RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10767
(149 letters)
>gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the
drug resistance transporter and related proteins,
subfamily A. This family of ATP-binding proteins
belongs to a multi-subunit transporter involved in drug
resistance (BcrA and DrrA), nodulation, lipid transport,
and lantibiotic immunity. In bacteria and archaea, these
transporters usually include an ATP-binding protein and
one or two integral membrane proteins. Eukaryotic
systems of the ABCA subfamily display ABC domains that
are quite similar to this family. The ATP-binding domain
shows the highest similarity between all members of the
ABC transporter family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 173
Score = 100 bits (251), Expect = 1e-27
Identities = 44/135 (32%), Positives = 62/135 (45%), Gaps = 42/135 (31%)
Query: 19 YGLLGPSGCGKTTLLSCIVNRLRLDHGSISL--------SARTVRDIGYMPQVGLMRSGA 70
YGLLGP+G GKTTL+ I+ L+ D G I + R IGY+P+
Sbjct: 29 YGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPEE------- 81
Query: 71 LLAEDSPSYLLEYYNCSTLEDVFLYLCEQDQILFSLVGSESAFGGQQRRVSFAVSLIHDP 130
L E ++ + S GG ++R++ A +L+HDP
Sbjct: 82 -------PSLYENLTV------------RENLKLS--------GGMKQRLALAQALLHDP 114
Query: 131 KILILDEPTVGLDPV 145
++LILDEPT GLDP
Sbjct: 115 ELLILDEPTSGLDPE 129
>gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase
component [Defense mechanisms].
Length = 293
Score = 100 bits (252), Expect = 1e-26
Identities = 51/144 (35%), Positives = 73/144 (50%), Gaps = 24/144 (16%)
Query: 19 YGLLGPSGCGKTTLLSCIVNRLRLDHGSISL--------SARTVRDIGYMPQVGLMRSGA 70
+GLLGP+G GKTTLL + L+ G I + A+ R IGY+PQ +
Sbjct: 34 FGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYVPQ-----EPS 88
Query: 71 LLAEDSPSYLLEYYNC------STLEDVFLYLCEQ---DQILFSLVGSESAFGGQQRRVS 121
L E + LE++ E+ L E + V + S GG ++R+S
Sbjct: 89 LYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLS--GGMKQRLS 146
Query: 122 FAVSLIHDPKILILDEPTVGLDPV 145
A++L+HDP++LILDEPT GLDP
Sbjct: 147 IALALLHDPELLILDEPTSGLDPE 170
>gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport
system, ATPase component. The biological function of
this family is not well characterized, but display ABC
domains similar to members of ABCA subfamily. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 211
Score = 84.9 bits (211), Expect = 3e-21
Identities = 51/150 (34%), Positives = 66/150 (44%), Gaps = 26/150 (17%)
Query: 13 IFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRD--------IGYMPQ-- 62
G YGLLGP+G GKTTL+ + G+I + + V IGY+PQ
Sbjct: 22 TLGPGMYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQEF 81
Query: 63 --------VGLMRSGALLAEDSPSYLLEYYNCSTLEDVFLYLCEQDQILFSLVGSESAFG 114
+ A L + LE V L + +I GS S G
Sbjct: 82 GVYPNFTVREFLDYIAWLKGIPSKEVKARV-DEVLELVNLGDRAKKKI-----GSLS--G 133
Query: 115 GQQRRVSFAVSLIHDPKILILDEPTVGLDP 144
G +RRV A +L+ DP ILI+DEPT GLDP
Sbjct: 134 GMRRRVGIAQALVGDPSILIVDEPTAGLDP 163
>gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid
transporters, subfamily A. The ABCA subfamily mediates
the transport of a variety of lipid compounds. Mutations
of members of ABCA subfamily are associated with human
genetic diseases, such as, familial high-density
lipoprotein (HDL) deficiency, neonatal surfactant
deficiency, degenerative retinopathies, and congenital
keratinization disorders. The ABCA1 protein is involved
in disorders of cholesterol transport and high-density
lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein
transports vitamin A derivatives in the outer segments
of photoreceptor cells, and therefore, performs a
crucial step in the visual cycle. The ABCA genes are not
present in yeast. However, evolutionary studies of ABCA
genes indicate that they arose as transporters that
subsequently duplicated and that certain sets of ABCA
genes were lost in different eukaryotic lineages.
Length = 220
Score = 83.7 bits (208), Expect = 1e-20
Identities = 43/144 (29%), Positives = 65/144 (45%), Gaps = 26/144 (18%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV--------RDIGYMPQVGLMRSGAL 71
GLLG +G GKTT L + LR G+ ++ ++ + +GY PQ AL
Sbjct: 32 GLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYCPQ-----FDAL 86
Query: 72 LAEDSPSYLLEYY---NCSTLEDVFLYLCEQDQILFSL-------VGSESAFGGQQRRVS 121
E + L +Y ++ E + L + S GG +R++S
Sbjct: 87 FDELTVREHLRFYARLKGLPKSEIKE-EVELLLRVLGLTDKANKRARTLS--GGMKRKLS 143
Query: 122 FAVSLIHDPKILILDEPTVGLDPV 145
A++LI P +L+LDEPT GLDP
Sbjct: 144 LAIALIGGPSVLLLDEPTSGLDPA 167
>gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding
protein-dependent transport systems. This class is
comprised of all BPD (Binding Protein Dependent) systems
that are largely represented in archaea and eubacteria
and are primarily involved in scavenging solutes from
the environment. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides, and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 178
Score = 79.5 bits (197), Expect = 2e-19
Identities = 47/133 (35%), Positives = 57/133 (42%), Gaps = 31/133 (23%)
Query: 19 YGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAEDSPS 78
LLGPSG GK+TLL CI D GSI + + D+ R G
Sbjct: 29 VALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIGM-------- 80
Query: 79 YLLEYYNCSTLEDVFLYLCEQDQILFSL--VGSESAF---GGQQRRVSFAVSLIHDPKIL 133
VF QD LF V A GGQQ+RV+ A +L DP +L
Sbjct: 81 -------------VF-----QDFALFPHLTVLENIALGLSGGQQQRVALARALAMDPDVL 122
Query: 134 ILDEPTVGLDPVL 146
+LDEPT LDP+
Sbjct: 123 LLDEPTSALDPIT 135
>gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG
transporter subfamily. The White subfamily represents
ABC transporters homologous to the Drosophila white
gene, which acts as a dimeric importer for eye pigment
precursors. The eye pigmentation of Drosophila is
developed from the synthesis and deposition in the cells
of red pigments, which are synthesized from guanine, and
brown pigments, which are synthesized from tryptophan.
The pigment precursors are encoded by the white, brown,
and scarlet genes, respectively. Evidence from genetic
and biochemical studies suggest that the White and Brown
proteins function as heterodimers to import guanine,
while the White and Scarlet proteins function to import
tryptophan. However, a recent study also suggests that
White may be involved in the transport of a metabolite,
such as 3-hydroxykynurenine, across intracellular
membranes. Mammalian ABC transporters belonging to the
White subfamily (ABCG1, ABCG5, and ABCG8) have been
shown to be involved in the regulation of
lipid-trafficking mechanisms in macrophages,
hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8),
the human homolog of the Drosophila white gene is
induced in monocyte-derived macrophages during
cholesterol influx mediated by acetylated low-density
lipoprotein. It is possible that human ABCG1 forms
heterodimers with several heterologous partners.
Length = 226
Score = 78.5 bits (194), Expect = 1e-18
Identities = 51/150 (34%), Positives = 73/150 (48%), Gaps = 23/150 (15%)
Query: 19 YGLLGPSGCGKTTLLSCIVNRLRLDHGSIS---------LSARTVRD-IGYMPQVGLMRS 68
+LG SG GKTTLL I R+ G+ S + + Y+ Q ++
Sbjct: 36 MAILGSSGSGKTTLLDAISGRVE-GGGTTSGQILFNGQPRKPDQFQKCVAYVRQDDILLP 94
Query: 69 GALLAEDSPSY--LLEYYNCST-------LEDVFLYLCEQDQILFSLVGSESAFGGQQRR 119
G L ++ +Y +L S+ +EDV L +I +LV S GG++RR
Sbjct: 95 G-LTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGIS--GGERRR 151
Query: 120 VSFAVSLIHDPKILILDEPTVGLDPVLSFS 149
VS AV L+ DPK+LILDEPT GLD + +
Sbjct: 152 VSIAVQLLWDPKVLILDEPTSGLDSFTALN 181
>gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of
iron-siderophores, vitamin B12 and hemin transporters
and related proteins. ABC transporters, involved in the
uptake of siderophores, heme, and vitamin B12, are
widely conserved in bacteria and archaea. Only very few
species lack representatives of the siderophore family
transporters. The E. coli BtuCD protein is an ABC
transporter mediating vitamin B12 uptake. The two
ATP-binding cassettes (BtuD) are in close contact with
each other, as are the two membrane-spanning subunits
(BtuC); this arrangement is distinct from that observed
for the E. coli lipid flippase MsbA. The BtuC subunits
provide 20 transmembrane helices grouped around a
translocation pathway that is closed to the cytoplasm by
a gate region, whereas the dimer arrangement of the BtuD
subunits resembles the ATP-bound form of the Rad50 DNA
repair enzyme. A prominent cytoplasmic loop of BtuC
forms the contact region with the ATP-binding cassette
and represent a conserved motif among the ABC
transporters.
