~i~~~~q~~~~~~~~~~~~~~~~~ 79 (149)
.++++||++.+| |++||+||||||||||+|+|+|+++|++|+.. . -..++|++|+.... ...++.+
T Consensus 362 ~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~-~---~~~i~~~~q~~~~~-----~~~tv~e 432 (608)
T 3j16_B 362 TQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDI-P---KLNVSMKPQKIAPK-----FPGTVRQ 432 (608)
T ss_dssp ECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCCC-C---SCCEEEECSSCCCC-----CCSBHHH
T ss_pred ccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcCc-c---CCcEEEeccccccc-----CCccHHH
Confidence 577999999988 78999999999999999999999999999742 1 13689999974221 1223333
Q ss_pred HHhhc--ccCchHHHHHHHhhhhHH---HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCCC
Q psy10767 80 LLEYY--NCSTLEDVFLYLCEQDQI---LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 80 ~~~~~--~~~~~~~~~~~~~~~~~~---~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~~ 147 (149)
+.... ...........+++.+++ ..+.+ ..|||||||||+|||||+.+|++|||||||+|||+..+
T Consensus 433 ~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~--~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~ 503 (608)
T 3j16_B 433 LFFKKIRGQFLNPQFQTDVVKPLRIDDIIDQEV--QHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQR 503 (608)
T ss_dssp HHHHHCSSTTTSHHHHHHTHHHHTSTTTSSSBS--SSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHH
T ss_pred HHHHHhhcccccHHHHHHHHHHcCChhhhcCCh--hhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHH
Confidence 32211 111112223333333333 22223 34699999999999999999999999999999998654
No 54
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.97 E-value=2.3e-31 Score=235.16 Aligned_cols=59 Identities=22% Similarity=0.367 Sum_probs=54.2
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeecceeeeeecCc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVG 64 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~~~i~~~~q~~ 64 (149)
++++|+||++.+||++||+||||||||||+|+|+|+++|++|+|++++. ..++|++|+.
T Consensus 687 ~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~~--~~I~yv~Q~~ 745 (986)
T 2iw3_A 687 PQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHEN--CRIAYIKQHA 745 (986)
T ss_dssp CSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECTT--CCEEEECHHH
T ss_pred eeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcCc--cceEeeccch
Confidence 5799999999999999999999999999999999999999999999874 2588988864
No 55
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.97 E-value=3.3e-31 Score=222.91 Aligned_cols=130 Identities=21% Similarity=0.237 Sum_probs=81.6
Q ss_pred eCCcEEEEECCCCCCHHHHHHHHhcCccCCcceE-----------EECCeecc-----------eeeeeecCcccccCcc
Q psy10767 14 FGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSI-----------SLSARTVR-----------DIGYMPQVGLMRSGAL 71 (149)
Q Consensus 14 ~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i-----------~~~g~~~~-----------~i~~~~q~~~~~~~~~ 71 (149)
++||++||+||||||||||+|+|+|+++|++|+| .++|.++. .+....|..... ...
T Consensus 23 ~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 101 (538)
T 3ozx_A 23 KNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYA-SKF 101 (538)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGG-GTT
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhh-hhh
Confidence 6999999999999999999999999999999998 55665431 122222221100 000
Q ss_pred cccCChhHHHhhcccCchHHHHHHHhhhhHHHHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCCC
Q psy10767 72 LAEDSPSYLLEYYNCSTLEDVFLYLCEQDQILFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~~ 147 (149)
...++.+...........+.....+.......+.+. .|||||||||+|||||+.+|++|||||||++||+..+
T Consensus 102 -~~~~v~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~--~LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~~~~ 174 (538)
T 3ozx_A 102 -LKGTVNEILTKIDERGKKDEVKELLNMTNLWNKDAN--ILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRER 174 (538)
T ss_dssp -CCSBHHHHHHHHCCSSCHHHHHHHTTCGGGTTSBGG--GCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHH
T ss_pred -ccCcHHHHhhcchhHHHHHHHHHHcCCchhhcCChh--hCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHH
Confidence 011222222111111111111122222222333344 3599999999999999999999999999999998653
No 56
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.96 E-value=1.1e-30 Score=224.21 Aligned_cols=142 Identities=19% Similarity=0.248 Sum_probs=78.9
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHH---------------------HHHhcCccCCc-------ceEEECCeec-
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLL---------------------SCIVNRLRLDH-------GSISLSARTV- 54 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl---------------------~~i~g~~~~~~-------G~i~~~g~~~- 54 (149)
.+|+||||+|++||++||+||||||||||+ +++.|+..|+. |.|.+++.+.
T Consensus 32 ~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~~ 111 (670)
T 3ux8_A 32 HNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTTS 111 (670)
T ss_dssp TTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC--
T ss_pred cceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchhh
Confidence 479999999999999999999999999998 89999999984 4555555432
Q ss_pred ----ceeeeeecCcccccCc--------------ccccCChhHHHhhcc-c--Cch-----HHHHHHH------hhhhHH
Q psy10767 55 ----RDIGYMPQVGLMRSGA--------------LLAEDSPSYLLEYYN-C--STL-----EDVFLYL------CEQDQI 102 (149)
Q Consensus 55 ----~~i~~~~q~~~~~~~~--------------~~~~~~~~~~~~~~~-~--~~~-----~~~~~~~------~~~~~~ 102 (149)
..+++++|........ .+...++.++..+.. . ... ....... ++.+++
T Consensus 112 ~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gL 191 (670)
T 3ux8_A 112 RNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQNVGL 191 (670)
T ss_dssp ---CCBHHHHTTCC-------------------------CC--------------------------CHHHHHHHHHTTC
T ss_pred ccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHHHHcCC
Confidence 3466777653211000 011122333322210 0 000 0000111 111111
Q ss_pred ----HHhhcCCCCCChhHHHHHHHHHHHhcCCC--EEEEcCCCCCCCcCCC
Q psy10767 103 ----LFSLVGSESAFGGQQRRVSFAVSLIHDPK--ILILDEPTVGLDPVLS 147 (149)
Q Consensus 103 ----~~~~~~~~~~sgGqkqrv~iaral~~~p~--illlDEPt~gLD~~~~ 147 (149)
..+... .|||||||||+|||||+.+|+ +|||||||+|||+..+
T Consensus 192 ~~~~~~~~~~--~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~ 240 (670)
T 3ux8_A 192 DYLTLSRSAG--TLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDN 240 (670)
T ss_dssp TTCCTTCBGG--GSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGH
T ss_pred chhhhcCCcc--cCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHH
Confidence 112222 459999999999999999998 9999999999999764
No 57
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.96 E-value=9.8e-31 Score=222.64 Aligned_cols=140 Identities=21% Similarity=0.251 Sum_probs=85.7
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEE-----------ECCeecc---------eee--eee
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSIS-----------LSARTVR---------DIG--YMP 61 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~-----------~~g~~~~---------~i~--~~~ 61 (149)
+.+++++ ++.+||++||+||||||||||+|+|+|+++|++|+|. +.|..+. .+. +.+
T Consensus 92 ~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 170 (608)
T 3j16_B 92 FKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKP 170 (608)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEEC
T ss_pred eeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhHHHHHhhhhhhch
Confidence 3455555 5789999999999999999999999999999999983 3332211 011 111
Q ss_pred cCcccccCcccc-cCChhHHHhhcccCchHHHHHHHhhhhHH---HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcC
Q psy10767 62 QVGLMRSGALLA-EDSPSYLLEYYNCSTLEDVFLYLCEQDQI---LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDE 137 (149)
Q Consensus 62 q~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDE 137 (149)
|........... ..++.+...... ....+.+.++++.+++ ..+.+ ..|||||||||+|||||+.+|++|||||
T Consensus 171 ~~~~~~~~~~~~~~~~v~~~l~~~~-~~~~~~~~~~l~~~gl~~~~~~~~--~~LSgGe~Qrv~iAraL~~~p~llllDE 247 (608)
T 3j16_B 171 QYVDNIPRAIKGPVQKVGELLKLRM-EKSPEDVKRYIKILQLENVLKRDI--EKLSGGELQRFAIGMSCVQEADVYMFDE 247 (608)
T ss_dssp CCTTTHHHHCSSSSSHHHHHHHHHC-CSCHHHHHHHHHHHTCTGGGGSCT--TTCCHHHHHHHHHHHHHHSCCSEEEEEC
T ss_pred hhhhhhhhhhcchhhHHHHHHhhhh-hhHHHHHHHHHHHcCCcchhCCCh--HHCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 110000000000 001111111111 1112334444444443 23333 3459999999999999999999999999
Q ss_pred CCCCCCcCCC
Q psy10767 138 PTVGLDPVLS 147 (149)
Q Consensus 138 Pt~gLD~~~~ 147 (149)
||++||+..+
T Consensus 248 Pts~LD~~~~ 257 (608)
T 3j16_B 248 PSSYLDVKQR 257 (608)
T ss_dssp TTTTCCHHHH
T ss_pred cccCCCHHHH
Confidence 9999998754
No 58
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.96 E-value=1.9e-29 Score=222.98 Aligned_cols=129 Identities=22% Similarity=0.315 Sum_probs=89.9
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec---ceeeeeecCcccccCcccccCChhHH
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV---RDIGYMPQVGLMRSGALLAEDSPSYL 80 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~---~~i~~~~q~~~~~~~~~~~~~~~~~~ 80 (149)
.+++|+||++.+|++++|+||||||||||+|+|+| |+| +|.+. ..++|++|+.. ......++.++
T Consensus 449 ~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag------G~i--~g~~~~~~~~~~~v~q~~~----~~~~~ltv~e~ 516 (986)
T 2iw3_A 449 ILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN------GQV--DGFPTQEECRTVYVEHDID----GTHSDTSVLDF 516 (986)
T ss_dssp EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH------TCS--TTCCCTTTSCEEETTCCCC----CCCTTSBHHHH
T ss_pred EeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC------CCc--CCCccccceeEEEEccccc----ccccCCcHHHH
Confidence 47999999999999999999999999999999995 332 22221 23678887521 12233445554
Q ss_pred HhhcccCchHHHHHHHhhhhHH----HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCCC
Q psy10767 81 LEYYNCSTLEDVFLYLCEQDQI----LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~~ 147 (149)
........ .+.+...++.+++ ..+... .||||||||++|||||+.+|++|||||||++||+..+
T Consensus 517 l~~~~~~~-~~~v~~~L~~lgL~~~~~~~~~~--~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~ 584 (986)
T 2iw3_A 517 VFESGVGT-KEAIKDKLIEFGFTDEMIAMPIS--ALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNV 584 (986)
T ss_dssp HHTTCSSC-HHHHHHHHHHTTCCHHHHHSBGG--GCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHH
T ss_pred HHHhhcCH-HHHHHHHHHHcCCChhhhcCCcc--cCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHH
Confidence 43210011 3334444444433 233344 4599999999999999999999999999999998754
No 59
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.95 E-value=2.5e-28 Score=209.63 Aligned_cols=37 Identities=38% Similarity=0.531 Sum_probs=33.4
Q ss_pred CCChhHHHHHHHHHHHhcCC---CEEEEcCCCCCCCcCCC
Q psy10767 111 SAFGGQQRRVSFAVSLIHDP---KILILDEPTVGLDPVLS 147 (149)
Q Consensus 111 ~~sgGqkqrv~iaral~~~p---~illlDEPt~gLD~~~~ 147 (149)
.|||||||||+|||||+.+| ++|||||||+|||+..+
T Consensus 543 ~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~ 582 (670)
T 3ux8_A 543 TLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDI 582 (670)
T ss_dssp GCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHH
T ss_pred hCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHH
Confidence 46999999999999999887 49999999999998754
No 60
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.94 E-value=3.7e-30 Score=213.02 Aligned_cols=136 Identities=14% Similarity=0.045 Sum_probs=93.2
Q ss_pred eecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcc-e-EEECCeecceeeeeecCcccccCcccccCChhHHHhh
Q psy10767 6 ASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHG-S-ISLSARTVRDIGYMPQVGLMRSGALLAEDSPSYLLEY 83 (149)
Q Consensus 6 ~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G-~-i~~~g~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~ 83 (149)
..++||++++|++++|+||||||||||+|+|+|+++|++| + |++++...+.++++||+..++.. ....++.++. +
T Consensus 128 y~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~~~~~i~~vpq~~~l~~~--~~~~tv~eni-~ 204 (460)
T 2npi_A 128 LEKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLDPQQPIFTVPGCISATPI--SDILDAQLPT-W 204 (460)
T ss_dssp HHHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECCTTSCSSSCSSCCEEEEC--CSCCCTTCTT-C
T ss_pred hhcCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCCccCCeeeeccchhhccc--ccccchhhhh-c
Confidence 3478899999999999999999999999999999999999 9 99998544579999997532111 0111222111 1
Q ss_pred ccc----CchHHHHHHHhhhhHHHHhhcCCCCCChhHHHHHHHHHH--HhcCCCE----EEEcC-CCCCCCcC
Q psy10767 84 YNC----STLEDVFLYLCEQDQILFSLVGSESAFGGQQRRVSFAVS--LIHDPKI----LILDE-PTVGLDPV 145 (149)
Q Consensus 84 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~sgGqkqrv~iara--l~~~p~i----lllDE-Pt~gLD~~ 145 (149)
... ....+....+++.+++... .....+|||||||++|||| |+.+|++ ||||| ||++||+.
T Consensus 205 ~~~~~~~~~~~~~~~~ll~~~gl~~~-~~~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~ 276 (460)
T 2npi_A 205 GQSLTSGATLLHNKQPMVKNFGLERI-NENKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN 276 (460)
T ss_dssp SCBCBSSCCSSCCBCCEECCCCSSSG-GGCHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS
T ss_pred ccccccCcchHHHHHHHHHHhCCCcc-cchhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh
Confidence 000 0000111111222221100 0123459999999999999 9999999 99999 99999986
No 61
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.94 E-value=3e-27 Score=191.68 Aligned_cols=60 Identities=20% Similarity=0.223 Sum_probs=50.8
Q ss_pred ceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCcc--------------------------------------CCcce
Q psy10767 5 SASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLR--------------------------------------LDHGS 46 (149)
Q Consensus 5 ~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~--------------------------------------~~~G~ 46 (149)
.+++++|++.+| +++|+||||||||||+++|+++.. +.+|+
T Consensus 50 ~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~~ 128 (415)
T 4aby_A 50 TITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRGA 128 (415)
T ss_dssp TEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCEE
T ss_pred ceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCceE
Confidence 578999999999 999999999999999999976653 44788
Q ss_pred EEECCeecce----------eeeeecCcc
Q psy10767 47 ISLSARTVRD----------IGYMPQVGL 65 (149)
Q Consensus 47 i~~~g~~~~~----------i~~~~q~~~ 65 (149)
++++|.++.. +.+++|+..
T Consensus 129 i~ing~~~~~~~~~~~~~~~i~~~~q~~~ 157 (415)
T 4aby_A 129 ARLSGEVVSVRELQEWAQGRLTIHWQHSA 157 (415)
T ss_dssp EEETTEEECHHHHHHHHTTTEEEETTTCT
T ss_pred EEECCEECCHHHHHHHHhhceEEecCccc
Confidence 9999987632 788898743
No 62
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.93 E-value=1.1e-28 Score=185.14 Aligned_cols=114 Identities=17% Similarity=0.117 Sum_probs=72.9
Q ss_pred ceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCe-----ec-ceeeeeecCcccccCcccccCChh
Q psy10767 5 SASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSAR-----TV-RDIGYMPQVGLMRSGALLAEDSPS 78 (149)
Q Consensus 5 ~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~-----~~-~~i~~~~q~~~~~~~~~~~~~~~~ 78 (149)
+++++ ++||+++|+||||||||||+++|+|+ +|++|+|..... .. +.++|+||++. ..+.... ..
T Consensus 15 ~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~~~~~~~~~~~~~~ig~v~q~~~---enl~~~~-~~ 85 (208)
T 3b85_A 15 YVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSRIILTRPAVEAGEKLGFLPGTLN---EKIDPYL-RP 85 (208)
T ss_dssp HHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSEEEEEECSCCTTCCCCSSCC---------CTTT-HH
T ss_pred HHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeeeEEecCCchhhhcceEEecCCHH---HHHHHHH-HH
Confidence 45664 89999999999999999999999999 999999953110 11 35889999740 0010000 00
Q ss_pred HHHhhcccCchHHHHHHHhhhhHHHHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCC
Q psy10767 79 YLLEYYNCSTLEDVFLYLCEQDQILFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVG 141 (149)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~g 141 (149)
.......... ...+..+ +.. . .|||||++|||||+.+|++|||||||++
T Consensus 86 ~~~~~~~~~~-~~~~~~~------l~~-----g--lGq~qrv~lAraL~~~p~lllLDEPts~ 134 (208)
T 3b85_A 86 LHDALRDMVE-PEVIPKL------MEA-----G--IVEVAPLAYMRGRTLNDAFVILDEAQNT 134 (208)
T ss_dssp HHHHHTTTSC-TTHHHHH------HHT-----T--SEEEEEGGGGTTCCBCSEEEEECSGGGC
T ss_pred HHHHHHHhcc-HHHHHHH------HHh-----C--CchHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 0000111000 1111111 111 1 2999999999999999999999999998
No 63
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.93 E-value=2e-28 Score=200.27 Aligned_cols=133 Identities=9% Similarity=-0.010 Sum_probs=92.6
Q ss_pred cceecceEEEeCCc--------------------EEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeecceeeeeecC
Q psy10767 4 VSASSLNTVIFGVT--------------------AYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQV 63 (149)
Q Consensus 4 ~~~~~i~~~~~~g~--------------------~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~~~i~~~~q~ 63 (149)
.+++++||++++|+ ++||+||||||||||+|+|+|+.+|++|+|.++|.+....++++|.
T Consensus 37 ~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~ 116 (413)
T 1tq4_A 37 EILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKH 116 (413)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEEC
T ss_pred HHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccc
Confidence 47899999999999 9999999999999999999999999999999998765444788887
Q ss_pred cccccCcccccCChhHHHhhcccCchHHHHHHHhhhhHHHH-hhcCCCCCChh--HHHHHHHHHHHhc----------CC
Q psy10767 64 GLMRSGALLAEDSPSYLLEYYNCSTLEDVFLYLCEQDQILF-SLVGSESAFGG--QQRRVSFAVSLIH----------DP 130 (149)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~sgG--qkqrv~iaral~~----------~p 130 (149)
+.+ +.+...++.... ....... .+++..++.. ..... +|+| ||||++||++++. +|
T Consensus 117 ~~~--~~ltv~D~~g~~---~~~~~~~----~~L~~~~L~~~~~~~~--lS~G~~~kqrv~la~aL~~~~~p~~lV~tkp 185 (413)
T 1tq4_A 117 PNI--PNVVFWDLPGIG---STNFPPD----TYLEKMKFYEYDFFII--ISATRFKKNDIDIAKAISMMKKEFYFVRTKV 185 (413)
T ss_dssp SSC--TTEEEEECCCGG---GSSCCHH----HHHHHTTGGGCSEEEE--EESSCCCHHHHHHHHHHHHTTCEEEEEECCH
T ss_pred ccc--CCeeehHhhccc---chHHHHH----HHHHHcCCCccCCeEE--eCCCCccHHHHHHHHHHHhcCCCeEEEEecC
Confidence 421 111111111110 0111112 2222222211 11111 4888 9999999999999 99
Q ss_pred CEEEEcCCCCCCCcCCC
Q psy10767 131 KILILDEPTVGLDPVLS 147 (149)
Q Consensus 131 ~illlDEPt~gLD~~~~ 147 (149)
++++|||||+|||+..+
T Consensus 186 dlllLDEPtsgLD~~~~ 202 (413)
T 1tq4_A 186 DSDITNEADGEPQTFDK 202 (413)
T ss_dssp HHHHHHHHTTCCTTCCH
T ss_pred cccccCcccccCCHHHH
Confidence 99999999999999865
No 64
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.92 E-value=8.2e-28 Score=174.61 Aligned_cols=115 Identities=14% Similarity=0.076 Sum_probs=70.2
Q ss_pred cceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeecceeeeeecCcccccCcccccCChhHHHhhcccC
Q psy10767 8 SLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAEDSPSYLLEYYNCS 87 (149)
Q Consensus 8 ~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (149)
|+||++++||+++|+||||||||||+|++.+-. ..++... -.++++|++. ..........
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~------~~~~~d~--~~g~~~~~~~----~~~~~~~~~~-------- 60 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPT------EVISSDF--CRGLMSDDEN----DQTVTGAAFD-------- 60 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGG------GEEEHHH--HHHHHCSSTT----CGGGHHHHHH--------
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccCC------eEEccHH--HHHHhcCccc----chhhHHHHHH--------
Confidence 689999999999999999999999999865322 1122111 1255566421 0000000000
Q ss_pred chHHHHHHHhhhhHH--HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcC
Q psy10767 88 TLEDVFLYLCEQDQI--LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPV 145 (149)
Q Consensus 88 ~~~~~~~~~~~~~~~--~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~ 145 (149)
............ +. ...... ..|+|||||++||||++.+|++++|||||++||+.
T Consensus 61 ~~~~~~~~~~~~-g~~~~~~~~~--~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~ 117 (171)
T 4gp7_A 61 VLHYIVSKRLQL-GKLTVVDATN--VQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQER 117 (171)
T ss_dssp HHHHHHHHHHHT-TCCEEEESCC--CSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHH
T ss_pred HHHHHHHHHHhC-CCeEEEECCC--CCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHH
Confidence 000001000000 00 011112 23899999999999999999999999999999986
No 65
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.91 E-value=2.2e-24 Score=190.04 Aligned_cols=38 Identities=37% Similarity=0.521 Sum_probs=33.8
Q ss_pred CCCChhHHHHHHHHHHHhcCC---CEEEEcCCCCCCCcCCC
Q psy10767 110 ESAFGGQQRRVSFAVSLIHDP---KILILDEPTVGLDPVLS 147 (149)
Q Consensus 110 ~~~sgGqkqrv~iaral~~~p---~illlDEPt~gLD~~~~ 147 (149)
..|||||||||+|||||+++| +||||||||+|||+..+
T Consensus 804 ~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~ 844 (916)
T 3pih_A 804 TTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDV 844 (916)
T ss_dssp TTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHH
T ss_pred cCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHH
Confidence 356999999999999999876 79999999999998653
No 66
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.91 E-value=4e-25 Score=194.68 Aligned_cols=37 Identities=38% Similarity=0.531 Sum_probs=33.6
Q ss_pred CCChhHHHHHHHHHHHhcCC---CEEEEcCCCCCCCcCCC
Q psy10767 111 SAFGGQQRRVSFAVSLIHDP---KILILDEPTVGLDPVLS 147 (149)
Q Consensus 111 ~~sgGqkqrv~iaral~~~p---~illlDEPt~gLD~~~~ 147 (149)
.|||||||||+|||+|+.+| ++|||||||+|||+..+
T Consensus 845 ~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~ 884 (972)
T 2r6f_A 845 TLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDI 884 (972)
T ss_dssp GCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHH
T ss_pred hCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHH
Confidence 46999999999999999875 99999999999998654
No 67
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.91 E-value=6.3e-25 Score=192.20 Aligned_cols=38 Identities=34% Similarity=0.600 Sum_probs=34.2
Q ss_pred CCCChhHHHHHHHHHHHhcC---CCEEEEcCCCCCCCcCCC
Q psy10767 110 ESAFGGQQRRVSFAVSLIHD---PKILILDEPTVGLDPVLS 147 (149)
Q Consensus 110 ~~~sgGqkqrv~iaral~~~---p~illlDEPt~gLD~~~~ 147 (149)
..|||||||||+|||+|+.+ |++|||||||+|||+..+
T Consensus 729 ~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~ 769 (842)
T 2vf7_A 729 TELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADV 769 (842)
T ss_dssp GGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHH
T ss_pred ccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHH
Confidence 35699999999999999996 799999999999998653
No 68
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.90 E-value=3.1e-24 Score=189.53 Aligned_cols=38 Identities=37% Similarity=0.491 Sum_probs=33.9
Q ss_pred CCCChhHHHHHHHHHHHhcCC---CEEEEcCCCCCCCcCCC
Q psy10767 110 ESAFGGQQRRVSFAVSLIHDP---KILILDEPTVGLDPVLS 147 (149)
Q Consensus 110 ~~~sgGqkqrv~iaral~~~p---~illlDEPt~gLD~~~~ 147 (149)
..|||||||||+|||+|+.+| ++|||||||+|||+..+
T Consensus 862 ~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~ 902 (993)
T 2ygr_A 862 PTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDI 902 (993)
T ss_dssp GGSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHH
T ss_pred ccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHH
Confidence 356999999999999999875 99999999999998653
No 69
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.90 E-value=1.5e-27 Score=179.62 Aligned_cols=131 Identities=18% Similarity=0.164 Sum_probs=79.6
Q ss_pred ceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec----------ceeeeeecCcccccCcc---
Q psy10767 5 SASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV----------RDIGYMPQVGLMRSGAL--- 71 (149)
Q Consensus 5 ~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~----------~~i~~~~q~~~~~~~~~--- 71 (149)
.|+|+||++++|++++|+||||||||||+++|+|++ | |+|.+ |.+. +.++|+||++..+....
T Consensus 12 ~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 87 (218)
T 1z6g_A 12 SGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKNE 87 (218)
T ss_dssp ----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHHTT
T ss_pred cccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhhcc
Confidence 689999999999999999999999999999999998 6 99998 6432 35788888754322111
Q ss_pred --cccCChhHHHhhcccCchHHHHHHHhhhhHHHHhhcCCCCCChhHHHHHHH-----HHHHhcCCCEEEEcCCCCCCCc
Q psy10767 72 --LAEDSPSYLLEYYNCSTLEDVFLYLCEQDQILFSLVGSESAFGGQQRRVSF-----AVSLIHDPKILILDEPTVGLDP 144 (149)
Q Consensus 72 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgGqkqrv~i-----aral~~~p~illlDEPt~gLD~ 144 (149)
....+...+ .++.. .....++++..... .....+||||+||++| +|+++.+|++++|||||+++|.
T Consensus 88 ~~l~~~~~~~~--~~g~~--~~~i~~~l~~~~~~---il~~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~ 160 (218)
T 1z6g_A 88 DFLEYDNYANN--FYGTL--KSEYDKAKEQNKIC---LFEMNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNT 160 (218)
T ss_dssp CEEEEEEETTE--EEEEE--HHHHHHHHHTTCEE---EEEECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCC
T ss_pred chhhhhhcccc--cCCCc--HHHHHHHHhCCCcE---EEEecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCC
Confidence 000000000 11111 11122222211110 1113458999999999 8999999999999999999998
Q ss_pred CC
Q psy10767 145 VL 146 (149)
Q Consensus 145 ~~ 146 (149)
..
T Consensus 161 ~~ 162 (218)
T 1z6g_A 161 EN 162 (218)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 70
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.89 E-value=3.3e-26 Score=177.73 Aligned_cols=119 Identities=16% Similarity=0.145 Sum_probs=65.9
Q ss_pred EEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec------ceeeeeecCcccccCcccccCChhHHHhhcccCchHHH
Q psy10767 19 YGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV------RDIGYMPQVGLMRSGALLAEDSPSYLLEYYNCSTLEDV 92 (149)
Q Consensus 19 ~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~------~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (149)
++|+||||||||||+|+|+|+..|++|+|.++|.++ +.+++++|+..+...... .+++.......... ..+.
T Consensus 5 v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv-~d~~~~g~~~~~~~-~~~~ 82 (270)
T 3sop_A 5 IMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTV-IDTPGFGDQINNEN-CWEP 82 (270)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEE-ECCCC--CCSBCTT-CSHH
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceE-EechhhhhhcccHH-HHHH
Confidence 799999999999999999999999999999998754 458999998543322111 22221111111111 1111
Q ss_pred HHHHhhhhHHHHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcC
Q psy10767 93 FLYLCEQDQILFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPV 145 (149)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~ 145 (149)
...... ..........+ |+|||||+++|||+++ ++++|||+.+||+.
T Consensus 83 i~~~~~-~~~~~~~~~~L--S~G~~qrv~iaRal~~---lllldep~~gL~~l 129 (270)
T 3sop_A 83 IEKYIN-EQYEKFLKEEV--NIARKKRIPDTRVHCC---LYFISPTGHSLRPL 129 (270)
T ss_dssp HHHHHH-HHHHHHHHHHS--CTTCCSSCCCCSCCEE---EEEECCCSSSCCHH
T ss_pred HHHHHH-HHHHhhhHHhc--Ccccchhhhhheeeee---eEEEecCCCcCCHH
Confidence 111111 11122233334 8999999999999886 99999999999974
No 71
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.89 E-value=6.6e-26 Score=179.35 Aligned_cols=116 Identities=12% Similarity=0.044 Sum_probs=81.0
Q ss_pred EeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeecceeeeeecCcccccCcccccCChhHHHhhc---ccC--
Q psy10767 13 IFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAEDSPSYLLEYY---NCS-- 87 (149)
Q Consensus 13 ~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~---~~~-- 87 (149)
+++|+++||+||||||||||+++|+|+++|+.|. ..+++++|+..+.. . +..++..+. +..
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~--------~~v~~v~qd~~~~~-----~-t~~e~~~~~~~~g~~~~ 152 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLARWDHH--------PRVDLVTTDGFLYP-----N-AELQRRNLMHRKGFPES 152 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTC--------CCEEEEEGGGGBCC-----H-HHHHHTTCTTCTTSGGG
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccccCCC--------CeEEEEecCccCCc-----c-cHHHHHHHHHhcCCChH
Confidence 8999999999999999999999999999998664 46899999854332 2 222222211 111
Q ss_pred chHHHHHHHhhhhHH--HHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCc
Q psy10767 88 TLEDVFLYLCEQDQI--LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDP 144 (149)
Q Consensus 88 ~~~~~~~~~~~~~~~--~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~ 144 (149)
.....+...++.+.. ...... .+|+||+||+++||+++.+|+|||+|||+..+|+
T Consensus 153 ~d~~~~~~~L~~l~~~~~~~~~~--~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 153 YNRRALMRFVTSVKSGSDYACAP--VYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTG 209 (312)
T ss_dssp BCHHHHHHHHHHHHTTCSCEEEE--EEETTTTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred HHHHHHHHHHHHhCCCcccCCcc--cCChhhhhhhhhHHHhccCCCEEEECCccccCCc
Confidence 112223333332221 011122 3599999999999999999999999999999974
No 72
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.89 E-value=1.2e-25 Score=177.15 Aligned_cols=127 Identities=19% Similarity=0.220 Sum_probs=85.8
Q ss_pred ecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeecc---------------eeeeeecCcccccCcc
Q psy10767 7 SSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVR---------------DIGYMPQVGLMRSGAL 71 (149)
Q Consensus 7 ~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~~---------------~i~~~~q~~~~~~~~~ 71 (149)
+++||++++|++++|+|||||||||++++|+|+++|++|+|.+.+.+.. .++|++|++. ..
T Consensus 91 ~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~----~~ 166 (302)
T 3b9q_A 91 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGD----KA 166 (302)
T ss_dssp CSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC------CC
T ss_pred cccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCC----cc
Confidence 5789999999999999999999999999999999999999999886641 3788888632 01
Q ss_pred cccCChhHHHhhcccCchHHHHHHHhhhhHH---HHhhcCCCCCChhHHHHHHHHHHHhcCCC--EEEEcCCCCCCCcCC
Q psy10767 72 LAEDSPSYLLEYYNCSTLEDVFLYLCEQDQI---LFSLVGSESAFGGQQRRVSFAVSLIHDPK--ILILDEPTVGLDPVL 146 (149)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~sgGqkqrv~iaral~~~p~--illlDEPt~gLD~~~ 146 (149)
.+..++.++..+....... ..+.+..++ ....... +| |||++||||++.+|+ +|+|| ||+|+|+..
T Consensus 167 ~~~~~v~e~l~~~~~~~~d---~~lldt~gl~~~~~~~~~e--LS---kqr~~iaral~~~P~e~lLvLD-ptsglD~~~ 237 (302)
T 3b9q_A 167 KAATVLSKAVKRGKEEGYD---VVLCDTSGRLHTNYSLMEE--LI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLP 237 (302)
T ss_dssp CHHHHHHHHHHHHHHTTCS---EEEECCCCCSSCCHHHHHH--HH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHH
T ss_pred CHHHHHHHHHHHHHHcCCc---chHHhcCCCCcchhHHHHH--HH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHH
Confidence 2222233332211000000 001111111 1111122 25 999999999999999 99999 999999853
No 73
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.88 E-value=1.7e-23 Score=168.45 Aligned_cols=37 Identities=19% Similarity=0.278 Sum_probs=34.1
Q ss_pred CCChhHHHHHHHHHHHh------cCCCEEEEcCCCCCCCcCCC
Q psy10767 111 SAFGGQQRRVSFAVSLI------HDPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 111 ~~sgGqkqrv~iaral~------~~p~illlDEPt~gLD~~~~ 147 (149)
.+|||||||++|||||+ .+|++|||||||++||+..+
T Consensus 279 ~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~ 321 (365)
T 3qf7_A 279 GLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENK 321 (365)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHH
T ss_pred hCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHH
Confidence 46999999999999999 79999999999999998754
No 74
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.88 E-value=3.6e-24 Score=156.91 Aligned_cols=101 Identities=17% Similarity=0.097 Sum_probs=66.4
Q ss_pred EEEEECCCCCCHHHHHHHHhcCccCCcceEEECCee---------cceeeeeecCcccccCcccccCChhHHHhhcccCc
Q psy10767 18 AYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSART---------VRDIGYMPQVGLMRSGALLAEDSPSYLLEYYNCST 88 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~---------~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (149)
.++|+||||||||||+++|+|++.. .++|.+ -+.++|++|+... .... ........
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i-----~~~g~~~~~~~~~~~~~~ig~~~~~~~~-------~~~~---~~~~~~~~ 66 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGK-----RAIGFWTEEVRDPETKKRTGFRIITTEG-------KKKI---FSSKFFTS 66 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGG-----GEEEEEEEEEC------CCEEEEEETTC-------CEEE---EEETTCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC-----cCCCEEhhhhccccccceeEEEeecCcH-------HHHH---HHhhcCCc
Confidence 5899999999999999999999852 233321 1357888886310 0000 00000000
Q ss_pred hHHHHHHHhhhhHHHHhhcCCCCCChhHHHHHHHHHH-----HhcCCCEEEEcC--CCCCCCcCC
Q psy10767 89 LEDVFLYLCEQDQILFSLVGSESAFGGQQRRVSFAVS-----LIHDPKILILDE--PTVGLDPVL 146 (149)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~sgGqkqrv~iara-----l~~~p~illlDE--Pt~gLD~~~ 146 (149)
. ....+... .+|+|||||++|||| ++.+|+++|||| ||++||+..
T Consensus 67 -~----------~~~~~~~~--~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~ 118 (178)
T 1ye8_A 67 -K----------KLVGSYGV--NVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKF 118 (178)
T ss_dssp -S----------SEETTEEE--CHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHH
T ss_pred -c----------cccccccc--CcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHH
Confidence 0 00122222 348999999999996 999999999999 999999864
No 75
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.87 E-value=1.2e-24 Score=175.05 Aligned_cols=127 Identities=19% Similarity=0.220 Sum_probs=86.1
Q ss_pred ecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeecc---------------eeeeeecCcccccCcc
Q psy10767 7 SSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVR---------------DIGYMPQVGLMRSGAL 71 (149)
Q Consensus 7 ~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~~---------------~i~~~~q~~~~~~~~~ 71 (149)
.++||++++|++++|+||||||||||+++|+|+++|++|+|.+.+.+.. .+++++|++. ..
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~----~~ 223 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGD----KA 223 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSS----SC
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEeccc----cc
Confidence 5789999999999999999999999999999999999999999886641 3788888632 01
Q ss_pred cccCChhHHHhhcccCchHHHHHHHhhhhHH---HHhhcCCCCCChhHHHHHHHHHHHhcCCC--EEEEcCCCCCCCcCC
Q psy10767 72 LAEDSPSYLLEYYNCSTLEDVFLYLCEQDQI---LFSLVGSESAFGGQQRRVSFAVSLIHDPK--ILILDEPTVGLDPVL 146 (149)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~sgGqkqrv~iaral~~~p~--illlDEPt~gLD~~~ 146 (149)
.+..++.++..+......+ ..+.+..++ ....... +| |||++|||+++.+|+ +|+|| ||+|+|+..
T Consensus 224 ~p~~tv~e~l~~~~~~~~d---~~lldt~Gl~~~~~~~~~e--LS---kqr~~iaral~~~P~e~lLvLD-pttglD~~~ 294 (359)
T 2og2_A 224 KAATVLSKAVKRGKEEGYD---VVLCDTSGRLHTNYSLMEE--LI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLP 294 (359)
T ss_dssp CHHHHHHHHHHHHHHTTCS---EEEEECCCCSSCCHHHHHH--HH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHH
T ss_pred ChhhhHHHHHHHHHhCCCH---HHHHHhcCCChhhhhHHHH--HH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHH
Confidence 2222233332211000000 001111111 1111122 25 999999999999999 99999 999999854
No 76
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.87 E-value=2.6e-22 Score=158.71 Aligned_cols=37 Identities=24% Similarity=0.301 Sum_probs=33.3
Q ss_pred CCChhHHHHHHHHHHHh----cCCCEEEEcCCCCCCCcCCC
Q psy10767 111 SAFGGQQRRVSFAVSLI----HDPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 111 ~~sgGqkqrv~iaral~----~~p~illlDEPt~gLD~~~~ 147 (149)
.+|+|||||++|||+|+ .+|+++||||||++||+..+
T Consensus 219 ~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~ 259 (322)
T 1e69_A 219 LLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNA 259 (322)
T ss_dssp GSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHH
T ss_pred hCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHH
Confidence 46999999999999997 68999999999999998643
No 77
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.87 E-value=2.2e-24 Score=170.18 Aligned_cols=117 Identities=14% Similarity=0.160 Sum_probs=78.4
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeecceeeeeecCcccccCcccccCChhHHHhh
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAEDSPSYLLEY 83 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~ 83 (149)
++|+++||++++|++++|+||||||||||+++|+|++ +|+|. ++++|++.++...+. +. +..+
T Consensus 114 ~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I~---------~~v~q~~~lf~~ti~-~~----ni~~ 176 (305)
T 2v9p_A 114 NALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSVL---------SFANHKSHFWLASLA-DT----RAAL 176 (305)
T ss_dssp HHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEEE---------CGGGTTSGGGGGGGT-TC----SCEE
T ss_pred hhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceEE---------EEecCccccccccHH-HH----hhcc
Confidence 3689999999999999999999999999999999999 78884 456776543332211 10 1111
Q ss_pred cccCchHHHHHHHhhhhHHHHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCCCC
Q psy10767 84 YNCSTLEDVFLYLCEQDQILFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLSF 148 (149)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~~~ 148 (149)
.. .... ......+.. +.. ......+||||||| |||++.+|+||| |++||+..+.
T Consensus 177 ~~-~~~~-~~~~~i~~~-L~~-gldg~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~ 230 (305)
T 2v9p_A 177 VD-DATH-ACWRYFDTY-LRN-ALDGYPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQAED 230 (305)
T ss_dssp EE-EECH-HHHHHHHHT-TTG-GGGTCCEECCCSSC---CCCEECCCCEEE----EESSCSTTCG
T ss_pred Cc-cccH-HHHHHHHHH-hHc-cCCccCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHH
Confidence 10 0001 111111110 000 01134569999999 999999999999 9999998754
No 78
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.87 E-value=3e-23 Score=165.16 Aligned_cols=92 Identities=20% Similarity=0.207 Sum_probs=73.6
Q ss_pred ceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeecceeeeeecCcccccCcccccCChhHHHhhc
Q psy10767 5 SASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAEDSPSYLLEYY 84 (149)
Q Consensus 5 ~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~ 84 (149)
+++++||.+++|++++|+||||||||||+++|+|+++|++|.|.++|.+ .+. .++. ... ..+.
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~--e~~-~~~~----------~~~----i~~~ 222 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTE--EIV-FKHH----------KNY----TQLF 222 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSC--CCC-CSSC----------SSE----EEEE
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCee--ccc-cccc----------hhE----EEEE
Confidence 5789999999999999999999999999999999999999999998753 110 0000 000 0000
Q ss_pred ccCchHHHHHHHhhhhHHHHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCC
Q psy10767 85 NCSTLEDVFLYLCEQDQILFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTV 140 (149)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~ 140 (149)
. .+||+||++|||||..+|+++++||||+
T Consensus 223 ~---------------------------ggg~~~r~~la~aL~~~p~ilildE~~~ 251 (330)
T 2pt7_A 223 F---------------------------GGNITSADCLKSCLRMRPDRIILGELRS 251 (330)
T ss_dssp C---------------------------BTTBCHHHHHHHHTTSCCSEEEECCCCS
T ss_pred e---------------------------CCChhHHHHHHHHhhhCCCEEEEcCCCh
Confidence 0 0799999999999999999999999997
No 79
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.81 E-value=1.5e-21 Score=148.69 Aligned_cols=127 Identities=13% Similarity=0.066 Sum_probs=73.3
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeecceeeeeecCcccccCcccccCChhHHHhh
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAEDSPSYLLEY 83 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~ 83 (149)
.+++|+||++++|+++||+||||||||||+++|+|++ |.+.++ ...+.+++++|+..+ ...+..++...
T Consensus 13 ~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~-~~~~~i~~v~~d~~~------~~l~~~~~~~~ 81 (245)
T 2jeo_A 13 LGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVE-QRQRKVVILSQDRFY------KVLTAEQKAKA 81 (245)
T ss_dssp ----------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSC-GGGCSEEEEEGGGGB------CCCCHHHHHHH
T ss_pred eeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhccc-ccCCceEEEeCCcCc------cccCHhHhhhh
Confidence 5799999999999999999999999999999999976 555444 122468899997422 12233322221
Q ss_pred c----ccCc----hHHHHHHHhhhh-HHHHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCc
Q psy10767 84 Y----NCST----LEDVFLYLCEQD-QILFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDP 144 (149)
Q Consensus 84 ~----~~~~----~~~~~~~~~~~~-~~~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~ 144 (149)
. .... ........++.. ........ .+|+||+||+++ ++++.+|+++|+|||....+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~--~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~ 148 (245)
T 2jeo_A 82 LKGQYNFDHPDAFDNDLMHRTLKNIVEGKTVEVP--TYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQ 148 (245)
T ss_dssp HTTCCCTTSGGGBCHHHHHHHHHHHHTTCCEEEC--CEETTTTEECSS-CEEECCCSEEEEECTTTTTSH
T ss_pred hccCCCCCCcccccHHHHHHHHHHHHCCCCeecc--cccccccCccCc-eEEecCCCEEEEeCccccccH
Confidence 1 1110 011111221111 00111222 358999999988 688899999999999877653
No 80
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.79 E-value=3.4e-20 Score=143.24 Aligned_cols=96 Identities=18% Similarity=0.265 Sum_probs=71.5
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCC-cceEEECCeecceeeeeecCcccccCcccccCChhHHHh
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLD-HGSISLSARTVRDIGYMPQVGLMRSGALLAEDSPSYLLE 82 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~-~G~i~~~g~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~ 82 (149)
++++++| +.+|++++|+||||||||||+++|+|+++|+ +|+|.++|.+ +.|++|... .+...
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~---i~~~~~~~~----~~v~q-------- 77 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDP---IEYVFKHKK----SIVNQ-------- 77 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESS---CCSCCCCSS----SEEEE--------
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCc---ceeecCCcc----eeeeH--------
Confidence 4678888 8999999999999999999999999999998 9999998864 455555311 00000
Q ss_pred hcccCchHHHHHHHhhhhHHHHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcC
Q psy10767 83 YYNCSTLEDVFLYLCEQDQILFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPV 145 (149)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~ 145 (149)
. . ++.. ...-|++||++|..+|+++++|||| |+.
T Consensus 78 ----~-----------~-------~gl~----~~~l~~~la~aL~~~p~illlDEp~---D~~ 111 (261)
T 2eyu_A 78 ----R-----------E-------VGED----TKSFADALRAALREDPDVIFVGEMR---DLE 111 (261)
T ss_dssp ----E-----------E-------BTTT----BSCHHHHHHHHHHHCCSEEEESCCC---SHH
T ss_pred ----H-----------H-------hCCC----HHHHHHHHHHHHhhCCCEEEeCCCC---CHH
Confidence 0 0 0000 0112899999999999999999999 654
No 81
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.75 E-value=7.8e-21 Score=141.23 Aligned_cols=62 Identities=26% Similarity=0.282 Sum_probs=37.0
Q ss_pred CccceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCee-----cceeeeeecCcc
Q psy10767 2 ADVSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSART-----VRDIGYMPQVGL 65 (149)
Q Consensus 2 ~~~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~-----~~~i~~~~q~~~ 65 (149)
++++++| .++++|++++|+||||||||||+|+|+|+++...+.+.+.+.. .+.++|+||++.
T Consensus 8 ~~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~i~~~~~~~~~~~~~~~~~~i~~~~q~~~ 74 (207)
T 1znw_A 8 TKPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGEVDGVDYHFIDPT 74 (207)
T ss_dssp -------------CCCEEEEECSTTSSHHHHHHHHHHHSTTCEECCCEESSCCCTTCCBTTTBEECCHH
T ss_pred CCcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCceEEcccccccCCcccccCCCeeEecCHH
Confidence 4567788 7999999999999999999999999999985322222111111 135889999753
No 82
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.74 E-value=1.5e-19 Score=148.79 Aligned_cols=121 Identities=20% Similarity=0.201 Sum_probs=80.8
Q ss_pred ceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCe---ec--------------ceeeeeecCcccc
Q psy10767 5 SASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSAR---TV--------------RDIGYMPQVGLMR 67 (149)
Q Consensus 5 ~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~---~~--------------~~i~~~~q~~~~~ 67 (149)
+++++ |++.+|++++|+||||||||||+++|+|+.+|+.|.|.++|+ ++ +.++|++|..
T Consensus 147 vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~v~q~~--- 222 (438)
T 2dpy_A 147 AINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGPDGRARSVVIAAPAD--- 222 (438)
T ss_dssp HHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTHHHHHHTEEEEEECTT---
T ss_pred EEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhccccccCceEEEEECCC---
Confidence 68899 999999999999999999999999999999999999999987 32 3478999852
Q ss_pred cCcccccCChhHHHhhcccCchHHHHHHHhhhhHHHHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCCC
Q psy10767 68 SGALLAEDSPSYLLEYYNCSTLEDVFLYLCEQDQILFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~~ 147 (149)
.....+.++.++..... +............... ...+|+|| ||++|| +.+|++ |+|||+..+
T Consensus 223 -~~~~~~~~v~~~~~~~a-----e~~~~~~~~v~~~ld~--l~~lS~g~-qrvslA---l~~p~~------t~glD~~~~ 284 (438)
T 2dpy_A 223 -VSPLLRMQGAAYATRIA-----EDFRDRGQHVLLIMDS--LTRYAMAQ-REIALA---IGEPPA------TKGYPPSVF 284 (438)
T ss_dssp -SCHHHHHHHHHHHHHHH-----HHHHTTTCEEEEEEEC--HHHHHHHH-HHHHHH---TTCCCC------SSSCCTTHH
T ss_pred -CCHHHHHHHHHHHHHHH-----HHHHhCCCCHHHHHHh--HHHHHHHH-HHHHHH---hCCCcc------cccCCHHHH
Confidence 11222222322221110 0000000000000000 11237999 999999 888988 999999754
No 83
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.73 E-value=3.5e-20 Score=145.65 Aligned_cols=125 Identities=18% Similarity=0.184 Sum_probs=58.4
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcC-ccCCcceEEECCeec------ceeeeeecCcccccCcccccCC
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNR-LRLDHGSISLSARTV------RDIGYMPQVGLMRSGALLAEDS 76 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~-~~~~~G~i~~~g~~~------~~i~~~~q~~~~~~~~~~~~~~ 76 (149)
.++++++|+| +|+||||||||||+++|.|. ..|++| +.++|.++ ..+++++|...... .+...++
T Consensus 12 ~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~t~~~~~~~~~~q~~~~~~-~ltv~Dt 83 (301)
T 2qnr_A 12 SVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIERTVQIEASTVEIEERGVKL-RLTVVDT 83 (301)
T ss_dssp ------CEEE------EEEEETTSSHHHHHHHHHC-------------------------CEEEEC---CCE-EEEEEEE
T ss_pred EEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCCcceEeeEEEEecCCCccc-Ccchhhh
Confidence 3678899988 89999999999999999998 888888 77665433 34677777532211 1111222
Q ss_pred hhHHHhhcccCchHHHHHHHhhhhHHHHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCC-CCcC
Q psy10767 77 PSYLLEYYNCSTLEDVFLYLCEQDQILFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVG-LDPV 145 (149)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~g-LD~~ 145 (149)
+..................+.. ........+ |+|||||+.+|||++ ++++||||++ ||+.
T Consensus 84 ~g~~~~~~~~e~~~~l~~~l~~---~~~~~~~~~--sgg~rqrv~~ara~~----ll~ldePt~~~Ld~~ 144 (301)
T 2qnr_A 84 PGYGDAINCRDCFKTIISYIDE---QFERYLHDE--SGLNRRHIIDNRVHC----CFYFISPFGHGLKPL 144 (301)
T ss_dssp C-----------CTTHHHHHHH---HHHHHHHHH--TSSCCTTCCCCCCCE----EEEEECSSSSSCCHH
T ss_pred hhhhhhcCcHHHHHHHHHHHHH---HHHHHHHHh--CHHhhhhhhhhhhhh----eeeeecCcccCCCHH
Confidence 2111000000000011111111 112223333 899999999999886 9999999985 9974
No 84
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.73 E-value=8e-19 Score=152.66 Aligned_cols=104 Identities=19% Similarity=0.150 Sum_probs=75.4
Q ss_pred ccceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCcc-CCcceEEECCeecceeeeeecCcccccCcccccCChhHHH
Q psy10767 3 DVSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLR-LDHGSISLSARTVRDIGYMPQVGLMRSGALLAEDSPSYLL 81 (149)
Q Consensus 3 ~~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~-~~~G~i~~~g~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~ 81 (149)
.++++|+||+ |++++|+||||||||||+|+|+|+.. ++.|.+.-. ....+++++|. +...+..++.
T Consensus 566 ~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~vpa--~~~~i~~v~~i--------~~~~~~~d~l 632 (765)
T 1ewq_A 566 EFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFVPA--EEAHLPLFDGI--------YTRIGASDDL 632 (765)
T ss_dssp CCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBSS--SEEEECCCSEE--------EEECCC----
T ss_pred ceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCceeeh--hccceeeHHHh--------hccCCHHHHH
Confidence 4678899998 99999999999999999999999874 677765321 11235555441 1111111100
Q ss_pred hhcccCchHHHHHHHhhhhHHHHhhcCCCCCChhHHHHHHHHHHH--hcCCCEEEEcCC---CCCCCcCC
Q psy10767 82 EYYNCSTLEDVFLYLCEQDQILFSLVGSESAFGGQQRRVSFAVSL--IHDPKILILDEP---TVGLDPVL 146 (149)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgGqkqrv~iaral--~~~p~illlDEP---t~gLD~~~ 146 (149)
. ..+|+|++|++.+++++ +.+|+++||||| |++||+..
T Consensus 633 -------------------------~--~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~ 675 (765)
T 1ewq_A 633 -------------------------A--GGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVA 675 (765)
T ss_dssp -----------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHH
T ss_pred -------------------------H--hcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHH
Confidence 0 02378999999999999 999999999999 99999753
No 85
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.72 E-value=2.1e-19 Score=141.65 Aligned_cols=117 Identities=15% Similarity=0.062 Sum_probs=71.0
Q ss_pred CCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeecc---------------eeeeeecCcccccCcccccCChhH
Q psy10767 15 GVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVR---------------DIGYMPQVGLMRSGALLAEDSPSY 79 (149)
Q Consensus 15 ~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~~---------------~i~~~~q~~~~~~~~~~~~~~~~~ 79 (149)
+|++++|+||||||||||+++|+|+++|++|+|.+.+.++. .+++++|... ..+..++.+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~-----~~p~~~v~~ 175 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEG-----TDSAALAYD 175 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTT-----CCHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCC-----CCHHHHHHH
Confidence 68999999999999999999999999999999999887641 3677877631 122222222
Q ss_pred HHhhcccCchHHHHHHHhhhhHHHHhhcCCCCCChhHHHHHHHHHHHhcCCC--EEEEcCCCCCC
Q psy10767 80 LLEYYNCSTLEDVFLYLCEQDQILFSLVGSESAFGGQQRRVSFAVSLIHDPK--ILILDEPTVGL 142 (149)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgGqkqrv~iaral~~~p~--illlDEPt~gL 142 (149)
+...... ......+.+..+........ .+..++||++||||++.+|+ ++.|| |+++.
T Consensus 176 ~v~~~~~---~~~d~~llDt~G~~~~~~~~--~~eLs~~r~~iaRal~~~P~~~lLvLD-a~t~~ 234 (304)
T 1rj9_A 176 AVQAMKA---RGYDLLFVDTAGRLHTKHNL--MEELKKVKRAIAKADPEEPKEVWLVLD-AVTGQ 234 (304)
T ss_dssp HHHHHHH---HTCSEEEECCCCCCTTCHHH--HHHHHHHHHHHHHHCTTCCSEEEEEEE-TTBCT
T ss_pred HHHHHHh---CCCCEEEecCCCCCCchHHH--HHHHHHHHHHHHHhhcCCCCeEEEEEc-HHHHH
Confidence 2211000 00000000000000000000 13466899999999999999 66677 55544
No 86
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.72 E-value=8.3e-18 Score=135.24 Aligned_cols=36 Identities=33% Similarity=0.456 Sum_probs=33.7
Q ss_pred CChhHHHHHHHHHHHh---------cCCCEEEEcCCCCCCCcCCC
Q psy10767 112 AFGGQQRRVSFAVSLI---------HDPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 112 ~sgGqkqrv~iaral~---------~~p~illlDEPt~gLD~~~~ 147 (149)
+|+|||||++||++|+ .+|+||||||||++||+..+
T Consensus 266 lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~ 310 (359)
T 2o5v_A 266 ASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRR 310 (359)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHH
Confidence 6899999999999999 89999999999999998654
No 87
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.72 E-value=1.1e-18 Score=153.97 Aligned_cols=107 Identities=13% Similarity=0.165 Sum_probs=69.7
Q ss_pred ccceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCC-cceEEECCeecceeeeeecCccccc--CcccccCChhH
Q psy10767 3 DVSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLD-HGSISLSARTVRDIGYMPQVGLMRS--GALLAEDSPSY 79 (149)
Q Consensus 3 ~~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~-~G~i~~~g~~~~~i~~~~q~~~~~~--~~~~~~~~~~~ 79 (149)
.++++|+||++++|++++|+||||||||||||+|+++.... .| .++|....... ..++...
T Consensus 660 ~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g------------~~vpa~~~~i~~~d~i~~~i---- 723 (918)
T 3thx_B 660 QYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQIG------------SYVPAEEATIGIVDGIFTRM---- 723 (918)
T ss_dssp SSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHT------------CCBSSSEEEEECCSEEEEEC----
T ss_pred ceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhhcC------------ccccchhhhhhHHHHHHHhC----
Confidence 47889999999999999999999999999999998653211 11 12222110000 0000000
Q ss_pred HHhhcccCchHHHHHHHhhhhHHHHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCC
Q psy10767 80 LLEYYNCSTLEDVFLYLCEQDQILFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVL 146 (149)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~ 146 (149)
+ ..+. ... +...+|+||+|++.|+++ +.+|+++||||||+|+|+..
T Consensus 724 -----g---~~d~----------l~~--~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~ 769 (918)
T 3thx_B 724 -----G---AADN----------IYK--GRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHD 769 (918)
T ss_dssp ------------------------------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHH
T ss_pred -----C---hHHH----------HHH--hHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHH
Confidence 0 0000 001 112237999999999999 89999999999999999853
No 88
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.72 E-value=1.8e-18 Score=152.97 Aligned_cols=100 Identities=13% Similarity=0.054 Sum_probs=67.3
Q ss_pred ccceecceEEEeCCcEEEEECCCCCCHHHHHHHH--------hcCccCCcceEEECCeecceeeeeecCcccccCccccc
Q psy10767 3 DVSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCI--------VNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAE 74 (149)
Q Consensus 3 ~~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i--------~g~~~~~~G~i~~~g~~~~~i~~~~q~~~~~~~~~~~~ 74 (149)
.++++|++|++++|++++|+||||||||||||+| .|.+-|.++.. ++.+.+ ++..
T Consensus 649 ~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~---------~~~~d~--------i~~~ 711 (934)
T 3thx_A 649 AFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAE---------VSIVDC--------ILAR 711 (934)
T ss_dssp CCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEE---------EECCSE--------EEEE
T ss_pred eeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccccc---------chHHHH--------HHHh
Confidence 3688999999999999999999999999999999 55444433211 111000 0000
Q ss_pred CChhHHHhhcccCchHHHHHHHhhhhHHHHhhcCCCCCChhHHHHHHHHHHH--hcCCCEEEEcCCCCCCCcCC
Q psy10767 75 DSPSYLLEYYNCSTLEDVFLYLCEQDQILFSLVGSESAFGGQQRRVSFAVSL--IHDPKILILDEPTVGLDPVL 146 (149)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgGqkqrv~iaral--~~~p~illlDEPt~gLD~~~ 146 (149)
. +.. +. ... .+|++++++..+|+++ +.+|+++||||||+|+|+..
T Consensus 712 i---------g~~--d~--------------l~~--~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~ 758 (934)
T 3thx_A 712 V---------GAG--DS--------------QLK--GVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYD 758 (934)
T ss_dssp C---------C---------------------------CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHH
T ss_pred c---------Cch--hh--------------HHH--hHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHH
Confidence 0 000 00 001 1277777777788777 89999999999999999853
No 89
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.71 E-value=2.9e-18 Score=143.52 Aligned_cols=112 Identities=17% Similarity=0.066 Sum_probs=72.9
Q ss_pred eEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeecceeeeeecCcccccCcccccCChhHHHhhcccCch
Q psy10767 10 NTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAEDSPSYLLEYYNCSTL 89 (149)
Q Consensus 10 ~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (149)
+..+.+|++++|+||||||||||+++++|...++ |+ +-+.+.+|++.. ........++.. .
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~--------~vi~~~~ee~~~---------~l~~~~~~~g~~-~ 335 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACAN-KE--------RAILFAYEESRA---------QLLRNAYSWGMD-F 335 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TC--------CEEEEESSSCHH---------HHHHHHHTTSCC-H
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CC--------CEEEEEEeCCHH---------HHHHHHHHcCCC-H
Confidence 4589999999999999999999999999998875 54 113344554210 011111111111 1
Q ss_pred HHHHHHHhhhhHHHHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcC
Q psy10767 90 EDVFLYLCEQDQILFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPV 145 (149)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~ 145 (149)
.+ ... ......... ....+|+||+||+++|+++..+|+++|+| ||++||+.
T Consensus 336 ~~-~~~-~g~~~~~~~--~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~ 386 (525)
T 1tf7_A 336 EE-MER-QNLLKIVCA--YPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARG 386 (525)
T ss_dssp HH-HHH-TTSEEECCC--CGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSS
T ss_pred HH-HHh-CCCEEEEEe--ccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhh
Confidence 11 100 000011111 12345999999999999999999999999 99999987
No 90
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.71 E-value=2.4e-17 Score=131.12 Aligned_cols=37 Identities=35% Similarity=0.458 Sum_probs=32.6
Q ss_pred CCChhHHH------HHHHHHHHhcCCCEEEEcCCCCCCCcCCC
Q psy10767 111 SAFGGQQR------RVSFAVSLIHDPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 111 ~~sgGqkq------rv~iaral~~~p~illlDEPt~gLD~~~~ 147 (149)
.+|||||| |+++|++++.+|++|||||||++||+..+
T Consensus 248 ~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~ 290 (339)
T 3qkt_A 248 FLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERR 290 (339)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHH
T ss_pred HCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHH
Confidence 46999999 67788888899999999999999998653
No 91
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.70 E-value=1.2e-18 Score=135.59 Aligned_cols=47 Identities=17% Similarity=0.140 Sum_probs=42.5
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcc-eEEEC
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHG-SISLS 50 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G-~i~~~ 50 (149)
..|+++++.+.+|++++|+||||||||||+++|+|...|++| .|.+.
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~ 70 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLA 70 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEE
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence 368999999999999999999999999999999999999877 67553
No 92
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.70 E-value=2.9e-19 Score=132.06 Aligned_cols=110 Identities=19% Similarity=0.173 Sum_probs=69.3
Q ss_pred CcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec-------ceeeeeecCcccccCcccccCChhHHHhhcccCc
Q psy10767 16 VTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV-------RDIGYMPQVGLMRSGALLAEDSPSYLLEYYNCST 88 (149)
Q Consensus 16 g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~-------~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (149)
|++++|+||||||||||+++|+|+++ ++| |.++|... +.++|++|+.. ... . +........
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~~~~~~~ig~~~~~~~---g~~-~------~l~~~~~~~ 68 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEVRQGGRRIGFDVVTLS---GTR-G------PLSRVGLEP 68 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEEETTSSEEEEEEEETT---SCE-E------EEEECCCCC
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchhHhhhceEEEEEEecc---cce-e------hhhcccccC
Confidence 68899999999999999999999998 899 98877544 34788887521 100 0 000000000
Q ss_pred hHHHHHHHhhhhHHHHhhcCCCCCChhHHHHH-HHHH---HHhcCCCEEEEcC--CCCCCCcC
Q psy10767 89 LEDVFLYLCEQDQILFSLVGSESAFGGQQRRV-SFAV---SLIHDPKILILDE--PTVGLDPV 145 (149)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~sgGqkqrv-~iar---al~~~p~illlDE--Pt~gLD~~ 145 (149)
... .......+... .+|+|||+++ ++++ |+..+|+++|+|| |+..+|+.
T Consensus 69 ~~~------~~~~~v~~~~~--~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~ 123 (189)
T 2i3b_A 69 PPG------KRECRVGQYVV--DLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQL 123 (189)
T ss_dssp CSS------SCCEESSSSEE--CHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSH
T ss_pred Ccc------ccccccceEEE--cchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHH
Confidence 000 00000000011 1368898887 4444 6899999999999 88888764
No 93
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.69 E-value=9e-20 Score=135.08 Aligned_cols=117 Identities=13% Similarity=0.035 Sum_probs=73.4
Q ss_pred EeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeecceeeeeecCcccccCcccccCChhHHHhhc-ccC--ch
Q psy10767 13 IFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAEDSPSYLLEYY-NCS--TL 89 (149)
Q Consensus 13 ~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~-~~~--~~ 89 (149)
.++|+++||+||||||||||+++|+|++.| .+++++|++.++.. ...+...+..+. ... ..
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~-------------~i~~v~~d~~~~~~---~~~~~~~~~~~~~~~~~~~~ 66 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE-------------RVALLPMDHYYKDL---GHLPLEERLRVNYDHPDAFD 66 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG-------------GEEEEEGGGCBCCC---TTSCHHHHHHSCTTSGGGBC
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC-------------CeEEEecCccccCc---ccccHHHhcCCCCCChhhhh
Confidence 578999999999999999999999999875 47888887644321 122232222211 100 11
Q ss_pred HHHHHHHhhhhHHHHh-hcCCCCCChhH----HHHHHHHHHHhcCCCEEEEcCCCCC-------CCcC
Q psy10767 90 EDVFLYLCEQDQILFS-LVGSESAFGGQ----QRRVSFAVSLIHDPKILILDEPTVG-------LDPV 145 (149)
Q Consensus 90 ~~~~~~~~~~~~~~~~-~~~~~~~sgGq----kqrv~iaral~~~p~illlDEPt~g-------LD~~ 145 (149)
.+.....++....... ......+|+|| +||++++++++.+|+++++||||++ ||+.
T Consensus 67 ~~~~~~~l~~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~ 134 (211)
T 3asz_A 67 LALYLEHAQALLRGLPVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDAD 134 (211)
T ss_dssp HHHHHHHHHHHHTTCCEEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECC
T ss_pred HHHHHHHHHHHHcCCCcCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCC
Confidence 2222222222222110 01122346775 5788999999999999999999999 7765
No 94
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.69 E-value=6.2e-18 Score=150.83 Aligned_cols=109 Identities=18% Similarity=0.179 Sum_probs=73.5
Q ss_pred ccceecceEEEeC-------CcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeecceee-eeecCcccccCccccc
Q psy10767 3 DVSASSLNTVIFG-------VTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIG-YMPQVGLMRSGALLAE 74 (149)
Q Consensus 3 ~~~~~~i~~~~~~-------g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~~~i~-~~~q~~~~~~~~~~~~ 74 (149)
.++++|++|++.+ |++++|+||||||||||||+| |++.+ ...+| ||||+.. .+...
T Consensus 769 ~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~-----------~aqiG~~Vpq~~~----~l~v~ 832 (1022)
T 2o8b_B 769 DFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV-----------MAQMGCYVPAEVC----RLTPI 832 (1022)
T ss_dssp CCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH-----------HHTTTCCEESSEE----EECCC
T ss_pred ceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH-----------HhheeEEeccCcC----CCCHH
Confidence 3688999999987 899999999999999999999 99874 23466 8999742 11111
Q ss_pred CChhHHHhhcccCchHHHHHHHhhhhHHHHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCC
Q psy10767 75 DSPSYLLEYYNCSTLEDVFLYLCEQDQILFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVL 146 (149)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~ 146 (149)
+.+. ... ...+... . +...+|++++ ++++|++++.+|+++|||||++|+|+..
T Consensus 833 d~I~-----~ri-g~~d~~~----------~--~~stf~~em~-~~a~al~la~~~sLlLLDEp~~Gtd~~d 885 (1022)
T 2o8b_B 833 DRVF-----TRL-GASDRIM----------S--GESTFFVELS-ETASILMHATAHSLVLVDELGRGTATFD 885 (1022)
T ss_dssp SBEE-----EEC-C---------------------CHHHHHHH-HHHHHHHHCCTTCEEEEECTTTTSCHHH
T ss_pred HHHH-----HHc-CCHHHHh----------h--chhhhHHHHH-HHHHHHHhCCCCcEEEEECCCCCCChHH
Confidence 1110 000 0111000 0 1111245555 5999999999999999999999999753
No 95
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.69 E-value=1.5e-18 Score=129.15 Aligned_cols=31 Identities=26% Similarity=0.279 Sum_probs=28.6
Q ss_pred EEeCCcEEEEECCCCCCHHHHHHHHhcCccC
Q psy10767 12 VIFGVTAYGLLGPSGCGKTTLLSCIVNRLRL 42 (149)
Q Consensus 12 ~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~ 42 (149)
.+++|++++|+||||||||||+++|+|...+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~ 51 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQL 51 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTS
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 5899999999999999999999999996655
No 96
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.68 E-value=2.1e-18 Score=138.04 Aligned_cols=111 Identities=21% Similarity=0.132 Sum_probs=75.1
Q ss_pred ceecc-eEEEeCCcEEEEECCCCCCHHHHHHHHhcCc--cCCc----ce-EEECCeec---ceeeeeecCcccccCcccc
Q psy10767 5 SASSL-NTVIFGVTAYGLLGPSGCGKTTLLSCIVNRL--RLDH----GS-ISLSARTV---RDIGYMPQVGLMRSGALLA 73 (149)
Q Consensus 5 ~~~~i-~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~--~~~~----G~-i~~~g~~~---~~i~~~~q~~~~~~~~~~~ 73 (149)
.|+.+ ++.+++|++++|+||||||||||++++++.. +|++ |. |++++... ..+++++|...
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i~~i~q~~~-------- 190 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRG-------- 190 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHHHHHHHTTT--------
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHHHHHHHHcC--------
Confidence 34544 6789999999999999999999999999998 6666 57 78877542 22333433210
Q ss_pred cCChhHHHhhcccCchHHHHHHHhhhhHHHHhhcCCCCCChhHHHHHHHHHHHh-------cCCCEEEEcCCCCCCCcC
Q psy10767 74 EDSPSYLLEYYNCSTLEDVFLYLCEQDQILFSLVGSESAFGGQQRRVSFAVSLI-------HDPKILILDEPTVGLDPV 145 (149)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgGqkqrv~iaral~-------~~p~illlDEPt~gLD~~ 145 (149)
.. .. .+.+.... . .... |.+++|++.++++++ .+|+++|+||||+++|+.
T Consensus 191 ------------~~-~~----~v~~ni~~-~--~~~~--~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~ 247 (349)
T 1pzn_A 191 ------------LD-PD----EVLKHIYV-A--RAFN--SNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSE 247 (349)
T ss_dssp ------------CC-HH----HHGGGEEE-E--ECCS--HHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHH
T ss_pred ------------CC-HH----HHhhCEEE-E--ecCC--hHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhh
Confidence 00 00 00000000 0 0011 467888999999888 689999999999999875
No 97
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.66 E-value=5.8e-18 Score=127.43 Aligned_cols=42 Identities=19% Similarity=0.165 Sum_probs=36.0
Q ss_pred EEeCCcEEEEECCCCCCHHHHHHHHh--cCccCCcceEEECCee
Q psy10767 12 VIFGVTAYGLLGPSGCGKTTLLSCIV--NRLRLDHGSISLSART 53 (149)
Q Consensus 12 ~~~~g~~~~iiG~nGaGKSTLl~~i~--g~~~~~~G~i~~~g~~ 53 (149)
.+++|++++|+||||||||||+++|+ |+..+.+|.+++++..
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~ 69 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEE 69 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccC
Confidence 68999999999999999999999999 7656777777776643
No 98
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.65 E-value=2.9e-18 Score=143.51 Aligned_cols=61 Identities=15% Similarity=0.087 Sum_probs=54.5
Q ss_pred cceecceE-EEeCCcEEEEECCCCCCHHHHHHH--HhcCccCCcceEEECCeec--------ceeeeeecCc
Q psy10767 4 VSASSLNT-VIFGVTAYGLLGPSGCGKTTLLSC--IVNRLRLDHGSISLSARTV--------RDIGYMPQVG 64 (149)
Q Consensus 4 ~~~~~i~~-~~~~g~~~~iiG~nGaGKSTLl~~--i~g~~~~~~G~i~~~g~~~--------~~i~~~~q~~ 64 (149)
++|++++| .+++|++++|+||||||||||+++ ++|+.+|++|+|+++|.+. +.++|++|+.
T Consensus 26 ~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~~g~~~q~~ 97 (525)
T 1tf7_A 26 EGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKL 97 (525)
T ss_dssp TTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGTCCHHHH
T ss_pred hhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCChHHh
Confidence 47999999 999999999999999999999999 7899999999999998653 3578888864
No 99
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.65 E-value=7.3e-18 Score=123.91 Aligned_cols=138 Identities=13% Similarity=0.074 Sum_probs=70.2
Q ss_pred ceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCc-----cCCcceEEECCee-c-ceeeeeecCcccccCccccc---
Q psy10767 5 SASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRL-----RLDHGSISLSART-V-RDIGYMPQVGLMRSGALLAE--- 74 (149)
Q Consensus 5 ~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~-----~~~~G~i~~~g~~-~-~~i~~~~q~~~~~~~~~~~~--- 74 (149)
.+++ |.+.+|..++|+|+||||||||++.|+|.. .|+.|++.+.+.- + ..+.++ +.+.+.......+
T Consensus 17 ~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~-Dt~G~~~~~~~~~~~~ 93 (210)
T 1pui_A 17 DIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLV-DLPGYGYAEVPEEMKR 93 (210)
T ss_dssp SGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEE-ECCCCC------CCHH
T ss_pred CHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEE-ECcCCcccccCHHHHH
Confidence 4555 788999999999999999999999999998 7888876542210 0 011111 0000000000000
Q ss_pred ---CChhHHHh---h-------ccc----CchHHHHHHHhhhhHH----HHhhcCCCCCChhHHHH-HHHHHHHhcCCCE
Q psy10767 75 ---DSPSYLLE---Y-------YNC----STLEDVFLYLCEQDQI----LFSLVGSESAFGGQQRR-VSFAVSLIHDPKI 132 (149)
Q Consensus 75 ---~~~~~~~~---~-------~~~----~~~~~~~~~~~~~~~~----~~~~~~~~~~sgGqkqr-v~iaral~~~p~i 132 (149)
........ . +.. .........+...... ...... .+|+||+|| +..+++++.+|++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D--~~s~~~~~~~~~~~~~~~~~~~~ 171 (210)
T 1pui_A 94 KWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKAD--KLASGARKAQLNMVREAVLAFNG 171 (210)
T ss_dssp HHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGG--GSCHHHHHHHHHHHHHHHGGGCS
T ss_pred HHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEeccc--CCCchhHHHHHHHHHHHHHhcCC
Confidence 00000000 0 000 0011111111111111 011112 248999999 8999999999999
Q ss_pred EEEcCCCCCCCcCCC
Q psy10767 133 LILDEPTVGLDPVLS 147 (149)
Q Consensus 133 lllDEPt~gLD~~~~ 147 (149)
+++|||||++|+...
T Consensus 172 ~~~~~~~Sal~~~~~ 186 (210)
T 1pui_A 172 DVQVETFSSLKKQGV 186 (210)
T ss_dssp CEEEEECBTTTTBSH
T ss_pred CCceEEEeecCCCCH
Confidence 999999999998754
No 100
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.64 E-value=3.2e-18 Score=145.72 Aligned_cols=104 Identities=12% Similarity=0.192 Sum_probs=57.7
Q ss_pred EEEECCCCCCHHHHHHHHhcCccC-CcceEEECCeec------------ceeeeeecCcccccCcccccCChhHHHhhcc
Q psy10767 19 YGLLGPSGCGKTTLLSCIVNRLRL-DHGSISLSARTV------------RDIGYMPQVGLMRSGALLAEDSPSYLLEYYN 85 (149)
Q Consensus 19 ~~iiG~nGaGKSTLl~~i~g~~~~-~~G~i~~~g~~~------------~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~ 85 (149)
+||+||||||||||+++|+|+..| ++|+|+++|.++ ..++|++|+.. +....++.++...