Length = 180
Score = 77.1 bits (191), Expect = 1e-18
Identities = 41/134 (30%), Positives = 57/134 (42%), Gaps = 41/134 (30%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV---------RDIGYMPQVGLMRSGA 70
G+LGP+G GK+TLL + L+ G I L + + R I Y+PQ
Sbjct: 29 GILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVPQA------- 81
Query: 71 LLAEDSPSYLLEYYNCSTLEDVFLYLCEQDQILFSLVGSESAFGGQQRRVSFAVSLIHDP 130
LE + L D+ L S GG+++RV A +L +P
Sbjct: 82 ----------LELLGLAHLA---------DRPFNEL--S----GGERQRVLLARALAQEP 116
Query: 131 KILILDEPTVGLDP 144
IL+LDEPT LD
Sbjct: 117 PILLLDEPTSHLDI 130
>gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport
system involved in resistant to organic solvents. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 235
Score = 78.3 bits (194), Expect = 2e-18
Identities = 49/154 (31%), Positives = 72/154 (46%), Gaps = 37/154 (24%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRD------------IGYMPQVGLMR 67
++GPSG GK+TLL IV LR D G + + + +G + Q
Sbjct: 30 AIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQ----- 84
Query: 68 SGALLAEDSPS-------YLLEYYNCS--TLEDVFLYLCEQDQILFSLVGSESAF----- 113
SGAL DS + L E+ S + ++ L E L G+E +
Sbjct: 85 SGALF--DSLTVFENVAFPLREHTRLSEEEIREIVLEKLE----AVGLRGAEDLYPAELS 138
Query: 114 GGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLS 147
GG ++RV+ A +L DP++L+ DEPT GLDP+ S
Sbjct: 139 GGMKKRVALARALALDPELLLYDEPTAGLDPIAS 172
>gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the
metal-type transporters. This family includes
transporters involved in the uptake of various metallic
cations such as iron, manganese, and zinc. The ATPases
of this group of transporters are very similar to
members of iron-siderophore uptake family suggesting
that they share a common ancestor. The best
characterized metal-type ABC transporters are the
YfeABCD system of Y. pestis, the SitABCD system of
Salmonella enterica serovar Typhimurium, and the SitABCD
transporter of Shigella flexneri. Moreover other
uncharacterized homologs of these metal-type
transporters are mainly found in pathogens like
Haemophilus or enteroinvasive E. coli isolates.
Length = 213
Score = 76.8 bits (190), Expect = 3e-18
Identities = 47/144 (32%), Positives = 67/144 (46%), Gaps = 26/144 (18%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISL----SARTVRDIGYMPQVGLM-RSGALLAE 74
++GP+G GK+TLL I+ L+ GSI + + + IGY+PQ + R +
Sbjct: 29 AIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRSIDRDFPISVR 88
Query: 75 D-------SPSYLLEYYNCS-------TLEDVFLYLCEQDQILFSLVGSESAFGGQQRRV 120
D L + + LE V L QI G S GGQQ+RV
Sbjct: 89 DVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQI-----GELS--GGQQQRV 141
Query: 121 SFAVSLIHDPKILILDEPTVGLDP 144
A +L+ DP +L+LDEP G+DP
Sbjct: 142 LLARALVQDPDLLLLDEPFAGVDP 165
>gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an
uncharacterized transporter. This subgroup is related
to the subfamily A transporters involved in drug
resistance, nodulation, lipid transport, and bacteriocin
and lantibiotic immunity. In eubacteria and archaea, the
typical organization consists of one ABC and one or two
integral membranes. ABC transporters are a large family
of proteins involved in the transport of a wide variety
of different compounds, like sugars, ions, peptides and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region in addition to the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 210
Score = 76.6 bits (189), Expect = 5e-18
Identities = 44/138 (31%), Positives = 67/138 (48%), Gaps = 13/138 (9%)
Query: 18 AYGLLGPSGCGKTTLLSCIVNRLRLDHGSI-----SLSARTVRDIGYMPQV-GLMRSGAL 71
+GLLGP+G GKTT + I+ + D G + L IGY+P+ GL +
Sbjct: 28 IFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEERGLYPKMKV 87
Query: 72 LAEDSPSYLLEYYNCS---TLEDVFLYLCEQDQIL-FSLVGSESAFGGQQRRVSFAVSLI 127
+ D YL + + E+ ++ ++ E G Q++V F ++I
Sbjct: 88 I--DQLVYLAQLKGLKKEEARRRI-DEWLERLELSEYANKRVEELSKGNQQKVQFIAAVI 144
Query: 128 HDPKILILDEPTVGLDPV 145
HDP++LILDEP GLDPV
Sbjct: 145 HDPELLILDEPFSGLDPV 162
>gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of
the nitrate and sulfonate transporters. NrtD and SsuB
are the ATP-binding subunits of the bacterial ABC-type
nitrate and sulfonate transport systems, respectively.
ABC transporters are a large family of proteins involved
in the transport of a wide variety of different
compounds, like sugars, ions, peptides, and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 220
Score = 76.4 bits (189), Expect = 6e-18
Identities = 46/142 (32%), Positives = 64/142 (45%), Gaps = 30/142 (21%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV----RDIGYMPQVGLMRSGALL---- 72
L+GPSGCGK+TLL I R G + + V D GY+ Q ALL
Sbjct: 35 LVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQ-----QDALLPWLT 89
Query: 73 AEDSPSYLLEYYNCSTLEDVFLYLCEQDQI-----LFSLVGSESAF-----GGQQRRVSF 122
D+ + LE E +++ L L G E+A+ GG ++RV+
Sbjct: 90 VLDNVALGLELQGVPKAE-------ARERAEELLELVGLSGFENAYPHQLSGGMRQRVAL 142
Query: 123 AVSLIHDPKILILDEPTVGLDP 144
A +L DP +L+LDEP LD
Sbjct: 143 ARALAVDPDVLLLDEPFSALDA 164
>gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component
[Inorganic ion transport and metabolism].
Length = 254
Score = 76.1 bits (188), Expect = 1e-17
Identities = 42/145 (28%), Positives = 62/145 (42%), Gaps = 26/145 (17%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRD------IGYMPQVG--------- 64
L+GP+G GK+TLL I+ L+ G I + + VR IGY+PQ
Sbjct: 34 ALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPIT 93
Query: 65 ---LMRSGALLAEDSPSYLLEYYNCSTLEDVF--LYLCEQDQILFSLVGSESAFGGQQRR 119
++ G N E V L + + +G S GGQ++R
Sbjct: 94 VKDVVLLGRY----GKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELS--GGQKQR 147
Query: 120 VSFAVSLIHDPKILILDEPTVGLDP 144
V A +L +P +L+LDEP G+D
Sbjct: 148 VLLARALAQNPDLLLLDEPFTGVDV 172
>gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport
systems, ATPase components [Inorganic ion transport and
metabolism / Coenzyme metabolism].
Length = 258
Score = 76.1 bits (188), Expect = 2e-17
Identities = 40/143 (27%), Positives = 62/143 (43%), Gaps = 21/143 (14%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV---------RDIGYMPQVGLMRSGA 70
G+LGP+G GK+TLL C+ L+ G + L + + + + Y+PQ
Sbjct: 32 GILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQS-PSAPFG 90
Query: 71 LLAEDSPSY----LLEYYNCSTLEDV-----FLYLCEQDQILFSLVGSESAFGGQQRRVS 121
L + L + + ED L L + + V S GG+++RV
Sbjct: 91 LTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELS--GGERQRVL 148
Query: 122 FAVSLIHDPKILILDEPTVGLDP 144
A +L + IL+LDEPT LD
Sbjct: 149 IARALAQETPILLLDEPTSHLDI 171
>gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter
nucleotide-binding domain. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide-binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 157
Score = 73.4 bits (181), Expect = 2e-17
Identities = 38/135 (28%), Positives = 54/135 (40%), Gaps = 58/135 (42%)
Query: 19 YGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV---------RDIGYMPQVGLMRSG 69
L+GP+G GK+TLL I L+ G I + + + R IGY+PQ
Sbjct: 28 VALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQ------- 80
Query: 70 ALLAEDSPSYLLEYYNCSTLEDVFLYLCEQDQILFSLVGSESAFGGQQRRVSFAVSLIHD 129
S GGQ++RV+ A +L+ +
Sbjct: 81 ----------------------------------LS--------GGQRQRVALARALLLN 98
Query: 130 PKILILDEPTVGLDP 144
P +L+LDEPT GLDP
Sbjct: 99 PDLLLLDEPTSGLDP 113
>gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 300
Score = 76.2 bits (188), Expect = 2e-17
Identities = 47/143 (32%), Positives = 67/143 (46%), Gaps = 25/143 (17%)
Query: 19 YGLLGPSGCGKTTLLSCIVNRLRLDHGSIS-----LSARTVRDIGYMPQV-GLMRSGALL 72
+GLLGP+G GKTT I+ L G I+ LS IGY+P+ GL +
Sbjct: 31 FGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGYLPEERGLYPK--MT 88
Query: 73 AEDSPSYLLEYYNCST----------LEDVFLYLCEQDQILFSLVGSESAFGGQQRRVSF 122
ED YL E LE + + + +I + G Q+++ F
Sbjct: 89 VEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKI-------KELSKGNQQKIQF 141
Query: 123 AVSLIHDPKILILDEPTVGLDPV 145
++IH+P++LILDEP GLDPV
Sbjct: 142 ISAVIHEPELLILDEPFSGLDPV 164
>gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport
system, ATPase component [Inorganic ion transport and
metabolism].