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~-----l~~~~tv~e~i~~-- 120 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIE-----ISDASEVEKEINK-- 120 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEEEECSSSSCCEEEESCC---CC-----CCCHHHHHTTHHH--
T ss_pred EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEEecCCccccceeEEeeeccccc-----CCCHHHHHHHHHH--
Confidence 999999999999999999999988 799999999763 24778887632 2222222211110
Q ss_pred cCchHHHHHHHhhhhHHHHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCC------CCCCCcCCC
Q psy10767 86 CSTLEDVFLYLCEQDQILFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEP------TVGLDPVLS 147 (149)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEP------t~gLD~~~~ 147 (149)
.. .. .. ... .+..++++.++.+....|+++++||| |++||+..+
T Consensus 121 ------~~----~~---~~---~~~--~~~s~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~ 170 (608)
T 3szr_A 121 ------AQ----NA---IA---GEG--MGISHELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIG 170 (608)
T ss_dssp ------HH----HH---HH---CSS--SCCCSCCEEEEEEESSSCCEEEEECCC------CCSSCSHH
T ss_pred ------HH----HH---hc---CCc--cccchHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHH
Confidence 00 00 00 000 11222334444455568999999999 999998753
No 101
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.64 E-value=1.6e-17 Score=135.95 Aligned_cols=123 Identities=17% Similarity=0.151 Sum_probs=64.8
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcc--eEEECCe---ecceeeeeecCcccccCcccccCChh
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHG--SISLSAR---TVRDIGYMPQVGLMRSGALLAEDSPS 78 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G--~i~~~g~---~~~~i~~~~q~~~~~~~~~~~~~~~~ 78 (149)
.+++++||+| +|+|+||||||||+++|+|...++.| .+.++.. ....+++++|....... +...+++.
T Consensus 25 ~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~-Ltv~Dt~g 97 (418)
T 2qag_C 25 SVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLL-LTIVDTPG 97 (418)
T ss_dssp TCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEE-EEEEECC-
T ss_pred EEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccc-eeeeechh
Confidence 4678888887 99999999999999999999875544 2222111 11347777776432211 11222221
Q ss_pred HHHhhcccCchHHHHHHHhhhhHHHHhhcCCCCCChhHHHHHHHHHHHhcCCC---EEEEcCCC-CCCCcC
Q psy10767 79 YLLEYYNCSTLEDVFLYLCEQDQILFSLVGSESAFGGQQRRVSFAVSLIHDPK---ILILDEPT-VGLDPV 145 (149)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgGqkqrv~iaral~~~p~---illlDEPt-~gLD~~ 145 (149)
....... ......+.+.. .. .++.+++||++|||+++.+|+ ++++|||| .+||+.
T Consensus 98 ~~~~~~~----~~~~~~i~~~i---~~-----~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~ 156 (418)
T 2qag_C 98 FGDAVDN----SNCWQPVIDYI---DS-----KFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPL 156 (418)
T ss_dssp --------------CHHHHHHH---HH-----HHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHH
T ss_pred hhhhccc----hhhHHHHHHHH---HH-----HHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHH
Confidence 1110000 00000111111 11 013567889999999999999 99999999 699874
No 102
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.63 E-value=7.3e-17 Score=129.17 Aligned_cols=48 Identities=27% Similarity=0.258 Sum_probs=45.5
Q ss_pred ceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCee
Q psy10767 5 SASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSART 53 (149)
Q Consensus 5 ~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~ 53 (149)
+++++ |++.+|++++|+||||||||||+++|+|+.+|+.|.|.+.|++
T Consensus 61 ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~ 108 (347)
T 2obl_A 61 AIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGER 108 (347)
T ss_dssp HHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCC
T ss_pred EEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEeccc
Confidence 68899 9999999999999999999999999999999999999998865
No 103
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.63 E-value=7e-17 Score=129.69 Aligned_cols=38 Identities=24% Similarity=0.245 Sum_probs=33.2
Q ss_pred EEeCCcEEEEECCCCCCHHHHHHHHhcCccCC-cceEEE
Q psy10767 12 VIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLD-HGSISL 49 (149)
Q Consensus 12 ~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~-~G~i~~ 49 (149)
...+|++++|+||||||||||+++|+|+++|+ +|.|..
T Consensus 119 ~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t 157 (356)
T 3jvv_A 119 SDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILT 157 (356)
T ss_dssp HHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEE
T ss_pred HhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEE
Confidence 56788899999999999999999999999887 455543
No 104
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.63 E-value=2.1e-18 Score=138.37 Aligned_cols=45 Identities=13% Similarity=0.131 Sum_probs=41.0
Q ss_pred eecceEEEeC--CcEEEEECCCCCCHHHHHHHHhcCccCCc----ceEEEC
Q psy10767 6 ASSLNTVIFG--VTAYGLLGPSGCGKTTLLSCIVNRLRLDH----GSISLS 50 (149)
Q Consensus 6 ~~~i~~~~~~--g~~~~iiG~nGaGKSTLl~~i~g~~~~~~----G~i~~~ 50 (149)
.+.|++++.+ |+.++|+||||||||||+++|+|+++|++ |+++++
T Consensus 158 ~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~ 208 (365)
T 1lw7_A 158 WKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVF 208 (365)
T ss_dssp GGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHH
T ss_pred hhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHH
Confidence 4578999999 99999999999999999999999999998 877763
No 105
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.61 E-value=4.9e-17 Score=116.92 Aligned_cols=60 Identities=22% Similarity=0.154 Sum_probs=51.1
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeecce----eeeeecCc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRD----IGYMPQVG 64 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~~~----i~~~~q~~ 64 (149)
.+++++||++++|++++|+||||||||||+|+|+|++ |++|+|.++|.++.+ -.+++|+.
T Consensus 21 ~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~~~~~~~~~q~~ 84 (158)
T 1htw_A 21 FAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEEYNIAGKMIYHF 84 (158)
T ss_dssp HHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEEEEETTEEEEEE
T ss_pred HHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeeeccCCCcceecc
Confidence 3678999999999999999999999999999999999 999999999876521 12566653
No 106
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.60 E-value=4.4e-16 Score=136.09 Aligned_cols=108 Identities=18% Similarity=0.178 Sum_probs=65.2
Q ss_pred ccceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccC-CcceEEECCeecceeeeeecCcccccCcccccCChhHHH
Q psy10767 3 DVSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRL-DHGSISLSARTVRDIGYMPQVGLMRSGALLAEDSPSYLL 81 (149)
Q Consensus 3 ~~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~-~~G~i~~~g~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~ 81 (149)
.++++|++|+ ++|++++|+||||||||||+|+|+|+..+ ..|.. +... ...+++++|. +......
T Consensus 595 ~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~~-vpa~-~~~i~~~~~i--------~~~~~~~--- 660 (800)
T 1wb9_A 595 PFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGSY-VPAQ-KVEIGPIDRI--------FTRVGAA--- 660 (800)
T ss_dssp CCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCC-BSSS-EEEECCCCEE--------EEEEC-----
T ss_pred ceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCcc-cchh-cccceeHHHH--------HhhCCHH---
Confidence 3688999999 99999999999999999999999997532 22311 0000 0123333220 1111110
Q ss_pred hhcccCchHHHHHHHhhhhHHHHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCC
Q psy10767 82 EYYNCSTLEDVFLYLCEQDQILFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVL 146 (149)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~ 146 (149)
+... . +...+|.++++ ++.+...+.+|+++|||||++|+|+..
T Consensus 661 --------d~l~-----------~--~~stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~d 703 (800)
T 1wb9_A 661 --------DDLA-----------S--GRSTFMVEMTE-TANILHNATEYSLVLMDEIGRGTSTYD 703 (800)
T ss_dssp ------------------------------CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSSH
T ss_pred --------HHHH-----------h--hhhhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCChhH
Confidence 0000 0 00112456654 455555689999999999999999853
No 107
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.59 E-value=1.3e-15 Score=117.63 Aligned_cols=120 Identities=13% Similarity=0.019 Sum_probs=67.8
Q ss_pred EEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec---ceeeeeecCcccccCcccccCChhHHHhhcccCc
Q psy10767 12 VIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV---RDIGYMPQVGLMRSGALLAEDSPSYLLEYYNCST 88 (149)
Q Consensus 12 ~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~---~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (149)
.+.+|++++|+||||||||||++.+++... .|++.+ |... ..+.|+..+... . .............
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~~~-g~~~~~~~~v~~~~~e~~~-------~-~~~~r~~~~g~~~ 94 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPDLL-EVGELPTGPVIYLPAEDPP-------T-AIHHRLHALGAHL 94 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCCTT-CCCCCCCCCEEEEESSSCH-------H-HHHHHHHHHHTTS
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCCcC-CCccCCCccEEEEECCCCH-------H-HHHHHHHHHHhhc
Confidence 478999999999999999999999998664 465533 4322 234454443110 0 0000011111111
Q ss_pred hHHHHHHHhhhhHHHH-hhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCC--CCCcC
Q psy10767 89 LEDVFLYLCEQDQILF-SLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTV--GLDPV 145 (149)
Q Consensus 89 ~~~~~~~~~~~~~~~~-~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~--gLD~~ 145 (149)
.......+.+...+.. .......+|+||+|++ ++++.+|+++++||||+ ++|+.
T Consensus 95 ~~~~~~~~~~~l~l~~~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~ 151 (279)
T 1nlf_A 95 SAEERQAVADGLLIQPLIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEEN 151 (279)
T ss_dssp CHHHHHHHHHHEEECCCTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTT
T ss_pred ChhhhhhccCceEEeecCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcC
Confidence 1111111111111100 0112233589997765 68889999999999999 88874
No 108
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.59 E-value=5.6e-16 Score=124.43 Aligned_cols=91 Identities=18% Similarity=0.191 Sum_probs=68.0
Q ss_pred eecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec-------ceeeeee-cCcccccCcccccCCh
Q psy10767 6 ASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV-------RDIGYMP-QVGLMRSGALLAEDSP 77 (149)
Q Consensus 6 ~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~-------~~i~~~~-q~~~~~~~~~~~~~~~ 77 (149)
++++||.+++|++++|+||||||||||+++|+|+++|++|.|.++|..- +.+++++ |+.
T Consensus 165 ~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~------------- 231 (361)
T 2gza_A 165 MSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFLPDHPNHVHLFYPSEA------------- 231 (361)
T ss_dssp HHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCCTTCSSEEEEECC----------------
T ss_pred HHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCccccCCEEEEeecCcc-------------
Confidence 3889999999999999999999999999999999999999999986310 0111221 110
Q ss_pred hHHHhhcccCchHHHHHHHhhhhHHHHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCC
Q psy10767 78 SYLLEYYNCSTLEDVFLYLCEQDQILFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTV 140 (149)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~ 140 (149)
. ...+++..++-.|++++..+|+.+++|||..
T Consensus 232 ---------------~----------------~~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~ 263 (361)
T 2gza_A 232 ---------------K----------------EEENAPVTAATLLRSCLRMKPTRILLAELRG 263 (361)
T ss_dssp --------------------------------------CCHHHHHHHHTTSCCSEEEESCCCS
T ss_pred ---------------c----------------cccccccCHHHHHHHHHhcCCCEEEEcCchH
Confidence 0 0002455678889999999999999999975
No 109
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.58 E-value=3.1e-16 Score=116.38 Aligned_cols=117 Identities=13% Similarity=-0.022 Sum_probs=72.8
Q ss_pred ceecceE-EEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeecc---------eeeeeecCcccccCccccc
Q psy10767 5 SASSLNT-VIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVR---------DIGYMPQVGLMRSGALLAE 74 (149)
Q Consensus 5 ~~~~i~~-~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~~---------~i~~~~q~~~~~~~~~~~~ 74 (149)
.|+++.. .+.+|++++|+||||||||||+++|++...++.|.+.+.+.+.. .+++.++.. ..
T Consensus 11 ~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~ 82 (235)
T 2w0m_A 11 DFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEESRDSIIRQAKQFNWDFEEY--------IE 82 (235)
T ss_dssp HHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSCHHHHHHHHHHTTCCCGGG--------BT
T ss_pred HHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccCHHHHHHHHHHhcchHHHH--------hh
Confidence 5777877 89999999999999999999999999988877777776442210 011111100 00
Q ss_pred CChhHHHhhcccCchHHHHHHHhhhhHHHHhhcCCCCCChhHHHHHHHHHHHhcCCC--EEEEcCCCCCC--CcC
Q psy10767 75 DSPSYLLEYYNCSTLEDVFLYLCEQDQILFSLVGSESAFGGQQRRVSFAVSLIHDPK--ILILDEPTVGL--DPV 145 (149)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgGqkqrv~iaral~~~p~--illlDEPt~gL--D~~ 145 (149)
...... ....... . .... ....|.++.++...+.+...+|+ ++++||||+.+ |+.
T Consensus 83 ----~~~~~~--~~~~~~~-------~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~ 141 (235)
T 2w0m_A 83 ----KKLIII--DALMKEK-------E--DQWS-LVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPA 141 (235)
T ss_dssp ----TTEEEE--ECCC-------------CTTB-CSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGG
T ss_pred ----CCEEEE--ecccccc-------C--ceee-ecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHH
Confidence 000000 0000000 0 0000 11226788888888888788999 99999999887 764
No 110
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.58 E-value=3.2e-18 Score=124.62 Aligned_cols=103 Identities=15% Similarity=0.103 Sum_probs=60.3
Q ss_pred cEEEEECCCCCCHHHHHHHHhcCccCC---cceEEECCeecc-------------eee----eeecCcccccCcccccCC
Q psy10767 17 TAYGLLGPSGCGKTTLLSCIVNRLRLD---HGSISLSARTVR-------------DIG----YMPQVGLMRSGALLAEDS 76 (149)
Q Consensus 17 ~~~~iiG~nGaGKSTLl~~i~g~~~~~---~G~i~~~g~~~~-------------~i~----~~~q~~~~~~~~~~~~~~ 76 (149)
++++|+|+||||||||+++|+|+++|+ .|+|.+++.++. .++ +++|+...+ ..+ .
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~----i~~-~ 77 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF----IRR-V 77 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE----EEE-C
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE----Eec-C
Confidence 579999999999999999999999998 899999886521 244 455543221 000 0
Q ss_pred hhHHHhhcccCchHHHHHHHhhhhHHHHhhcCCCCCChhHHHHHHHHHHHhcCCCEE
Q psy10767 77 PSYLLEYYNCSTLEDVFLYLCEQDQILFSLVGSESAFGGQQRRVSFAVSLIHDPKIL 133 (149)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgGqkqrv~iaral~~~p~il 133 (149)
..+ . .....+.+...+. + ....+.. .+|+||+||++||||++.+|++.
T Consensus 78 ~~~-~----~a~l~~~i~~~l~--g-~dt~i~E-glSgGq~qri~lARall~~p~i~ 125 (171)
T 2f1r_A 78 SEE-E----GNDLDWIYERYLS--D-YDLVITE-GFSKAGKDRIVVVKKPEEVEHFR 125 (171)
T ss_dssp CHH-H----HTCHHHHHHHHTT--T-CSEEEEE-SCGGGCCCEEEECSSGGGGGGGC
T ss_pred Chh-h----hhCHHHHHHhhCC--C-CCEEEEC-CcCCCCCcEEEEEecccCCCccC
Confidence 000 0 0011111111000 1 1111111 26999999999999999999873
No 111
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.58 E-value=1.2e-17 Score=126.79 Aligned_cols=38 Identities=26% Similarity=0.327 Sum_probs=34.7
Q ss_pred CCcEEEEECCCCCCHHHHHHHHh---cCccCCcceEEECCe
Q psy10767 15 GVTAYGLLGPSGCGKTTLLSCIV---NRLRLDHGSISLSAR 52 (149)
Q Consensus 15 ~g~~~~iiG~nGaGKSTLl~~i~---g~~~~~~G~i~~~g~ 52 (149)
++++++|+||||||||||+++|+ |+..++.|+|.+++.
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~ 66 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENI 66 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHH
Confidence 47899999999999999999999 999999999988653
No 112
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.57 E-value=8.5e-16 Score=123.92 Aligned_cols=46 Identities=17% Similarity=0.216 Sum_probs=39.6
Q ss_pred ceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCC-cceEEECCe
Q psy10767 5 SASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLD-HGSISLSAR 52 (149)
Q Consensus 5 ~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~-~G~i~~~g~ 52 (149)
.+++++ +.+|++++|+||||||||||+++|+|+++|+ +|+|.+.+.
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~ 173 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIED 173 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEES
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecc
Confidence 345554 7899999999999999999999999999987 899977553
No 113
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.56 E-value=3.9e-17 Score=118.83 Aligned_cols=41 Identities=20% Similarity=0.250 Sum_probs=36.6
Q ss_pred EEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec
Q psy10767 12 VIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV 54 (149)
Q Consensus 12 ~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~ 54 (149)
.+++|++++|+||||||||||+++|+|. ++.|.|.+++.++
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~ 45 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDL 45 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccch
Confidence 4789999999999999999999999998 7789999988654
No 114
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.56 E-value=7.9e-16 Score=123.63 Aligned_cols=116 Identities=13% Similarity=0.131 Sum_probs=65.4
Q ss_pred ceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCcc-CCcceEEEC-Ceec-----ceeeeeecCcccccCcccccCCh
Q psy10767 5 SASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLR-LDHGSISLS-ARTV-----RDIGYMPQVGLMRSGALLAEDSP 77 (149)
Q Consensus 5 ~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~-~~~G~i~~~-g~~~-----~~i~~~~q~~~~~~~~~~~~~~~ 77 (149)
.++++++. .+|++++|+||||||||||+|+|+|... |.+|+|.++ |... ..+++++|... ++...++
T Consensus 205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~~v~q~~~-----l~dtpgv 278 (358)
T 2rcn_A 205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFPHGGD-----VIDSPGV 278 (358)
T ss_dssp THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEEEECTTSCE-----EEECHHH
T ss_pred CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEEEEECCCCE-----ecCcccH
Confidence 35566654 4799999999999999999999999999 999999986 5321 45889988732 2222122
Q ss_pred hHHHhhcccCc--hHHHHHHHhhhhHH-HHhhcCCCCCChhHHHHHHHHHHHhc
Q psy10767 78 SYLLEYYNCST--LEDVFLYLCEQDQI-LFSLVGSESAFGGQQRRVSFAVSLIH 128 (149)
Q Consensus 78 ~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~sgGqkqrv~iaral~~ 128 (149)
.++ ....... ....+.++.+..+. .........+| ||+||++||++++.
T Consensus 279 ~e~-~l~~l~~~e~~~~~~e~l~~~gl~~f~~~~~~~lS-G~~~r~ala~gli~ 330 (358)
T 2rcn_A 279 REF-GLWHLEPEQITQGFVEFHDYLGHCKYRDCKHDADP-GCAIREAVENGAIA 330 (358)
T ss_dssp HTC-CCCCCCHHHHHHTSGGGGGGTTCSSSTTCCSSSCT-TCHHHHHHHHTSSC
T ss_pred HHh-hhcCCCHHHHHHHHHHHHHHcCCchhcCCCcccCC-HHHHHHHHHhcCCC
Confidence 211 0111111 01112222222222 11122233458 99999999998764
No 115
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.53 E-value=4.3e-17 Score=121.02 Aligned_cols=39 Identities=23% Similarity=0.315 Sum_probs=32.6
Q ss_pred EeCCcEEEEECCCCCCHHHHHHHHhcCccCC---cceEEECC
Q psy10767 13 IFGVTAYGLLGPSGCGKTTLLSCIVNRLRLD---HGSISLSA 51 (149)
Q Consensus 13 ~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~---~G~i~~~g 51 (149)
.++|++++|+||||||||||+++|+|+++|+ .|.|.+++
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~ 60 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDG 60 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGG
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCC
Confidence 5789999999999999999999999999864 44444444
No 116
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.52 E-value=2.7e-16 Score=130.82 Aligned_cols=48 Identities=23% Similarity=0.245 Sum_probs=44.6
Q ss_pred eecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCee
Q psy10767 6 ASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSART 53 (149)
Q Consensus 6 ~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~ 53 (149)
.+++||++.+|++++|+|+||||||||+++|+|++++++|+|.+.+.+
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D 330 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGD 330 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCC
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCc
Confidence 468999999999999999999999999999999999999999997644
No 117
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.51 E-value=1.6e-16 Score=130.01 Aligned_cols=41 Identities=22% Similarity=0.230 Sum_probs=37.7
Q ss_pred eCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec
Q psy10767 14 FGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV 54 (149)
Q Consensus 14 ~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~ 54 (149)
.+|++++|+||||||||||+++|+|++.|++|+|.+.+.++
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~i 205 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPI 205 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSC
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccc
Confidence 78999999999999999999999999999999999876543
No 118
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.51 E-value=1.6e-16 Score=124.31 Aligned_cols=121 Identities=18% Similarity=0.106 Sum_probs=71.1
Q ss_pred EeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeecceeeeeecCcccccCcccccCChhHHHhh-------c-
Q psy10767 13 IFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAEDSPSYLLEY-------Y- 84 (149)
Q Consensus 13 ~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~-------~- 84 (149)
-.++.++||+|++|||||||.+.|.+++.+. | ...+.+.+|+|+..++... ...+..+ .
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g------~~~~~~~iv~~D~f~~~~~------~~~~l~~~~~~~~l~~ 94 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLMEK-Y------GGEKSIGYASIDDFYLTHE------DQLKLNEQFKNNKLLQ 94 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHHHH-H------GGGSCEEEEEGGGGBCCHH------HHHHHHHHTTTCGGGS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhhhc-C------CCCceEEEeccccccCChH------HHHHHhccccccchhh
Confidence 3568899999999999999999999999763 2 1123344558876543221 1111111 0
Q ss_pred --ccC--chHHHHHHHhhhhHHH-H--------hhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCC
Q psy10767 85 --NCS--TLEDVFLYLCEQDQIL-F--------SLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVL 146 (149)
Q Consensus 85 --~~~--~~~~~~~~~~~~~~~~-~--------~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~ 146 (149)
+.. .........+...... . .......+||||+||+++|++...+|+|+|+||||+++|+..
T Consensus 95 ~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 95 GRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKLPVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp SSCSTTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEESSCSEEEEEESSTTCCCCC
T ss_pred hccCcchhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEcCCCEEEEeCccccCCccc
Confidence 001 0111121221111100 0 011123458999999999733333999999999999999864
No 119
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=99.49 E-value=6.3e-15 Score=122.39 Aligned_cols=49 Identities=20% Similarity=0.133 Sum_probs=46.7
Q ss_pred ceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec
Q psy10767 5 SASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV 54 (149)
Q Consensus 5 ~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~ 54 (149)
+++++||++++ ++++|+||||||||||+++|+|+++|++|+|.++|.++
T Consensus 19 ~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~ 67 (483)
T 3euj_A 19 GFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTE 67 (483)
T ss_dssp TEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTS
T ss_pred cccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEc
Confidence 68999999999 99999999999999999999999999999999998765
No 120
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.48 E-value=1.2e-14 Score=119.00 Aligned_cols=58 Identities=19% Similarity=0.177 Sum_probs=41.3
Q ss_pred eecceEEEeCCcE--EEEECCCCCCHHHHHHHHhcCccCCcceEEE---CCeecceeeeeecCcc
Q psy10767 6 ASSLNTVIFGVTA--YGLLGPSGCGKTTLLSCIVNRLRLDHGSISL---SARTVRDIGYMPQVGL 65 (149)
Q Consensus 6 ~~~i~~~~~~g~~--~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~---~g~~~~~i~~~~q~~~ 65 (149)
++++||++++|++ ++|+||||||||||+|+|+|+.- .|.-.. .+...+.++|++|+..
T Consensus 30 L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l--~g~~~~~~~~~~~~~~i~~v~Q~~~ 92 (427)
T 2qag_B 30 DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF--EGEPATHTQPGVQLQSNTYDLQESN 92 (427)
T ss_dssp HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC---------CCSSCEEEEEEEEEEC--
T ss_pred cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc--cCCcCCCCCccceEeeEEEEeecCc
Confidence 7899999999999 99999999999999999999851 121111 1122246899999753
No 121
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.47 E-value=7.7e-15 Score=115.17 Aligned_cols=55 Identities=22% Similarity=0.230 Sum_probs=42.2
Q ss_pred EEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEE---CCeec---------ceeeeeecCcccc
Q psy10767 12 VIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISL---SARTV---------RDIGYMPQVGLMR 67 (149)
Q Consensus 12 ~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~---~g~~~---------~~i~~~~q~~~~~ 67 (149)
.+..|++++|+||||||||||+|+|+ +.+|++|+|.+ +|++. +.+++++|.+.+.
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~ 227 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFS 227 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEEETTTEEEESSCCCS
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcC
Confidence 44578999999999999999999999 99999999999 77543 2479999987543
No 122
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.47 E-value=7.1e-14 Score=103.13 Aligned_cols=110 Identities=15% Similarity=0.053 Sum_probs=64.3
Q ss_pred ceecceE-EEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeecceeeeeecCcccccCcccccCChhHHHhh
Q psy10767 5 SASSLNT-VIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAEDSPSYLLEY 83 (149)
Q Consensus 5 ~~~~i~~-~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~ 83 (149)
.|+.+.. .+++|++++|+||||||||||++.+++ .+..+.++++. +. .... .........
T Consensus 8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~-----------~~-----~~~~-~~~~~~~~~ 68 (220)
T 2cvh_A 8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDT-----------EG-----GFSP-ERLVQMAET 68 (220)
T ss_dssp HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEES-----------SC-----CCCH-HHHHHHHHT
T ss_pred HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEEC-----------CC-----CCCH-HHHHHHHHh
Confidence 3455544 688999999999999999999999999 33333333322 10 0000 001111111
Q ss_pred cccCchHHHHHHHhhhhHHHHhhcCCCCCChh--HHHHHHHHHHHhcC-CCEEEEcCCCCCCCcC
Q psy10767 84 YNCSTLEDVFLYLCEQDQILFSLVGSESAFGG--QQRRVSFAVSLIHD-PKILILDEPTVGLDPV 145 (149)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgG--qkqrv~iaral~~~-p~illlDEPt~gLD~~ 145 (149)
.... .++.. + ....... +.+ ++|+++.+++++.+ |+++++||||+.+|+.
T Consensus 69 ~~~~-~~~~~----~-----~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~ 121 (220)
T 2cvh_A 69 RGLN-PEEAL----S-----RFILFTP--SDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAE 121 (220)
T ss_dssp TTCC-HHHHH----H-----HEEEECC--TTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGG
T ss_pred cCCC-hHHHh----h-----cEEEEec--CCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhc
Confidence 1111 11100 0 0011111 333 46788899999986 9999999999999974
No 123
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.45 E-value=2.7e-14 Score=101.56 Aligned_cols=37 Identities=35% Similarity=0.419 Sum_probs=33.4
Q ss_pred CCChhHHHHHHHH------HHHhcCCCEEEEcCCCCCCCcCCC
Q psy10767 111 SAFGGQQRRVSFA------VSLIHDPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 111 ~~sgGqkqrv~ia------ral~~~p~illlDEPt~gLD~~~~ 147 (149)
.+|||||||++|| ||++.+|+++||||||++||+..+
T Consensus 57 ~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~ 99 (148)
T 1f2t_B 57 FLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERR 99 (148)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHH
T ss_pred HCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHH
Confidence 4599999999876 899999999999999999998754
No 124
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.45 E-value=1.4e-14 Score=118.54 Aligned_cols=122 Identities=13% Similarity=0.139 Sum_probs=69.4
Q ss_pred eecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCc-----------cCCcceEEECCeecceeeeeecCcccccCccccc
Q psy10767 6 ASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRL-----------RLDHGSISLSARTVRDIGYMPQVGLMRSGALLAE 74 (149)
Q Consensus 6 ~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~-----------~~~~G~i~~~g~~~~~i~~~~q~~~~~~~~~~~~ 74 (149)
-++++|+++.++.++|+|+||||||||+++|+|.. .|+.|.|.+++. ..+ .+.+.+ .+..
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~--~~~-~l~Dtp-----Gli~- 217 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEE--ERF-TLADIP-----GIIE- 217 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSS--CEE-EEEECC-----CCCC-
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCc--ceE-EEEecc-----cccc-
Confidence 46899999999999999999999999999999984 233343433320 000 111111 0000
Q ss_pred CChhHHHhhcccCch-HHHH---HHHhhhhHHHHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCC
Q psy10767 75 DSPSYLLEYYNCSTL-EDVF---LYLCEQDQILFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVL 146 (149)
Q Consensus 75 ~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD~~~ 146 (149)
.... ....... .... ..++..++....... .+|+|++|+++++++|+.+|.++++ |.+|+..
T Consensus 218 -~a~~---~~~L~~~fl~~~era~~lL~vvDls~~~~~--~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~ 283 (416)
T 1udx_A 218 -GASE---GKGLGLEFLRHIARTRVLLYVLDAADEPLK--TLETLRKEVGAYDPALLRRPSLVAL----NKVDLLE 283 (416)
T ss_dssp -CGGG---SCCSCHHHHHHHTSSSEEEEEEETTSCHHH--HHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSC
T ss_pred -chhh---hhhhhHHHHHHHHHHHhhhEEeCCccCCHH--HHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhh
Confidence 0000 0000000 0000 000111111011111 2379999999999999999999999 8999864
No 125
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.44 E-value=4.8e-17 Score=126.11 Aligned_cols=121 Identities=21% Similarity=0.223 Sum_probs=73.9
Q ss_pred ceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec---------ceeeeeecCcccccCcccccC
Q psy10767 5 SASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV---------RDIGYMPQVGLMRSGALLAED 75 (149)
Q Consensus 5 ~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~---------~~i~~~~q~~~~~~~~~~~~~ 75 (149)
.++++++.+++| ++|+||||||||||+++|+|...+ +.|.++|.++ +.++++||......+.+...+
T Consensus 35 ~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~D 110 (274)
T 2x8a_A 35 QFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFD 110 (274)
T ss_dssp HHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEEEE
T ss_pred HHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEeee
Confidence 567889999999 999999999999999999998876 6899887654 235666664311111111111
Q ss_pred ChhHHHhhcccCchHHHHHHHhhhhHHHHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCC
Q psy10767 76 SPSYLLEYYNCSTLEDVFLYLCEQDQILFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTV 140 (149)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~ 140 (149)
.+.. ......... ... ...........+ ||||+||+.|++|+.++|++| |||+.
T Consensus 111 eid~---~~~~r~~~~-~~~---~~~~~~~~l~~L--sgg~~~~~~i~ia~tn~p~~L--D~al~ 164 (274)
T 2x8a_A 111 EVDA---LCPRRSDRE-TGA---SVRVVNQLLTEM--DGLEARQQVFIMAATNRPDII--DPAIL 164 (274)
T ss_dssp TCTT---TCC-------------CTTHHHHHHHHH--HTCCSTTCEEEEEEESCGGGS--CHHHH
T ss_pred hhhh---hhcccCCCc-chH---HHHHHHHHHHhh--hcccccCCEEEEeecCChhhC--CHhhc
Confidence 1110 000000000 000 001122222223 799999999999999999975 88864
No 126
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=99.44 E-value=3.3e-14 Score=112.05 Aligned_cols=99 Identities=18% Similarity=0.165 Sum_probs=69.2
Q ss_pred cceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeecceeeeeecCcccccCcccccCChhHHHhhcccC
Q psy10767 8 SLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAEDSPSYLLEYYNCS 87 (149)
Q Consensus 8 ~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (149)
.+++...++++++|+|+|||||||+++.|++.+.++.|+|.+.+.+..+.+.+ +.
T Consensus 96 ~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~------------------eq------- 150 (306)
T 1vma_A 96 KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAI------------------EQ------- 150 (306)
T ss_dssp CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHH------------------HH-------
T ss_pred CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHH------------------HH-------
Confidence 45666788999999999999999999999999998888888765442111000 00
Q ss_pred chHHHHHHHhhhhHHHHhhcCCCCCChhHHHHH---HHHHHHhcCCCEEEEcCCCC
Q psy10767 88 TLEDVFLYLCEQDQILFSLVGSESAFGGQQRRV---SFAVSLIHDPKILILDEPTV 140 (149)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~sgGqkqrv---~iaral~~~p~illlDEPt~ 140 (149)
...+.+..++ ..... .|+|+.|++ +|++++..+|+++|+|||..
T Consensus 151 -----L~~~~~~~gl--~~~~~--~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 151 -----LKIWGERVGA--TVISH--SEGADPAAVAFDAVAHALARNKDVVIIDTAGR 197 (306)
T ss_dssp -----HHHHHHHHTC--EEECC--STTCCHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred -----HHHHHHHcCC--cEEec--CCccCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 0011111111 01122 268999999 89999999999999999964
No 127
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.41 E-value=1e-13 Score=110.21 Aligned_cols=42 Identities=24% Similarity=0.226 Sum_probs=39.3
Q ss_pred EeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec
Q psy10767 13 IFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV 54 (149)
Q Consensus 13 ~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~ 54 (149)
.++|++++|+|||||||||++++|+|+++|++|+|.+.+.++
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~ 167 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDT 167 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecc
Confidence 368999999999999999999999999999999999988775
No 128
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.40 E-value=2.7e-16 Score=124.17 Aligned_cols=39 Identities=33% Similarity=0.472 Sum_probs=35.3
Q ss_pred CcEEEEECCCCCCHHHHHHHHhcCc--------cCCcceEEECCeec
Q psy10767 16 VTAYGLLGPSGCGKTTLLSCIVNRL--------RLDHGSISLSARTV 54 (149)
Q Consensus 16 g~~~~iiG~nGaGKSTLl~~i~g~~--------~~~~G~i~~~g~~~ 54 (149)
-++++|+|+||||||||+|+|.|.. .|+.|+|.++|..+
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l 50 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLI 50 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEE
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHH
Confidence 3689999999999999999999987 78999999998765
No 129
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.36 E-value=1.4e-13 Score=121.66 Aligned_cols=37 Identities=35% Similarity=0.622 Sum_probs=34.0
Q ss_pred CCChhHHHHHHHHHHHhcCCC--EEEEcCCCCCCCcCCC
Q psy10767 111 SAFGGQQRRVSFAVSLIHDPK--ILILDEPTVGLDPVLS 147 (149)
Q Consensus 111 ~~sgGqkqrv~iaral~~~p~--illlDEPt~gLD~~~~ 147 (149)
.|||||||||+|||||+.+|+ +|||||||+|||+..+
T Consensus 464 ~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~ 502 (916)
T 3pih_A 464 TLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDT 502 (916)
T ss_dssp GCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGH
T ss_pred cCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHH
Confidence 459999999999999999887 9999999999999754
No 130
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=99.36 E-value=4.3e-13 Score=104.95 Aligned_cols=105 Identities=17% Similarity=0.094 Sum_probs=70.7
Q ss_pred ecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeecceeeeeecCcccccCcccccCChhHHHhhccc
Q psy10767 7 SSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAEDSPSYLLEYYNC 86 (149)
Q Consensus 7 ~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~ 86 (149)
++++|+ +|++++++|+|||||||+++.|++.+.+..|+|.+.+.+.+..+...| ..
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~q------------------l~---- 146 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQ------------------LR---- 146 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHH------------------HH----
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHH------------------HH----
Confidence 567787 899999999999999999999999999888999886654321100000 00
Q ss_pred CchHHHHHHHhhhhHHHHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCC-CCCCCc
Q psy10767 87 STLEDVFLYLCEQDQILFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEP-TVGLDP 144 (149)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEP-t~gLD~ 144 (149)
. ..+..++.. ..........+.+|.+|+++...+++++|+||| +.++|.
T Consensus 147 ----~----~~~~~~l~~-~~~~~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~ 196 (295)
T 1ls1_A 147 ----L----LGEKVGVPV-LEVMDGESPESIRRRVEEKARLEARDLILVDTAGRLQIDE 196 (295)
T ss_dssp ----H----HHHHHTCCE-EECCTTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCH
T ss_pred ----H----hcccCCeEE-EEcCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccH
Confidence 0 000001100 000001134566788999998899999999999 999985
No 131
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.35 E-value=7.1e-14 Score=111.27 Aligned_cols=62 Identities=13% Similarity=0.087 Sum_probs=54.1
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec-------------ceeeeeecCcc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV-------------RDIGYMPQVGL 65 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~-------------~~i~~~~q~~~ 65 (149)
.+++++||++.+|++++|+||||||||||+++|+|++.|++|+|.+.+.+. ..+++++|++.