Length = 248
Score = 75.3 bits (186), Expect = 2e-17
Identities = 48/148 (32%), Positives = 62/148 (41%), Gaps = 42/148 (28%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV----RDIGYMPQ-------------- 62
+LGPSGCGK+TLL I + G + L R V DIGY+ Q
Sbjct: 34 ILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQEDALLPWLTVLDNV 93
Query: 63 -VGLMRSGALLAEDSPSYLLEYYNCSTLEDVFLYLCEQDQILFSLVGSESAF-----GGQ 116
+GL G AE + E LE L L G E + GG
Sbjct: 94 ALGLELRGKSKAE-ARERAKEL-----LE------------LVGLAGFEDKYPHQLSGGM 135
Query: 117 QRRVSFAVSLIHDPKILILDEPTVGLDP 144
++RV+ A +L PK+L+LDEP LD
Sbjct: 136 RQRVAIARALATRPKLLLLDEPFGALDA 163
>gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of
nickel/oligopeptides specific transporters. The ABC
transporter subfamily specific for the transport of
dipeptides, oligopeptides (OppD), and nickel (NikDE).
The NikABCDE system of E. coli belongs to this family
and is composed of the periplasmic binding protein NikA,
two integral membrane components (NikB and NikC), and
two ATPase (NikD and NikE). The NikABCDE transporter is
synthesized under anaerobic conditions to meet the
increased demand for nickel resulting from hydrogenase
synthesis. The molecular mechanism of nickel uptake in
many bacteria and most archaea is not known. Many other
members of this ABC family are also involved in the
uptake of dipeptides and oligopeptides. The oligopeptide
transport system (Opp) is a five-component ABC transport
composed of a membrane-anchored substrate binding
proteins (SRP), OppA, two transmembrane proteins, OppB
and OppC, and two ATP-binding domains, OppD and OppF.
Length = 228
Score = 74.8 bits (185), Expect = 3e-17
Identities = 43/154 (27%), Positives = 62/154 (40%), Gaps = 35/154 (22%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV------------RDIGYMPQVG--- 64
GL+G SG GK+TL I+ L+ GSI + + ++I + Q
Sbjct: 35 GLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSS 94
Query: 65 ---LMRSGALLAEDSPSYLLEYYNCSTLEDVFLYLCEQDQILFSLVGSESAF-------- 113
M G +AE + + E V L L VG
Sbjct: 95 LNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVG--------VGLPEEVLNRYPHEL 146
Query: 114 -GGQQRRVSFAVSLIHDPKILILDEPTVGLDPVL 146
GGQ++RV+ A +L +PK+LI DEPT LD +
Sbjct: 147 SGGQRQRVAIARALALNPKLLIADEPTSALDVSV 180
>gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding
cassette component of cobalt transport system. Domain I
of the ABC component of a cobalt transport family found
in bacteria, archaea, and eukaryota. The transition
metal cobalt is an essential component of many enzymes
and must be transported into cells in appropriate
amounts when needed. This ABC transport system of the
CbiMNQO family is involved in cobalt transport in
association with the cobalamin (vitamin B12)
biosynthetic pathways. Most of cobalt (Cbi) transport
systems possess a separate CbiN component, the
cobalt-binding periplasmic protein, and they are encoded
by the conserved gene cluster cbiMNQO. Both the CbiM and
CbiQ proteins are integral cytoplasmic membrane
proteins, and the CbiO protein has the linker peptide
and the Walker A and B motifs commonly found in the
ATPase components of the ABC-type transport systems.
Length = 211
Score = 72.1 bits (178), Expect = 2e-16
Identities = 46/147 (31%), Positives = 70/147 (47%), Gaps = 32/147 (21%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSI-----SLSARTVRDIGYMPQVGL-------MR 67
++GP+G GK+TLL + L G + L+ +++++ +VGL
Sbjct: 31 LIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELR--RKVGLVFQNPDDQF 88
Query: 68 SGALLAEDSPSYLLEYYNCS----------TLEDVFLYLCEQDQILFSLVGSESAFGGQQ 117
G + E+ ++ LE LE V L +D+ F+L S GGQ+
Sbjct: 89 FGPTVEEEV-AFGLENLGLPEEEIEERVEEALELVGLE-GLRDRSPFTL----S--GGQK 140
Query: 118 RRVSFAVSLIHDPKILILDEPTVGLDP 144
+RV+ A L DP IL+LDEPT GLDP
Sbjct: 141 QRVAIAGVLAMDPDILLLDEPTAGLDP 167
>gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system,
ATPase component [Inorganic ion transport and
metabolism].
Length = 258
Score = 72.7 bits (179), Expect = 2e-16
Identities = 47/157 (29%), Positives = 69/157 (43%), Gaps = 36/157 (22%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSI--------SLSARTVR----DIGYMPQVGLMR 67
++GPSG GK+TLL + + G I L + +R DIG + Q
Sbjct: 34 AIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRDIGMIFQ----- 88
Query: 68 SGALLAEDSP-----SYLLEYYNCSTLEDVF--LYLCEQDQILFSL--VG-SESAF---- 113
L+ S L Y ST +F ++ Q L +L VG + A+
Sbjct: 89 QFNLVPRLSVLENVLLGRLGYT--STWRSLFGLFSKEDKAQALDALERVGILDKAYQRAS 146
Query: 114 ---GGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLS 147
GGQQ+RV+ A +L+ PKI++ DEP LDP +
Sbjct: 147 TLSGGQQQRVAIARALVQQPKIILADEPVASLDPESA 183
>gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain
an N-terminal double-glycine peptidase domain [Defense
mechanisms].
Length = 709
Score = 73.8 bits (182), Expect = 4e-16
Identities = 41/141 (29%), Positives = 67/141 (47%), Gaps = 15/141 (10%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISL--------SARTVR-DIGYMPQVGLMRSGA 70
++G SG GK+TLL ++ + G I L ++R +GY+ Q + SG+
Sbjct: 503 AIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGS 562
Query: 71 L---LAEDSPSYLLE-YYNCSTLEDVFLYLCEQDQILFSLVGSESAF--GGQQRRVSFAV 124
+ +A +P E + L ++ + VG A GGQ++R++ A
Sbjct: 563 IRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALAR 622
Query: 125 SLIHDPKILILDEPTVGLDPV 145
+L+ PKIL+LDE T LDP
Sbjct: 623 ALLSKPKILLLDEATSALDPE 643
>gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to
organic solvents, ATPase component [Secondary
metabolites biosynthesis, transport, and catabolism].
Length = 263
Score = 72.2 bits (178), Expect = 4e-16
Identities = 44/153 (28%), Positives = 68/153 (44%), Gaps = 38/153 (24%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMR-------SGALL 72
+LG SG GK+TLL I+ LR D G I + + + + + GAL
Sbjct: 38 AILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGAL- 96
Query: 73 AEDSPSYLLEYYNCSTLEDVFLYLCE---------QDQILFSL--VG-SESAF------- 113
+ + + E+V L E ++ +L L VG +A
Sbjct: 97 ----------FSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSEL 146
Query: 114 -GGQQRRVSFAVSLIHDPKILILDEPTVGLDPV 145
GG ++RV+ A ++ DP++L LDEPT GLDP+
Sbjct: 147 SGGMRKRVALARAIALDPELLFLDEPTSGLDPI 179
>gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding
protein. DrrA is the ATP-binding protein component of a
bacterial exporter complex that confers resistance to
the antibiotics daunorubicin and doxorubicin. In
addition to DrrA, the complex includes an integral
membrane protein called DrrB. DrrA belongs to the ABC
family of transporters and shares sequence and
functional similarities with a protein found in cancer
cells called P-glycoprotein. ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region in
addition to the Walker A motif/P-loop and Walker B motif
commonly found in a number of ATP- and GTP-binding and
hydrolyzing proteins.
Length = 220
Score = 71.2 bits (175), Expect = 5e-16
Identities = 46/141 (32%), Positives = 63/141 (44%), Gaps = 20/141 (14%)
Query: 19 YGLLGPSGCGKTTLLSCIVNRLRLDHG-------SISLSARTVR-DIGYMPQVGLMRS-- 68
+GLLGP+G GKTT + + L+ G + R VR IG + Q S
Sbjct: 29 FGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVFQ---DLSVD 85
Query: 69 GALLAEDSPSYLLEYYNCSTLE-----DVFLYLCEQDQILFSLVGSESAFGGQQRRVSFA 123
L ++ Y E D L + LV + S GG +RR+ A
Sbjct: 86 DELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYS--GGMRRRLEIA 143
Query: 124 VSLIHDPKILILDEPTVGLDP 144
SL+H P++L LDEPT+GLDP
Sbjct: 144 RSLVHRPEVLFLDEPTIGLDP 164
>gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems,
ATPase components [Amino acid transport and metabolism].