T Consensus 43 ~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~ 117 (337)
T 2qm8_A 43 DLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRN 117 (337)
T ss_dssp HHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTT
T ss_pred HHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcc
Confidence 367899999999999999999999999999999999999999999987654 23678888643
No 132
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.34 E-value=2.1e-13 Score=102.56 Aligned_cols=63 Identities=21% Similarity=0.236 Sum_probs=42.3
Q ss_pred CccceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccC--CcceEEECCeec-----ceeeeeecCc
Q psy10767 2 ADVSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRL--DHGSISLSARTV-----RDIGYMPQVG 64 (149)
Q Consensus 2 ~~~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~--~~G~i~~~g~~~-----~~i~~~~q~~ 64 (149)
.+--+++-.-..++|++++|+||||||||||+++|+|+++| ..|.|.+.+.+. ..++|+||++
T Consensus 2 ~~~~~~~~~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~ 71 (219)
T 1s96_A 2 GSDKIHHHHHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNH 71 (219)
T ss_dssp -------------CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCH
T ss_pred CccccccccccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCH
Confidence 33345555667899999999999999999999999999986 688888877543 2477777763
No 133
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.31 E-value=1e-12 Score=93.13 Aligned_cols=30 Identities=27% Similarity=0.278 Sum_probs=27.8
Q ss_pred CCcEEEEECCCCCCHHHHHHHHhcCccCCcc
Q psy10767 15 GVTAYGLLGPSGCGKTTLLSCIVNRLRLDHG 45 (149)
Q Consensus 15 ~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G 45 (149)
+|+.++|+||||||||||+++|++...+ +|
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g 64 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALE-AG 64 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHT-TT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHh-cC
Confidence 8999999999999999999999999876 45
No 134
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.30 E-value=3.5e-16 Score=113.95 Aligned_cols=44 Identities=25% Similarity=0.371 Sum_probs=35.2
Q ss_pred CcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeecc---eeeeeec
Q psy10767 16 VTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVR---DIGYMPQ 62 (149)
Q Consensus 16 g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~~---~i~~~~q 62 (149)
|++++|+||||||||||+++|++ +.+|++++++.++. .+++++|
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~~~~~~~~~ 48 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHMVVGGYRPP 48 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTTCCTTCCCG
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhhhccccccC
Confidence 67899999999999999999997 66899999876542 2444554
No 135
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.30 E-value=1.3e-13 Score=99.55 Aligned_cols=36 Identities=22% Similarity=0.258 Sum_probs=31.9
Q ss_pred eEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcc
Q psy10767 10 NTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHG 45 (149)
Q Consensus 10 ~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G 45 (149)
+|.+.+|+.++|+||||||||||+++|++...|++|
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g 67 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKG 67 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSC
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcC
Confidence 466778999999999999999999999999876655
No 136
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.29 E-value=8.8e-13 Score=103.26 Aligned_cols=55 Identities=25% Similarity=0.269 Sum_probs=39.4
Q ss_pred EEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEE---CCeec---------ceeeeeecCcc
Q psy10767 11 TVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISL---SARTV---------RDIGYMPQVGL 65 (149)
Q Consensus 11 ~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~---~g~~~---------~~i~~~~q~~~ 65 (149)
|++..|++++|+||||||||||+|+|+|+.+|++|+|.+ +|+++ +.+++++|.+.
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~ 230 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPG 230 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCS
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcC
Confidence 456689999999999999999999999999999999999 77554 24789999864
No 137
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=99.28 E-value=1.6e-12 Score=95.04 Aligned_cols=52 Identities=23% Similarity=0.369 Sum_probs=38.4
Q ss_pred eEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec---------ceeeeeecCcc
Q psy10767 10 NTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV---------RDIGYMPQVGL 65 (149)
Q Consensus 10 ~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~---------~~i~~~~q~~~ 65 (149)
|+++.+|++++|+||||||||||+++|+|++ | .+.+.+... ..++|+||++.
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 61 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKAL-A---EIKISISHTTRPKRPGDQEGVDYFFIDET 61 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHS-S---SEEECCCEECSCCCTTCCBTTTBEECCHH
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhC-C---CeEEeceeccCCCchhHhcCceEEeccHH
Confidence 5778899999999999999999999999986 3 466655332 24778888653
No 138
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=99.28 E-value=9.1e-13 Score=98.82 Aligned_cols=36 Identities=25% Similarity=0.304 Sum_probs=22.9
Q ss_pred ceecceEEEeCCcEEEEECCCCCCHHHHHHHHh-cCc
Q psy10767 5 SASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIV-NRL 40 (149)
Q Consensus 5 ~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~-g~~ 40 (149)
..+++||++++|++++|+||||||||||+++|+ |++
T Consensus 16 ~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 16 TQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp ------CCEECCCEEEEECSCC----CHHHHHHC---
T ss_pred ccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 567999999999999999999999999999999 998
No 139
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.28 E-value=8.9e-12 Score=93.08 Aligned_cols=41 Identities=15% Similarity=0.199 Sum_probs=34.0
Q ss_pred EEeCCcEEEEECCCCCCHHHHHHHHhc--CccC-----CcceEEECCe
Q psy10767 12 VIFGVTAYGLLGPSGCGKTTLLSCIVN--RLRL-----DHGSISLSAR 52 (149)
Q Consensus 12 ~~~~g~~~~iiG~nGaGKSTLl~~i~g--~~~~-----~~G~i~~~g~ 52 (149)
-+++|++++|+||||||||||++.|++ ..++ ..|.+++++.
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~ 67 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTE 67 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESS
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECC
Confidence 478999999999999999999999999 5554 4566776653
No 140
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.27 E-value=2.4e-12 Score=93.69 Aligned_cols=37 Identities=19% Similarity=0.255 Sum_probs=32.4
Q ss_pred CCChhHHHHHHHHHHHhc----CCCEEEEcCCCCCCCcCCC
Q psy10767 111 SAFGGQQRRVSFAVSLIH----DPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 111 ~~sgGqkqrv~iaral~~----~p~illlDEPt~gLD~~~~ 147 (149)
.+|||||||++|||+++. +|+++||||||++||+..+
T Consensus 64 ~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~ 104 (173)
T 3kta_B 64 AMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANV 104 (173)
T ss_dssp GCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHH
T ss_pred cCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHH
Confidence 359999999999999974 4699999999999998643
No 141
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.24 E-value=7.4e-13 Score=103.94 Aligned_cols=40 Identities=18% Similarity=0.155 Sum_probs=37.3
Q ss_pred eCCcEEEEECCCCCCHHHHHHHHhcCcc--CCcceEEE---CCee
Q psy10767 14 FGVTAYGLLGPSGCGKTTLLSCIVNRLR--LDHGSISL---SART 53 (149)
Q Consensus 14 ~~g~~~~iiG~nGaGKSTLl~~i~g~~~--~~~G~i~~---~g~~ 53 (149)
.+|+++||+||||||||||+++|+|++. |++|+|.+ +|..
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~ 122 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFL 122 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGB
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCcc
Confidence 8999999999999999999999999988 99999999 7654
No 142
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=99.24 E-value=1.4e-13 Score=104.22 Aligned_cols=44 Identities=23% Similarity=0.215 Sum_probs=34.5
Q ss_pred eEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec
Q psy10767 10 NTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV 54 (149)
Q Consensus 10 ~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~ 54 (149)
++++.+ ++++|+||||||||||+++|+|++.|++|+|.++|.++
T Consensus 22 ~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~ 65 (227)
T 1qhl_A 22 TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTE 65 (227)
T ss_dssp EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC-------
T ss_pred EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEc
Confidence 666766 89999999999999999999999999999999987554
No 143
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.23 E-value=2.2e-14 Score=110.50 Aligned_cols=121 Identities=17% Similarity=0.121 Sum_probs=69.9
Q ss_pred ceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec---------ceeeeeecCcccccCcccccC
Q psy10767 5 SASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV---------RDIGYMPQVGLMRSGALLAED 75 (149)
Q Consensus 5 ~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~---------~~i~~~~q~~~~~~~~~~~~~ 75 (149)
.++++++.+++| +.|+||||||||||+++|++... .|.|.+++.++ ..+++++|......+.+...+
T Consensus 64 ~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~iD 139 (278)
T 1iy2_A 64 RFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFID 139 (278)
T ss_dssp HHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSEEEEEE
T ss_pred HHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCcEEehh
Confidence 467888999988 89999999999999999999875 78888876543 124455554221111111111
Q ss_pred ChhHHHhhccc--CchHHHHHHHhhhhHHHHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCC
Q psy10767 76 SPSYLLEYYNC--STLEDVFLYLCEQDQILFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPT 139 (149)
Q Consensus 76 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt 139 (149)
.+......... ......... ........ +||||+||+.+++|+.++|++ +|++.
T Consensus 140 eid~l~~~~~~~~~~~~~~~~~------~~~~ll~~--lsgg~~~~~~i~~a~t~~p~~--ld~~l 195 (278)
T 1iy2_A 140 EIDAVGRKRGSGVGGGNDEREQ------TLNQLLVE--MDGFEKDTAIVVMAATNRPDI--LDPAL 195 (278)
T ss_dssp THHHHHCC--------CHHHHH------HHHHHHHH--HTTCCTTCCEEEEEEESCTTS--SCHHH
T ss_pred hhHhhhcccccccCCcchHHHH------HHHHHHHH--HhCCCCCCCEEEEEecCCchh--CCHhH
Confidence 11111000000 000000000 01111112 278999999999999999987 56654
No 144
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.21 E-value=1e-11 Score=90.29 Aligned_cols=37 Identities=32% Similarity=0.407 Sum_probs=32.1
Q ss_pred EEEEECCCCCCHHHHHHHHhcCccC-----------CcceEEECCeec
Q psy10767 18 AYGLLGPSGCGKTTLLSCIVNRLRL-----------DHGSISLSARTV 54 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i~g~~~~-----------~~G~i~~~g~~~ 54 (149)
.++|+|+||||||||++.++|...+ ++|+|.++|.++
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~ 78 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 78 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEE
Confidence 5899999999999999999998765 478899988654
No 145
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.21 E-value=1.1e-11 Score=97.67 Aligned_cols=46 Identities=17% Similarity=0.274 Sum_probs=31.0
Q ss_pred EEEEECCCCCCHHHHHHHHhc-CccCCcceEEECCeec-------ceeeeeecC
Q psy10767 18 AYGLLGPSGCGKTTLLSCIVN-RLRLDHGSISLSARTV-------RDIGYMPQV 63 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i~g-~~~~~~G~i~~~g~~~-------~~i~~~~q~ 63 (149)
.+.|.||||+||||++++|++ ++.|+.|++.+++.++ ..++++++.
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~ 91 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSP 91 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECS
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeeccc
Confidence 389999999999999999999 7889999999987654 235666665
No 146
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.20 E-value=3.1e-14 Score=108.11 Aligned_cols=45 Identities=27% Similarity=0.295 Sum_probs=39.1
Q ss_pred ceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCee
Q psy10767 5 SASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSART 53 (149)
Q Consensus 5 ~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~ 53 (149)
.++++++.+++| +.|+||||||||||+++|++... .|.+.+++.+
T Consensus 40 ~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~ 84 (254)
T 1ixz_A 40 RFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSD 84 (254)
T ss_dssp HHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHH
T ss_pred HHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHH
Confidence 467888999998 89999999999999999999875 7888887654
No 147
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.15 E-value=4.7e-12 Score=105.91 Aligned_cols=50 Identities=22% Similarity=0.149 Sum_probs=45.8
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCee
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSART 53 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~ 53 (149)
..++++++.+.+|+.++|+||||||||||+++|+|+++|++|.|.+.+..
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~ 297 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTR 297 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSC
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcc
Confidence 35678999999999999999999999999999999999999999997753
No 148
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=99.12 E-value=6.6e-12 Score=98.92 Aligned_cols=57 Identities=25% Similarity=0.286 Sum_probs=35.0
Q ss_pred EEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEE---CCeec-------ce-eeeeecCcccc
Q psy10767 11 TVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISL---SARTV-------RD-IGYMPQVGLMR 67 (149)
Q Consensus 11 ~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~---~g~~~-------~~-i~~~~q~~~~~ 67 (149)
+++.+|++++|+||||||||||+|+|+|..+|..|+|.+ +|+.. +. +++++|.+.+.
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~ 235 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFS 235 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEETTEEEESSCSCS
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHHhhcCCEEEecCCCcc
Confidence 567789999999999999999999999999999999998 66543 11 68999986543
No 149
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.12 E-value=2.9e-11 Score=100.91 Aligned_cols=35 Identities=29% Similarity=0.442 Sum_probs=33.3
Q ss_pred ChhHHHHHHHHHHHhcCC--CEEEEcCCCCCCCcCCC
Q psy10767 113 FGGQQRRVSFAVSLIHDP--KILILDEPTVGLDPVLS 147 (149)
Q Consensus 113 sgGqkqrv~iaral~~~p--~illlDEPt~gLD~~~~ 147 (149)
||||||||+|||+++.+| ++|||||||+|||+..+
T Consensus 399 SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~ 435 (517)
T 4ad8_A 399 SGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAA 435 (517)
T ss_dssp CSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHH
T ss_pred CHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHH
Confidence 999999999999999999 99999999999998653
No 150
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=99.09 E-value=2.5e-10 Score=89.28 Aligned_cols=32 Identities=28% Similarity=0.337 Sum_probs=29.9
Q ss_pred eCCcEEEEECCCCCCHHHHHHHHhcCccCCcc
Q psy10767 14 FGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHG 45 (149)
Q Consensus 14 ~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G 45 (149)
.+|++++|+|+|||||||+++.|++.+.+++|
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G 134 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKH 134 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcC
Confidence 57899999999999999999999999988777
No 151
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.08 E-value=5.3e-11 Score=105.39 Aligned_cols=37 Identities=27% Similarity=0.504 Sum_probs=33.8
Q ss_pred CCChhHHHHHHHHHHHhcCC--CEEEEcCCCCCCCcCCC
Q psy10767 111 SAFGGQQRRVSFAVSLIHDP--KILILDEPTVGLDPVLS 147 (149)
Q Consensus 111 ~~sgGqkqrv~iaral~~~p--~illlDEPt~gLD~~~~ 147 (149)
.|||||||||+||++|..+| ++|||||||++||+..+
T Consensus 504 tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~ 542 (972)
T 2r6f_A 504 TLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDN 542 (972)
T ss_dssp GCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGH
T ss_pred cCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHH
Confidence 46999999999999999985 99999999999999754
No 152
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.07 E-value=5.6e-11 Score=104.36 Aligned_cols=37 Identities=30% Similarity=0.543 Sum_probs=33.9
Q ss_pred CCChhHHHHHHHHHHHhcCC--CEEEEcCCCCCCCcCCC
Q psy10767 111 SAFGGQQRRVSFAVSLIHDP--KILILDEPTVGLDPVLS 147 (149)
Q Consensus 111 ~~sgGqkqrv~iaral~~~p--~illlDEPt~gLD~~~~ 147 (149)
.|||||||||+||++|+.+| ++|||||||++||+..+
T Consensus 379 tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~ 417 (842)
T 2vf7_A 379 TLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADT 417 (842)
T ss_dssp GSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGH
T ss_pred cCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHH
Confidence 46999999999999999999 59999999999999754
No 153
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.06 E-value=3.2e-11 Score=88.79 Aligned_cols=28 Identities=39% Similarity=0.532 Sum_probs=23.9
Q ss_pred eCCcEEEEECCCCCCHHHHHHHHhcCcc
Q psy10767 14 FGVTAYGLLGPSGCGKTTLLSCIVNRLR 41 (149)
Q Consensus 14 ~~g~~~~iiG~nGaGKSTLl~~i~g~~~ 41 (149)
++|++++|+||||||||||+++|+|+++
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 4789999999999999999999999875
No 154
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=99.06 E-value=3.8e-11 Score=87.28 Aligned_cols=26 Identities=35% Similarity=0.507 Sum_probs=24.6
Q ss_pred CcEEEEECCCCCCHHHHHHHHhcCcc
Q psy10767 16 VTAYGLLGPSGCGKTTLLSCIVNRLR 41 (149)
Q Consensus 16 g~~~~iiG~nGaGKSTLl~~i~g~~~ 41 (149)
|++++|+||||||||||+++|+|+++
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 57899999999999999999999987
No 155
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.06 E-value=2.3e-10 Score=93.01 Aligned_cols=41 Identities=20% Similarity=0.282 Sum_probs=32.4
Q ss_pred EEeCCcEEEEECCCCCCHHHHHH--HHhcCccCCcc-----eEEECCe
Q psy10767 12 VIFGVTAYGLLGPSGCGKTTLLS--CIVNRLRLDHG-----SISLSAR 52 (149)
Q Consensus 12 ~~~~g~~~~iiG~nGaGKSTLl~--~i~g~~~~~~G-----~i~~~g~ 52 (149)
-+.+|+++.|+||||||||||++ ++.+..+++.| .+++++.
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E 221 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTE 221 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESS
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCC
Confidence 47899999999999999999999 45677766444 6666553
No 156
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.05 E-value=8.1e-11 Score=104.48 Aligned_cols=36 Identities=28% Similarity=0.519 Sum_probs=33.2
Q ss_pred CCChhHHHHHHHHHHHhcC--CCEEEEcCCCCCCCcCC
Q psy10767 111 SAFGGQQRRVSFAVSLIHD--PKILILDEPTVGLDPVL 146 (149)
Q Consensus 111 ~~sgGqkqrv~iaral~~~--p~illlDEPt~gLD~~~ 146 (149)
.|||||||||+||++|..+ |++|||||||++||+..
T Consensus 521 tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~ 558 (993)
T 2ygr_A 521 TLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRD 558 (993)
T ss_dssp GCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCHHH
T ss_pred cCCHHHHHHHHHHHHHhhCCCCcEEEEeCcccCCCHHH
Confidence 4699999999999999998 59999999999999864
No 157
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.04 E-value=2.7e-13 Score=107.34 Aligned_cols=60 Identities=23% Similarity=0.385 Sum_probs=46.0
Q ss_pred ceecceEEEeCC-------cEEEEECCCCCCHHHHHHHHhcCc----cCCcceEEECCeec---------ceeeeeecCc
Q psy10767 5 SASSLNTVIFGV-------TAYGLLGPSGCGKTTLLSCIVNRL----RLDHGSISLSARTV---------RDIGYMPQVG 64 (149)
Q Consensus 5 ~~~~i~~~~~~g-------~~~~iiG~nGaGKSTLl~~i~g~~----~~~~G~i~~~g~~~---------~~i~~~~q~~ 64 (149)
+++++++.+..| +.++|+||||||||||+++|+|.. .+++|.+..++.++ ..|.+++|.+
T Consensus 33 ~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~iDE~~ 112 (334)
T 1in4_A 33 VKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEIH 112 (334)
T ss_dssp HHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEEETGG
T ss_pred HHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEEcchh
Confidence 456677777665 789999999999999999999998 67778777655432 2477777753
No 158
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.00 E-value=4.6e-10 Score=81.70 Aligned_cols=37 Identities=32% Similarity=0.417 Sum_probs=30.1
Q ss_pred EEEEECCCCCCHHHHHHHHhcCcc-----CC------cceEEECCeec
Q psy10767 18 AYGLLGPSGCGKTTLLSCIVNRLR-----LD------HGSISLSARTV 54 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i~g~~~-----~~------~G~i~~~g~~~ 54 (149)
.++|+|+||||||||++.++|... |+ .|+|.++|.++
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~ 54 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 54 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEE
Confidence 479999999999999999999843 33 57888888653
No 159
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.98 E-value=2.7e-10 Score=81.94 Aligned_cols=39 Identities=15% Similarity=0.118 Sum_probs=34.8
Q ss_pred ecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcce
Q psy10767 7 SSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGS 46 (149)
Q Consensus 7 ~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~ 46 (149)
+++++.+.+| +.+|+||||||||||+++|.+++.+..|.
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~ 56 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAK 56 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTG
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCccc
Confidence 6888999988 99999999999999999999988776653
No 160
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.96 E-value=7.8e-11 Score=89.82 Aligned_cols=50 Identities=26% Similarity=0.260 Sum_probs=42.8
Q ss_pred eCCcEEEEECCCCCCHHHHHHHHh---cCccCCcceEE--------ECCeec----------ceeeeeecC
Q psy10767 14 FGVTAYGLLGPSGCGKTTLLSCIV---NRLRLDHGSIS--------LSARTV----------RDIGYMPQV 63 (149)
Q Consensus 14 ~~g~~~~iiG~nGaGKSTLl~~i~---g~~~~~~G~i~--------~~g~~~----------~~i~~~~q~ 63 (149)
.+|++++|+|||||||||++++|+ |+..+++|.++ .+|.++ ..+++++|.
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 95 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVS 95 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEec
Confidence 678999999999999999999999 99999999998 777654 236777764
No 161
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.95 E-value=4.3e-10 Score=82.01 Aligned_cols=35 Identities=26% Similarity=0.103 Sum_probs=29.7
Q ss_pred EEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcc
Q psy10767 11 TVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHG 45 (149)
Q Consensus 11 ~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G 45 (149)
+++.+|++++|+|||||||||++++|++.+.|+.|
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~ 35 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK 35 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE
Confidence 46789999999999999999999999999977655
No 162
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.94 E-value=1.5e-11 Score=104.36 Aligned_cols=59 Identities=19% Similarity=0.214 Sum_probs=48.9
Q ss_pred ceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCc-ceEEECCeec----ceeeeeecC
Q psy10767 5 SASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDH-GSISLSARTV----RDIGYMPQV 63 (149)
Q Consensus 5 ~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~-G~i~~~g~~~----~~i~~~~q~ 63 (149)
+++++++.+..|+.+.|+||||||||||+++|+++..+.. |.+.+.+... ..+.++|+.
T Consensus 49 ~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~~p~i~~~p~g 112 (604)
T 3k1j_A 49 AVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENMPRIKTVPAC 112 (604)
T ss_dssp HHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTTSCEEEEEETT
T ss_pred hHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccccCCcEEEEecc
Confidence 5678899999999999999999999999999999998887 7777765443 246677664
No 163
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=98.94 E-value=3.1e-10 Score=92.55 Aligned_cols=36 Identities=22% Similarity=0.338 Sum_probs=33.2
Q ss_pred CChhHHHHHHHHHHHh----cCCCEEEEcCCCCCCCcCCC
Q psy10767 112 AFGGQQRRVSFAVSLI----HDPKILILDEPTVGLDPVLS 147 (149)
Q Consensus 112 ~sgGqkqrv~iaral~----~~p~illlDEPt~gLD~~~~ 147 (149)
+|||||||++||++|+ .+|+++||||||++||+..+
T Consensus 334 lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~ 373 (430)
T 1w1w_A 334 LSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNV 373 (430)
T ss_dssp SCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHH
T ss_pred CCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHH
Confidence 6999999999999999 58999999999999998653
No 164
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=98.91 E-value=4.3e-10 Score=90.17 Aligned_cols=37 Identities=43% Similarity=0.520 Sum_probs=32.6
Q ss_pred CCChhHHHHH------HHHHHHhcC-CCEEEEcCCCCCCCcCCC
Q psy10767 111 SAFGGQQRRV------SFAVSLIHD-PKILILDEPTVGLDPVLS 147 (149)
Q Consensus 111 ~~sgGqkqrv------~iaral~~~-p~illlDEPt~gLD~~~~ 147 (149)
.+||||+||+ ++|++++.+ |+++||||||++||+..+
T Consensus 280 ~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~ 323 (371)
T 3auy_A 280 NLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRR 323 (371)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHH
T ss_pred hcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHH
Confidence 4699999988 567899999 999999999999998653
No 165
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.91 E-value=1.5e-10 Score=84.86 Aligned_cols=44 Identities=25% Similarity=0.270 Sum_probs=37.5
Q ss_pred eEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceE--EECCeec
Q psy10767 10 NTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSI--SLSARTV 54 (149)
Q Consensus 10 ~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i--~~~g~~~ 54 (149)
++...+|++++|+|||||||||++++|++.+. ..|.+ ++++.++
T Consensus 19 ~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 19 RLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNV 64 (200)
T ss_dssp HHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHH
T ss_pred HhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchh
Confidence 34458899999999999999999999999987 67887 8877554
No 166
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.89 E-value=5.5e-10 Score=81.87 Aligned_cols=49 Identities=20% Similarity=0.133 Sum_probs=37.7
Q ss_pred EEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeecc--------eeeeeecC
Q psy10767 11 TVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVR--------DIGYMPQV 63 (149)
Q Consensus 11 ~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~~--------~i~~~~q~ 63 (149)
+...+|++++|+|||||||||++++|++.+ |.+.+++.++. .+++++|+
T Consensus 24 m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~~~~~~~~~~~~g~~~~~ 80 (200)
T 4eun_A 24 MTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAFHSPENIATMQRGIPLTD 80 (200)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGGSCHHHHHHHHTTCCCCH
T ss_pred hcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEcccccccHHHHHHHhcCCCCCC
Confidence 345689999999999999999999999987 88999876542 34666664
No 167
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.86 E-value=1.2e-09 Score=80.08 Aligned_cols=38 Identities=29% Similarity=0.293 Sum_probs=24.7
Q ss_pred ccceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCc
Q psy10767 3 DVSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRL 40 (149)
Q Consensus 3 ~~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~ 40 (149)
+++++|+||++.++.+++|+|++||||||+.+.|++.+
T Consensus 12 ~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 12 DLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 46899999999999999999999999999999999765
No 168
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.84 E-value=8.6e-10 Score=79.71 Aligned_cols=36 Identities=17% Similarity=0.177 Sum_probs=29.7
Q ss_pred eCCcEEEEECCCCCCHHHHHHHHhcCccC-CcceEEE
Q psy10767 14 FGVTAYGLLGPSGCGKTTLLSCIVNRLRL-DHGSISL 49 (149)
Q Consensus 14 ~~g~~~~iiG~nGaGKSTLl~~i~g~~~~-~~G~i~~ 49 (149)
.+|++++|+||||||||||+++|++.+++ ..|.|..
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ 39 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPH 39 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeec
Confidence 36899999999999999999999998763 4455543
No 169
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.78 E-value=2e-09 Score=80.68 Aligned_cols=42 Identities=21% Similarity=0.127 Sum_probs=35.6
Q ss_pred cceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCee
Q psy10767 8 SLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSART 53 (149)
Q Consensus 8 ~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~ 53 (149)
+-+...++|++++|.|+|||||||++++|++. .|+|.+.+.+
T Consensus 12 ~~~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~ 53 (230)
T 2vp4_A 12 TKYAEGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEP 53 (230)
T ss_dssp CCBTTTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCT
T ss_pred CccCCCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecC
Confidence 34455688999999999999999999999997 6888887654
No 170
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.78 E-value=6.3e-11 Score=98.84 Aligned_cols=46 Identities=26% Similarity=0.289 Sum_probs=39.3
Q ss_pred ceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec
Q psy10767 5 SASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV 54 (149)
Q Consensus 5 ~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~ 54 (149)
.++++++.+++| +.|+||||+|||||+++|++... .+.+.+++.++
T Consensus 55 ~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~ 100 (499)
T 2dhr_A 55 RFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDF 100 (499)
T ss_dssp GTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGG
T ss_pred hhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHH
Confidence 467888899988 89999999999999999999874 67888877654
No 171
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.77 E-value=1.6e-09 Score=79.60 Aligned_cols=41 Identities=29% Similarity=0.254 Sum_probs=36.1
Q ss_pred EEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCe
Q psy10767 12 VIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSAR 52 (149)
Q Consensus 12 ~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~ 52 (149)
...+|++++|+|+|||||||++++|++.+++..|.|.+.+.
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~ 58 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHM 58 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEG
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEecc
Confidence 35789999999999999999999999999888888877543
No 172
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.74 E-value=1.9e-09 Score=85.16 Aligned_cols=48 Identities=21% Similarity=0.186 Sum_probs=43.8
Q ss_pred ecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec
Q psy10767 7 SSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV 54 (149)
Q Consensus 7 ~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~ 54 (149)
++++|++.++++++|+|+||+||||++..|++.+.+..|+|.+.+.+.
T Consensus 96 ~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~ 143 (320)
T 1zu4_A 96 YRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADT 143 (320)
T ss_dssp CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred cCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 689999999999999999999999999999999999999999866544
No 173
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.73 E-value=4.8e-09 Score=77.70 Aligned_cols=32 Identities=22% Similarity=0.418 Sum_probs=26.8
Q ss_pred eEEEeCCcEEEEECCCCCCHHHHHHHHhcCcc
Q psy10767 10 NTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLR 41 (149)
Q Consensus 10 ~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~ 41 (149)
|+...+|++++|+||||||||||++.|.+.++
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred cCCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 44556899999999999999999999998765
No 174
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.71 E-value=8.9e-09 Score=83.50 Aligned_cols=40 Identities=15% Similarity=0.282 Sum_probs=36.6
Q ss_pred EEeCCcEEEEECCCCCCHHHHHHHHhc------------CccCCcceEEECC
Q psy10767 12 VIFGVTAYGLLGPSGCGKTTLLSCIVN------------RLRLDHGSISLSA 51 (149)
Q Consensus 12 ~~~~g~~~~iiG~nGaGKSTLl~~i~g------------~~~~~~G~i~~~g 51 (149)
.+..|..+||+|+||||||||+|+|+| ...|+.|.+.+.+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~ 67 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPD 67 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECC
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCC
Confidence 457899999999999999999999999 6678999999987
No 175
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.71 E-value=1.5e-09 Score=85.97 Aligned_cols=45 Identities=20% Similarity=0.321 Sum_probs=33.9
Q ss_pred ceecceEEEeCCc------EEEEECCCCCCHHHHHHHHhcCcc--CCcceEEE
Q psy10767 5 SASSLNTVIFGVT------AYGLLGPSGCGKTTLLSCIVNRLR--LDHGSISL 49 (149)
Q Consensus 5 ~~~~i~~~~~~g~------~~~iiG~nGaGKSTLl~~i~g~~~--~~~G~i~~ 49 (149)
.+++++..+.++. ++||+||||||||||+++|.+++. |++|.+.+
T Consensus 75 ~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~ 127 (321)
T 3tqc_A 75 TLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEV 127 (321)
T ss_dssp HHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEE
T ss_pred HHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEE
Confidence 3445555565555 899999999999999999999987 35555433
No 176
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.67 E-value=1.2e-08 Score=75.36 Aligned_cols=29 Identities=28% Similarity=0.257 Sum_probs=27.3
Q ss_pred eCCcEEEEECCCCCCHHHHHHHHhcCccC
Q psy10767 14 FGVTAYGLLGPSGCGKTTLLSCIVNRLRL 42 (149)
Q Consensus 14 ~~g~~~~iiG~nGaGKSTLl~~i~g~~~~ 42 (149)
++|++++|+||||||||||++.|++.+++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 57999999999999999999999999876
No 177
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.66 E-value=8e-09 Score=73.67 Aligned_cols=37 Identities=27% Similarity=0.397 Sum_probs=31.6
Q ss_pred eCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec
Q psy10767 14 FGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV 54 (149)
Q Consensus 14 ~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~ 54 (149)
.+|++++|+|+|||||||++++|++.+ |.+.+++.++
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~ 42 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFL 42 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCccc
Confidence 468999999999999999999999865 7788876543
No 178
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.66 E-value=5.5e-09 Score=88.10 Aligned_cols=43 Identities=28% Similarity=0.252 Sum_probs=37.9
Q ss_pred EEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcc-eEE-ECCeec
Q psy10767 12 VIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHG-SIS-LSARTV 54 (149)
Q Consensus 12 ~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G-~i~-~~g~~~ 54 (149)
.+.+|++++|+|+||||||||+++|++.+.|++| ++. +++.++
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIV 409 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHH
Confidence 4679999999999999999999999999999886 785 777543
No 179
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.63 E-value=2.7e-09 Score=81.62 Aligned_cols=37 Identities=22% Similarity=0.147 Sum_probs=34.2
Q ss_pred cceecceEEEeC---CcEEEEECCCCCCHHHHHHHHhcCc
Q psy10767 4 VSASSLNTVIFG---VTAYGLLGPSGCGKTTLLSCIVNRL 40 (149)
Q Consensus 4 ~~~~~i~~~~~~---g~~~~iiG~nGaGKSTLl~~i~g~~ 40 (149)
.+++++||++.+ |++++|+|++||||||+.++|++.+
T Consensus 33 ~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 33 QILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp HHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 478899999999 9999999999999999999998854
No 180
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.60 E-value=1.4e-09 Score=91.00 Aligned_cols=49 Identities=6% Similarity=0.125 Sum_probs=39.8
Q ss_pred ecceEEEeCCcEEEEECCCCCCHHHHHHHHhc--CccCCcceEEECCeecc
Q psy10767 7 SSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVN--RLRLDHGSISLSARTVR 55 (149)
Q Consensus 7 ~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g--~~~~~~G~i~~~g~~~~ 55 (149)
+.+++++.++..+.|+|++||||||++++|.. ++..+.|++.+...+.+
T Consensus 158 ~pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK 208 (512)
T 2ius_A 158 EPVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPK 208 (512)
T ss_dssp CEEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCS
T ss_pred CEEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCc
Confidence 35788888999999999999999999999876 55666788877655544
No 181
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.60 E-value=3.1e-08 Score=79.08 Aligned_cols=35 Identities=23% Similarity=0.233 Sum_probs=28.2
Q ss_pred EEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcce
Q psy10767 12 VIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGS 46 (149)
Q Consensus 12 ~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~ 46 (149)
-+++|+++.|.||+|||||||+..++.......|.
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~ 91 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGI 91 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCC
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCe
Confidence 46799999999999999999988887665444333
No 182
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.60 E-value=8.2e-09 Score=83.31 Aligned_cols=43 Identities=21% Similarity=0.137 Sum_probs=38.0
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEE
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISL 49 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~ 49 (149)
.+++++++.+++|++++|+||||||||||+++|+|.. +|++..
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~---~g~~~~ 199 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC---GGKALN 199 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH---CCEEEC
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc---CCcEEE
Confidence 3578899999999999999999999999999999853 677765
No 183
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=98.58 E-value=2.4e-08 Score=81.34 Aligned_cols=34 Identities=21% Similarity=0.348 Sum_probs=29.4
Q ss_pred EEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCc
Q psy10767 11 TVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDH 44 (149)
Q Consensus 11 ~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~ 44 (149)
+++.++++++|+||||||||||+++|+++..+.+
T Consensus 21 ~~~~~~~~~~i~G~nG~GKstll~ai~~~~~~~~ 54 (430)
T 1w1w_A 21 VGFGESNFTSIIGPNGSGKSNMMDAISFVLGVRS 54 (430)
T ss_dssp EECTTCSEEEEECSTTSSHHHHHHHHHHHTTC--
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHHhhhcccc
Confidence 5667899999999999999999999999887765
No 184
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.56 E-value=4.9e-08 Score=71.48 Aligned_cols=31 Identities=26% Similarity=0.236 Sum_probs=27.9
Q ss_pred EEEeCCcEEEEECCCCCCHHHHHHHHhcCcc
Q psy10767 11 TVIFGVTAYGLLGPSGCGKTTLLSCIVNRLR 41 (149)
Q Consensus 11 ~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~ 41 (149)
-.++++.+++|+|++||||||+++.|++.++
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~ 46 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHLP 46 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHTTST
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3567899999999999999999999999874
No 185
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.53 E-value=1e-08 Score=81.37 Aligned_cols=48 Identities=19% Similarity=0.184 Sum_probs=41.7
Q ss_pred ceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCe
Q psy10767 5 SASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSAR 52 (149)
Q Consensus 5 ~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~ 52 (149)
+++++++.+.++.+++|+|++|||||||++.|++.+.+..+++.+-+.
T Consensus 45 ~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~ 92 (341)
T 2p67_A 45 LLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAV 92 (341)
T ss_dssp HHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred HHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEee
Confidence 456888889999999999999999999999999998887777776443
No 186
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=98.49 E-value=4.4e-08 Score=69.46 Aligned_cols=28 Identities=29% Similarity=0.460 Sum_probs=24.8
Q ss_pred CCcEEEEECCCCCCHHHHHHHHhcCccC
Q psy10767 15 GVTAYGLLGPSGCGKTTLLSCIVNRLRL 42 (149)
Q Consensus 15 ~g~~~~iiG~nGaGKSTLl~~i~g~~~~ 42 (149)
.+.+++|+|+|||||||++++|++.+.+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~ 30 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM 30 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4678999999999999999999997643
No 187
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.45 E-value=5.5e-08 Score=77.47 Aligned_cols=39 Identities=28% Similarity=0.345 Sum_probs=33.9
Q ss_pred CCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCee
Q psy10767 15 GVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSART 53 (149)
Q Consensus 15 ~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~ 53 (149)
++.+++|+|++|||||||++.|+|...+..|+|.+.+.+
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~d 111 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVD 111 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeec
Confidence 478999999999999999999999988888888775543
No 188
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=98.43 E-value=3.2e-08 Score=73.15 Aligned_cols=34 Identities=38% Similarity=0.549 Sum_probs=29.9
Q ss_pred CcEEEEECCCCCCHHHHHHHHhcCc---cCCcceEEE
Q psy10767 16 VTAYGLLGPSGCGKTTLLSCIVNRL---RLDHGSISL 49 (149)
Q Consensus 16 g~~~~iiG~nGaGKSTLl~~i~g~~---~~~~G~i~~ 49 (149)
+.+++|+|++||||||+.++|++.+ .++.|++..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~ 41 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYR 41 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceee
Confidence 5689999999999999999998766 778888876
No 189
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=98.43 E-value=3.4e-08 Score=82.96 Aligned_cols=46 Identities=30% Similarity=0.400 Sum_probs=39.7
Q ss_pred ceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECC
Q psy10767 5 SASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSA 51 (149)
Q Consensus 5 ~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g 51 (149)
.+.++++.+ +|+++.|+||||||||||+++|++...+..|+|.+.+
T Consensus 98 ~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~ 143 (543)
T 3m6a_A 98 AVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGG 143 (543)
T ss_dssp HHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC
T ss_pred HHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecc
Confidence 455667777 7999999999999999999999999988888887765
No 190
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=98.43 E-value=1.5e-07 Score=66.25 Aligned_cols=30 Identities=27% Similarity=0.376 Sum_probs=24.4
Q ss_pred ecceEEEeCCcEEEEECCCCCCHHHHHHHHh
Q psy10767 7 SSLNTVIFGVTAYGLLGPSGCGKTTLLSCIV 37 (149)
Q Consensus 7 ~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~ 37 (149)
++..+.+.+ .+.+|+|||||||||++.+|.