Length = 352
Score = 72.7 bits (179), Expect = 7e-16
Identities = 48/145 (33%), Positives = 62/145 (42%), Gaps = 34/145 (23%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV-------RDIGYMPQ---------V- 63
LLGPSGCGKTTLL I + G I L + R IG + Q V
Sbjct: 36 LLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMTVE 95
Query: 64 -----GLMRSGALLAEDSPSYLLEYYNCSTLEDVFLYLCEQDQILFSLVGSESAFGGQQR 118
GL L + + + E LE V L + S GGQQ+
Sbjct: 96 ENVAFGLKVRKKLKKAEIKARVEEA-----LELVGL-----EGFADRKPHQLS--GGQQQ 143
Query: 119 RVSFAVSLIHDPKILILDEPTVGLD 143
RV+ A +L+ +PK+L+LDEP LD
Sbjct: 144 RVALARALVPEPKVLLLDEPLSALD 168
>gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation
factor 3, subfamily F. Elongation factor 3 (EF-3) is a
cytosolic protein required by fungal ribosomes for in
vitro protein synthesis and for in vivo growth. EF-3
stimulates the binding of the EF-1: GTP: aa-tRNA ternary
complex to the ribosomal A site by facilitated release
of the deacylated tRNA from the E site. The reaction
requires ATP hydrolysis. EF-3 contains two ATP
nucleotide binding sequence (NBS) motifs. NBSI is
sufficient for the intrinsic ATPase activity. NBSII is
essential for the ribosome-stimulated functions.
Length = 144
Score = 69.0 bits (170), Expect = 7e-16
Identities = 32/125 (25%), Positives = 46/125 (36%), Gaps = 51/125 (40%)
Query: 19 YGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAEDSPS 78
GL+G +G GK+TLL I L D G ++ + IGY Q
Sbjct: 29 IGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTV--KIGYFEQ---------------- 70
Query: 79 YLLEYYNCSTLEDVFLYLCEQDQILFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEP 138
S GG++ R++ A L+ +P +L+LDEP
Sbjct: 71 -------------------------LS--------GGEKMRLALAKLLLENPNLLLLDEP 97
Query: 139 TVGLD 143
T LD
Sbjct: 98 TNHLD 102
>gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC
transporter ATP-binding subunit GldA. Members of this
protein family are exclusive to the Bacteroidetes phylum
(previously Cytophaga-Flavobacteria-Bacteroides). GldA
is an ABC transporter ATP-binding protein (pfam00005)
linked to a type of rapid surface gliding motility found
in certain Bacteroidetes, such as Flavobacterium
johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA
abolish the gliding phenotype. Gliding motility appears
closely linked to chitin utilization in the model
species Flavobacterium johnsoniae. Bacteroidetes with
members of this protein family appear to have all of the
genes associated with gliding motility.
Length = 301
Score = 71.3 bits (175), Expect = 1e-15
Identities = 51/148 (34%), Positives = 71/148 (47%), Gaps = 36/148 (24%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV--------RDIGYMPQVGLMRSGAL 71
G LGP+G GK+T + I L D GS+ + V R+IGY+P
Sbjct: 32 GFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLP---------- 81
Query: 72 LAEDSPSYLLEYYNCSTLE---DVF----LYLCEQDQILFSLVG----SESAFG----GQ 116
E +P YL + Y L+ ++ L ++ + + LVG G G
Sbjct: 82 --EHNPLYL-DMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGY 138
Query: 117 QRRVSFAVSLIHDPKILILDEPTVGLDP 144
++RV A +LIHDPK+LILDEPT GLDP
Sbjct: 139 RQRVGLAQALIHDPKVLILDEPTTGLDP 166
>gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter
subfamily G of the ATP-binding cassette superfamily.
ABCG transporters are involved in eye pigment (EP)
precursor transport, regulation of lipid-trafficking
mechanisms, and pleiotropic drug resistance (DR). DR is
a well-described phenomenon occurring in fungi and
shares several similarities with processes in bacteria
and higher eukaryotes. Compared to other members of the
ABC transporter subfamilies, the ABCG transporter family
is composed of proteins that have an ATP-binding
cassette domain at the N-terminus and a TM
(transmembrane) domain at the C-terminus.
Length = 194
Score = 69.1 bits (170), Expect = 2e-15
Identities = 37/139 (26%), Positives = 62/139 (44%), Gaps = 37/139 (26%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDH--GSISLSARTVRD------IGYMPQVGLMRSGAL 71
++GPSG GK+TLL+ + R G + ++ R + IGY+PQ
Sbjct: 39 AIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRKIIGYVPQ--------- 89
Query: 72 LAEDSPSYLLEYYNCSTLEDVFL-YLCEQDQILFSLVGSESAFGGQQRRVSFAVSLIHDP 130
+D+ L ++ ++F+ GG+++RVS A+ L+ +P
Sbjct: 90 ------------------DDILHPTLTVRETLMFAAKLR-GLSGGERKRVSIALELVSNP 130
Query: 131 KILILDEPTVGLDPVLSFS 149
+L LDEPT GLD +
Sbjct: 131 SLLFLDEPTSGLDSSSALQ 149
>gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD,
subfamily C. The CYD subfamily implicated in cytochrome
bd biogenesis. The CydC and CydD proteins are important
for the formation of cytochrome bd terminal oxidase of
E. coli and it has been proposed that they were
necessary for biosynthesis of the cytochrome bd quinol
oxidase and for periplasmic c-type cytochromes. CydCD
were proposed to determine a heterooligomeric complex
important for heme export into the periplasm or to be
involved in the maintenance of the proper redox state of
the periplasmic space. In Bacillus subtilis, the absence
of CydCD does not affect the presence of halo-cytochrome
c in the membrane and this observation suggests that
CydCD proteins are not involved in the export of heme in
this organism.
Length = 178
Score = 68.5 bits (168), Expect = 2e-15
Identities = 39/124 (31%), Positives = 59/124 (47%), Gaps = 25/124 (20%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAEDSPSYL 80
LLG SG GK+TLL + L+ G I+L V D+ + S + P YL
Sbjct: 33 LLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLE-----KALSSLISVLNQRP-YL 86
Query: 81 LEYYNCSTLEDVFLYLCEQDQILFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTV 140
++ + ++ FS GG+++R++ A L+ D I++LDEPTV
Sbjct: 87 ---FDTTLRNNL--------GRRFS--------GGERQRLALARILLQDAPIVLLDEPTV 127
Query: 141 GLDP 144
GLDP
Sbjct: 128 GLDP 131
>gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit. The
gene pair cydCD encodes an ABC-family transporter in
which each gene contains an N-terminal membrane-spanning
domain (pfam00664) and a C-terminal ATP-binding domain
(pfam00005). In E. coli these genes were discovered as
mutants which caused the terminal heme-copper oxidase
complex cytochrome bd to fail to assemble. Recent work
has shown that the transporter is involved in export of
redox-active thiol compounds such as cysteine and
glutathione. The linkage to assembly of the cytochrome
bd complex is further supported by the conserved operon
structure found outside the gammaproteobacteria
(cydABCD) containing both the transporter and oxidase
genes components. The genes used as the seed members for
this model are all either found in the
gammproteobacterial context or the CydABCD context. All
members of this family scoring above trusted at the time
of its creation were from genomes which encode a
cytochrome bd complex. Unfortunately, the gene symbol
nomenclature adopted based on this operon in B. subtilis
assigns cydC to the third gene in the operon where this
gene is actually homologous to the E. coli cydD gene. We
have chosen to name all homologs in this family in
accordance with the precedence of publication of the E.
coli name, CydD.
Length = 529
Score = 71.2 bits (175), Expect = 2e-15
Identities = 41/163 (25%), Positives = 72/163 (44%), Gaps = 25/163 (15%)
Query: 2 ADVSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRD----- 56
+ ++ + L+GPSG GK+TLL+ ++ + GSI+++ + D
Sbjct: 334 RRPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADS 393
Query: 57 ----IGYMPQVGLMRSGALLA-------EDSPSYLLEYYNCSTLEDVFLYLCEQD--QIL 103
I ++PQ + +G + + S + + E LE L Q L
Sbjct: 394 WRDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIRE-----ALERAGLDEFVAALPQGL 448
Query: 104 FSLVGSESA--FGGQQRRVSFAVSLIHDPKILILDEPTVGLDP 144
+ +G A GGQ +R++ A + + D +L+LDEPT LD
Sbjct: 449 DTPIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDA 491
>gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter
ATP-binding subunit. This model describes daunorubicin
resistance ABC transporter, ATP binding subunit in
bacteria and archaea. This model is restricted in its
scope to preferentially recognize the ATP binding
subunit associated with effux of the drug, daunorubicin.
This transport system belong to the larger ATP-Binding
Cassette (ABC) transporter superfamily. The
characteristic feature of these transporter is the
obligatory coupling of ATP hydrolysis to substrate
translocation. The minimal configuration of bacterial
ABC transport system: an ATPase or ATP binding subunit;
An integral membrane protein; a hydrophilic polypetpide,
which likely functions as substrate binding protein. In
eukaryotes proteins of similar function include p-gyco
proteins, multidrug resistance protein etc [Transport
and binding proteins, Other].
Length = 302
Score = 70.5 bits (173), Expect = 3e-15
Identities = 50/145 (34%), Positives = 62/145 (42%), Gaps = 28/145 (19%)
Query: 19 YGLLGPSGCGKTTLLSCIVNRLRLDHGSISLS-------ARTVRD-IGYMPQV------- 63
+G LGP+G GKTT + + LR G+ ++ R VR IG +PQ
Sbjct: 22 FGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDL 81
Query: 64 ----GLMRSGALLAEDSPSYLLEYYNCSTLEDVFLYLCEQDQILFSLVGSESAFGGQQRR 119
L G L P E LE L VG+ S GG +RR
Sbjct: 82 TGRENLEMMGRLY--GLPKDEAEERAEELLELFELGEAAD-----RPVGTYS--GGMRRR 132
Query: 120 VSFAVSLIHDPKILILDEPTVGLDP 144
+ A SLIH P +L LDEPT GLDP
Sbjct: 133 LDIAASLIHQPDVLFLDEPTTGLDP 157
>gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette
domain of the molybdenum transport system. ModC is an
ABC-type transporter and the ATPase component of a
molybdate transport system that also includes the
periplasmic binding protein ModA and the membrane
protein ModB. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 214
Score = 68.9 bits (169), Expect = 4e-15
Identities = 43/155 (27%), Positives = 60/155 (38%), Gaps = 43/155 (27%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV-------------RDIGYMPQ---- 62
G+ G SG GK+TLL CI + D G+I L+ + R IG + Q
Sbjct: 27 GIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYAL 86
Query: 63 -----------VGLMRSGALLAEDSPSYLLEYYNCSTLEDVFLYLCEQDQILFSLVGSES 111
GL R S LL+ D +L S
Sbjct: 87 FPHLNVRENLAFGLKRKRNREDRISVDELLDLLGL-------------DHLLNRYPAQLS 133
Query: 112 AFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVL 146
GG+++RV+ A +L P++L+LDEP LD L
Sbjct: 134 --GGEKQRVALARALAAQPELLLLDEPFSALDRAL 166
>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated
ATPase domains [General function prediction only].
Length = 530
Score = 70.4 bits (173), Expect = 5e-15
Identities = 38/131 (29%), Positives = 56/131 (42%), Gaps = 18/131 (13%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAEDSPSY 79
++GP+G GK+TLL + L G++ + TV+ IGY Q L + +
Sbjct: 352 AIVGPNGAGKSTLLKLLAGELGPLSGTVKV-GETVK-IGYFDQ----HRDELDPDKTVLE 405
Query: 80 LLEYYNCSTLEDV-------FLYLCEQDQILFSLVGSESAFGGQQRRVSFAVSLIHDPKI 132
L E F + E VG S GG++ R+ A L+ P +
Sbjct: 406 ELSEGFPDGDEQEVRAYLGRFGFTGED---QEKPVGVLS--GGEKARLLLAKLLLQPPNL 460
Query: 133 LILDEPTVGLD 143
L+LDEPT LD
Sbjct: 461 LLLDEPTNHLD 471
Score = 65.7 bits (161), Expect = 2e-13
Identities = 45/158 (28%), Positives = 67/158 (42%), Gaps = 37/158 (23%)
Query: 19 YGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQ---------------- 62
GL+G +G GK+TLL + L D G ++ + +R +GY+ Q
Sbjct: 32 IGLVGRNGAGKSTLLKILAGELEPDSGEVTR-PKGLR-VGYLSQEPPLDPEKTVLDYVIE 89
Query: 63 ---------VGLMRSGALLAEDSPSYLLEYYNCSTLEDVFLYLCEQDQILFSL------- 106
L + ALLA+ L E D + ++ L L
Sbjct: 90 GFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDR 149
Query: 107 -VGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLD 143
V S S GG +RRV+ A +L+ +P +L+LDEPT LD
Sbjct: 150 PVSSLS--GGWRRRVALARALLEEPDLLLLDEPTNHLD 185
>gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 226
Score = 68.7 bits (169), Expect = 6e-15
Identities = 41/159 (25%), Positives = 70/159 (44%), Gaps = 50/159 (31%)
Query: 19 YGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV-------------RDIGYMPQVGL 65
++GPSG GK+TLL+ + + G + ++ + + + IG++ Q
Sbjct: 34 VAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQ--- 90
Query: 66 MRSGALLAEDSPSY-LLEYYNCSTLEDVFLYL---------CEQDQI-LFSLVGSESAF- 113
++ LL + LE+V L L ++ L ++G E
Sbjct: 91 ------------NFNLLPDL--TVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLL 136
Query: 114 --------GGQQRRVSFAVSLIHDPKILILDEPTVGLDP 144
GGQQ+RV+ A +LI++PKI++ DEPT LD
Sbjct: 137 KKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDS 175
>gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug
resistance protein-like transporters. The MRP
(Multidrug Resistance Protein)-like transporters are
involved in drug, peptide, and lipid export. They belong
to the subfamily C of the ATP-binding cassette (ABC)
superfamily of transport proteins. The ABCC subfamily
contains transporters with a diverse functional spectrum
that includes ion transport, cell surface receptor, and
toxin secretion activities. The MRP-like family, similar
to all ABC proteins, have a common four-domain core
structure constituted by two membrane-spanning domains,
each composed of six transmembrane (TM) helices, and two
nucleotide-binding domains (NBD). ABC transporters are a
subset of nucleotide hydrolases that contain a signature
motif, Q-loop, and H-loop/switch region, in addition to,
the Walker A motif/P-loop and Walker B motif commonly
found in a number of ATP- and GTP-binding and
hydrolyzing proteins.
Length = 171
Score = 67.0 bits (165), Expect = 8e-15
Identities = 40/138 (28%), Positives = 56/138 (40%), Gaps = 51/138 (36%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSI--------SLSARTVRD-IGYMPQVGLMRSGA 70
++GPSG GK+TLL ++ G I L ++R I Y+PQ
Sbjct: 32 AIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQ-------- 83
Query: 71 LLAEDSPSYLLEYYNCSTLEDVFLYLCEQDQI---LFSLVGSESAFGGQQRRVSFAVSLI 127
D FL+ I + S GGQ++R++ A +L+
Sbjct: 84 --------------------DPFLF---SGTIRENILS--------GGQRQRIAIARALL 112
Query: 128 HDPKILILDEPTVGLDPV 145
DP ILILDE T LDP
Sbjct: 113 RDPPILILDEATSALDPE 130
>gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection
ABC transporter, ATP-binding subunit. Model TIGR03731
represents the family of all lantibiotics related to
gallidermin, including epidermin, mutatin, and nisin.
This protein family describes the ATP-binding subunit of
a gallidermin/epidermin class lantibiotic protection
transporter. It is largely restricted to
gallidermin-family lantibiotic biosynthesis and export
cassettes, but also occurs in orphan transporter
cassettes in species that lack candidate lantibiotic
precursor and synthetase genes.
Length = 223
Score = 67.8 bits (166), Expect = 1e-14
Identities = 49/146 (33%), Positives = 75/146 (51%), Gaps = 31/146 (21%)
Query: 17 TAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSAR--TVRDIGYMPQVGLMRSGALLAE 74
+ YGLLGP+G GK+TLL I LR G I T +D L + G+L+
Sbjct: 27 SVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKD--------LHKIGSLI-- 76
Query: 75 DSPSYLLEYYNCSTLEDV-----FLYLCEQ--DQILFSLVGSESAFG--------GQQRR 119
+SP Y N + E++ L L + D++L ++V + G ++R
Sbjct: 77 ESPPL---YENLTARENLKVHTTLLGLPDSRIDEVL-NIVDLTNTGKKKAKQFSLGMKQR 132
Query: 120 VSFAVSLIHDPKILILDEPTVGLDPV 145
+ A++L++ PK+LILDEPT GLDP+
Sbjct: 133 LGIAIALLNHPKLLILDEPTNGLDPI 158
>gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the
transporters involved in export of lipoprotein and
macrolide, and cell division protein. This family is
comprised of MJ0796 ATP-binding cassette,
macrolide-specific ABC-type efflux carrier (MacAB), and
proteins involved in cell division (FtsE), and release
of lipoproteins from the cytoplasmic membrane (LolCDE).
They are clustered together phylogenetically. MacAB is
an exporter that confers resistance to macrolides, while
the LolCDE system is not a transporter at all. An FtsE
null mutants showed filamentous growth and appeared
viable on high salt medium only, indicating a role for
FtsE in cell division and/or salt transport. The LolCDE
complex catalyzes the release of lipoproteins from the
cytoplasmic membrane prior to their targeting to the
outer membrane.