T Consensus 15 ~~~~i~f~~-g~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 15 SDTVVEFKE-GINLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SSEEEECCS-EEEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEcCC-CeEEEECCCCCCHHHHHHHHH
Confidence 445556554 489999999999999999986
No 191
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.39 E-value=1.4e-07 Score=78.20 Aligned_cols=33 Identities=24% Similarity=0.333 Sum_probs=27.0
Q ss_pred eecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCc
Q psy10767 6 ASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRL 40 (149)
Q Consensus 6 ~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~ 40 (149)
++++++.+++| +.|+||+|+|||||+++|++..
T Consensus 41 ~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~ 73 (476)
T 2ce7_A 41 FNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEA 73 (476)
T ss_dssp HHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHH
T ss_pred HhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHc
Confidence 34556667777 7799999999999999999843
No 192
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=98.39 E-value=1.5e-07 Score=70.66 Aligned_cols=46 Identities=24% Similarity=0.292 Sum_probs=31.8
Q ss_pred ccceecceEEEe---CCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEE
Q psy10767 3 DVSASSLNTVIF---GVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISL 49 (149)
Q Consensus 3 ~~~~~~i~~~~~---~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~ 49 (149)
.+.+.++|+++. .|.+++|.|++||||||+++.|+..+.+ .+.+..
T Consensus 10 ~~~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~ 58 (229)
T 4eaq_A 10 GVDLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIM 58 (229)
T ss_dssp ----------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEE
T ss_pred CcCccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCcee
Confidence 356778888886 8999999999999999999999998877 666654
No 193
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=98.38 E-value=1e-07 Score=68.19 Aligned_cols=39 Identities=31% Similarity=0.355 Sum_probs=31.6
Q ss_pred eCCcEEEEECCCCCCHHHHHHHHhcCccCCcc--eEEECCee
Q psy10767 14 FGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHG--SISLSART 53 (149)
Q Consensus 14 ~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G--~i~~~g~~ 53 (149)
.+|++++|+|++||||||+.++|++.+.+ .| .+.+++..
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~~~ 43 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGDN 43 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECChH
Confidence 46899999999999999999999998765 56 56666543
No 194
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.37 E-value=7.1e-08 Score=79.18 Aligned_cols=45 Identities=9% Similarity=0.114 Sum_probs=36.3
Q ss_pred ceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcc-eEEE
Q psy10767 5 SASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHG-SISL 49 (149)
Q Consensus 5 ~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G-~i~~ 49 (149)
.|+++..-+.+|+++.|.|++|+|||||+..+++...+..| .|.+
T Consensus 192 ~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~ 237 (454)
T 2r6a_A 192 ELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAI 237 (454)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEE
T ss_pred HHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEE
Confidence 45666667899999999999999999999999988765444 3433
No 195
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=98.37 E-value=5.2e-07 Score=71.80 Aligned_cols=106 Identities=14% Similarity=0.040 Sum_probs=64.3
Q ss_pred eecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeecceeeeeecCcccccCcccccCChhHHHhhcc
Q psy10767 6 ASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAEDSPSYLLEYYN 85 (149)
Q Consensus 6 ~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~ 85 (149)
|+.+.--+.+|+++.|.|++|+|||||+..++.......+. +.|+.- +++..+...
T Consensus 36 LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~----------Vl~fSl-----------Ems~~ql~~--- 91 (338)
T 4a1f_A 36 LDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRG----------VAVFSL-----------EMSAEQLAL--- 91 (338)
T ss_dssp HHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCE----------EEEEES-----------SSCHHHHHH---
T ss_pred HHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCe----------EEEEeC-----------CCCHHHHHH---
Confidence 44444468999999999999999999999887765432222 222221 111111110
Q ss_pred cCchHHHHHHHhhhhHHHHhhcCCCCCChhHHHHHHHHHHHhcCCCEEEEcCCCCCCC
Q psy10767 86 CSTLEDVFLYLCEQDQILFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLD 143 (149)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sgGqkqrv~iaral~~~p~illlDEPt~gLD 143 (149)
+............-..+ .+|.++++|+..|...+.+++++|.|+|...++
T Consensus 92 ------Rlls~~~~v~~~~l~~g--~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~ 141 (338)
T 4a1f_A 92 ------RALSDLTSINMHDLESG--RLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIE 141 (338)
T ss_dssp ------HHHHHHHCCCHHHHHHT--CCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHH
T ss_pred ------HHHHHhhCCCHHHHhcC--CCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHH
Confidence 00000000011011112 348999999999999999999999999976554
No 196
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=98.36 E-value=7.6e-08 Score=80.21 Aligned_cols=34 Identities=18% Similarity=0.283 Sum_probs=30.4
Q ss_pred ceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcC
Q psy10767 5 SASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNR 39 (149)
Q Consensus 5 ~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~ 39 (149)
.++++++.+.+| +.+|+|+||||||||+.+|..+
T Consensus 50 ~~~~~~l~f~~g-~n~i~G~NGaGKS~lleAl~~l 83 (517)
T 4ad8_A 50 TITQLELELGGG-FCAFTGETGAGKSIIVDALGLL 83 (517)
T ss_dssp TBSCEEEECCCS-EEEEEESHHHHHHHHTHHHHHH
T ss_pred ceeeEEEecCCC-eEEEEcCCCCCHHHHHHHHHHH
Confidence 467889999998 9999999999999999999555
No 197
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=98.29 E-value=2.5e-07 Score=75.74 Aligned_cols=47 Identities=19% Similarity=0.073 Sum_probs=41.0
Q ss_pred ecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeecc
Q psy10767 7 SSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVR 55 (149)
Q Consensus 7 ~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~~ 55 (149)
++++|+ ++++++++|+|||||||++..|++.+.+..+.|.+.+.+..
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~ 137 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQ 137 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSS
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeecccc
Confidence 467777 89999999999999999999999999998889988665543
No 198
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.27 E-value=4.8e-07 Score=67.17 Aligned_cols=46 Identities=22% Similarity=0.216 Sum_probs=32.5
Q ss_pred eecc-eEEEeCCcEEEEECCCCCCHHHHHHHH-hcCccCCcceEEECC
Q psy10767 6 ASSL-NTVIFGVTAYGLLGPSGCGKTTLLSCI-VNRLRLDHGSISLSA 51 (149)
Q Consensus 6 ~~~i-~~~~~~g~~~~iiG~nGaGKSTLl~~i-~g~~~~~~G~i~~~g 51 (149)
|+.+ .--+.+|+++.|+||||||||||+..+ .+..+...+.++++.
T Consensus 12 LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~ 59 (247)
T 2dr3_A 12 VDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVAL 59 (247)
T ss_dssp HHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred HHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 4444 556899999999999999999996554 454444444455543
No 199
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=98.26 E-value=1.9e-07 Score=68.76 Aligned_cols=43 Identities=23% Similarity=0.135 Sum_probs=36.7
Q ss_pred EEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcc--eEEECCee
Q psy10767 11 TVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHG--SISLSART 53 (149)
Q Consensus 11 ~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G--~i~~~g~~ 53 (149)
+.+.+|.++.|+|++||||||+.+.|++.+.|+.| .+.+++..
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~ 64 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDN 64 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChH
Confidence 34578999999999999999999999999887788 77887543
No 200
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=98.26 E-value=2.4e-08 Score=87.08 Aligned_cols=32 Identities=22% Similarity=0.171 Sum_probs=29.2
Q ss_pred ChhHHHHHHHHHHHhcCCCEEEEcCCCC-CCCc
Q psy10767 113 FGGQQRRVSFAVSLIHDPKILILDEPTV-GLDP 144 (149)
Q Consensus 113 sgGqkqrv~iaral~~~p~illlDEPt~-gLD~ 144 (149)
++|+.+|..+++.++.+++++|+|||.. ++|.
T Consensus 192 T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~ 224 (773)
T 2xau_A 192 TDGMLLREAMEDHDLSRYSCIILDEAHERTLAT 224 (773)
T ss_dssp EHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHH
T ss_pred CHHHHHHHHhhCccccCCCEEEecCccccccch
Confidence 6899999999999999999999999996 7764
No 201
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=98.24 E-value=1e-06 Score=71.89 Aligned_cols=37 Identities=24% Similarity=0.441 Sum_probs=31.4
Q ss_pred EEEEECCCCCCHHHHHHHHhcCcc------------CCcceEEECCeec
Q psy10767 18 AYGLLGPSGCGKTTLLSCIVNRLR------------LDHGSISLSARTV 54 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i~g~~~------------~~~G~i~~~g~~~ 54 (149)
.++|+|+||||||||++.|+|... +..|.+.++|..+
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~ 230 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKY 230 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEE
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEE
Confidence 689999999999999999999853 5678899988753
No 202
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.22 E-value=6.9e-07 Score=65.14 Aligned_cols=22 Identities=36% Similarity=0.517 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q psy10767 18 AYGLLGPSGCGKTTLLSCIVNR 39 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i~g~ 39 (149)
+++|+|+|||||||+.++|+++
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l 25 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL 25 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
Confidence 6899999999999999999983
No 203
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.22 E-value=1.2e-06 Score=70.13 Aligned_cols=37 Identities=22% Similarity=0.458 Sum_probs=30.8
Q ss_pred EEEEECCCCCCHHHHHHHHhcCcc-----------CCcceEEECCeec
Q psy10767 18 AYGLLGPSGCGKTTLLSCIVNRLR-----------LDHGSISLSARTV 54 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i~g~~~-----------~~~G~i~~~g~~~ 54 (149)
+++|+|++|||||||++.|+|... ++.|.+.++|..+
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v 228 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKI 228 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEE
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEE
Confidence 489999999999999999999875 5678999988654
No 204
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.21 E-value=2.1e-07 Score=72.74 Aligned_cols=45 Identities=20% Similarity=0.127 Sum_probs=39.0
Q ss_pred ceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec
Q psy10767 9 LNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV 54 (149)
Q Consensus 9 i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~ 54 (149)
++++.+ +.+++++|+||+||||++..|++.+.+..++|.+.+.+.
T Consensus 92 i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~ 136 (297)
T 1j8m_F 92 VIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADV 136 (297)
T ss_dssp CSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred cccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 777766 999999999999999999999999988888888765543
No 205
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=98.19 E-value=1e-06 Score=64.97 Aligned_cols=29 Identities=24% Similarity=0.363 Sum_probs=23.5
Q ss_pred cceEEEeCCcEEEEECCCCCCHHHHHHHHh
Q psy10767 8 SLNTVIFGVTAYGLLGPSGCGKTTLLSCIV 37 (149)
Q Consensus 8 ~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~ 37 (149)
+.++.+.+ .+.+|+|||||||||++.+|.
T Consensus 16 ~~~i~f~~-~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 16 DTVVEFKE-GINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SEEEECCS-EEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEeCC-CeEEEEcCCCCCHHHHHHHHH
Confidence 44555554 589999999999999999984
No 206
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=98.18 E-value=1.7e-06 Score=61.32 Aligned_cols=27 Identities=22% Similarity=0.287 Sum_probs=23.2
Q ss_pred eCCcEEEEECCCCCCHHHHHHHHhcCc
Q psy10767 14 FGVTAYGLLGPSGCGKTTLLSCIVNRL 40 (149)
Q Consensus 14 ~~g~~~~iiG~nGaGKSTLl~~i~g~~ 40 (149)
++|..++|+|++|+|||||++.++|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 357789999999999999999999864
No 207
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.18 E-value=1.5e-06 Score=71.35 Aligned_cols=38 Identities=24% Similarity=0.139 Sum_probs=32.9
Q ss_pred CCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCe
Q psy10767 15 GVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSAR 52 (149)
Q Consensus 15 ~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~ 52 (149)
++.+++++|++||||||++..|++.+.+..++|.+-+.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~ 133 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAA 133 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEec
Confidence 57899999999999999999999999887777776443
No 208
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=98.17 E-value=1.6e-06 Score=62.36 Aligned_cols=47 Identities=23% Similarity=0.181 Sum_probs=27.0
Q ss_pred ceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcC--------ccCCcceEEECCe
Q psy10767 5 SASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNR--------LRLDHGSISLSAR 52 (149)
Q Consensus 5 ~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~--------~~~~~G~i~~~g~ 52 (149)
+++++++..+.. .++++|++|+|||||++.+.+- ..++.+++.+++.
T Consensus 13 ~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~ 67 (190)
T 1m2o_B 13 VLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNI 67 (190)
T ss_dssp -----------C-EEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETTE
T ss_pred HHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECCE
Confidence 467888887776 5689999999999999999972 2223456666653
No 209
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=98.16 E-value=8.5e-07 Score=63.73 Aligned_cols=37 Identities=24% Similarity=0.241 Sum_probs=31.8
Q ss_pred EEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEE
Q psy10767 12 VIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSIS 48 (149)
Q Consensus 12 ~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~ 48 (149)
...+|.++.|+|++||||||+.+.|+..+.+..+.+.
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~ 45 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVE 45 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEE
Confidence 4467899999999999999999999998877666653
No 210
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.16 E-value=8.2e-07 Score=70.56 Aligned_cols=44 Identities=23% Similarity=0.329 Sum_probs=32.5
Q ss_pred ceecceEEEeCCcEEEEECCCCCCHHHHHHHHhc--CccCCcceEEECC
Q psy10767 5 SASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVN--RLRLDHGSISLSA 51 (149)
Q Consensus 5 ~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g--~~~~~~G~i~~~g 51 (149)
.+++++++++ .++|+|++|||||||++.|+| +.+..+|.++...
T Consensus 26 ~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p 71 (360)
T 3t34_A 26 ALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRP 71 (360)
T ss_dssp CC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSC
T ss_pred ccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcc
Confidence 5677888887 899999999999999999999 5566667665433
No 211
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.15 E-value=1.1e-06 Score=69.84 Aligned_cols=26 Identities=23% Similarity=0.379 Sum_probs=23.0
Q ss_pred CCcEEEEECCCCCCHHHHHHHHhcCc
Q psy10767 15 GVTAYGLLGPSGCGKTTLLSCIVNRL 40 (149)
Q Consensus 15 ~g~~~~iiG~nGaGKSTLl~~i~g~~ 40 (149)
..-.++++|++|+|||||++.++|..
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~ 191 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAK 191 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34578999999999999999999865
No 212
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=98.13 E-value=1.1e-06 Score=63.92 Aligned_cols=21 Identities=38% Similarity=0.692 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q psy10767 18 AYGLLGPSGCGKTTLLSCIVN 38 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i~g 38 (149)
+++|+|+|||||||+.++|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 589999999999999999999
No 213
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=98.12 E-value=3.8e-06 Score=58.89 Aligned_cols=23 Identities=22% Similarity=0.489 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHhcCc
Q psy10767 18 AYGLLGPSGCGKTTLLSCIVNRL 40 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i~g~~ 40 (149)
.++|+|++|+|||||++.++|..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999964
No 214
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=98.12 E-value=2.5e-06 Score=60.62 Aligned_cols=22 Identities=23% Similarity=0.557 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q psy10767 18 AYGLLGPSGCGKTTLLSCIVNR 39 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i~g~ 39 (149)
.++|+|++|+|||||++.+++.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999984
No 215
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=98.12 E-value=1.4e-06 Score=62.69 Aligned_cols=32 Identities=19% Similarity=0.126 Sum_probs=26.4
Q ss_pred cceEEEeCCcEEEEECCCCCCHHHHHHHHhcC
Q psy10767 8 SLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNR 39 (149)
Q Consensus 8 ~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~ 39 (149)
++|+...++.+++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57888999999999999999999999999865
No 216
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.10 E-value=1.2e-06 Score=70.11 Aligned_cols=40 Identities=20% Similarity=0.158 Sum_probs=34.3
Q ss_pred EeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceE-EECCe
Q psy10767 13 IFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSI-SLSAR 52 (149)
Q Consensus 13 ~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i-~~~g~ 52 (149)
+++|+++.|+||+|||||||+..++....+..|.+ ++++.
T Consensus 58 i~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E 98 (356)
T 3hr8_A 58 YPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAE 98 (356)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecc
Confidence 67899999999999999999999999887777765 55543
No 217
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.09 E-value=1.9e-06 Score=69.95 Aligned_cols=41 Identities=15% Similarity=0.323 Sum_probs=33.6
Q ss_pred EEeCCcEEEEECCCCCCHHHHHHHHhcC-----------ccCCcceEEECCe
Q psy10767 12 VIFGVTAYGLLGPSGCGKTTLLSCIVNR-----------LRLDHGSISLSAR 52 (149)
Q Consensus 12 ~~~~g~~~~iiG~nGaGKSTLl~~i~g~-----------~~~~~G~i~~~g~ 52 (149)
.+..+..++|+|+||+|||||+++|+|. ..|+.|.+.+.+.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 4567788999999999999999999998 6677888887663
No 218
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=98.09 E-value=9.7e-07 Score=64.05 Aligned_cols=47 Identities=21% Similarity=0.208 Sum_probs=35.4
Q ss_pred ceecceEEEeCCcEEEEECCCCCCHHHHHHHHhcC--------ccCCcceEEECCe
Q psy10767 5 SASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNR--------LRLDHGSISLSAR 52 (149)
Q Consensus 5 ~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~--------~~~~~G~i~~~g~ 52 (149)
+++++|+..+... ++|+|++|||||||++.+.+- ..++.+.+.+++.
T Consensus 15 ~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~ 69 (198)
T 1f6b_A 15 VLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGM 69 (198)
T ss_dssp HHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTE
T ss_pred HHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECCE
Confidence 4567777777664 689999999999999999873 2334567777664
No 219
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=98.05 E-value=8.4e-06 Score=63.80 Aligned_cols=35 Identities=9% Similarity=-0.046 Sum_probs=28.8
Q ss_pred eecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCc
Q psy10767 6 ASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRL 40 (149)
Q Consensus 6 ~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~ 40 (149)
|+.+.--+.+|+++.|.|++|+|||||+..++...
T Consensus 58 LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~ 92 (315)
T 3bh0_A 58 LDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNM 92 (315)
T ss_dssp HHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 45555458999999999999999999998887543
No 220
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=98.04 E-value=2.4e-06 Score=62.47 Aligned_cols=29 Identities=28% Similarity=0.509 Sum_probs=25.4
Q ss_pred EEeCCcEEEEECCCCCCHHHHHHHHhcCc
Q psy10767 12 VIFGVTAYGLLGPSGCGKTTLLSCIVNRL 40 (149)
Q Consensus 12 ~~~~g~~~~iiG~nGaGKSTLl~~i~g~~ 40 (149)
...+|.+++|+||+||||||+.+.|...+
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 45678899999999999999999998766
No 221
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.03 E-value=1e-05 Score=62.01 Aligned_cols=31 Identities=32% Similarity=0.419 Sum_probs=24.6
Q ss_pred hhHHHHHHHHHHHhcCCCEEEEcCCCCCCCc
Q psy10767 114 GGQQRRVSFAVSLIHDPKILILDEPTVGLDP 144 (149)
Q Consensus 114 gGqkqrv~iaral~~~p~illlDEPt~gLD~ 144 (149)
++++.|..+.++...+|.+|++||+.+-++.
T Consensus 98 ~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~ 128 (297)
T 3b9p_A 98 GEKLVRALFAVARHMQPSIIFIDEVDSLLSE 128 (297)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTSBC
T ss_pred HHHHHHHHHHHHHHcCCcEEEeccHHHhccc
Confidence 4666777777888889999999999876554
No 222
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.99 E-value=2.3e-06 Score=66.58 Aligned_cols=26 Identities=23% Similarity=0.358 Sum_probs=23.1
Q ss_pred CCcEEEEECCCCCCHHHHHHHHhcCc
Q psy10767 15 GVTAYGLLGPSGCGKTTLLSCIVNRL 40 (149)
Q Consensus 15 ~g~~~~iiG~nGaGKSTLl~~i~g~~ 40 (149)
++.+++|+|++|||||||++.|.|..
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~ 32 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQK 32 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCC
Confidence 34589999999999999999999974
No 223
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.99 E-value=3.3e-06 Score=61.04 Aligned_cols=35 Identities=31% Similarity=0.336 Sum_probs=28.0
Q ss_pred cEEEEECCCCCCHHHHHHHHhcCccCC---cceEEECC
Q psy10767 17 TAYGLLGPSGCGKTTLLSCIVNRLRLD---HGSISLSA 51 (149)
Q Consensus 17 ~~~~iiG~nGaGKSTLl~~i~g~~~~~---~G~i~~~g 51 (149)
.+++|+|++|||||||++.|.+.+.+. -|.|..++
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~ 44 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTH 44 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCC
Confidence 578999999999999999999876543 35666554
No 224
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.99 E-value=6.5e-07 Score=71.72 Aligned_cols=39 Identities=26% Similarity=0.267 Sum_probs=34.1
Q ss_pred CccceecceEEEeCCcE--EEEECCCCCCHHHHHHHHhcCc
Q psy10767 2 ADVSASSLNTVIFGVTA--YGLLGPSGCGKTTLLSCIVNRL 40 (149)
Q Consensus 2 ~~~~~~~i~~~~~~g~~--~~iiG~nGaGKSTLl~~i~g~~ 40 (149)
++.+++.+++.+++|++ ++|+|++||||||+.++|++.+
T Consensus 8 ~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 8 ADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 34577888899999998 9999999999999999998864
No 225
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.98 E-value=6e-07 Score=70.57 Aligned_cols=42 Identities=17% Similarity=0.241 Sum_probs=35.0
Q ss_pred ceecceEEEeCCcE--EEEECCCCCCHHHHHHHHhcCccCCcce
Q psy10767 5 SASSLNTVIFGVTA--YGLLGPSGCGKTTLLSCIVNRLRLDHGS 46 (149)
Q Consensus 5 ~~~~i~~~~~~g~~--~~iiG~nGaGKSTLl~~i~g~~~~~~G~ 46 (149)
+++.++..+..|++ +.+.||+|+||||+++++++.+.+..+.
T Consensus 33 ~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~ 76 (340)
T 1sxj_C 33 VITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYS 76 (340)
T ss_dssp HHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHH
T ss_pred HHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCcc
Confidence 45567777888888 9999999999999999999987665543
No 226
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.97 E-value=4.1e-06 Score=59.76 Aligned_cols=25 Identities=32% Similarity=0.517 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHhcCccC
Q psy10767 18 AYGLLGPSGCGKTTLLSCIVNRLRL 42 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i~g~~~~ 42 (149)
.++|+|++|||||||++.+++...+
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~~ 28 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKKS 28 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC---
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCc
Confidence 4789999999999999999996433
No 227
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.93 E-value=3.9e-06 Score=60.98 Aligned_cols=25 Identities=24% Similarity=0.352 Sum_probs=22.4
Q ss_pred CcEEEEECCCCCCHHHHHHHHhcCc
Q psy10767 16 VTAYGLLGPSGCGKTTLLSCIVNRL 40 (149)
Q Consensus 16 g~~~~iiG~nGaGKSTLl~~i~g~~ 40 (149)
..+++|+|++||||||+.+.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999998765
No 228
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.90 E-value=6e-06 Score=58.89 Aligned_cols=25 Identities=36% Similarity=0.340 Sum_probs=22.0
Q ss_pred eCCcEEEEECCCCCCHHHHHHHHhc
Q psy10767 14 FGVTAYGLLGPSGCGKTTLLSCIVN 38 (149)
Q Consensus 14 ~~g~~~~iiG~nGaGKSTLl~~i~g 38 (149)
..|.+++|+|++||||||+.+.|+.
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3577899999999999999999983
No 229
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=97.86 E-value=8.4e-06 Score=60.85 Aligned_cols=37 Identities=24% Similarity=0.359 Sum_probs=27.3
Q ss_pred EEEeCCcEEEEECCCCCCHHHHHHHHhc---CccCCcceE
Q psy10767 11 TVIFGVTAYGLLGPSGCGKTTLLSCIVN---RLRLDHGSI 47 (149)
Q Consensus 11 ~~~~~g~~~~iiG~nGaGKSTLl~~i~g---~~~~~~G~i 47 (149)
-....+.+++|+|++||||||+.++|++ +..++.|.+
T Consensus 11 ~~~~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~d~~ 50 (236)
T 1q3t_A 11 DDKMKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAM 50 (236)
T ss_dssp ---CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHH
T ss_pred ccccCCcEEEEECCCCCCHHHHHHHHHHHcCCceecCCCe
Confidence 3456788999999999999999999986 333444443
No 230
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.85 E-value=3.5e-06 Score=72.38 Aligned_cols=41 Identities=22% Similarity=0.303 Sum_probs=31.6
Q ss_pred eEEEeCCcEEEEECCCCCCHHHHHHHHhcCccC--CcceEEECC
Q psy10767 10 NTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRL--DHGSISLSA 51 (149)
Q Consensus 10 ~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~--~~G~i~~~g 51 (149)
++.++++..++|+|++|||||||++.|++...+ ..|+| .+|
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g 45 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEG 45 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGT
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCC
Confidence 456788999999999999999999999976544 56776 444
No 231
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=97.84 E-value=1.1e-05 Score=64.32 Aligned_cols=30 Identities=13% Similarity=0.336 Sum_probs=25.1
Q ss_pred ecceEEEeCCcEEEEECCCCCCHHHHHHHHh
Q psy10767 7 SSLNTVIFGVTAYGLLGPSGCGKTTLLSCIV 37 (149)
Q Consensus 7 ~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~ 37 (149)
++..+.+.+ .+..|+|||||||||++.+|.
T Consensus 17 ~~~~i~f~~-gl~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 17 VNSRIKFEK-GIVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEECCS-EEEEEEECTTSSHHHHHHHHH
T ss_pred cceEEecCC-CeEEEECCCCCCHHHHHHHHH
Confidence 455666655 589999999999999999985
No 232
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.83 E-value=4.6e-06 Score=63.05 Aligned_cols=33 Identities=27% Similarity=0.512 Sum_probs=26.1
Q ss_pred CCcEEEEECCCCCCHHHHHHHHh---cCccCCcceE
Q psy10767 15 GVTAYGLLGPSGCGKTTLLSCIV---NRLRLDHGSI 47 (149)
Q Consensus 15 ~g~~~~iiG~nGaGKSTLl~~i~---g~~~~~~G~i 47 (149)
..-+++|.||+||||||+.+.|+ |+...+.|.+
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~ 43 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAM 43 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcH
Confidence 34589999999999999999998 6555555555
No 233
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.82 E-value=1.1e-05 Score=56.49 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHhcCc
Q psy10767 18 AYGLLGPSGCGKTTLLSCIVNRL 40 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i~g~~ 40 (149)
+++|+|++||||||+.+.|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998654
No 234
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.81 E-value=1.4e-05 Score=59.59 Aligned_cols=28 Identities=29% Similarity=0.460 Sum_probs=23.9
Q ss_pred EEEEECCCCCCHHHHHHHHhcCccCCcc
Q psy10767 18 AYGLLGPSGCGKTTLLSCIVNRLRLDHG 45 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i~g~~~~~~G 45 (149)
.++|+|++|+|||||++.|+|...+.++
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~ 58 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSG 58 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccC
Confidence 4799999999999999999998765554
No 235
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.79 E-value=8e-06 Score=61.46 Aligned_cols=43 Identities=26% Similarity=0.346 Sum_probs=28.6
Q ss_pred ecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCee
Q psy10767 7 SSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSART 53 (149)
Q Consensus 7 ~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~ 53 (149)
+++++..+.| +.|+||+|+|||||+++|++..... -+.+++.+
T Consensus 38 ~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~~~--~~~i~~~~ 80 (257)
T 1lv7_A 38 QKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAKVP--FFTISGSD 80 (257)
T ss_dssp -----CCCCE--EEEECCTTSCHHHHHHHHHHHHTCC--EEEECSCS
T ss_pred HHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcCCC--EEEEeHHH
Confidence 3444455555 8899999999999999999876432 35565543
No 236
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.79 E-value=8.6e-06 Score=65.03 Aligned_cols=27 Identities=26% Similarity=0.338 Sum_probs=20.7
Q ss_pred EEEECCCCCCHHHHHHHHhcCccCCcc
Q psy10767 19 YGLLGPSGCGKTTLLSCIVNRLRLDHG 45 (149)
Q Consensus 19 ~~iiG~nGaGKSTLl~~i~g~~~~~~G 45 (149)
++|+|++|+|||||++.|.+......+
T Consensus 40 I~vvG~~g~GKSTLln~L~~~~~~~~~ 66 (361)
T 2qag_A 40 LMVVGESGLGKSTLINSLFLTDLYPER 66 (361)
T ss_dssp EEECCCTTSCHHHHHHHHTTCCC----
T ss_pred EEEEcCCCCCHHHHHHHHhCCCCCCCC
Confidence 389999999999999999887554444
No 237
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.77 E-value=8.2e-06 Score=66.26 Aligned_cols=34 Identities=26% Similarity=0.264 Sum_probs=31.8
Q ss_pred cceEEEeCCcEEEEECCCCCCHHHHHHHHhcCcc
Q psy10767 8 SLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLR 41 (149)
Q Consensus 8 ~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~ 41 (149)
|+++.+.+|+.++|+||+|||||||++.|++...
T Consensus 166 D~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~ 199 (422)
T 3ice_A 166 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 199 (422)
T ss_dssp HHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHH
T ss_pred eeeeeecCCcEEEEecCCCCChhHHHHHHHHHHh
Confidence 7889999999999999999999999999998764
No 238
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.75 E-value=1.1e-05 Score=61.02 Aligned_cols=41 Identities=22% Similarity=0.182 Sum_probs=32.3
Q ss_pred EEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECCeec
Q psy10767 12 VIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV 54 (149)
Q Consensus 12 ~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~ 54 (149)
....+.++.|+|++||||||+.+.|+..+. .+.+.+++..+
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~D~~ 68 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDGDSF 68 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECGGGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEecHHH
Confidence 456788999999999999999999998764 24566666443
No 239
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.75 E-value=1.9e-05 Score=55.85 Aligned_cols=26 Identities=27% Similarity=0.416 Sum_probs=22.9
Q ss_pred CcEEEEECCCCCCHHHHHHHHhcCcc
Q psy10767 16 VTAYGLLGPSGCGKTTLLSCIVNRLR 41 (149)
Q Consensus 16 g~~~~iiG~nGaGKSTLl~~i~g~~~ 41 (149)
+.++.|+|++||||||+.+.|+..+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 56789999999999999999987653
No 240
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=97.73 E-value=2.8e-05 Score=62.36 Aligned_cols=35 Identities=20% Similarity=0.502 Sum_probs=29.5
Q ss_pred cEEEEECCCCCCHHHHHHHHhc-----------CccCCcceEEECC
Q psy10767 17 TAYGLLGPSGCGKTTLLSCIVN-----------RLRLDHGSISLSA 51 (149)
Q Consensus 17 ~~~~iiG~nGaGKSTLl~~i~g-----------~~~~~~G~i~~~g 51 (149)
-.++|+|.+|+|||||++.|++ ...|+.|.+.+.+
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 4589999999999999999998 4467778888765
No 241
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.73 E-value=1.9e-05 Score=55.00 Aligned_cols=19 Identities=21% Similarity=0.373 Sum_probs=18.2
Q ss_pred EEEEECCCCCCHHHHHHHH
Q psy10767 18 AYGLLGPSGCGKTTLLSCI 36 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i 36 (149)
+++|+|++||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
No 242
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.71 E-value=1.2e-05 Score=70.45 Aligned_cols=40 Identities=20% Similarity=0.208 Sum_probs=32.2
Q ss_pred eEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECC
Q psy10767 10 NTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSA 51 (149)
Q Consensus 10 ~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g 51 (149)
++.+.+++.+.|+||+|||||||+++|++..... .+.+++
T Consensus 232 ~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~--~i~v~~ 271 (806)
T 1ypw_A 232 AIGVKPPRGILLYGPPGTGKTLIARAVANETGAF--FFLING 271 (806)
T ss_dssp SSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCE--EEEEEH
T ss_pred hcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCc--EEEEEc
Confidence 3467889999999999999999999999987543 345543
No 243
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.71 E-value=2.3e-05 Score=55.70 Aligned_cols=25 Identities=24% Similarity=0.260 Sum_probs=22.1
Q ss_pred CcEEEEECCCCCCHHHHHHHHhcCc
Q psy10767 16 VTAYGLLGPSGCGKTTLLSCIVNRL 40 (149)
Q Consensus 16 g~~~~iiG~nGaGKSTLl~~i~g~~ 40 (149)
|-++.|.|++||||||+.+.|+..+
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5689999999999999999997744
No 244
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.70 E-value=5.2e-06 Score=60.44 Aligned_cols=26 Identities=27% Similarity=0.425 Sum_probs=22.8
Q ss_pred EEEEECCCCCCHHHHHHHHhcCccCC
Q psy10767 18 AYGLLGPSGCGKTTLLSCIVNRLRLD 43 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i~g~~~~~ 43 (149)
+++|.|++||||||+++.|...+...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~ 27 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAA 27 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 68999999999999999999877543
No 245
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.69 E-value=2.3e-05 Score=57.49 Aligned_cols=24 Identities=25% Similarity=0.307 Sum_probs=21.7
Q ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Q psy10767 15 GVTAYGLLGPSGCGKTTLLSCIVN 38 (149)
Q Consensus 15 ~g~~~~iiG~nGaGKSTLl~~i~g 38 (149)
.+-+++|.|++||||||+.+.|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999987
No 246
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=97.68 E-value=1.8e-05 Score=63.33 Aligned_cols=36 Identities=14% Similarity=0.255 Sum_probs=30.8
Q ss_pred CCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEEC
Q psy10767 15 GVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLS 50 (149)
Q Consensus 15 ~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~ 50 (149)
.+..+.|+|++||||||+++.+.....+..+.|.+.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~ 69 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIII 69 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEE
Confidence 456789999999999999999999887777777763
No 247
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.67 E-value=2.3e-05 Score=56.45 Aligned_cols=30 Identities=27% Similarity=0.385 Sum_probs=24.9
Q ss_pred CcEEEEECCCCCCHHHHHHHHhcCccCCcceEEEC
Q psy10767 16 VTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLS 50 (149)
Q Consensus 16 g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~ 50 (149)
..+++|+|++||||||+.+.|+.. |-..++
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-----g~~~id 37 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-----GYPVLD 37 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-----TCCEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-----CCEEEc
Confidence 457999999999999999999985 545554
No 248
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.67 E-value=2.6e-05 Score=56.01 Aligned_cols=23 Identities=30% Similarity=0.582 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHhcCc
Q psy10767 18 AYGLLGPSGCGKTTLLSCIVNRL 40 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i~g~~ 40 (149)
+++|+|++||||||+.+.|+..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 57999999999999999998843
No 249
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.67 E-value=2.3e-05 Score=59.39 Aligned_cols=23 Identities=26% Similarity=0.326 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHhcCc
Q psy10767 18 AYGLLGPSGCGKTTLLSCIVNRL 40 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i~g~~ 40 (149)
+++|+||+|||||||.+.|++..
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 68999999999999999998754
No 250
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.65 E-value=2.7e-05 Score=55.62 Aligned_cols=27 Identities=26% Similarity=0.235 Sum_probs=23.2
Q ss_pred eCCcEEEEECCCCCCHHHHHHHHhcCc
Q psy10767 14 FGVTAYGLLGPSGCGKTTLLSCIVNRL 40 (149)
Q Consensus 14 ~~g~~~~iiG~nGaGKSTLl~~i~g~~ 40 (149)
..+.++.|+|++||||||+.+.|+..+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 356789999999999999999997643
No 251
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=97.63 E-value=2.4e-05 Score=59.54 Aligned_cols=24 Identities=25% Similarity=0.468 Sum_probs=21.7
Q ss_pred EEEEECCCCCCHHHHHHHHhcCcc
Q psy10767 18 AYGLLGPSGCGKTTLLSCIVNRLR 41 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i~g~~~ 41 (149)
.++|+|++|||||||++.++|...
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~~ 28 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLRQ 28 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTCE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 479999999999999999999854
No 252
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=97.63 E-value=7.6e-05 Score=53.26 Aligned_cols=35 Identities=20% Similarity=0.388 Sum_probs=25.3
Q ss_pred EEEEECCCCCCHHHHHHHHhc-C----ccCCcc----eEEECCe
Q psy10767 18 AYGLLGPSGCGKTTLLSCIVN-R----LRLDHG----SISLSAR 52 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i~g-~----~~~~~G----~i~~~g~ 52 (149)
.++|+|++|+|||||++.+.+ . +.|+.+ .+.+++.