Length = 218
Score = 67.1 bits (165), Expect = 2e-14
Identities = 40/160 (25%), Positives = 61/160 (38%), Gaps = 47/160 (29%)
Query: 19 YGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV-------------RDIGYMPQ--- 62
++GPSG GK+TLL+ + R G + + + R IG++ Q
Sbjct: 33 VAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFN 92
Query: 63 ------------VGLMRSGALLAEDSPSYLLEYYNCSTLEDVFLYLCEQ---DQILFSLV 107
+ L+ +G E + L E+ L
Sbjct: 93 LLPDLTALENVELPLLLAGVPKKER--------------RERAEELLERVGLGDRLNHYP 138
Query: 108 GSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLS 147
S GGQQ+RV+ A +L +DPKI++ DEPT LD
Sbjct: 139 SELS--GGQQQRVAIARALANDPKIILADEPTGNLDSETG 176
>gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of
the bacitracin-resistance transporter. The BcrA
subfamily represents ABC transporters involved in
peptide antibiotic resistance. Bacitracin is a
dodecapeptide antibiotic produced by B. licheniformis
and B. subtilis. The synthesis of bacitracin is
non-ribosomally catalyzed by a multi-enzyme complex
BcrABC. Bacitracin has potent antibiotic activity
against gram-positive bacteria. The inhibition of
peptidoglycan biosynthesis is the best characterized
bacterial effect of bacitracin. The bacitracin
resistance of B. licheniformis is mediated by the ABC
transporter Bcr which is composed of two identical BcrA
ATP-binding subunits and one each of the integral
membrane proteins, BcrB and BcrC. B. subtilis cells
carrying bcr genes on high-copy number plasmids develop
collateral detergent sensitivity, a similar phenomenon
in human cells with overexpressed multi-drug resistance
P-glycoprotein.
Length = 208
Score = 66.9 bits (164), Expect = 2e-14
Identities = 47/149 (31%), Positives = 69/149 (46%), Gaps = 41/149 (27%)
Query: 19 YGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYM-PQVGLMRSGALLAEDSP 77
YG LGP+G GKTT + I+ ++ D G I T Y L R GAL+ ++P
Sbjct: 29 YGFLGPNGAGKTTTMKIILGLIKPDSGEI-----TFDGKSYQKNIEALRRIGALI--EAP 81
Query: 78 SYLLEYYNCSTLEDVFLYLC-------EQDQIL---------------FSLVGSESAFGG 115
+ Y N + E++ L D++L FSL G
Sbjct: 82 GF---YPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSL--------G 130
Query: 116 QQRRVSFAVSLIHDPKILILDEPTVGLDP 144
++R+ A++L+ +P +LILDEPT GLDP
Sbjct: 131 MKQRLGIALALLGNPDLLILDEPTNGLDP 159
>gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the
binding protein-dependent phosphonate transport system.
Phosphonates are a class of organophosphorus compounds
characterized by a chemically stable
carbon-to-phosphorus (C-P) bond. Phosphonates are
widespread among naturally occurring compounds in all
kingdoms of wildlife, but only prokaryotic
microorganisms are able to cleave this bond. Certain
bacteria such as E. coli can use alkylphosphonates as a
phosphorus source. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 241
Score = 67.2 bits (165), Expect = 3e-14
Identities = 45/158 (28%), Positives = 69/158 (43%), Gaps = 38/158 (24%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISLSA-----------RTVR-DIGYMPQVGLMR 67
L+GPSG GK+TLL C+ + GS+ + R +R IG + Q
Sbjct: 31 ALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQ----- 85
Query: 68 SGALLAEDSPSYLLEYYNC------STLEDVFLYLCEQD-QILFSL---VG-SESAF--- 113
L+ +LE ST +F +++ Q + VG + A+
Sbjct: 86 QFNLIER---LSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRA 142
Query: 114 ----GGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLS 147
GGQQ+RV+ A +L+ PK+++ DEP LDP S
Sbjct: 143 DQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASS 180
>gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette
domain of the phosphate transport system. Phosphate
uptake is of fundamental importance in the cell
physiology of bacteria because phosphate is required as
a nutrient. The Pst system of E. coli comprises four
distinct subunits encoded by the pstS, pstA, pstB, and
pstC genes. The PstS protein is a phosphate-binding
protein located in the periplasmic space. PstA and PstC
are hydrophobic and they form the transmembrane portion
of the Pst system. PstB is the catalytic subunit, which
couples the energy of ATP hydrolysis to the import of
phosphate across cellular membranes through the Pst
system, often referred as ABC-protein. PstB belongs to
one of the largest superfamilies of proteins
characterized by a highly conserved adenosine
triphosphate (ATP) binding cassette (ABC), which is also
a nucleotide binding domain (NBD).
Length = 227
Score = 66.8 bits (164), Expect = 3e-14
Identities = 47/158 (29%), Positives = 71/158 (44%), Gaps = 36/158 (22%)
Query: 15 GVTAYGLLGPSGCGKTTLLSCIVNRLRL------DHGSISLSARTVRDIGYMP-----QV 63
+TA L+GPSGCGK+TLL + NRL D G + L + + D+ +V
Sbjct: 27 EITA--LIGPSGCGKSTLLRLL-NRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRV 83
Query: 64 GL---------------MRSGALLAEDSPSYLLEYYNCSTLEDVFLYLCEQDQILFSLVG 108
G+ + G L L+ L L+ D++ L
Sbjct: 84 GMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALW----DEVKDRLHA 139
Query: 109 SE-SAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPV 145
S GGQQ+R+ A +L ++P++L+LDEPT LDP+
Sbjct: 140 LGLS--GGQQQRLCLARALANEPEVLLLDEPTSALDPI 175
>gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding
cassette component of cobalt transport system. Domain
II of the ABC component of a cobalt transport family
found in bacteria, archaea, and eukaryota. The
transition metal cobalt is an essential component of
many enzymes and must be transported into cells in
appropriate amounts when needed. The CbiMNQO family ABC
transport system is involved in cobalt transport in
association with the cobalamin (vitamin B12)
biosynthetic pathways. Most cobalt (Cbi) transport
systems possess a separate CbiN component, the
cobalt-binding periplasmic protein, and they are encoded
by the conserved gene cluster cbiMNQO. Both the CbiM and
CbiQ proteins are integral cytoplasmic membrane
proteins, and the CbiO protein has the linker peptide
and the Walker A and B motifs commonly found in the
ATPase components of the ABC-type transport systems.
Length = 205
Score = 66.5 bits (163), Expect = 3e-14
Identities = 39/146 (26%), Positives = 60/146 (41%), Gaps = 35/146 (23%)
Query: 19 YGLLGPSGCGKTTLLSCIVNRLRLDHGSISL------SARTVRDIGYMPQVGLMRSGALL 72
L G +G GKTTL + ++ GSI L + + IGY+ Q
Sbjct: 29 IALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQ---------- 78
Query: 73 AEDSPSYLLEYYNCSTLEDVFL-------YLCEQDQIL--FSLVGSE-----SAFGGQQR 118
D L + S E++ L + + +L L + S GGQ++
Sbjct: 79 --DVDYQL---FTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQ 133
Query: 119 RVSFAVSLIHDPKILILDEPTVGLDP 144
R++ A +L+ +LI DEPT GLD
Sbjct: 134 RLAIAAALLSGKDLLIFDEPTSGLDY 159
>gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 252
Score = 67.3 bits (165), Expect = 3e-14
Identities = 40/151 (26%), Positives = 61/151 (40%), Gaps = 37/151 (24%)
Query: 19 YGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV----------RDIGYMPQ------ 62
G++G SG GK+TL + + GSI L + + R + + Q
Sbjct: 36 LGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSL 95
Query: 63 VGLMRSGALLAEDSPSYLLEYYNCSTLEDVFLYLCEQDQILFSLVGSESAF--------- 113
G +L+E P ++ L VG +F
Sbjct: 96 NPRRTVGRILSE--PLRPHGLSKSQ----------QRIAELLDQVGLPPSFLDRRPHELS 143
Query: 114 GGQQRRVSFAVSLIHDPKILILDEPTVGLDP 144
GGQ++R++ A +LI +PK+LILDEPT LD
Sbjct: 144 GGQRQRIAIARALIPEPKLLILDEPTSALDV 174
>gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems,
ATPase components [Amino acid transport and metabolism].
Length = 309
Score = 67.7 bits (166), Expect = 3e-14
Identities = 48/152 (31%), Positives = 69/152 (45%), Gaps = 41/152 (26%)
Query: 21 LLGPSGCGKTTLLSCIVNRL-RLDHGSISLSARTV---------RDIGY-MPQVGLMRSG 69
L+GPSG GKTT L I NRL G I + + R IGY + Q+GL
Sbjct: 32 LIGPSGSGKTTTLKMI-NRLIEPTSGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPH- 89
Query: 70 ALLAEDSPSYLLEYYNCSTLEDVFLYLCEQDQI------LFSLVGSESAF---------- 113
L ++ + + + L ++++I L LVG + +
Sbjct: 90 -LTVAENIATVPK-----------LLGWDKERIKKRADELLDLVGLDPSEYADRYPHELS 137
Query: 114 GGQQRRVSFAVSLIHDPKILILDEPTVGLDPV 145
GGQQ+RV A +L DP IL++DEP LDP+
Sbjct: 138 GGQQQRVGVARALAADPPILLMDEPFGALDPI 169
>gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter,
ATP-binding protein. This ABC transporter ATP-binding
protein is found in a number of genomes in operon-like
contexts strongly suggesting a substrate specificity for
2-aminoethylphosphonate (2-AEP). The characterized
PhnSTUV system is absent in the genomes in which this
system is found. These genomes encode systems for the
catabolism of 2-AEP, making the need for a
2-AEP-specific transporter likely [Transport and binding
proteins, Amino acids, peptides and amines].
Length = 353
Score = 67.0 bits (164), Expect = 7e-14
Identities = 52/142 (36%), Positives = 66/142 (46%), Gaps = 29/142 (20%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV-------RDIGYMPQVGLMRSGALL- 72
LLGPSGCGKTTLL I R G+I R + RD G + Q S AL
Sbjct: 35 LLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIVFQ-----SYALFP 89
Query: 73 ---AEDSPSYLLEYYNCSTLEDVFLYLCEQDQILFSLVG---SESAF-----GGQQRRVS 121
D+ +Y L+ E + E+ L LVG SE + GGQQ+RV+
Sbjct: 90 NLTVADNIAYGLKNRGMGRAE-----VAERVAELLDLVGLPGSERKYPGQLSGGQQQRVA 144
Query: 122 FAVSLIHDPKILILDEPTVGLD 143
A +L P +L+LDEP LD
Sbjct: 145 LARALATSPGLLLLDEPLSALD 166
>gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding
protein; Provisional.
Length = 241
Score = 65.3 bits (159), Expect = 1e-13
Identities = 49/154 (31%), Positives = 70/154 (45%), Gaps = 43/154 (27%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSIS----------LSARTVRDIGYMPQ-VGLMRS 68
GLLGP+G GKTT +V + D G+I L AR R IGY+PQ + R
Sbjct: 33 GLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRR 92
Query: 69 GA----LLA-------------EDSPSYLLEYYNCSTLEDVFLYLCEQDQILFSLVGSES 111
+ L+A ED + L+E ++ L D +S
Sbjct: 93 LSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSM---------------GQS 137
Query: 112 AFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPV 145
GG++RRV A +L +PK ++LDEP G+DP+
Sbjct: 138 LSGGERRRVEIARALAANPKFILLDEPFAGVDPI 171
>gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of
PrtD, subfamily C. This family represents the ABC
component of the protease secretion system PrtD, a
60-kDa integral membrane protein sharing 37% identity
with HlyB, the ABC component of the alpha-hemolysin
secretion pathway, in the C-terminal domain. They export
degradative enzymes by using a type I protein secretion
system and lack an N-terminal signal peptide, but
contain a C-terminal secretion signal. The Type I
secretion apparatus is made up of three components, an
ABC transporter, a membrane fusion protein (MFP), and an
outer membrane protein (OMP). For the HlyA transporter
complex, HlyB (ABC transporter) and HlyD (MFP) reside in
the inner membrane of E. coli. The OMP component is
TolC, which is thought to interact with the MFP to form
a continuous channel across the periplasm from the
cytoplasm to the exterior. HlyB belongs to the family of
ABC transporters, which are ubiquitous, ATP-dependent
transmembrane pumps or channels. The spectrum of
transport substrates ranges from inorganic ions,
nutrients such as amino acids, sugars, or peptides,
hydrophobic drugs, to large polypeptides, such as HlyA.
Length = 173
Score = 63.8 bits (156), Expect = 2e-13
Identities = 38/126 (30%), Positives = 54/126 (42%), Gaps = 29/126 (23%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAEDSPSY 79
++GPSG GK+TL I+ LR G + L + Q G + Y
Sbjct: 32 AIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADIS------QWDPNELGDHVG-----Y 80
Query: 80 LLEYYNCSTLEDVFLYLCEQDQILFSLVGSESAF-GGQQRRVSFAVSLIHDPKILILDEP 138
L QD LFS +E+ GGQ++R+ A +L +P+IL+LDEP
Sbjct: 81 LP-----------------QDDELFSGSIAENILSGGQRQRLGLARALYGNPRILVLDEP 123
Query: 139 TVGLDP 144
LD
Sbjct: 124 NSHLDV 129
>gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport
system. The ABC transporters belonging to the YhbG
family are similar to members of the Mj1267_LivG family,
which is involved in the transport of branched-chain
amino acids. The genes yhbG and yhbN are located in a
single operon and may function together in cell envelope
during biogenesis. YhbG is the putative ATP-binding
cassette component and YhbN is the putative
periplasmic-binding protein. Depletion of each gene
product leads to growth arrest, irreversible cell damage
and loss of viability in E. coli. The YhbG homolog
(NtrA) is essential in Rhizobium meliloti, a symbiotic
nitrogen-fixing bacterium.
Length = 232
Score = 64.5 bits (158), Expect = 2e-13
Identities = 50/142 (35%), Positives = 67/142 (47%), Gaps = 20/142 (14%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISL----------SARTVRDIGYMPQ-VGLMRS 68
GLLGP+G GKTT IV ++ D G I L R IGY+PQ + R
Sbjct: 30 GLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRK 89
Query: 69 GALLAEDSPSYLLEYYNCSTLE-----DVFLYLCEQDQILFSLVGSESAFGGQQRRVSFA 123
L E++ +LE S E + L + S S S GG++RRV A
Sbjct: 90 --LTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLS--GGERRRVEIA 145
Query: 124 VSLIHDPKILILDEPTVGLDPV 145
+L +PK L+LDEP G+DP+
Sbjct: 146 RALATNPKFLLLDEPFAGVDPI 167
>gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of
the Na+ transporter. NatA is the ATPase component of a
bacterial ABC-type Na+ transport system called NatAB,
which catalyzes ATP-dependent electrogenic Na+ extrusion
without mechanically coupled proton or K+ uptake. NatB
possess six putative membrane spanning regions at its
C-terminus. In B. subtilis, NatAB is inducible by agents
such as ethanol and protonophores, which lower the
proton-motive force across the membrane. The closest
sequence similarity to NatA is exhibited by DrrA of the
two-component daunorubicin- and doxorubicin-efflux
system. Hence, the functional NatAB is presumably
assembled with two copies of a single ATP-binding
protein and a single integral membrane protein.
Length = 218
Score = 64.3 bits (157), Expect = 2e-13
Identities = 42/146 (28%), Positives = 63/146 (43%), Gaps = 32/146 (21%)
Query: 19 YGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSA-RTVRDIGYMPQVGLMRSGALLAED-- 75
GLLGP+G GKTT L + L D G ++ V++ P R G +
Sbjct: 34 TGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKE----PAEARRRLGFVSDSTGL 89
Query: 76 ----SPSYLLEYYNCSTLEDVFLYLCEQDQI------LFSLVG--------SESAFGGQQ 117
+ LEY+ LY + D++ L +G G +
Sbjct: 90 YDRLTARENLEYFAG-------LYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMR 142
Query: 118 RRVSFAVSLIHDPKILILDEPTVGLD 143
++V+ A +L+HDP +L+LDEPT GLD
Sbjct: 143 QKVAIARALVHDPPVLLLDEPTTGLD 168
>gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components
[Carbohydrate transport and metabolism].
Length = 338
Score = 64.6 bits (158), Expect = 4e-13
Identities = 43/142 (30%), Positives = 61/142 (42%), Gaps = 23/142 (16%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV-------RDIGYMPQVGLMRSGALL- 72
LLGPSGCGK+TLL I G I + R V R I + Q + AL
Sbjct: 34 LLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVFQ-----NYALYP 88
Query: 73 ---AEDSPSYLLEYYNCSTLE-----DVFLYLCEQDQILFSLVGSESAFGGQQRRVSFAV 124
++ ++ L+ E L + +L S GGQ++RV+ A
Sbjct: 89 HMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLS--GGQRQRVALAR 146
Query: 125 SLIHDPKILILDEPTVGLDPVL 146
+L+ PK+ +LDEP LD L
Sbjct: 147 ALVRKPKVFLLDEPLSNLDAKL 168
>gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional.
Length = 306
Score = 64.4 bits (157), Expect = 4e-13
Identities = 46/138 (33%), Positives = 68/138 (49%), Gaps = 14/138 (10%)
Query: 19 YGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV--------RDIGYMPQVGLMRSGA 70
+GLLGP+G GKTT L ++ D GSISL V + +G +PQ +
Sbjct: 36 FGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDF 95
Query: 71 LLAED----SPSYLLEYYNCSTLEDVFLYLCEQDQILFSLVGSESAFGGQQRRVSFAVSL 126
+ E+ + L L L + + + VG S GG +RR++ A +L
Sbjct: 96 TVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELS--GGMKRRLTLARAL 153
Query: 127 IHDPKILILDEPTVGLDP 144
++DP +L+LDEPT GLDP
Sbjct: 154 VNDPDVLVLDEPTTGLDP 171
>gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding
protein. Phosphonates are a class of
phosphorus-containing organic compound with a stable
direct C-P bond rather than a C-O-P linkage. A number of
bacterial species have operons, typically about 14 genes
in size, with genes for ATP-dependent transport of
phosphonates, degradation, and regulation of the
expression of the system. Members of this protein family
are the ATP-binding cassette component of tripartite ABC
transporters of phosphonates [Transport and binding
proteins, Anions].