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~ 65 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQ 65 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCE
Confidence 479999999999999976554 3 455655 4555554
No 253
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.60 E-value=3.4e-05 Score=54.65 Aligned_cols=23 Identities=30% Similarity=0.478 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHhcCc
Q psy10767 18 AYGLLGPSGCGKTTLLSCIVNRL 40 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i~g~~ 40 (149)
++.|+|++||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 48899999999999999998654
No 254
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.60 E-value=3.9e-05 Score=54.04 Aligned_cols=22 Identities=23% Similarity=0.286 Sum_probs=20.2
Q ss_pred cEEEEECCCCCCHHHHHHHHhc
Q psy10767 17 TAYGLLGPSGCGKTTLLSCIVN 38 (149)
Q Consensus 17 ~~~~iiG~nGaGKSTLl~~i~g 38 (149)
.++.|.|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3688999999999999999987
No 255
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=97.60 E-value=4.3e-05 Score=54.28 Aligned_cols=23 Identities=39% Similarity=0.417 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHhcCc
Q psy10767 18 AYGLLGPSGCGKTTLLSCIVNRL 40 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i~g~~ 40 (149)
.++|+|++|+|||||++.+.+-.
T Consensus 18 ki~ivG~~~vGKSsL~~~l~~~~ 40 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLLKQLASED 40 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHCCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999863
No 256
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.60 E-value=3.5e-05 Score=56.25 Aligned_cols=22 Identities=41% Similarity=0.626 Sum_probs=19.0
Q ss_pred EEEECCCCCCHHHHHHHHhcCc
Q psy10767 19 YGLLGPSGCGKTTLLSCIVNRL 40 (149)
Q Consensus 19 ~~iiG~nGaGKSTLl~~i~g~~ 40 (149)
+.|+||||||||||++.|....
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 5799999999999999986543
No 257
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.58 E-value=4.9e-05 Score=54.78 Aligned_cols=26 Identities=23% Similarity=0.152 Sum_probs=23.8
Q ss_pred CCcEEEEECCCCCCHHHHHHHHhcCc
Q psy10767 15 GVTAYGLLGPSGCGKTTLLSCIVNRL 40 (149)
Q Consensus 15 ~g~~~~iiG~nGaGKSTLl~~i~g~~ 40 (149)
+|-+++|.|+.||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57789999999999999999999876
No 258
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.57 E-value=4.7e-05 Score=54.18 Aligned_cols=25 Identities=32% Similarity=0.365 Sum_probs=21.8
Q ss_pred CcEEEEECCCCCCHHHHHHHHhcCc
Q psy10767 16 VTAYGLLGPSGCGKTTLLSCIVNRL 40 (149)
Q Consensus 16 g~~~~iiG~nGaGKSTLl~~i~g~~ 40 (149)
+..+.|+|++||||||+.+.|+..+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 5678999999999999999997543
No 259
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.56 E-value=2.5e-05 Score=55.56 Aligned_cols=25 Identities=32% Similarity=0.340 Sum_probs=22.0
Q ss_pred eCCcEEEEECCCCCCHHHHHHHHhc
Q psy10767 14 FGVTAYGLLGPSGCGKTTLLSCIVN 38 (149)
Q Consensus 14 ~~g~~~~iiG~nGaGKSTLl~~i~g 38 (149)
..+.++.|+|++||||||+.+.|+.
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHH
Confidence 4567789999999999999999983
No 260
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.56 E-value=4e-05 Score=58.76 Aligned_cols=32 Identities=28% Similarity=0.461 Sum_probs=27.7
Q ss_pred cEEEEECCCCCCHHHHHHHHhcCccCCcceEE
Q psy10767 17 TAYGLLGPSGCGKTTLLSCIVNRLRLDHGSIS 48 (149)
Q Consensus 17 ~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~ 48 (149)
..+.|.||+|+||||+.++|++...+..+.+.
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~ 79 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMI 79 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGGEE
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcceE
Confidence 57899999999999999999999877766443
No 261
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.54 E-value=5.8e-05 Score=54.50 Aligned_cols=27 Identities=15% Similarity=0.243 Sum_probs=23.7
Q ss_pred CCcEEEEECCCCCCHHHHHHHHhcCcc
Q psy10767 15 GVTAYGLLGPSGCGKTTLLSCIVNRLR 41 (149)
Q Consensus 15 ~g~~~~iiG~nGaGKSTLl~~i~g~~~ 41 (149)
+|-+++|.|+.||||||+.+.|+..+.
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 467899999999999999999987654
No 262
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.52 E-value=4e-05 Score=55.19 Aligned_cols=26 Identities=27% Similarity=0.308 Sum_probs=22.7
Q ss_pred cEEEEECCCCCCHHHHHHHHhcCccC
Q psy10767 17 TAYGLLGPSGCGKTTLLSCIVNRLRL 42 (149)
Q Consensus 17 ~~~~iiG~nGaGKSTLl~~i~g~~~~ 42 (149)
-+++|+|++|||||||++.|.+.+..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~ 30 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVR 30 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHh
Confidence 37899999999999999999987653
No 263
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.52 E-value=5.6e-05 Score=54.77 Aligned_cols=27 Identities=22% Similarity=0.091 Sum_probs=23.8
Q ss_pred eCCcEEEEECCCCCCHHHHHHHHhcCc
Q psy10767 14 FGVTAYGLLGPSGCGKTTLLSCIVNRL 40 (149)
Q Consensus 14 ~~g~~~~iiG~nGaGKSTLl~~i~g~~ 40 (149)
..|-+++|.|+.||||||+.+.|+..+
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999998643
No 264
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.52 E-value=5.3e-05 Score=54.18 Aligned_cols=27 Identities=26% Similarity=0.266 Sum_probs=23.1
Q ss_pred eCCcEEEEECCCCCCHHHHHHHHhcCc
Q psy10767 14 FGVTAYGLLGPSGCGKTTLLSCIVNRL 40 (149)
Q Consensus 14 ~~g~~~~iiG~nGaGKSTLl~~i~g~~ 40 (149)
.++-+++|+|+.||||||+.+.|+..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999997543
No 265
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.51 E-value=6.4e-05 Score=53.48 Aligned_cols=24 Identities=33% Similarity=0.376 Sum_probs=21.0
Q ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Q psy10767 16 VTAYGLLGPSGCGKTTLLSCIVNR 39 (149)
Q Consensus 16 g~~~~iiG~nGaGKSTLl~~i~g~ 39 (149)
+.+++|+|+.||||||+.+.|+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 567999999999999999998653
No 266
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.51 E-value=5.2e-05 Score=58.58 Aligned_cols=36 Identities=33% Similarity=0.384 Sum_probs=28.4
Q ss_pred eCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECC
Q psy10767 14 FGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSA 51 (149)
Q Consensus 14 ~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g 51 (149)
..+.++.|.||+||||||+.+.|+..+. .+.+.++.
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~--~~~~~Is~ 66 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDN 66 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTT--TCCEEECT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC--CCeEEEec
Confidence 4577899999999999999999986442 35566665
No 267
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=97.51 E-value=5.3e-05 Score=54.68 Aligned_cols=23 Identities=26% Similarity=0.437 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHhcCc
Q psy10767 18 AYGLLGPSGCGKTTLLSCIVNRL 40 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i~g~~ 40 (149)
+++|.|++||||||+.+.|+..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 78999999999999999998743
No 268
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.50 E-value=5.7e-05 Score=53.65 Aligned_cols=24 Identities=29% Similarity=0.331 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHhcCcc
Q psy10767 18 AYGLLGPSGCGKTTLLSCIVNRLR 41 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i~g~~~ 41 (149)
++.|.|++||||||+.+.|+..+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999987553
No 269
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.49 E-value=3.6e-05 Score=59.55 Aligned_cols=38 Identities=32% Similarity=0.468 Sum_probs=30.2
Q ss_pred EEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECC
Q psy10767 12 VIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSA 51 (149)
Q Consensus 12 ~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g 51 (149)
.+..+..+.|.||+|||||||+++|++... .+.+.+++
T Consensus 45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~~~--~~~i~v~~ 82 (301)
T 3cf0_A 45 GMTPSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISIKG 82 (301)
T ss_dssp CCCCCSEEEEECSSSSSHHHHHHHHHHHTT--CEEEEECH
T ss_pred CCCCCceEEEECCCCcCHHHHHHHHHHHhC--CCEEEEEh
Confidence 456778899999999999999999998653 44555553
No 270
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.48 E-value=6.7e-05 Score=53.66 Aligned_cols=23 Identities=26% Similarity=0.375 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHhcCc
Q psy10767 18 AYGLLGPSGCGKTTLLSCIVNRL 40 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i~g~~ 40 (149)
+++|.|+.||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57999999999999999998755
No 271
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.48 E-value=6.7e-05 Score=54.40 Aligned_cols=27 Identities=22% Similarity=0.085 Sum_probs=23.5
Q ss_pred EeCCcEEEEECCCCCCHHHHHHHHhcC
Q psy10767 13 IFGVTAYGLLGPSGCGKTTLLSCIVNR 39 (149)
Q Consensus 13 ~~~g~~~~iiG~nGaGKSTLl~~i~g~ 39 (149)
.++|-+++|.|+.||||||+.+.|+..
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 356889999999999999999999854
No 272
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=97.46 E-value=7.2e-05 Score=57.43 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHhcCc
Q psy10767 18 AYGLLGPSGCGKTTLLSCIVNRL 40 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i~g~~ 40 (149)
.++|+|++|||||||++.++|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 48999999999999999999964
No 273
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=97.46 E-value=6.4e-05 Score=53.44 Aligned_cols=24 Identities=29% Similarity=0.461 Sum_probs=21.7
Q ss_pred EEEEECCCCCCHHHHHHHHhcCcc
Q psy10767 18 AYGLLGPSGCGKTTLLSCIVNRLR 41 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i~g~~~ 41 (149)
.++|+|+.|||||||++.+.+...
T Consensus 50 ~i~vvG~~g~GKSsll~~l~~~~~ 73 (193)
T 2ged_A 50 SIIIAGPQNSGKTSLLTLLTTDSV 73 (193)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 689999999999999999998753
No 274
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.44 E-value=2.5e-05 Score=56.03 Aligned_cols=28 Identities=21% Similarity=0.298 Sum_probs=23.8
Q ss_pred EeCCcEEEEECCCCCCHHHHHHHHhcCc
Q psy10767 13 IFGVTAYGLLGPSGCGKTTLLSCIVNRL 40 (149)
Q Consensus 13 ~~~g~~~~iiG~nGaGKSTLl~~i~g~~ 40 (149)
.+.+-+++|+|+.||||||+.+.|+..+
T Consensus 9 ~~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 9 LRKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3456789999999999999999997643
No 275
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=97.42 E-value=9e-05 Score=51.48 Aligned_cols=23 Identities=39% Similarity=0.520 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHhcCc
Q psy10767 18 AYGLLGPSGCGKTTLLSCIVNRL 40 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i~g~~ 40 (149)
.++|+|+.|+|||||++.+.+-.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 37899999999999999998864
No 276
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.41 E-value=6.4e-05 Score=55.97 Aligned_cols=26 Identities=31% Similarity=0.452 Sum_probs=22.2
Q ss_pred EeCCcEEEEECCCCCCHHHHHHHHhc
Q psy10767 13 IFGVTAYGLLGPSGCGKTTLLSCIVN 38 (149)
Q Consensus 13 ~~~g~~~~iiG~nGaGKSTLl~~i~g 38 (149)
+.+|+.+.+.||+||||||++.++..
T Consensus 73 i~~g~~~~i~g~TGsGKTt~~~~~~~ 98 (235)
T 3llm_A 73 ISQNSVVIIRGATGCGKTTQVPQFIL 98 (235)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHHH
T ss_pred HhcCCEEEEEeCCCCCcHHhHHHHHh
Confidence 45789999999999999998887653
No 277
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=97.41 E-value=7.3e-05 Score=51.59 Aligned_cols=23 Identities=30% Similarity=0.332 Sum_probs=19.8
Q ss_pred EEEECCCCCCHHHHHHHHhcCcc
Q psy10767 19 YGLLGPSGCGKTTLLSCIVNRLR 41 (149)
Q Consensus 19 ~~iiG~nGaGKSTLl~~i~g~~~ 41 (149)
++|+|+.|+|||||++.++|...
T Consensus 5 i~~vG~~~~GKSsli~~l~~~~~ 27 (166)
T 3q72_A 5 VLLLGAPGVGKSALARIFGGVED 27 (166)
T ss_dssp EEEEESTTSSHHHHHHHHCCC--
T ss_pred EEEECCCCCCHHHHHHHHcCccc
Confidence 78999999999999999988653
No 278
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=97.40 E-value=9.9e-05 Score=50.92 Aligned_cols=22 Identities=27% Similarity=0.531 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q psy10767 18 AYGLLGPSGCGKTTLLSCIVNR 39 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i~g~ 39 (149)
.++++|+.|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999999874
No 279
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.40 E-value=0.00013 Score=57.75 Aligned_cols=28 Identities=21% Similarity=0.150 Sum_probs=25.6
Q ss_pred EEeCCcEEEEECCCCCCHHHHHHHHhcC
Q psy10767 12 VIFGVTAYGLLGPSGCGKTTLLSCIVNR 39 (149)
Q Consensus 12 ~~~~g~~~~iiG~nGaGKSTLl~~i~g~ 39 (149)
-+++|+++.|.||+|||||||+..++..
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999999998875
No 280
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=97.40 E-value=8.5e-05 Score=51.15 Aligned_cols=23 Identities=13% Similarity=0.358 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHhcCc
Q psy10767 18 AYGLLGPSGCGKTTLLSCIVNRL 40 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i~g~~ 40 (149)
.++++|+.|+|||||++.+.+-.
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 37899999999999999998753
No 281
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.38 E-value=0.00011 Score=52.31 Aligned_cols=23 Identities=30% Similarity=0.336 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHhcCc
Q psy10767 18 AYGLLGPSGCGKTTLLSCIVNRL 40 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i~g~~ 40 (149)
+++|.|+.||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57999999999999999998644
No 282
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=97.38 E-value=0.00011 Score=50.89 Aligned_cols=22 Identities=36% Similarity=0.409 Sum_probs=19.5
Q ss_pred EEEECCCCCCHHHHHHHHhcCc
Q psy10767 19 YGLLGPSGCGKTTLLSCIVNRL 40 (149)
Q Consensus 19 ~~iiG~nGaGKSTLl~~i~g~~ 40 (149)
++|+|+.|+|||||++.+++..
T Consensus 5 i~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEECCCCCCHHHHHHHHHhcc
Confidence 7899999999999999998754
No 283
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=97.37 E-value=9.7e-05 Score=51.49 Aligned_cols=23 Identities=30% Similarity=0.498 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHhcCc
Q psy10767 18 AYGLLGPSGCGKTTLLSCIVNRL 40 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i~g~~ 40 (149)
.++|+|+.|+|||||++.+.+-.
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999998753
No 284
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=97.36 E-value=0.0001 Score=50.55 Aligned_cols=22 Identities=32% Similarity=0.457 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q psy10767 18 AYGLLGPSGCGKTTLLSCIVNR 39 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i~g~ 39 (149)
.++|+|+.|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999998754
No 285
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.36 E-value=7.4e-05 Score=52.89 Aligned_cols=26 Identities=31% Similarity=0.381 Sum_probs=18.0
Q ss_pred CCcEEEEECCCCCCHHHHHHHHhcCc
Q psy10767 15 GVTAYGLLGPSGCGKTTLLSCIVNRL 40 (149)
Q Consensus 15 ~g~~~~iiG~nGaGKSTLl~~i~g~~ 40 (149)
++.++.|.|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 46789999999999999999997543
No 286
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.36 E-value=0.00011 Score=53.48 Aligned_cols=22 Identities=32% Similarity=0.474 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q psy10767 18 AYGLLGPSGCGKTTLLSCIVNR 39 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i~g~ 39 (149)
.++|+|+.||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999653
No 287
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=97.36 E-value=8.8e-05 Score=50.71 Aligned_cols=22 Identities=23% Similarity=0.450 Sum_probs=19.9
Q ss_pred EEEECCCCCCHHHHHHHHhcCc
Q psy10767 19 YGLLGPSGCGKTTLLSCIVNRL 40 (149)
Q Consensus 19 ~~iiG~nGaGKSTLl~~i~g~~ 40 (149)
++++|+.|||||||++.+.+-.
T Consensus 6 i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 6 LVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHhCc
Confidence 7899999999999999998753
No 288
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=97.36 E-value=0.0001 Score=50.59 Aligned_cols=22 Identities=23% Similarity=0.323 Sum_probs=19.8
Q ss_pred EEEECCCCCCHHHHHHHHhcCc
Q psy10767 19 YGLLGPSGCGKTTLLSCIVNRL 40 (149)
Q Consensus 19 ~~iiG~nGaGKSTLl~~i~g~~ 40 (149)
++++|+.|+|||||++.+.+-.
T Consensus 7 i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 7 VIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHhCc
Confidence 7899999999999999998653
No 289
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=97.36 E-value=0.0001 Score=50.45 Aligned_cols=22 Identities=18% Similarity=0.457 Sum_probs=20.1
Q ss_pred EEEECCCCCCHHHHHHHHhcCc
Q psy10767 19 YGLLGPSGCGKTTLLSCIVNRL 40 (149)
Q Consensus 19 ~~iiG~nGaGKSTLl~~i~g~~ 40 (149)
++++|+.|+|||||++.+.+-.
T Consensus 4 i~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 4 VVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 6899999999999999998764
No 290
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.36 E-value=0.00012 Score=52.92 Aligned_cols=27 Identities=41% Similarity=0.480 Sum_probs=23.5
Q ss_pred cEEEEECCCCCCHHHHHHHHhcCccCC
Q psy10767 17 TAYGLLGPSGCGKTTLLSCIVNRLRLD 43 (149)
Q Consensus 17 ~~~~iiG~nGaGKSTLl~~i~g~~~~~ 43 (149)
..+.|.||+|+|||||+++|+......
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~ 81 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKR 81 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 578899999999999999999876543
No 291
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=97.35 E-value=0.00022 Score=56.06 Aligned_cols=34 Identities=18% Similarity=0.133 Sum_probs=28.6
Q ss_pred cceecceEEEeCCcEEEEECCCCCCHHHHHHHHhc
Q psy10767 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVN 38 (149)
Q Consensus 4 ~~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g 38 (149)
..+|...+.+ .|.-+.|.|+||+||||+...+.+
T Consensus 133 ~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~ 166 (314)
T 1ko7_A 133 TSLHGVLVDV-YGVGVLITGDSGIGKSETALELIK 166 (314)
T ss_dssp EEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred eeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHh
Confidence 3567766666 778899999999999999999887
No 292
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.35 E-value=6.4e-05 Score=58.73 Aligned_cols=30 Identities=20% Similarity=0.329 Sum_probs=25.7
Q ss_pred eCCcEEEEECCCCCCHHHHHHHHhcCccCC
Q psy10767 14 FGVTAYGLLGPSGCGKTTLLSCIVNRLRLD 43 (149)
Q Consensus 14 ~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~ 43 (149)
..+..+.|.||+|+|||||++.+++...+.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~ 72 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKK 72 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 346789999999999999999999977553
No 293
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=97.35 E-value=0.00011 Score=50.74 Aligned_cols=23 Identities=30% Similarity=0.498 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHhcCc
Q psy10767 18 AYGLLGPSGCGKTTLLSCIVNRL 40 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i~g~~ 40 (149)
-++++|+.|+|||||++.+.+-.
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 37899999999999999998765
No 294
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.35 E-value=0.0001 Score=51.65 Aligned_cols=22 Identities=27% Similarity=0.468 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q psy10767 18 AYGLLGPSGCGKTTLLSCIVNR 39 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i~g~ 39 (149)
+++|+|+.||||||+.+.|+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999764
No 295
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=97.34 E-value=0.00011 Score=50.80 Aligned_cols=23 Identities=30% Similarity=0.312 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHhcCc
Q psy10767 18 AYGLLGPSGCGKTTLLSCIVNRL 40 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i~g~~ 40 (149)
.++++|+.|+|||||++.+.+-.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 37899999999999999998653
No 296
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.34 E-value=0.00017 Score=56.41 Aligned_cols=28 Identities=29% Similarity=0.227 Sum_probs=25.4
Q ss_pred EEeCCcEEEEECCCCCCHHHHHHHHhcC
Q psy10767 12 VIFGVTAYGLLGPSGCGKTTLLSCIVNR 39 (149)
Q Consensus 12 ~~~~g~~~~iiG~nGaGKSTLl~~i~g~ 39 (149)
-+++|+++.|.||+|+|||||+..++..
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHH
Confidence 4789999999999999999999988764
No 297
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.34 E-value=0.00012 Score=57.49 Aligned_cols=26 Identities=31% Similarity=0.340 Sum_probs=23.8
Q ss_pred EEEEECCCCCCHHHHHHHHhcCccCC
Q psy10767 18 AYGLLGPSGCGKTTLLSCIVNRLRLD 43 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i~g~~~~~ 43 (149)
.+.|.||+|+|||||++.+++...+.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~ 71 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDK 71 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTS
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhh
Confidence 79999999999999999999987664
No 298
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.33 E-value=0.00012 Score=51.98 Aligned_cols=24 Identities=33% Similarity=0.351 Sum_probs=21.0
Q ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Q psy10767 16 VTAYGLLGPSGCGKTTLLSCIVNR 39 (149)
Q Consensus 16 g~~~~iiG~nGaGKSTLl~~i~g~ 39 (149)
..+++|.|+.||||||+.+.|+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999753
No 299
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.33 E-value=0.00015 Score=53.23 Aligned_cols=26 Identities=31% Similarity=0.487 Sum_probs=22.5
Q ss_pred CCcEEEEECCCCCCHHHHHHHHhcCc
Q psy10767 15 GVTAYGLLGPSGCGKTTLLSCIVNRL 40 (149)
Q Consensus 15 ~g~~~~iiG~nGaGKSTLl~~i~g~~ 40 (149)
.+-++.|+|+.||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 46679999999999999999997644
No 300
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=97.33 E-value=0.00011 Score=50.47 Aligned_cols=21 Identities=33% Similarity=0.506 Sum_probs=19.4
Q ss_pred EEEECCCCCCHHHHHHHHhcC
Q psy10767 19 YGLLGPSGCGKTTLLSCIVNR 39 (149)
Q Consensus 19 ~~iiG~nGaGKSTLl~~i~g~ 39 (149)
++++|+.|+|||||++.+.+-
T Consensus 6 i~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 6 LVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEECSTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999999864
No 301
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=97.33 E-value=0.00012 Score=55.13 Aligned_cols=23 Identities=26% Similarity=0.403 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHhcCc
Q psy10767 18 AYGLLGPSGCGKTTLLSCIVNRL 40 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i~g~~ 40 (149)
.++|+|.+|+|||||++.|+|..
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47999999999999999999864
No 302
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=97.33 E-value=0.00012 Score=51.15 Aligned_cols=23 Identities=43% Similarity=0.548 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHhcCc
Q psy10767 18 AYGLLGPSGCGKTTLLSCIVNRL 40 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i~g~~ 40 (149)
.++|+|+.|||||||++.+.+-.
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47999999999999999998754
No 303
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.33 E-value=0.00014 Score=50.76 Aligned_cols=22 Identities=27% Similarity=0.226 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q psy10767 18 AYGLLGPSGCGKTTLLSCIVNR 39 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i~g~ 39 (149)
+++|.|+.||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999764
No 304
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=97.32 E-value=0.0001 Score=52.31 Aligned_cols=23 Identities=30% Similarity=0.606 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHhcCc
Q psy10767 18 AYGLLGPSGCGKTTLLSCIVNRL 40 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i~g~~ 40 (149)
.++|+|+.|+|||||++.+.+-.
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 1svi_A 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
No 305
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=97.32 E-value=0.00012 Score=51.05 Aligned_cols=23 Identities=35% Similarity=0.502 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHhcCc
Q psy10767 18 AYGLLGPSGCGKTTLLSCIVNRL 40 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i~g~~ 40 (149)
-++|+|+.|+|||||++.+.+-.
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37899999999999999998653
No 306
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.32 E-value=0.00012 Score=50.47 Aligned_cols=22 Identities=27% Similarity=0.412 Sum_probs=19.8
Q ss_pred EEEECCCCCCHHHHHHHHhcCc
Q psy10767 19 YGLLGPSGCGKTTLLSCIVNRL 40 (149)
Q Consensus 19 ~~iiG~nGaGKSTLl~~i~g~~ 40 (149)
++++|+.|+|||||++.+.+-.
T Consensus 6 i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 6 LVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 7899999999999999998654
No 307
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=97.32 E-value=0.00011 Score=51.96 Aligned_cols=23 Identities=35% Similarity=0.624 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHhcCc
Q psy10767 18 AYGLLGPSGCGKTTLLSCIVNRL 40 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i~g~~ 40 (149)
.++|+|+.|||||||++.+.+-.
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 58999999999999999998864
No 308
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.32 E-value=0.00016 Score=52.19 Aligned_cols=26 Identities=35% Similarity=0.469 Sum_probs=22.2
Q ss_pred CCcEEEEECCCCCCHHHHHHHHhcCc
Q psy10767 15 GVTAYGLLGPSGCGKTTLLSCIVNRL 40 (149)
Q Consensus 15 ~g~~~~iiG~nGaGKSTLl~~i~g~~ 40 (149)
.+-+++|+|+.||||||+.+.|+..+
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 44589999999999999999997643
No 309
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=97.31 E-value=0.00011 Score=50.74 Aligned_cols=22 Identities=41% Similarity=0.530 Sum_probs=20.0
Q ss_pred EEEECCCCCCHHHHHHHHhcCc
Q psy10767 19 YGLLGPSGCGKTTLLSCIVNRL 40 (149)
Q Consensus 19 ~~iiG~nGaGKSTLl~~i~g~~ 40 (149)
++|+|+.|+|||||++.+.+-.
T Consensus 6 i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 6 ILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEECcCCCCHHHHHHHHHhCC
Confidence 7899999999999999998754
No 310
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.31 E-value=0.00014 Score=53.74 Aligned_cols=26 Identities=27% Similarity=0.344 Sum_probs=21.5
Q ss_pred eCCcEEEEECCCCCCHHHHHHHHhcC
Q psy10767 14 FGVTAYGLLGPSGCGKTTLLSCIVNR 39 (149)
Q Consensus 14 ~~g~~~~iiG~nGaGKSTLl~~i~g~ 39 (149)
.++-++.|+|+.||||||+.+.|+..
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~ 30 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTH 30 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHH
Confidence 45568999999999999999999853
No 311
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=97.31 E-value=0.00018 Score=50.16 Aligned_cols=25 Identities=32% Similarity=0.413 Sum_probs=21.6
Q ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Q psy10767 15 GVTAYGLLGPSGCGKTTLLSCIVNR 39 (149)
Q Consensus 15 ~g~~~~iiG~nGaGKSTLl~~i~g~ 39 (149)
+.-.++|+|+.|+|||||++.+.+-
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3446899999999999999999874
No 312
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.31 E-value=0.00015 Score=52.34 Aligned_cols=25 Identities=32% Similarity=0.383 Sum_probs=21.4
Q ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Q psy10767 15 GVTAYGLLGPSGCGKTTLLSCIVNR 39 (149)
Q Consensus 15 ~g~~~~iiG~nGaGKSTLl~~i~g~ 39 (149)
..-+++|.|+.||||||+.+.|+..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999999999743
No 313
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=97.31 E-value=0.00014 Score=54.72 Aligned_cols=24 Identities=25% Similarity=0.346 Sum_probs=21.1
Q ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Q psy10767 16 VTAYGLLGPSGCGKTTLLSCIVNR 39 (149)
Q Consensus 16 g~~~~iiG~nGaGKSTLl~~i~g~ 39 (149)
--+++|.|+.||||||+.+.|+..
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~~ 45 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQL 45 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHH
Confidence 347999999999999999999763
No 314
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.31 E-value=0.00014 Score=52.99 Aligned_cols=23 Identities=35% Similarity=0.424 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHhcCc
Q psy10767 18 AYGLLGPSGCGKTTLLSCIVNRL 40 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i~g~~ 40 (149)
.++|+|+.||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999996533
No 315
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=97.30 E-value=0.00014 Score=51.47 Aligned_cols=24 Identities=33% Similarity=0.393 Sum_probs=21.5
Q ss_pred EEEEECCCCCCHHHHHHHHhcCcc
Q psy10767 18 AYGLLGPSGCGKTTLLSCIVNRLR 41 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i~g~~~ 41 (149)
.++|+|+.|+|||||++.+.|...
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHhhcc
Confidence 379999999999999999998764
No 316
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.30 E-value=0.00016 Score=50.68 Aligned_cols=23 Identities=26% Similarity=0.284 Sum_probs=20.7
Q ss_pred cEEEEECCCCCCHHHHHHHHhcC
Q psy10767 17 TAYGLLGPSGCGKTTLLSCIVNR 39 (149)
Q Consensus 17 ~~~~iiG~nGaGKSTLl~~i~g~ 39 (149)
++++|+|+.||||||+.+.|+..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999999753
No 317
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=97.30 E-value=0.00012 Score=51.08 Aligned_cols=22 Identities=23% Similarity=0.409 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q psy10767 18 AYGLLGPSGCGKTTLLSCIVNR 39 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i~g~ 39 (149)
.++|+|+.|+|||||++.+.+-
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999999876
No 318
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=97.29 E-value=0.00012 Score=51.59 Aligned_cols=22 Identities=27% Similarity=0.368 Sum_probs=20.2
Q ss_pred EEEECCCCCCHHHHHHHHhcCc
Q psy10767 19 YGLLGPSGCGKTTLLSCIVNRL 40 (149)
Q Consensus 19 ~~iiG~nGaGKSTLl~~i~g~~ 40 (149)
++|+|+.|+|||||++.+.+-.
T Consensus 4 i~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 4 IIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHhCcC
Confidence 6899999999999999999864
No 319
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.29 E-value=0.00012 Score=53.40 Aligned_cols=27 Identities=37% Similarity=0.550 Sum_probs=23.6
Q ss_pred CCcEEEEECCCCCCHHHHHHHHhcCcc
Q psy10767 15 GVTAYGLLGPSGCGKTTLLSCIVNRLR 41 (149)
Q Consensus 15 ~g~~~~iiG~nGaGKSTLl~~i~g~~~ 41 (149)
.+..+.|.||+|+|||||++.++....
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 467889999999999999999987654
No 320
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.28 E-value=8e-05 Score=52.31 Aligned_cols=23 Identities=35% Similarity=0.375 Sum_probs=20.4
Q ss_pred CcEEEEECCCCCCHHHHHHHHhc
Q psy10767 16 VTAYGLLGPSGCGKTTLLSCIVN 38 (149)
Q Consensus 16 g~~~~iiG~nGaGKSTLl~~i~g 38 (149)
.-.++|+|++|+|||||++.+.+
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 34689999999999999999985
No 321
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=97.28 E-value=0.00014 Score=51.44 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHhcCc
Q psy10767 18 AYGLLGPSGCGKTTLLSCIVNRL 40 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i~g~~ 40 (149)
.++|+|+.|+|||||++.+.+-.
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999998863
No 322
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=97.27 E-value=0.00014 Score=51.06 Aligned_cols=23 Identities=22% Similarity=0.426 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHhcCc
Q psy10767 18 AYGLLGPSGCGKTTLLSCIVNRL 40 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i~g~~ 40 (149)
-++|+|+.|+|||||++.+.+-.
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 37899999999999999998753
No 323
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=97.27 E-value=0.00016 Score=50.33 Aligned_cols=23 Identities=30% Similarity=0.561 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHhcCc
Q psy10767 18 AYGLLGPSGCGKTTLLSCIVNRL 40 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i~g~~ 40 (149)
.++|+|+.|+|||||++.+.+-.
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGGG
T ss_pred EEEEECcCCCCHHHHHHHHHhCc
Confidence 37899999999999999998753
No 324
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=97.27 E-value=0.00015 Score=49.97 Aligned_cols=22 Identities=36% Similarity=0.480 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q psy10767 18 AYGLLGPSGCGKTTLLSCIVNR 39 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i~g~ 39 (149)
.++|+|+.|+|||||++.+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999999864
No 325
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=97.27 E-value=0.00014 Score=51.67 Aligned_cols=23 Identities=43% Similarity=0.530 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHhcCc
Q psy10767 18 AYGLLGPSGCGKTTLLSCIVNRL 40 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i~g~~ 40 (149)
.++|+|+.|+|||||++.+.+-.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999998743
No 326
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=97.26 E-value=0.00015 Score=51.08 Aligned_cols=22 Identities=36% Similarity=0.510 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q psy10767 18 AYGLLGPSGCGKTTLLSCIVNR 39 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i~g~ 39 (149)
.++|+|+.|+|||||++.+.+-
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999999864
No 327
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=97.26 E-value=0.00013 Score=58.48 Aligned_cols=21 Identities=29% Similarity=0.618 Sum_probs=19.8
Q ss_pred EEEECCCCCCHHHHHHHHhcC
Q psy10767 19 YGLLGPSGCGKTTLLSCIVNR 39 (149)
Q Consensus 19 ~~iiG~nGaGKSTLl~~i~g~ 39 (149)
++|+|++|+|||||++.|++.
T Consensus 4 v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 4 VGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp EEEECCSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 689999999999999999985
No 328
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=97.26 E-value=0.00018 Score=52.52 Aligned_cols=23 Identities=30% Similarity=0.537 Sum_probs=20.9
Q ss_pred cEEEEECCCCCCHHHHHHHHhcC
Q psy10767 17 TAYGLLGPSGCGKTTLLSCIVNR 39 (149)
Q Consensus 17 ~~~~iiG~nGaGKSTLl~~i~g~ 39 (149)
-+++|+|..||||||+.+.|+..
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999999999999864
No 329
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.25 E-value=0.00042 Score=56.49 Aligned_cols=36 Identities=17% Similarity=0.072 Sum_probs=29.0
Q ss_pred ecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCccC
Q psy10767 7 SSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRL 42 (149)
Q Consensus 7 ~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~ 42 (149)
+.+.--+.+|+++.|.|++|+|||||+..++.....
T Consensus 191 D~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~ 226 (444)
T 2q6t_A 191 DQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAAL 226 (444)
T ss_dssp HHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred hhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 333334789999999999999999999988876543
No 330
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=97.25 E-value=0.00016 Score=54.91 Aligned_cols=23 Identities=39% Similarity=0.618 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHhcCc
Q psy10767 18 AYGLLGPSGCGKTTLLSCIVNRL 40 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i~g~~ 40 (149)
.++|+|..|||||||++.++|..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 47899999999999999999974
No 331
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.25 E-value=0.00014 Score=53.47 Aligned_cols=26 Identities=19% Similarity=0.167 Sum_probs=21.7
Q ss_pred CCcEEEEECCCCCCHHHHHHHHhcCc
Q psy10767 15 GVTAYGLLGPSGCGKTTLLSCIVNRL 40 (149)
Q Consensus 15 ~g~~~~iiG~nGaGKSTLl~~i~g~~ 40 (149)
.+-++.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34568999999999999999997543
No 332
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=97.25 E-value=0.00016 Score=50.02 Aligned_cols=22 Identities=36% Similarity=0.434 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q psy10767 18 AYGLLGPSGCGKTTLLSCIVNR 39 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i~g~ 39 (149)
.++++|+.|+|||||++.+.+-
T Consensus 9 ~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999764
No 333
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=97.24 E-value=0.00018 Score=55.94 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHhcCc
Q psy10767 18 AYGLLGPSGCGKTTLLSCIVNRL 40 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i~g~~ 40 (149)
.++|+|.+|+|||||++.+.|..
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~~ 31 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGVK 31 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 58999999999999999999863
No 334
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.24 E-value=0.00015 Score=51.56 Aligned_cols=22 Identities=27% Similarity=0.368 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q psy10767 18 AYGLLGPSGCGKTTLLSCIVNR 39 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i~g~ 39 (149)
+++|+|+.||||||+.+.|+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999754
No 335
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=97.23 E-value=0.00019 Score=55.84 Aligned_cols=24 Identities=25% Similarity=0.433 Sum_probs=21.6
Q ss_pred cEEEEECCCCCCHHHHHHHHhcCc
Q psy10767 17 TAYGLLGPSGCGKTTLLSCIVNRL 40 (149)
Q Consensus 17 ~~~~iiG~nGaGKSTLl~~i~g~~ 40 (149)
..++|+|+.|||||||++.|.|..
T Consensus 11 g~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 468999999999999999999863
No 336
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=97.23 E-value=0.00017 Score=49.56 Aligned_cols=21 Identities=29% Similarity=0.308 Sum_probs=19.0
Q ss_pred EEEECCCCCCHHHHHHHHhcC
Q psy10767 19 YGLLGPSGCGKTTLLSCIVNR 39 (149)
Q Consensus 19 ~~iiG~nGaGKSTLl~~i~g~ 39 (149)
++++|+.|+|||||++.+.+-
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 689999999999999999753
No 337
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=97.23 E-value=0.00017 Score=50.49 Aligned_cols=23 Identities=22% Similarity=0.303 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHhcCc
Q psy10767 18 AYGLLGPSGCGKTTLLSCIVNRL 40 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i~g~~ 40 (149)
.++|+|+.|+|||||++.+.+-.
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhhCC
Confidence 47999999999999999998643
No 338
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.22 E-value=0.00018 Score=50.27 Aligned_cols=23 Identities=39% Similarity=0.456 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHhcCc
Q psy10767 18 AYGLLGPSGCGKTTLLSCIVNRL 40 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i~g~~ 40 (149)
.++|+|+.|+|||||++.+.+-.
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47999999999999999998754
No 339
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=97.22 E-value=0.00017 Score=50.99 Aligned_cols=23 Identities=22% Similarity=0.424 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHhcCc
Q psy10767 18 AYGLLGPSGCGKTTLLSCIVNRL 40 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i~g~~ 40 (149)
.++++|+.|+|||||++.+.+-.
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999998653
No 340
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.21 E-value=0.00023 Score=53.91 Aligned_cols=25 Identities=24% Similarity=0.315 Sum_probs=22.1
Q ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Q psy10767 15 GVTAYGLLGPSGCGKTTLLSCIVNR 39 (149)
Q Consensus 15 ~g~~~~iiG~nGaGKSTLl~~i~g~ 39 (149)
.+.++.|+|++||||||+.+.|+..
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999865
No 341
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=97.21 E-value=0.00018 Score=49.99 Aligned_cols=23 Identities=30% Similarity=0.556 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHhcCc
Q psy10767 18 AYGLLGPSGCGKTTLLSCIVNRL 40 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i~g~~ 40 (149)
.++|+|+.|+|||||++.+.+-.
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999998754
No 342
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=97.21 E-value=0.00018 Score=55.28 Aligned_cols=23 Identities=35% Similarity=0.559 Sum_probs=20.6
Q ss_pred CcEEEEECCCCCCHHHHHHHHhc
Q psy10767 16 VTAYGLLGPSGCGKTTLLSCIVN 38 (149)
Q Consensus 16 g~~~~iiG~nGaGKSTLl~~i~g 38 (149)
.-+++|.|+.||||||+.+.|..
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999999983
No 343
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=97.21 E-value=0.00016 Score=50.22 Aligned_cols=22 Identities=27% Similarity=0.452 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q psy10767 18 AYGLLGPSGCGKTTLLSCIVNR 39 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i~g~ 39 (149)
.++|+|+.|+|||||++.+.+-
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999864
No 344
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=97.20 E-value=0.00016 Score=55.06 Aligned_cols=22 Identities=32% Similarity=0.468 Sum_probs=19.9
Q ss_pred EEEECCCCCCHHHHHHHHhcCc
Q psy10767 19 YGLLGPSGCGKTTLLSCIVNRL 40 (149)
Q Consensus 19 ~~iiG~nGaGKSTLl~~i~g~~ 40 (149)
++|+|++|+|||||++.|.+..
T Consensus 11 I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 11 LMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7899999999999999987753
No 345
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=97.20 E-value=9e-05 Score=57.41 Aligned_cols=26 Identities=19% Similarity=0.268 Sum_probs=19.6
Q ss_pred CCcEEEEECCCCCCHHHHHHHHhcCc
Q psy10767 15 GVTAYGLLGPSGCGKTTLLSCIVNRL 40 (149)
Q Consensus 15 ~g~~~~iiG~nGaGKSTLl~~i~g~~ 40 (149)
+.-++||.|++||||||+.+.|...+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 34589999999999999999998754
No 346
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=97.19 E-value=9e-05 Score=61.31 Aligned_cols=39 Identities=31% Similarity=0.563 Sum_probs=31.1
Q ss_pred EEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEE
Q psy10767 11 TVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISL 49 (149)
Q Consensus 11 ~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~ 49 (149)
+.+-+|+..+|+|++|+|||||++.|+.......+.+.+
T Consensus 146 ~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~V 184 (473)
T 1sky_E 146 APYIKGGKIGLFGGAGVGKTVLIQELIHNIAQEHGGISV 184 (473)
T ss_dssp SCEETTCEEEEECCSSSCHHHHHHHHHHHHHHHTCCCEE
T ss_pred hhhccCCEEEEECCCCCCccHHHHHHHhhhhhccCcEEE
Confidence 456789999999999999999999998876544444443
No 347
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=97.19 E-value=0.00016 Score=52.10 Aligned_cols=22 Identities=36% Similarity=0.427 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q psy10767 18 AYGLLGPSGCGKTTLLSCIVNR 39 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i~g~ 39 (149)
.++|+|++|+|||||++.++|.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 4799999999999999999764
No 348
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=97.19 E-value=0.00023 Score=52.56 Aligned_cols=23 Identities=26% Similarity=0.466 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHhcCc
Q psy10767 18 AYGLLGPSGCGKTTLLSCIVNRL 40 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i~g~~ 40 (149)
++.|.|+.||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999997543
No 349
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=97.18 E-value=0.0002 Score=49.98 Aligned_cols=23 Identities=35% Similarity=0.492 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHhcCc
Q psy10767 18 AYGLLGPSGCGKTTLLSCIVNRL 40 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i~g~~ 40 (149)
.++|+|+.|+|||||++.+.+-.
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 37999999999999999998764
No 350
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=97.18 E-value=0.00022 Score=54.15 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHhcCc
Q psy10767 18 AYGLLGPSGCGKTTLLSCIVNRL 40 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i~g~~ 40 (149)
.++|+|..|||||||++.++|..
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 47999999999999999999964
No 351
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=97.17 E-value=0.00023 Score=50.22 Aligned_cols=26 Identities=27% Similarity=0.230 Sum_probs=22.0
Q ss_pred CCcEEEEECCCCCCHHHHHHHHhcCc
Q psy10767 15 GVTAYGLLGPSGCGKTTLLSCIVNRL 40 (149)
Q Consensus 15 ~g~~~~iiG~nGaGKSTLl~~i~g~~ 40 (149)
+.=.++++|+.|+|||||++.+.+-.
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 34458999999999999999998754
No 352
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=97.17 E-value=0.0002 Score=54.73 Aligned_cols=23 Identities=35% Similarity=0.580 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHhcCc
Q psy10767 18 AYGLLGPSGCGKTTLLSCIVNRL 40 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i~g~~ 40 (149)
.++|+|..|||||||++.++|..
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999964
No 353
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.17 E-value=0.0002 Score=51.88 Aligned_cols=23 Identities=30% Similarity=0.509 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHhcCc
Q psy10767 18 AYGLLGPSGCGKTTLLSCIVNRL 40 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i~g~~ 40 (149)
.++|+|+.|+|||||++.+.+-.
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998865
No 354
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=97.16 E-value=0.00021 Score=51.01 Aligned_cols=22 Identities=23% Similarity=0.359 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q psy10767 18 AYGLLGPSGCGKTTLLSCIVNR 39 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i~g~ 39 (149)
.++|+|+.|+|||||++.+.+-
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999999865
No 355
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=97.16 E-value=0.00021 Score=50.59 Aligned_cols=23 Identities=35% Similarity=0.478 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHhcCc
Q psy10767 18 AYGLLGPSGCGKTTLLSCIVNRL 40 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i~g~~ 40 (149)
.++|+|+.|+|||||++.+.+-.
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999998754
No 356
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.16 E-value=0.00028 Score=52.96 Aligned_cols=25 Identities=28% Similarity=0.300 Sum_probs=21.9
Q ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Q psy10767 15 GVTAYGLLGPSGCGKTTLLSCIVNR 39 (149)
Q Consensus 15 ~g~~~~iiG~nGaGKSTLl~~i~g~ 39 (149)
++-+++|+|+.||||||+.+.|+..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 5568999999999999999999743
No 357
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=97.15 E-value=0.00022 Score=50.56 Aligned_cols=23 Identities=30% Similarity=0.353 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHhcCc
Q psy10767 18 AYGLLGPSGCGKTTLLSCIVNRL 40 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i~g~~ 40 (149)
-++|+|+.|+|||||++.+.+-.
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998754
No 358
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=97.15 E-value=0.0002 Score=50.36 Aligned_cols=23 Identities=26% Similarity=0.575 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHhcCc
Q psy10767 18 AYGLLGPSGCGKTTLLSCIVNRL 40 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i~g~~ 40 (149)
.++|+|+.|+|||||++.+.+-.
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999998653
No 359
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=97.15 E-value=0.00023 Score=51.00 Aligned_cols=23 Identities=43% Similarity=0.605 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHhcCc
Q psy10767 18 AYGLLGPSGCGKTTLLSCIVNRL 40 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i~g~~ 40 (149)
.++|+|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47999999999999999998754
No 360
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=97.15 E-value=0.00022 Score=53.56 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHhcCc
Q psy10767 18 AYGLLGPSGCGKTTLLSCIVNRL 40 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i~g~~ 40 (149)
.++|+|+.|||||||++.|.|-.
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998854
No 361
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.13 E-value=0.00021 Score=50.73 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q psy10767 18 AYGLLGPSGCGKTTLLSCIVNR 39 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i~g~ 39 (149)
-++|+|+.|+|||||++.+.+-
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHcC
Confidence 4899999999999999999874
No 362
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=97.13 E-value=0.00024 Score=49.70 Aligned_cols=22 Identities=27% Similarity=0.371 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q psy10767 18 AYGLLGPSGCGKTTLLSCIVNR 39 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i~g~ 39 (149)
.++++|+.|+|||||++.+.+-
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999999754
No 363
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=97.13 E-value=0.00022 Score=50.48 Aligned_cols=22 Identities=36% Similarity=0.608 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q psy10767 18 AYGLLGPSGCGKTTLLSCIVNR 39 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i~g~ 39 (149)
.++|+|+.|+|||||++.+.+-
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3789999999999999999875
No 364
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=97.13 E-value=0.00024 Score=51.73 Aligned_cols=23 Identities=35% Similarity=0.624 Sum_probs=20.7
Q ss_pred cEEEEECCCCCCHHHHHHHHhcC
Q psy10767 17 TAYGLLGPSGCGKTTLLSCIVNR 39 (149)
Q Consensus 17 ~~~~iiG~nGaGKSTLl~~i~g~ 39 (149)
-.++|+|+.|+|||||++.+++.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 36899999999999999999875
No 365
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=97.12 E-value=0.00028 Score=50.51 Aligned_cols=23 Identities=26% Similarity=0.326 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHhcCc
Q psy10767 18 AYGLLGPSGCGKTTLLSCIVNRL 40 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i~g~~ 40 (149)
-++|+|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37999999999999999998754
No 366
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=97.12 E-value=0.00032 Score=49.22 Aligned_cols=22 Identities=23% Similarity=0.421 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q psy10767 18 AYGLLGPSGCGKTTLLSCIVNR 39 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i~g~ 39 (149)
.++|+|+.|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3799999999999999999865
No 367
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=97.12 E-value=0.00022 Score=50.81 Aligned_cols=23 Identities=30% Similarity=0.533 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHhcCc
Q psy10767 18 AYGLLGPSGCGKTTLLSCIVNRL 40 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i~g~~ 40 (149)
.++|+|+.|+|||||++.+.+-.
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 37999999999999999998653
No 368
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=97.12 E-value=0.00026 Score=50.56 Aligned_cols=23 Identities=26% Similarity=0.485 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHhcCc
Q psy10767 18 AYGLLGPSGCGKTTLLSCIVNRL 40 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i~g~~ 40 (149)
-++|+|+.|+|||||++.+.+-.
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999998754
No 369
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.11 E-value=0.00027 Score=53.91 Aligned_cols=29 Identities=17% Similarity=0.302 Sum_probs=22.6
Q ss_pred cEEEEECCCCCCHHHHHHHHhcCccCCcc
Q psy10767 17 TAYGLLGPSGCGKTTLLSCIVNRLRLDHG 45 (149)
Q Consensus 17 ~~~~iiG~nGaGKSTLl~~i~g~~~~~~G 45 (149)
-.++++|.+|+|||||+|.|.|......|
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~ 128 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVG 128 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccC
Confidence 36899999999999999999997654444
No 370
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=97.11 E-value=0.00026 Score=50.83 Aligned_cols=21 Identities=33% Similarity=0.518 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q psy10767 18 AYGLLGPSGCGKTTLLSCIVN 38 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i~g 38 (149)
.++|+|++|+|||||++.+.|
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 389999999999999999986
No 371
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=97.10 E-value=0.00023 Score=51.07 Aligned_cols=23 Identities=30% Similarity=0.274 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHhcCc
Q psy10767 18 AYGLLGPSGCGKTTLLSCIVNRL 40 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i~g~~ 40 (149)
.++|+|+.|+|||||++.+.+-.
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 47999999999999999998764
No 372
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.10 E-value=0.00017 Score=55.94 Aligned_cols=28 Identities=29% Similarity=0.342 Sum_probs=23.6
Q ss_pred CcEEEEECCCCCCHHHHHHHHhcCccCC
Q psy10767 16 VTAYGLLGPSGCGKTTLLSCIVNRLRLD 43 (149)
Q Consensus 16 g~~~~iiG~nGaGKSTLl~~i~g~~~~~ 43 (149)
+..+.|.||+|+|||||++.|++.....
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~~ 64 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKR 64 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 3468899999999999999999876543
No 373
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=97.10 E-value=0.00028 Score=50.03 Aligned_cols=22 Identities=27% Similarity=0.268 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q psy10767 18 AYGLLGPSGCGKTTLLSCIVNR 39 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i~g~ 39 (149)
.++|+|+.|+|||||++.+.+-
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999854
No 374
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=97.10 E-value=0.00029 Score=50.05 Aligned_cols=23 Identities=22% Similarity=0.280 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHhcCc
Q psy10767 18 AYGLLGPSGCGKTTLLSCIVNRL 40 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i~g~~ 40 (149)
.++|+|+.|+|||||++.+.+-.
T Consensus 19 ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 19 QVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999998853
No 375
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=97.09 E-value=0.00028 Score=50.21 Aligned_cols=23 Identities=30% Similarity=0.587 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHhcCc
Q psy10767 18 AYGLLGPSGCGKTTLLSCIVNRL 40 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i~g~~ 40 (149)
.++|+|+.|+|||||++.+.+-.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 37899999999999999998754
No 376
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=97.09 E-value=0.00021 Score=50.73 Aligned_cols=23 Identities=26% Similarity=0.248 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHhcCc
Q psy10767 18 AYGLLGPSGCGKTTLLSCIVNRL 40 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i~g~~ 40 (149)
.++|+|+.|+|||||++.+.+-.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999998865
No 377
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=97.09 E-value=0.00012 Score=53.16 Aligned_cols=23 Identities=26% Similarity=0.460 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHhcCc
Q psy10767 18 AYGLLGPSGCGKTTLLSCIVNRL 40 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i~g~~ 40 (149)
.++|+|+.|+|||||++.|.+-.
T Consensus 31 ~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 31 EIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp EEEEEESCHHHHHHHHHHHTTCS
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999875
No 378
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=97.08 E-value=0.0003 Score=51.71 Aligned_cols=23 Identities=17% Similarity=0.309 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHhcCc
Q psy10767 18 AYGLLGPSGCGKTTLLSCIVNRL 40 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i~g~~ 40 (149)
.++|+|+.|+|||||++.+.+-.
T Consensus 31 kI~vvG~~~vGKSsLin~l~~~~ 53 (228)
T 2qu8_A 31 TIILSGAPNVGKSSFMNIVSRAN 53 (228)
T ss_dssp EEEEECSTTSSHHHHHHHHTTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998864
No 379
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=97.08 E-value=0.00033 Score=53.63 Aligned_cols=22 Identities=23% Similarity=0.286 Sum_probs=20.1
Q ss_pred cEEEEECCCCCCHHHHHHHHhc
Q psy10767 17 TAYGLLGPSGCGKTTLLSCIVN 38 (149)
Q Consensus 17 ~~~~iiG~nGaGKSTLl~~i~g 38 (149)
.++.|+|++||||||+.+.|+.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999986
No 380
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=97.08 E-value=0.00029 Score=49.22 Aligned_cols=23 Identities=26% Similarity=0.297 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHhcCc
Q psy10767 18 AYGLLGPSGCGKTTLLSCIVNRL 40 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i~g~~ 40 (149)
.++|+|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKssl~~~~~~~~ 32 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISYTSNT 32 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998653
No 381
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=97.08 E-value=0.00026 Score=49.62 Aligned_cols=21 Identities=29% Similarity=0.422 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q psy10767 18 AYGLLGPSGCGKTTLLSCIVN 38 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i~g 38 (149)
.++|+|+.|+|||||++.+.+
T Consensus 8 ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 478999999999999999984
No 382
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.08 E-value=0.00029 Score=49.82 Aligned_cols=23 Identities=26% Similarity=0.283 Sum_probs=20.4
Q ss_pred cEEEEECCCCCCHHHHHHHHhcC
Q psy10767 17 TAYGLLGPSGCGKTTLLSCIVNR 39 (149)
Q Consensus 17 ~~~~iiG~nGaGKSTLl~~i~g~ 39 (149)
-.++|+|+.|+|||||++.+.+-
T Consensus 17 ~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999854
No 383
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.08 E-value=0.0003 Score=51.36 Aligned_cols=22 Identities=32% Similarity=0.360 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q psy10767 18 AYGLLGPSGCGKTTLLSCIVNR 39 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i~g~ 39 (149)
.++|.|+.||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEK 23 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3689999999999999999753
No 384
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.08 E-value=0.00025 Score=50.39 Aligned_cols=23 Identities=26% Similarity=0.348 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHhcCc
Q psy10767 18 AYGLLGPSGCGKTTLLSCIVNRL 40 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i~g~~ 40 (149)
.++|+|+.|+|||||++.+.+-.
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 48999999999999999998754
No 385
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=97.08 E-value=0.00029 Score=50.14 Aligned_cols=23 Identities=26% Similarity=0.309 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHhcCc
Q psy10767 18 AYGLLGPSGCGKTTLLSCIVNRL 40 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i~g~~ 40 (149)
.++|+|+.|+|||||++.+.+-.
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999998753
No 386
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=97.07 E-value=0.00029 Score=50.64 Aligned_cols=23 Identities=26% Similarity=0.559 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHhcCc
Q psy10767 18 AYGLLGPSGCGKTTLLSCIVNRL 40 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i~g~~ 40 (149)
-++|+|+.|+|||||++.+.+-.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIENK 49 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC--
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47999999999999999998653
No 387
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=97.07 E-value=0.00028 Score=54.31 Aligned_cols=24 Identities=29% Similarity=0.409 Sum_probs=21.8
Q ss_pred EEEEECCCCCCHHHHHHHHhcCcc
Q psy10767 18 AYGLLGPSGCGKTTLLSCIVNRLR 41 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i~g~~~ 41 (149)
.++|+|+.|||||||++.|+|...
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~~ 49 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRDF 49 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSCC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCCc
Confidence 589999999999999999999753
No 388
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.07 E-value=0.00041 Score=48.43 Aligned_cols=27 Identities=26% Similarity=0.437 Sum_probs=22.6
Q ss_pred CCcEEEEECCCCCCHHHHHHHHhcCcc
Q psy10767 15 GVTAYGLLGPSGCGKTTLLSCIVNRLR 41 (149)
Q Consensus 15 ~g~~~~iiG~nGaGKSTLl~~i~g~~~ 41 (149)
.+..+.|.||.|+|||||++.++....
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 345678999999999999999987653
No 389
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.07 E-value=0.00026 Score=51.36 Aligned_cols=22 Identities=32% Similarity=0.481 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q psy10767 18 AYGLLGPSGCGKTTLLSCIVNR 39 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i~g~ 39 (149)
.++|+|+.|+|||||++.+.+-
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4799999999999999988754
No 390
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=97.06 E-value=0.00036 Score=50.53 Aligned_cols=23 Identities=39% Similarity=0.423 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHhcCc
Q psy10767 18 AYGLLGPSGCGKTTLLSCIVNRL 40 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i~g~~ 40 (149)
.++|+|+.|+|||||++.+.+-.
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999998754
No 391
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=97.06 E-value=0.00031 Score=49.62 Aligned_cols=23 Identities=30% Similarity=0.481 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHhcCc
Q psy10767 18 AYGLLGPSGCGKTTLLSCIVNRL 40 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i~g~~ 40 (149)
.++|+|+.|+|||||++.+.+-.
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999998753
No 392
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.06 E-value=0.00032 Score=50.08 Aligned_cols=22 Identities=23% Similarity=0.588 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q psy10767 18 AYGLLGPSGCGKTTLLSCIVNR 39 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i~g~ 39 (149)
-++|+|+.|+|||||++.+.+-
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999865
No 393
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=97.05 E-value=0.00035 Score=49.99 Aligned_cols=24 Identities=17% Similarity=0.391 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHhcCcc
Q psy10767 18 AYGLLGPSGCGKTTLLSCIVNRLR 41 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i~g~~~ 41 (149)
.++|+|+.|+|||||++.+.+-..
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~~ 45 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKMS 45 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHHhcCC
Confidence 489999999999999999998654
No 394
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=97.05 E-value=0.00032 Score=49.83 Aligned_cols=22 Identities=32% Similarity=0.437 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q psy10767 18 AYGLLGPSGCGKTTLLSCIVNR 39 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i~g~ 39 (149)
.++|+|+.|+|||||++.+.+-
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999864
No 395
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.05 E-value=0.00031 Score=50.46 Aligned_cols=23 Identities=39% Similarity=0.501 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHhcCc
Q psy10767 18 AYGLLGPSGCGKTTLLSCIVNRL 40 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i~g~~ 40 (149)
.++|+|+.|+|||||++.+.+-.
T Consensus 22 ~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 22 KILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999998653
No 396
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=97.04 E-value=0.00033 Score=50.21 Aligned_cols=23 Identities=22% Similarity=0.323 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHhcCc
Q psy10767 18 AYGLLGPSGCGKTTLLSCIVNRL 40 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i~g~~ 40 (149)
.++|+|+.|+|||||++.+.+-.
T Consensus 30 ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 30 KIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 58999999999999999998754
No 397
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=97.04 E-value=0.00027 Score=49.79 Aligned_cols=22 Identities=27% Similarity=0.300 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q psy10767 18 AYGLLGPSGCGKTTLLSCIVNR 39 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i~g~ 39 (149)
.++|+|+.|+|||||++.+.+-
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999999875
No 398
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=97.03 E-value=0.00074 Score=49.97 Aligned_cols=30 Identities=27% Similarity=0.168 Sum_probs=24.8
Q ss_pred eEEEeCCcEEEEECCCCCCHHHHHHHHhcC
Q psy10767 10 NTVIFGVTAYGLLGPSGCGKTTLLSCIVNR 39 (149)
Q Consensus 10 ~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~ 39 (149)
++-...|..+.|+||+|+|||||...|+..
T Consensus 28 ~~v~~~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 28 VLVDIYGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EEEEETTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHHHh
Confidence 344456788999999999999999998764
No 399
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=97.03 E-value=0.00039 Score=49.65 Aligned_cols=23 Identities=26% Similarity=0.332 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHhcCc
Q psy10767 18 AYGLLGPSGCGKTTLLSCIVNRL 40 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i~g~~ 40 (149)
.++|+|+.|+|||||++.+.+-.
T Consensus 22 ki~~~G~~~~GKssl~~~l~~~~ 44 (201)
T 2q3h_A 22 KCVLVGDGAVGKTSLVVSYTTNG 44 (201)
T ss_dssp EEEEECSTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999998653
No 400
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=97.03 E-value=0.0003 Score=50.52 Aligned_cols=23 Identities=35% Similarity=0.459 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHhcCc
Q psy10767 18 AYGLLGPSGCGKTTLLSCIVNRL 40 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i~g~~ 40 (149)
.++|+|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998753
No 401
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=97.02 E-value=0.00039 Score=55.27 Aligned_cols=25 Identities=24% Similarity=0.425 Sum_probs=22.0
Q ss_pred cEEEEECCCCCCHHHHHHHHhcCcc
Q psy10767 17 TAYGLLGPSGCGKTTLLSCIVNRLR 41 (149)
Q Consensus 17 ~~~~iiG~nGaGKSTLl~~i~g~~~ 41 (149)
-+++|+||+|||||||.+.|+..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 3799999999999999999987653
No 402
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=97.01 E-value=0.00026 Score=49.45 Aligned_cols=22 Identities=27% Similarity=0.567 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q psy10767 18 AYGLLGPSGCGKTTLLSCIVNR 39 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i~g~ 39 (149)
.++++|+.|+|||||++.+.+-
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999999864
No 403
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=97.00 E-value=0.00038 Score=50.63 Aligned_cols=22 Identities=41% Similarity=0.729 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q psy10767 18 AYGLLGPSGCGKTTLLSCIVNR 39 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i~g~ 39 (149)
.++|+|+.|+|||||++.+.+-
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4899999999999999999874
No 404
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.00 E-value=0.00042 Score=50.85 Aligned_cols=25 Identities=28% Similarity=0.335 Sum_probs=21.4
Q ss_pred CcEEEEECCCCCCHHHHHHHHhcCc
Q psy10767 16 VTAYGLLGPSGCGKTTLLSCIVNRL 40 (149)
Q Consensus 16 g~~~~iiG~nGaGKSTLl~~i~g~~ 40 (149)
+-.+.|+|+.||||||+.+.|+..+
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4568999999999999999997643
No 405
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.00 E-value=0.00034 Score=50.53 Aligned_cols=23 Identities=30% Similarity=0.492 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHhcCc
Q psy10767 18 AYGLLGPSGCGKTTLLSCIVNRL 40 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i~g~~ 40 (149)
.++|+|+.|+|||||++.+.+-.
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998754
No 406
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.99 E-value=0.00045 Score=55.96 Aligned_cols=27 Identities=19% Similarity=0.164 Sum_probs=23.2
Q ss_pred eCCcEEEEECCCCCCHHHHHHHHhcCc
Q psy10767 14 FGVTAYGLLGPSGCGKTTLLSCIVNRL 40 (149)
Q Consensus 14 ~~g~~~~iiG~nGaGKSTLl~~i~g~~ 40 (149)
....++.|+|++||||||+.+.|+..+
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 456799999999999999999997643
No 407
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=96.98 E-value=0.00041 Score=49.35 Aligned_cols=22 Identities=27% Similarity=0.552 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q psy10767 18 AYGLLGPSGCGKTTLLSCIVNR 39 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i~g~ 39 (149)
.++|+|+.|+|||||++.+.+-
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 4799999999999999888764
No 408
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=96.98 E-value=0.00035 Score=50.78 Aligned_cols=23 Identities=35% Similarity=0.560 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHhcCc
Q psy10767 18 AYGLLGPSGCGKTTLLSCIVNRL 40 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i~g~~ 40 (149)
.++|+|+.|+|||||++.+.+-.
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999998763
No 409
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=96.98 E-value=0.00054 Score=50.73 Aligned_cols=28 Identities=36% Similarity=0.476 Sum_probs=24.2
Q ss_pred eCCcEEEEECCCCCCHHHHHHHHhcCcc
Q psy10767 14 FGVTAYGLLGPSGCGKTTLLSCIVNRLR 41 (149)
Q Consensus 14 ~~g~~~~iiG~nGaGKSTLl~~i~g~~~ 41 (149)
.+|-++.|.|+.||||||+++.|...+.
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4688999999999999999999977664
No 410
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.97 E-value=0.00049 Score=49.68 Aligned_cols=24 Identities=33% Similarity=0.549 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHhcCcc
Q psy10767 18 AYGLLGPSGCGKTTLLSCIVNRLR 41 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i~g~~~ 41 (149)
.+.|.||.|+|||||++.++....
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 789999999999999999987553
No 411
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=96.97 E-value=0.00035 Score=53.20 Aligned_cols=24 Identities=25% Similarity=0.398 Sum_probs=21.8
Q ss_pred EEEEECCCCCCHHHHHHHHhcCcc
Q psy10767 18 AYGLLGPSGCGKTTLLSCIVNRLR 41 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i~g~~~ 41 (149)
.++|+|..|+|||||++.|+|...
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~~ 51 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRDF 51 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSCC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCCc
Confidence 589999999999999999999753
No 412
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.97 E-value=0.00042 Score=50.51 Aligned_cols=24 Identities=25% Similarity=0.461 Sum_probs=21.1
Q ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Q psy10767 16 VTAYGLLGPSGCGKTTLLSCIVNR 39 (149)
Q Consensus 16 g~~~~iiG~nGaGKSTLl~~i~g~ 39 (149)
+-+++|+|+.||||||+.+.|+..
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~ 26 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASE 26 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 357899999999999999999764
No 413
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.96 E-value=0.00046 Score=52.22 Aligned_cols=27 Identities=30% Similarity=0.373 Sum_probs=23.3
Q ss_pred eCCcEEEEECCCCCCHHHHHHHHhcCc
Q psy10767 14 FGVTAYGLLGPSGCGKTTLLSCIVNRL 40 (149)
Q Consensus 14 ~~g~~~~iiG~nGaGKSTLl~~i~g~~ 40 (149)
..+..+.|.||+|+|||||+++++...
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 455668899999999999999998765
No 414
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=96.95 E-value=0.00043 Score=50.01 Aligned_cols=23 Identities=26% Similarity=0.314 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHhcCc
Q psy10767 18 AYGLLGPSGCGKTTLLSCIVNRL 40 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i~g~~ 40 (149)
.++|+|+.|+|||||++.+.+-.
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998654
No 415
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=96.95 E-value=0.00043 Score=52.34 Aligned_cols=23 Identities=22% Similarity=0.483 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHhcCc
Q psy10767 18 AYGLLGPSGCGKTTLLSCIVNRL 40 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i~g~~ 40 (149)
.++|+|..|+|||||++.+.|-.
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999864
No 416
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=96.95 E-value=0.0004 Score=49.65 Aligned_cols=23 Identities=26% Similarity=0.264 Sum_probs=20.3
Q ss_pred cEEEEECCCCCCHHHHHHHHhcC
Q psy10767 17 TAYGLLGPSGCGKTTLLSCIVNR 39 (149)
Q Consensus 17 ~~~~iiG~nGaGKSTLl~~i~g~ 39 (149)
-.++|+|+.|+|||||++.+.+-
T Consensus 30 ~ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 30 MRILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp EEEEEEESTTSSHHHHHHHHCSS
T ss_pred cEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999999764
No 417
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=96.94 E-value=0.0004 Score=56.75 Aligned_cols=23 Identities=22% Similarity=0.445 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHhcCc
Q psy10767 18 AYGLLGPSGCGKTTLLSCIVNRL 40 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i~g~~ 40 (149)
.++|+|++|+|||||++.|+|-.
T Consensus 25 ~V~lvG~~nvGKSTL~n~l~~~~ 47 (456)
T 4dcu_A 25 VVAIVGRPNVGKSTIFNRIAGER 47 (456)
T ss_dssp EEEEECSSSSSHHHHHHHHEEEE
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 58999999999999999999853
No 418
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=96.94 E-value=0.00042 Score=51.93 Aligned_cols=28 Identities=32% Similarity=0.355 Sum_probs=21.9
Q ss_pred eCCcEEEEECCCCCCHHHHHHHHhcCcc
Q psy10767 14 FGVTAYGLLGPSGCGKTTLLSCIVNRLR 41 (149)
Q Consensus 14 ~~g~~~~iiG~nGaGKSTLl~~i~g~~~ 41 (149)
.+|-++.|.|++||||||+++.|...+.
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5788999999999999999999987664
No 419
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=96.94 E-value=0.0004 Score=49.87 Aligned_cols=23 Identities=30% Similarity=0.524 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHhcCc
Q psy10767 18 AYGLLGPSGCGKTTLLSCIVNRL 40 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i~g~~ 40 (149)
.++|+|+.|+|||||++.+.+-.
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 37999999999999999998753
No 420
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=96.94 E-value=0.00027 Score=49.63 Aligned_cols=23 Identities=35% Similarity=0.417 Sum_probs=9.0
Q ss_pred EEEEECCCCCCHHHHHHHHhcCc
Q psy10767 18 AYGLLGPSGCGKTTLLSCIVNRL 40 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i~g~~ 40 (149)
.++|+|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~~ 32 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSEDA 32 (183)
T ss_dssp EEEEECCCCC-------------
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47999999999999999998653
No 421
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.94 E-value=0.00058 Score=53.07 Aligned_cols=27 Identities=19% Similarity=0.177 Sum_probs=24.5
Q ss_pred EEeCCcEEEEECCCCCCHHHHHHHHhc
Q psy10767 12 VIFGVTAYGLLGPSGCGKTTLLSCIVN 38 (149)
Q Consensus 12 ~~~~g~~~~iiG~nGaGKSTLl~~i~g 38 (149)
-+++|+++.|.|++|+|||||+..++.
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 468899999999999999999988875
No 422
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.93 E-value=0.00064 Score=50.38 Aligned_cols=26 Identities=31% Similarity=0.401 Sum_probs=22.2
Q ss_pred CCcEEEEECCCCCCHHHHHHHHhcCc
Q psy10767 15 GVTAYGLLGPSGCGKTTLLSCIVNRL 40 (149)
Q Consensus 15 ~g~~~~iiG~nGaGKSTLl~~i~g~~ 40 (149)
.+-.+.|+|+.||||||+.+.|+..+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 44578999999999999999997643
No 423
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=96.92 E-value=0.00046 Score=52.35 Aligned_cols=23 Identities=22% Similarity=0.481 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHhcCc
Q psy10767 18 AYGLLGPSGCGKTTLLSCIVNRL 40 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i~g~~ 40 (149)
.++++|+.|+|||||++.|.|-.
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999864
No 424
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.91 E-value=0.00045 Score=49.06 Aligned_cols=22 Identities=32% Similarity=0.419 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q psy10767 18 AYGLLGPSGCGKTTLLSCIVNR 39 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i~g~ 39 (149)
.++++|+.|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999999865
No 425
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.90 E-value=0.00051 Score=54.76 Aligned_cols=29 Identities=24% Similarity=0.296 Sum_probs=25.6
Q ss_pred EeCCcEEEEECCCCCCHHHHHHHHhcCcc
Q psy10767 13 IFGVTAYGLLGPSGCGKTTLLSCIVNRLR 41 (149)
Q Consensus 13 ~~~g~~~~iiG~nGaGKSTLl~~i~g~~~ 41 (149)
+++|+++.|.|++|+|||||...++....
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~~ 88 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAAQ 88 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 78999999999999999999988876543
No 426
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.90 E-value=0.00045 Score=56.37 Aligned_cols=24 Identities=38% Similarity=0.449 Sum_probs=21.7
Q ss_pred cEEEEECCCCCCHHHHHHHHhcCc
Q psy10767 17 TAYGLLGPSGCGKTTLLSCIVNRL 40 (149)
Q Consensus 17 ~~~~iiG~nGaGKSTLl~~i~g~~ 40 (149)
..+.|.||+|+|||||+++|++..
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~~l 154 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGNYV 154 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 468899999999999999999866
No 427
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=96.89 E-value=0.0006 Score=51.38 Aligned_cols=27 Identities=26% Similarity=0.423 Sum_probs=24.1
Q ss_pred CCcEEEEECCCCCCHHHHHHHHhcCcc
Q psy10767 15 GVTAYGLLGPSGCGKTTLLSCIVNRLR 41 (149)
Q Consensus 15 ~g~~~~iiG~nGaGKSTLl~~i~g~~~ 41 (149)
+|.++.|.|++||||||+++.|...+.
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999999987664
No 428
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=96.89 E-value=0.0006 Score=50.17 Aligned_cols=22 Identities=32% Similarity=0.465 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q psy10767 18 AYGLLGPSGCGKTTLLSCIVNR 39 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i~g~ 39 (149)
.++|+|++|+|||||++.+.|.
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999874
No 429
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.89 E-value=0.00051 Score=50.07 Aligned_cols=24 Identities=33% Similarity=0.720 Sum_probs=20.8
Q ss_pred cEEEEECCCCCCHHHHHHHHhcCc
Q psy10767 17 TAYGLLGPSGCGKTTLLSCIVNRL 40 (149)
Q Consensus 17 ~~~~iiG~nGaGKSTLl~~i~g~~ 40 (149)
-.++|+|..|+|||||++.++.-.
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 368999999999999999988653
No 430
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.88 E-value=0.00061 Score=53.76 Aligned_cols=24 Identities=38% Similarity=0.595 Sum_probs=21.5
Q ss_pred cEEEEECCCCCCHHHHHHHHhcCc
Q psy10767 17 TAYGLLGPSGCGKTTLLSCIVNRL 40 (149)
Q Consensus 17 ~~~~iiG~nGaGKSTLl~~i~g~~ 40 (149)
.++.|+||+|||||||.+.|+..+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 378999999999999999998755
No 431
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.88 E-value=0.00016 Score=63.25 Aligned_cols=40 Identities=30% Similarity=0.430 Sum_probs=31.4
Q ss_pred eEEEeCCcEEEEECCCCCCHHHHHHHHhcCccCCcceEEECC
Q psy10767 10 NTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSA 51 (149)
Q Consensus 10 ~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g 51 (149)
++.+.++..+.|+||+|||||||.++|++.... +.+.+++
T Consensus 505 ~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~--~~i~v~~ 544 (806)
T 1ypw_A 505 KFGMTPSKGVLFYGPPGCGKTLLAKAIANECQA--NFISIKG 544 (806)
T ss_dssp CCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTC--CCCCCCC
T ss_pred hcCCCCCceeEEECCCCCCHHHHHHHHHHHhCC--CEEEEec
Confidence 556678888999999999999999999987643 3444443
No 432
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.88 E-value=0.00065 Score=50.53 Aligned_cols=25 Identities=16% Similarity=0.292 Sum_probs=22.2
Q ss_pred CcEEEEECCCCCCHHHHHHHHhcCc
Q psy10767 16 VTAYGLLGPSGCGKTTLLSCIVNRL 40 (149)
Q Consensus 16 g~~~~iiG~nGaGKSTLl~~i~g~~ 40 (149)
+-+++|.|+.||||||+.+.|+..+
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 5678999999999999999998755
No 433
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.87 E-value=0.00055 Score=47.79 Aligned_cols=27 Identities=26% Similarity=0.366 Sum_probs=22.6
Q ss_pred CcEEEEECCCCCCHHHHHHHHhcCccC
Q psy10767 16 VTAYGLLGPSGCGKTTLLSCIVNRLRL 42 (149)
Q Consensus 16 g~~~~iiG~nGaGKSTLl~~i~g~~~~ 42 (149)
...+.|.||.|+|||||++.++.....
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 445789999999999999999886643
No 434
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.87 E-value=0.00072 Score=53.31 Aligned_cols=25 Identities=28% Similarity=0.490 Sum_probs=22.0
Q ss_pred CcEEEEECCCCCCHHHHHHHHhcCc
Q psy10767 16 VTAYGLLGPSGCGKTTLLSCIVNRL 40 (149)
Q Consensus 16 g~~~~iiG~nGaGKSTLl~~i~g~~ 40 (149)
+.+++|+||+|||||||...|+..+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4578999999999999999998765
No 435
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=96.86 E-value=0.00023 Score=51.61 Aligned_cols=23 Identities=30% Similarity=0.534 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHhcCc
Q psy10767 18 AYGLLGPSGCGKTTLLSCIVNRL 40 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i~g~~ 40 (149)
.++|+|+.|+|||||++.+.+-.
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~~ 35 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDGR 35 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999998643
No 436
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=96.84 E-value=0.00074 Score=50.04 Aligned_cols=27 Identities=30% Similarity=0.340 Sum_probs=24.0
Q ss_pred CCcEEEEECCCCCCHHHHHHHHhcCcc
Q psy10767 15 GVTAYGLLGPSGCGKTTLLSCIVNRLR 41 (149)
Q Consensus 15 ~g~~~~iiG~nGaGKSTLl~~i~g~~~ 41 (149)
+|-++.+-|++||||||+++.|...+.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 478899999999999999999987664
No 437
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=96.82 E-value=0.00058 Score=49.16 Aligned_cols=23 Identities=22% Similarity=0.299 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHhcCc
Q psy10767 18 AYGLLGPSGCGKTTLLSCIVNRL 40 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i~g~~ 40 (149)
.++|+|+.|+|||||++.+.+-.
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhhCC
Confidence 47999999999999999997653
No 438
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.82 E-value=0.001 Score=48.94 Aligned_cols=25 Identities=32% Similarity=0.327 Sum_probs=22.4
Q ss_pred EeCCcEEEEECCCCCCHHHHHHHHh
Q psy10767 13 IFGVTAYGLLGPSGCGKTTLLSCIV 37 (149)
Q Consensus 13 ~~~g~~~~iiG~nGaGKSTLl~~i~ 37 (149)
+.+|+++-|.|+.|+|||||+.-++
T Consensus 27 l~~G~l~~i~G~pG~GKT~l~l~~~ 51 (251)
T 2zts_A 27 FPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHH
Confidence 7899999999999999999986554
No 439
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=96.82 E-value=0.00039 Score=49.15 Aligned_cols=24 Identities=25% Similarity=0.243 Sum_probs=20.6
Q ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Q psy10767 16 VTAYGLLGPSGCGKTTLLSCIVNR 39 (149)
Q Consensus 16 g~~~~iiG~nGaGKSTLl~~i~g~ 39 (149)
.-.++++|+.|+|||||++.+.+-
T Consensus 22 ~~~i~v~G~~~~GKssli~~l~~~ 45 (189)
T 2x77_A 22 KIRVLMLGLDNAGKTSILYRLHLG 45 (189)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCCS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 345899999999999999999653
No 440
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=96.81 E-value=0.00067 Score=49.56 Aligned_cols=23 Identities=39% Similarity=0.525 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHhcCc
Q psy10767 18 AYGLLGPSGCGKTTLLSCIVNRL 40 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i~g~~ 40 (149)
-++|+|+.|+|||||++.+.+-.
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999998753
No 441
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.81 E-value=0.00062 Score=52.82 Aligned_cols=24 Identities=29% Similarity=0.517 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHhcCcc
Q psy10767 18 AYGLLGPSGCGKTTLLSCIVNRLR 41 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i~g~~~ 41 (149)
.+.|.||+|+||||+++++++.+.
T Consensus 60 ~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 388999999999999999998753
No 442
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.81 E-value=0.00096 Score=52.98 Aligned_cols=26 Identities=23% Similarity=0.349 Sum_probs=23.5
Q ss_pred CCcEEEEECCCCCCHHHHHHHHhcCc
Q psy10767 15 GVTAYGLLGPSGCGKTTLLSCIVNRL 40 (149)
Q Consensus 15 ~g~~~~iiG~nGaGKSTLl~~i~g~~ 40 (149)
++.++.|+||.|||||||...|+..+
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC
Confidence 45689999999999999999999876
No 443
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.80 E-value=0.00075 Score=55.40 Aligned_cols=34 Identities=21% Similarity=0.239 Sum_probs=27.3
Q ss_pred CCcEEEEECCCCCCHHHHHHHHhcCccCCcceEE
Q psy10767 15 GVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSIS 48 (149)
Q Consensus 15 ~g~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~ 48 (149)
++.++.++|++|+||||++..|+..+....-.|.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVl 132 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVG 132 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEE
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 4679999999999999999999987765433443
No 444
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.79 E-value=0.00082 Score=50.01 Aligned_cols=26 Identities=38% Similarity=0.602 Sum_probs=21.6
Q ss_pred CCcEEEEECCCCCCHHHHHHHHhcCc
Q psy10767 15 GVTAYGLLGPSGCGKTTLLSCIVNRL 40 (149)
Q Consensus 15 ~g~~~~iiG~nGaGKSTLl~~i~g~~ 40 (149)
...-+.|.||.|+||||+.++++...
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 34457899999999999999998754
No 445
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.79 E-value=0.00019 Score=58.70 Aligned_cols=33 Identities=24% Similarity=0.233 Sum_probs=26.8
Q ss_pred cEEEEECCCCCCHHHHHHHHhcCccCCcceEEE
Q psy10767 17 TAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISL 49 (149)
Q Consensus 17 ~~~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~ 49 (149)
.+++|+|++|+||||++..|++.+......|.+
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVll 132 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPAL 132 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 589999999999999999999987644334544
No 446
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=96.79 E-value=0.0007 Score=49.34 Aligned_cols=22 Identities=32% Similarity=0.619 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q psy10767 18 AYGLLGPSGCGKTTLLSCIVNR 39 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i~g~ 39 (149)
-++|+|+.|+|||||++.+.+-
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4899999999999999999765
No 447
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=96.79 E-value=0.00063 Score=49.09 Aligned_cols=22 Identities=27% Similarity=0.371 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q psy10767 18 AYGLLGPSGCGKTTLLSCIVNR 39 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i~g~ 39 (149)
.++++|+.|+|||||++.+.+-
T Consensus 32 ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 32 KCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999888753
No 448
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=96.77 E-value=0.00098 Score=49.84 Aligned_cols=28 Identities=29% Similarity=0.272 Sum_probs=24.7
Q ss_pred eCCcEEEEECCCCCCHHHHHHHHhcCcc
Q psy10767 14 FGVTAYGLLGPSGCGKTTLLSCIVNRLR 41 (149)
Q Consensus 14 ~~g~~~~iiG~nGaGKSTLl~~i~g~~~ 41 (149)
..|-++.|.|++||||||+.+.|...+.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4688999999999999999999987664
No 449
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=96.77 E-value=0.00025 Score=50.62 Aligned_cols=22 Identities=23% Similarity=0.505 Sum_probs=4.2
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q psy10767 18 AYGLLGPSGCGKTTLLSCIVNR 39 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i~g~ 39 (149)
.++|+|+.|+|||||++.+.+-
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999876
No 450
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=96.75 E-value=0.00093 Score=49.69 Aligned_cols=29 Identities=21% Similarity=0.088 Sum_probs=25.8
Q ss_pred eCCcEEEEECCCCCCHHHHHHHHhcCccC
Q psy10767 14 FGVTAYGLLGPSGCGKTTLLSCIVNRLRL 42 (149)
Q Consensus 14 ~~g~~~~iiG~nGaGKSTLl~~i~g~~~~ 42 (149)
.+|-++.+.|+.||||||+++.|...+..
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 36889999999999999999999887754
No 451
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.75 E-value=0.0002 Score=53.92 Aligned_cols=26 Identities=35% Similarity=0.431 Sum_probs=21.4
Q ss_pred EEeCCcEEEEECCCCCCHHHHHHHHhcC
Q psy10767 12 VIFGVTAYGLLGPSGCGKTTLLSCIVNR 39 (149)
Q Consensus 12 ~~~~g~~~~iiG~nGaGKSTLl~~i~g~ 39 (149)
....| +.|.||+|+|||||+++|+..
T Consensus 42 ~~~~~--vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 42 KIPKG--VLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp CCCSC--CCCBCSSCSSHHHHHHHHHHH
T ss_pred CCCce--EEEECCCCCcHHHHHHHHHHH
Confidence 34445 669999999999999999874
No 452
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.74 E-value=0.001 Score=49.55 Aligned_cols=29 Identities=24% Similarity=0.313 Sum_probs=23.6
Q ss_pred EEeCCcEEEEECCCCCCHHHHHHHHhcCc
Q psy10767 12 VIFGVTAYGLLGPSGCGKTTLLSCIVNRL 40 (149)
Q Consensus 12 ~~~~g~~~~iiG~nGaGKSTLl~~i~g~~ 40 (149)
...+..++.|+||.||||+|..+.|+-.+
T Consensus 25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 25 KLAKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp CTTSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred hccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34556688999999999999999997543
No 453
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=96.72 E-value=0.0016 Score=47.15 Aligned_cols=33 Identities=12% Similarity=0.203 Sum_probs=24.5
Q ss_pred ceecceEEEeCCcEEEEECCCCCCHHHHHHHHhc
Q psy10767 5 SASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVN 38 (149)
Q Consensus 5 ~~~~i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g 38 (149)
.+|.. +---.|.-+.|.|+||+|||||...+..
T Consensus 6 ~lHas-~v~v~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 6 TWHAN-FLVIDKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EEESE-EEEETTEEEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEE-EEEECCEEEEEEcCCCCCHHHHHHHHHH
Confidence 34433 3345677899999999999999987754
No 454
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.71 E-value=0.0006 Score=51.45 Aligned_cols=27 Identities=15% Similarity=0.245 Sum_probs=23.6
Q ss_pred eCCcEEEEECCCCCCHHHHHHHHhcCc
Q psy10767 14 FGVTAYGLLGPSGCGKTTLLSCIVNRL 40 (149)
Q Consensus 14 ~~g~~~~iiG~nGaGKSTLl~~i~g~~ 40 (149)
..+-+++|.|+.||||||+.+.|+..+
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhc
Confidence 566789999999999999999998766
No 455
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=96.70 E-value=0.00079 Score=48.50 Aligned_cols=22 Identities=27% Similarity=0.484 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q psy10767 18 AYGLLGPSGCGKTTLLSCIVNR 39 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i~g~ 39 (149)
.++|+|+.|+|||||++.+.+-
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999999864
No 456
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=96.68 E-value=0.00097 Score=52.78 Aligned_cols=27 Identities=26% Similarity=0.421 Sum_probs=22.9
Q ss_pred CCcEEEEECCCCCCHHHHHHHHhcCcc
Q psy10767 15 GVTAYGLLGPSGCGKTTLLSCIVNRLR 41 (149)
Q Consensus 15 ~g~~~~iiG~nGaGKSTLl~~i~g~~~ 41 (149)
+.-+++|+|+.|+|||||++.|++.+.
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~ 104 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLI 104 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 345799999999999999999987653
No 457
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.65 E-value=0.0012 Score=52.00 Aligned_cols=25 Identities=36% Similarity=0.428 Sum_probs=21.8
Q ss_pred CcEEEEECCCCCCHHHHHHHHhcCc
Q psy10767 16 VTAYGLLGPSGCGKTTLLSCIVNRL 40 (149)
Q Consensus 16 g~~~~iiG~nGaGKSTLl~~i~g~~ 40 (149)
..++.|+||+|||||||...|+..+
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 4578999999999999999998654
No 458
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=96.65 E-value=0.00096 Score=53.87 Aligned_cols=22 Identities=27% Similarity=0.410 Sum_probs=19.3
Q ss_pred EEEECCCCCCHHHHHHHHhcCc
Q psy10767 19 YGLLGPSGCGKTTLLSCIVNRL 40 (149)
Q Consensus 19 ~~iiG~nGaGKSTLl~~i~g~~ 40 (149)
++|+|..++|||||++.|+|..
T Consensus 3 I~ivG~pnvGKSTL~n~L~~~~ 24 (397)
T 1wxq_A 3 IGVVGKPNVGKSTFFSAATLVD 24 (397)
T ss_dssp EEEEECTTSSHHHHHHHHHC--
T ss_pred EEEECCCCCCHHHHHHHHHCCC
Confidence 7899999999999999999864
No 459
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.64 E-value=0.0012 Score=47.17 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHhcCc
Q psy10767 18 AYGLLGPSGCGKTTLLSCIVNRL 40 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i~g~~ 40 (149)
.+.|.||.|+||||+++.++...
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 38899999999999999998653
No 460
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=96.60 E-value=0.0016 Score=50.17 Aligned_cols=25 Identities=20% Similarity=0.299 Sum_probs=22.3
Q ss_pred EEEEECCCCCCHHHHHHHHhcCccC
Q psy10767 18 AYGLLGPSGCGKTTLLSCIVNRLRL 42 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i~g~~~~ 42 (149)
.++++|.+|+|||||+|.|.|....
T Consensus 122 ~v~~vG~~nvGKSsliN~l~~~~~~ 146 (282)
T 1puj_A 122 RALIIGIPNVGKSTLINRLAKKNIA 146 (282)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSCCC
T ss_pred eEEEEecCCCchHHHHHHHhcCcee
Confidence 5899999999999999999987643
No 461
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=96.58 E-value=0.0011 Score=53.81 Aligned_cols=23 Identities=22% Similarity=0.445 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHhcCc
Q psy10767 18 AYGLLGPSGCGKTTLLSCIVNRL 40 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i~g~~ 40 (149)
.++|+|++|+|||||++.|+|-.
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~~ 27 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGER 27 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999853
No 462
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.56 E-value=0.0012 Score=47.54 Aligned_cols=24 Identities=33% Similarity=0.238 Sum_probs=19.8
Q ss_pred CCcEEEEECCCCCCHHHHH-HHHhc
Q psy10767 15 GVTAYGLLGPSGCGKTTLL-SCIVN 38 (149)
Q Consensus 15 ~g~~~~iiG~nGaGKSTLl-~~i~g 38 (149)
+|.++.+.||.||||||++ +.+..
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~ 26 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEI 26 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999997 55543
No 463
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.56 E-value=0.0015 Score=48.05 Aligned_cols=23 Identities=30% Similarity=0.463 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHhcCc
Q psy10767 18 AYGLLGPSGCGKTTLLSCIVNRL 40 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i~g~~ 40 (149)
++.|+||.||||+|..+.|+.-+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999997544
No 464
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.55 E-value=0.0015 Score=44.84 Aligned_cols=28 Identities=25% Similarity=0.128 Sum_probs=23.0
Q ss_pred CCcEEEEECCCCCCHHHHHHHHhcCccC
Q psy10767 15 GVTAYGLLGPSGCGKTTLLSCIVNRLRL 42 (149)
Q Consensus 15 ~g~~~~iiG~nGaGKSTLl~~i~g~~~~ 42 (149)
.+.-+-|.||.|+|||++.+.|......
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~~~~~ 50 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQFGRN 50 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHHSSTT
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHhCCc
Confidence 3445789999999999999999886543
No 465
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=96.54 E-value=0.0018 Score=47.61 Aligned_cols=26 Identities=35% Similarity=0.552 Sum_probs=22.2
Q ss_pred CcEEEEECCCCCCHHHHHHHHhcCcc
Q psy10767 16 VTAYGLLGPSGCGKTTLLSCIVNRLR 41 (149)
Q Consensus 16 g~~~~iiG~nGaGKSTLl~~i~g~~~ 41 (149)
|.+++|=|+.||||||+++.|...+.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHH
Confidence 45788999999999999999987664
No 466
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.54 E-value=0.0011 Score=51.81 Aligned_cols=28 Identities=29% Similarity=0.356 Sum_probs=23.8
Q ss_pred eCCcEEEEECCCCCCHHHHHHHHhcCcc
Q psy10767 14 FGVTAYGLLGPSGCGKTTLLSCIVNRLR 41 (149)
Q Consensus 14 ~~g~~~~iiG~nGaGKSTLl~~i~g~~~ 41 (149)
..+..+.|.||.|+|||||++.++....
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 3456789999999999999999988664
No 467
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=96.50 E-value=0.0015 Score=52.57 Aligned_cols=44 Identities=23% Similarity=0.217 Sum_probs=31.4
Q ss_pred eEEE-eCCc-EEEEECCCCCCHHHHHHHHhcCc-----------cCCcceEEECCee
Q psy10767 10 NTVI-FGVT-AYGLLGPSGCGKTTLLSCIVNRL-----------RLDHGSISLSART 53 (149)
Q Consensus 10 ~~~~-~~g~-~~~iiG~nGaGKSTLl~~i~g~~-----------~~~~G~i~~~g~~ 53 (149)
.|.| +.|. -+||+|..-+|||||+|.|+|.. .|..|.+.+.+..
T Consensus 64 ~f~v~k~g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~~ 120 (376)
T 4a9a_A 64 GFDVARTGVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAK 120 (376)
T ss_dssp TTTBCBCSSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTEE
T ss_pred CceEeecCCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCcE
Confidence 3444 3343 48999999999999999999963 2234677776643
No 468
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=96.47 E-value=0.00091 Score=48.61 Aligned_cols=22 Identities=32% Similarity=0.525 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHH-HhcC
Q psy10767 18 AYGLLGPSGCGKTTLLSC-IVNR 39 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~-i~g~ 39 (149)
.++|+|+.|+|||||++. +.|.
T Consensus 17 ki~v~G~~~~GKSsli~~~~~~~ 39 (221)
T 3gj0_A 17 KLVLVGDGGTGKTTFVKRHLTGE 39 (221)
T ss_dssp EEEEEECTTSSHHHHHTTBHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 379999999999999998 5554
No 469
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=95.47 E-value=0.00046 Score=49.52 Aligned_cols=22 Identities=27% Similarity=0.371 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q psy10767 18 AYGLLGPSGCGKTTLLSCIVNR 39 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i~g~ 39 (149)
.++|+|+.|+|||||++.+.+-
T Consensus 32 ki~v~G~~~~GKSsli~~l~~~ 53 (204)
T 3th5_A 32 KCVVVGDGAVGKTCLLISYTTN 53 (204)
Confidence 4799999999999999888754
No 470
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=96.45 E-value=0.0021 Score=49.74 Aligned_cols=22 Identities=36% Similarity=0.552 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q psy10767 18 AYGLLGPSGCGKTTLLSCIVNR 39 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i~g~ 39 (149)
.++|+|+.|+|||||++.+.+-
T Consensus 5 KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 5 KLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp EEEEECCTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999998775
No 471
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.43 E-value=0.002 Score=49.15 Aligned_cols=26 Identities=27% Similarity=0.318 Sum_probs=21.8
Q ss_pred CCcEEEEECCCCCCHHHHHHHHhcCc
Q psy10767 15 GVTAYGLLGPSGCGKTTLLSCIVNRL 40 (149)
Q Consensus 15 ~g~~~~iiG~nGaGKSTLl~~i~g~~ 40 (149)
.+..+.|.||.|+||||+.+.++..+
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHH
Confidence 34468899999999999999887765
No 472
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=96.42 E-value=0.0019 Score=52.51 Aligned_cols=24 Identities=21% Similarity=0.416 Sum_probs=20.9
Q ss_pred cEEEEECCCCCCHHHHHHHHhcCc
Q psy10767 17 TAYGLLGPSGCGKTTLLSCIVNRL 40 (149)
Q Consensus 17 ~~~~iiG~nGaGKSTLl~~i~g~~ 40 (149)
.+++|+||+|||||||.+.|+..+
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 468999999999999999997644
No 473
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=96.42 E-value=0.00027 Score=50.65 Aligned_cols=23 Identities=35% Similarity=0.478 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHhcCc
Q psy10767 18 AYGLLGPSGCGKTTLLSCIVNRL 40 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i~g~~ 40 (149)
.++|+|+.|+|||||++.+.+-.
T Consensus 35 ki~vvG~~~~GKSsli~~l~~~~ 57 (199)
T 3l0i_B 35 KLLLIGDSGVGKSCLLLRFADDT 57 (199)
T ss_dssp EEEEECCTTSCCTTTTTSSBCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998754
No 474
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=96.40 E-value=0.0011 Score=52.30 Aligned_cols=23 Identities=26% Similarity=0.462 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHhcCc
Q psy10767 18 AYGLLGPSGCGKTTLLSCIVNRL 40 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i~g~~ 40 (149)
.++|+|..|+|||||++.|+|..
T Consensus 33 ~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp EEEEECBTTSSHHHHHHTTTTSC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999964
No 475
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.39 E-value=0.002 Score=48.63 Aligned_cols=23 Identities=35% Similarity=0.429 Sum_probs=20.3
Q ss_pred cEEEEECCCCCCHHHHHHHHhcC
Q psy10767 17 TAYGLLGPSGCGKTTLLSCIVNR 39 (149)
Q Consensus 17 ~~~~iiG~nGaGKSTLl~~i~g~ 39 (149)
..+-|.||.|+|||||.++++..
T Consensus 65 ~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHH
Confidence 35789999999999999999875
No 476
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=96.35 E-value=0.0016 Score=53.58 Aligned_cols=24 Identities=21% Similarity=0.354 Sum_probs=21.3
Q ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Q psy10767 16 VTAYGLLGPSGCGKTTLLSCIVNR 39 (149)
Q Consensus 16 g~~~~iiG~nGaGKSTLl~~i~g~ 39 (149)
|-.++|+|+.|+|||||++.++|.
T Consensus 224 ~~kV~ivG~~nvGKSSLln~L~~~ 247 (462)
T 3geh_A 224 GLKVAIVGRPNVGKSSLLNAWSQS 247 (462)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Confidence 445899999999999999999885
No 477
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=96.33 E-value=0.0023 Score=52.52 Aligned_cols=42 Identities=24% Similarity=0.478 Sum_probs=27.4
Q ss_pred EEEECCCCCCHHHHHHHHhcCccCCcceEEECCeecceeeeeec
Q psy10767 19 YGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQ 62 (149)
Q Consensus 19 ~~iiG~nGaGKSTLl~~i~g~~~~~~G~i~~~g~~~~~i~~~~q 62 (149)
+.|+||.||||||+.++|++..... -+.++...+...+|+.+
T Consensus 53 iLl~GppGtGKT~lar~lA~~l~~~--~~~v~~~~~~~~g~vG~ 94 (444)
T 1g41_A 53 ILMIGPTGVGKTEIARRLAKLANAP--FIKVEATKFTEVGYVGK 94 (444)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTCC--EEEEEGGGGC----CCC
T ss_pred EEEEcCCCCCHHHHHHHHHHHcCCC--ceeecchhhcccceeec
Confidence 7799999999999999999987543 34444433333345443
No 478
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.33 E-value=0.0019 Score=51.65 Aligned_cols=28 Identities=36% Similarity=0.373 Sum_probs=24.4
Q ss_pred EeCCcEEEEECCCCCCHHHHHHHHhcCc
Q psy10767 13 IFGVTAYGLLGPSGCGKTTLLSCIVNRL 40 (149)
Q Consensus 13 ~~~g~~~~iiG~nGaGKSTLl~~i~g~~ 40 (149)
+..|+++.|.|+.|+|||||+..++...
T Consensus 71 l~~G~li~I~G~pGsGKTtlal~la~~~ 98 (366)
T 1xp8_A 71 IPRGRITEIYGPESGGKTTLALAIVAQA 98 (366)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEEcCCCCChHHHHHHHHHHH
Confidence 6789999999999999999998776543
No 479
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.33 E-value=0.0023 Score=48.11 Aligned_cols=23 Identities=35% Similarity=0.489 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHhcCc
Q psy10767 18 AYGLLGPSGCGKTTLLSCIVNRL 40 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i~g~~ 40 (149)
..||+|+.||||||+.+.|+..+
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceeeECCCCCCHHHHHHHHHHHh
Confidence 57999999999999999996543
No 480
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=96.33 E-value=0.0019 Score=54.28 Aligned_cols=24 Identities=17% Similarity=0.299 Sum_probs=21.9
Q ss_pred cEEEEECCCCCCHHHHHHHHhcCc
Q psy10767 17 TAYGLLGPSGCGKTTLLSCIVNRL 40 (149)
Q Consensus 17 ~~~~iiG~nGaGKSTLl~~i~g~~ 40 (149)
-.++|+|..|+|||||+|.|.|..
T Consensus 66 ~~V~vvG~~n~GKSTLIN~Llg~~ 89 (550)
T 2qpt_A 66 PMVLVAGQYSTGKTSFIQYLLEQE 89 (550)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCc
Confidence 379999999999999999999864
No 481
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.31 E-value=0.0023 Score=48.53 Aligned_cols=25 Identities=24% Similarity=0.434 Sum_probs=21.3
Q ss_pred CcEEEEECCCCCCHHHHHHHHhcCc
Q psy10767 16 VTAYGLLGPSGCGKTTLLSCIVNRL 40 (149)
Q Consensus 16 g~~~~iiG~nGaGKSTLl~~i~g~~ 40 (149)
+..+.|.||.|+||||+.+.++...
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 3457799999999999999998765
No 482
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.30 E-value=0.0029 Score=50.05 Aligned_cols=28 Identities=18% Similarity=0.222 Sum_probs=24.2
Q ss_pred EEeCCcEEEEECCCCCCHHHHHHHHhcC
Q psy10767 12 VIFGVTAYGLLGPSGCGKTTLLSCIVNR 39 (149)
Q Consensus 12 ~~~~g~~~~iiG~nGaGKSTLl~~i~g~ 39 (149)
-+.+|.++.|.||.|+|||||...++..
T Consensus 119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 119 HRYASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEEESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 4677888899999999999999998753
No 483
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=96.29 E-value=0.002 Score=52.77 Aligned_cols=25 Identities=40% Similarity=0.517 Sum_probs=21.9
Q ss_pred EEEEECCCCCCHHHHHHHHhcCccC
Q psy10767 18 AYGLLGPSGCGKTTLLSCIVNRLRL 42 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i~g~~~~ 42 (149)
.+.|.||+|+|||||.++|+.....
T Consensus 52 ~vLL~GppGtGKTtlAr~ia~~~~~ 76 (447)
T 3pvs_A 52 SMILWGPPGTGKTTLAEVIARYANA 76 (447)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred EEEEECCCCCcHHHHHHHHHHHhCC
Confidence 3789999999999999999987644
No 484
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=96.28 E-value=0.0024 Score=50.58 Aligned_cols=31 Identities=29% Similarity=0.399 Sum_probs=23.9
Q ss_pred ceEEEeCCcEEEEECCCCCCHHHHHHHHhcC
Q psy10767 9 LNTVIFGVTAYGLLGPSGCGKTTLLSCIVNR 39 (149)
Q Consensus 9 i~~~~~~g~~~~iiG~nGaGKSTLl~~i~g~ 39 (149)
+.+.++----++|+|..+||||||++.|++-
T Consensus 151 ~~leLk~la~V~lvG~~nvGKSTLln~L~~~ 181 (342)
T 1lnz_A 151 IVLELKVLADVGLVGFPSVGKSTLLSVVSSA 181 (342)
T ss_dssp EEEEEECCCCEEEESSTTSSHHHHHHHSEEE
T ss_pred HhhhhhhcCeeeeeCCCCCCHHHHHHHHHcC
Confidence 3344443335899999999999999999875
No 485
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.28 E-value=0.003 Score=49.10 Aligned_cols=26 Identities=31% Similarity=0.464 Sum_probs=22.9
Q ss_pred CcEEEEECCCCCCHHHHHHHHhcCcc
Q psy10767 16 VTAYGLLGPSGCGKTTLLSCIVNRLR 41 (149)
Q Consensus 16 g~~~~iiG~nGaGKSTLl~~i~g~~~ 41 (149)
+.-+.|.||.|+|||+|+++|+....
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 56788999999999999999987654
No 486
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.28 E-value=0.0026 Score=49.60 Aligned_cols=26 Identities=27% Similarity=0.429 Sum_probs=22.2
Q ss_pred CCcEEEEECCCCCCHHHHHHHHhcCc
Q psy10767 15 GVTAYGLLGPSGCGKTTLLSCIVNRL 40 (149)
Q Consensus 15 ~g~~~~iiG~nGaGKSTLl~~i~g~~ 40 (149)
+..-+-|.||.|+|||||.++++...
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCceEEEECCCCccHHHHHHHHHHHc
Confidence 34568899999999999999999765
No 487
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=96.27 E-value=0.0027 Score=51.02 Aligned_cols=23 Identities=35% Similarity=0.510 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHhcCc
Q psy10767 18 AYGLLGPSGCGKTTLLSCIVNRL 40 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i~g~~ 40 (149)
.++++|..|+|||||++.|+|..
T Consensus 10 ~I~vvG~~~~GKSTLi~~L~~~~ 32 (403)
T 3sjy_A 10 NIGVVGHVDHGKTTLVQAITGIW 32 (403)
T ss_dssp EEEEECSTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcc
Confidence 58999999999999999999954
No 488
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.27 E-value=0.0026 Score=48.92 Aligned_cols=24 Identities=21% Similarity=0.412 Sum_probs=20.7
Q ss_pred cEEEEECCCCCCHHHHHHHHhcCc
Q psy10767 17 TAYGLLGPSGCGKTTLLSCIVNRL 40 (149)
Q Consensus 17 ~~~~iiG~nGaGKSTLl~~i~g~~ 40 (149)
-.+.|.||.|+|||+|.++|+...
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 356788999999999999998765
No 489
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=96.27 E-value=0.0022 Score=51.12 Aligned_cols=24 Identities=21% Similarity=0.347 Sum_probs=21.6
Q ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Q psy10767 16 VTAYGLLGPSGCGKTTLLSCIVNR 39 (149)
Q Consensus 16 g~~~~iiG~nGaGKSTLl~~i~g~ 39 (149)
+..++++|.+|+|||||+|.|.|.
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHH
T ss_pred cCcEEEEcCCCCchHHHHHHHHhh
Confidence 446899999999999999999986
No 490
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.26 E-value=0.0024 Score=50.26 Aligned_cols=25 Identities=36% Similarity=0.562 Sum_probs=21.7
Q ss_pred CcEEEEECCCCCCHHHHHHHHhcCc
Q psy10767 16 VTAYGLLGPSGCGKTTLLSCIVNRL 40 (149)
Q Consensus 16 g~~~~iiG~nGaGKSTLl~~i~g~~ 40 (149)
+..+.|.||+|+||||+.++|+...
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 4458899999999999999998765
No 491
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.26 E-value=0.0024 Score=49.92 Aligned_cols=27 Identities=26% Similarity=0.278 Sum_probs=23.6
Q ss_pred CcEEEEECCCCCCHHHHHHHHhcCccC
Q psy10767 16 VTAYGLLGPSGCGKTTLLSCIVNRLRL 42 (149)
Q Consensus 16 g~~~~iiG~nGaGKSTLl~~i~g~~~~ 42 (149)
+..+-|.||.|+||||+.+.++.....
T Consensus 70 ~~~vLl~GppGtGKT~la~~la~~l~~ 96 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMGMAQALGP 96 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 457899999999999999999987753
No 492
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.25 E-value=0.0028 Score=49.62 Aligned_cols=25 Identities=32% Similarity=0.398 Sum_probs=22.1
Q ss_pred CcEEEEECCCCCCHHHHHHHHhcCc
Q psy10767 16 VTAYGLLGPSGCGKTTLLSCIVNRL 40 (149)
Q Consensus 16 g~~~~iiG~nGaGKSTLl~~i~g~~ 40 (149)
+..+.|.||.|+|||||++.++...
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHH
Confidence 4578999999999999999998765
No 493
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=96.24 E-value=0.0021 Score=54.52 Aligned_cols=24 Identities=17% Similarity=0.324 Sum_probs=21.8
Q ss_pred cEEEEECCCCCCHHHHHHHHhcCc
Q psy10767 17 TAYGLLGPSGCGKTTLLSCIVNRL 40 (149)
Q Consensus 17 ~~~~iiG~nGaGKSTLl~~i~g~~ 40 (149)
-+++|+|+.++|||||+|.|.|..
T Consensus 39 ~~VaivG~pnvGKStLiN~L~g~~ 62 (592)
T 1f5n_A 39 VVVAIVGLYRTGKSYLMNKLAGKK 62 (592)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred cEEEEECCCCCCHHHHHHhHcCCC
Confidence 468999999999999999999964
No 494
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.22 E-value=0.0043 Score=46.48 Aligned_cols=26 Identities=19% Similarity=0.188 Sum_probs=22.3
Q ss_pred CcEEEEECCCCCCHHHHHHHHhcCcc
Q psy10767 16 VTAYGLLGPSGCGKTTLLSCIVNRLR 41 (149)
Q Consensus 16 g~~~~iiG~nGaGKSTLl~~i~g~~~ 41 (149)
+..+-|.||.|+|||++.+.|.....
T Consensus 29 ~~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 29 DKPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp CSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred CCCEEEECCCCCcHHHHHHHHHHhcC
Confidence 34577999999999999999988764
No 495
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=96.21 E-value=0.0033 Score=48.26 Aligned_cols=25 Identities=32% Similarity=0.377 Sum_probs=22.0
Q ss_pred CcEEEEECCCCCCHHHHHHHHhcCc
Q psy10767 16 VTAYGLLGPSGCGKTTLLSCIVNRL 40 (149)
Q Consensus 16 g~~~~iiG~nGaGKSTLl~~i~g~~ 40 (149)
|.++.|.||.|+|||||++.+....
T Consensus 31 ~~~v~i~G~~G~GKT~Ll~~~~~~~ 55 (350)
T 2qen_A 31 YPLTLLLGIRRVGKSSLLRAFLNER 55 (350)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHS
T ss_pred CCeEEEECCCcCCHHHHHHHHHHHc
Confidence 5789999999999999999997643
No 496
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.20 E-value=0.0028 Score=49.08 Aligned_cols=23 Identities=39% Similarity=0.531 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHhcCc
Q psy10767 18 AYGLLGPSGCGKTTLLSCIVNRL 40 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i~g~~ 40 (149)
.+.|.||.|+|||||++.|+...
T Consensus 57 ~vll~G~~GtGKT~la~~ia~~~ 79 (338)
T 3pfi_A 57 HILFSGPAGLGKTTLANIISYEM 79 (338)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHT
T ss_pred eEEEECcCCCCHHHHHHHHHHHh
Confidence 47899999999999999998654
No 497
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.18 E-value=0.0034 Score=49.52 Aligned_cols=26 Identities=35% Similarity=0.567 Sum_probs=22.1
Q ss_pred CCcEEEEECCCCCCHHHHHHHHhcCc
Q psy10767 15 GVTAYGLLGPSGCGKTTLLSCIVNRL 40 (149)
Q Consensus 15 ~g~~~~iiG~nGaGKSTLl~~i~g~~ 40 (149)
....+.|.||.|+|||||+++|+...
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHc
Confidence 34568899999999999999998754
No 498
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=96.17 E-value=0.0029 Score=51.34 Aligned_cols=23 Identities=22% Similarity=0.559 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHhcCc
Q psy10767 18 AYGLLGPSGCGKTTLLSCIVNRL 40 (149)
Q Consensus 18 ~~~iiG~nGaGKSTLl~~i~g~~ 40 (149)
.++|+|..|+|||||++.++|-.
T Consensus 177 ki~lvG~~nvGKSSLin~l~~~~ 199 (436)
T 2hjg_A 177 QFCLIGRPNVGKSSLVNAMLGEE 199 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHHTST
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999865
No 499
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=96.16 E-value=0.0028 Score=54.61 Aligned_cols=26 Identities=31% Similarity=0.446 Sum_probs=22.8
Q ss_pred CCcEEEEECCCCCCHHHHHHHHhcCc
Q psy10767 15 GVTAYGLLGPSGCGKTTLLSCIVNRL 40 (149)
Q Consensus 15 ~g~~~~iiG~nGaGKSTLl~~i~g~~ 40 (149)
++-.++|+|+.|+|||||+|.|+|..
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~ 93 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGEN 93 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44568999999999999999999864
No 500
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.13 E-value=0.0038 Score=48.46 Aligned_cols=25 Identities=28% Similarity=0.498 Sum_probs=21.4
Q ss_pred CcEEEEECCCCCCHHHHHHHHhcCc
Q psy10767 16 VTAYGLLGPSGCGKTTLLSCIVNRL 40 (149)
Q Consensus 16 g~~~~iiG~nGaGKSTLl~~i~g~~ 40 (149)
..-+-|.||.|+|||||.++++...
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~~ 75 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATEA 75 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHH
Confidence 3458899999999999999998754
Done!