Length = 243
Score = 63.5 bits (155), Expect = 5e-13
Identities = 45/153 (29%), Positives = 66/153 (43%), Gaps = 28/153 (18%)
Query: 20 GLLGPSGCGKTTLLSCIVNRL-RLDHGSISLSARTVRDIGYMPQVGLMRSGALLAED--- 75
++GPSG GK+TLL CI NRL GSI L + + L R ++ +
Sbjct: 32 AIIGPSGAGKSTLLRCI-NRLVEPSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNL 90
Query: 76 -SPSYLLEYYNC--------STLEDVFLYLCEQDQI----LFSLVG-SESAF-------G 114
+LE N T + E+D+ VG ++ A+ G
Sbjct: 91 IERLTVLE--NVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSG 148
Query: 115 GQQRRVSFAVSLIHDPKILILDEPTVGLDPVLS 147
GQQ+RV+ A +L P +++ DEP LDP S
Sbjct: 149 GQQQRVAIARALAQQPDLILADEPIASLDPKTS 181
>gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation
protein NodI. This protein is required for normal
nodulation by nitrogen-fixing root nodule bacteria such
as Mesorhizobium loti. It is a member of the family of
ABC transporter ATP binding proteins and works with NodJ
to export a nodulation signal molecule. This model does
not recognize the highly divergent NodI from
Azorhizobium caulinodans [Cellular processes, Other,
Transport and binding proteins, Other].
Length = 303
Score = 64.2 bits (156), Expect = 6e-13
Identities = 51/155 (32%), Positives = 81/155 (52%), Gaps = 25/155 (16%)
Query: 9 LNTVIFGVTA---YGLLGPSGCGKTTLLSCIVNRLRLDHGSISL-------SARTVR-DI 57
+N + F + +GLLGP+G GK+T+ ++ + D G I++ AR R I
Sbjct: 20 VNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAI 79
Query: 58 GYMPQVGLMRSGALLAEDSPSYLLEYYNCST--LEDVFLYLCEQDQILFSLVGSESAF-- 113
G +PQ + + E+ + Y+ ST +E V L E F+ + S++
Sbjct: 80 GVVPQFDNLDPEFTVRENLLVF-GRYFGMSTREIEAVIPSLLE-----FARLESKADVRV 133
Query: 114 ----GGQQRRVSFAVSLIHDPKILILDEPTVGLDP 144
GG +RR++ A +LI+DP++LILDEPT GLDP
Sbjct: 134 ALLSGGMKRRLTLARALINDPQLLILDEPTTGLDP 168
>gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI;
Provisional.
Length = 340
Score = 64.1 bits (156), Expect = 6e-13
Identities = 56/168 (33%), Positives = 85/168 (50%), Gaps = 30/168 (17%)
Query: 1 MADVSASSLNTVI-----FGVTA---YGLLGPSGCGKTTLLSCIVNRLRLDHGSISL--- 49
+A VS S + + F V + +GLLGP+G GK+T+ I+ D G I++
Sbjct: 44 LAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGV 103
Query: 50 ----SARTVR-DIGYMPQVGLMRSGALLAEDSPSYLLEYYNCST--LEDVFLYLCEQDQI 102
AR R IG +PQ + + E+ + Y+ ST +E V L E
Sbjct: 104 PVPARARLARARIGVVPQFDNLDLEFTVRENLLVFG-RYFGMSTREIEAVIPSLLE---- 158
Query: 103 LFSLVGSESAF------GGQQRRVSFAVSLIHDPKILILDEPTVGLDP 144
F+ + S++ GG +RR++ A +LI+DP++LILDEPT GLDP
Sbjct: 159 -FARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDP 205
>gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component
[Energy production and conversion / Inorganic ion
transport and metabolism].
Length = 245
Score = 63.6 bits (155), Expect = 6e-13
Identities = 46/136 (33%), Positives = 65/136 (47%), Gaps = 14/136 (10%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISL-SARTVRD-IGYMPQVGLMRSGA-----LL 72
GLLG +G GKTTLL I L D G +++ TVRD ++G++ L
Sbjct: 32 GLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLT 91
Query: 73 AEDSPSYLLEYYNCSTLE-----DVFLYLCEQDQILFSLVGSESAFGGQQRRVSFAVSLI 127
A ++ Y S E + + L VG S G +++V+ A +L+
Sbjct: 92 ARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFST--GMKQKVAIARALV 149
Query: 128 HDPKILILDEPTVGLD 143
HDP IL+LDEPT GLD
Sbjct: 150 HDPSILVLDEPTSGLD 165
>gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of
branched-chain amino acid transporter. LivF (TM1139) is
part of the LIV-I bacterial ABC-type two-component
transport system that imports neutral, branched-chain
amino acids. The E. coli branched-chain amino acid
transporter comprises a heterodimer of ABC transporters
(LivF and LivG), a heterodimer of six-helix TM domains
(LivM and LivH), and one of two alternative soluble
periplasmic substrate binding proteins (LivK or LivJ).
ABC transporters are a large family of proteins involved
in the transport of a wide variety of different
compounds, like sugars, ions, peptides, and more complex
organic molecules.
Length = 222
Score = 62.1 bits (152), Expect = 1e-12
Identities = 44/147 (29%), Positives = 64/147 (43%), Gaps = 29/147 (19%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISL----------SARTVRDIGYMPQV-----G 64
LLG +G GKTTLL I+ L GSI R IGY+P+
Sbjct: 30 ALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPE 89
Query: 65 L-----MRSGALLAEDSPSYLLEYYNCSTLEDVFLYLCEQDQILFSLVGSESAFGGQQRR 119
L + GA + + LE V+ + L G+ S GG+Q+
Sbjct: 90 LTVEENLLLGAYARRRAKRK-------ARLERVYELFPRLKERRKQLAGTLS--GGEQQM 140
Query: 120 VSFAVSLIHDPKILILDEPTVGLDPVL 146
++ A +L+ PK+L+LDEP+ GL P +
Sbjct: 141 LAIARALMSRPKLLLLDEPSEGLAPKI 167
>gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd
biosynthesis, fused ATPase and permease components
[Energy production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 573
Score = 63.5 bits (155), Expect = 1e-12
Identities = 39/147 (26%), Positives = 61/147 (41%), Gaps = 29/147 (19%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRD---------IGYMPQ-----VGLM 66
+LG SG GK+TLL + GSI+L+ + I + Q G +
Sbjct: 369 ILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTL 428
Query: 67 RSGALLAEDSPSYLLEYYNCSTLEDVFLYLCEQDQILFSLVGSESAF--------GGQQR 118
R LA S L + + + + G + GG++R
Sbjct: 429 RDNLRLANPDASD-------EELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERR 481
Query: 119 RVSFAVSLIHDPKILILDEPTVGLDPV 145
R++ A +L+HD + +LDEPT GLDP+
Sbjct: 482 RLALARALLHDAPLWLLDEPTEGLDPI 508
>gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd
biosynthesis, ATPase and permease components [Energy
production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 559
Score = 63.4 bits (155), Expect = 2e-12
Identities = 45/159 (28%), Positives = 71/159 (44%), Gaps = 20/159 (12%)
Query: 3 DVSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRD------ 56
+ S LN I L+G SG GK+TLL+ ++ L G I ++ +RD
Sbjct: 334 KPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAW 393
Query: 57 ---IGYMPQ-----VGLMRSGALLAEDSPSYLLEYYNCSTLEDVFLY-LCEQDQILFSLV 107
I ++ Q G +R LLA S + + L+ L + L +++
Sbjct: 394 RKQISWVSQNPYLFAGTIRENILLARPDAS---DEEIIAALDQAGLLEFVPKPDGLDTVI 450
Query: 108 GSESAF--GGQQRRVSFAVSLIHDPKILILDEPTVGLDP 144
G A GGQ +R++ A +L+ +L+LDEPT LD
Sbjct: 451 GEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDA 489
>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport
systems, contain duplicated ATPase [General function
prediction only].
Length = 539
Score = 63.0 bits (154), Expect = 2e-12
Identities = 37/166 (22%), Positives = 56/166 (33%), Gaps = 54/166 (32%)
Query: 18 AYGLLGPSGCGKTTLLSCIVN----RLRLDHGSISLSARTV-------------RDIGYM 60
G++G SG GK+TL ++ R+ G + L R + + I +
Sbjct: 37 ILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMI 96
Query: 61 PQVGLMRSGALLAEDSPSYLLEYYNCSTLEDVFLYLCE----------QDQI--LFSLVG 108
Q L +P T+ D + + L VG
Sbjct: 97 FQ----DPMTSL---NPVM--------TIGDQIREALRLHGKGSRAEARKRAVELLEQVG 141
Query: 109 SESAF----------GGQQRRVSFAVSLIHDPKILILDEPTVGLDP 144
GG ++RV A++L PK+LI DEPT LD
Sbjct: 142 LPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDV 187
Score = 57.6 bits (140), Expect = 2e-10
Identities = 42/147 (28%), Positives = 59/147 (40%), Gaps = 23/147 (15%)
Query: 19 YGLLGPSGCGKTTLLSCIVNRLRLDHGSI-------SLSARTVRDIGYMPQVGLMRSGAL 71
GL+G SG GK+TL + L GSI L+ +R + Q+ +
Sbjct: 320 LGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSS 379
Query: 72 LAEDSPSYLLEYYNCSTLEDVFLYLC-EQDQI---LFSLVGSESAF---------GGQQR 118
L +P + L E+ L LVG F GGQ++
Sbjct: 380 L---NPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQ 436
Query: 119 RVSFAVSLIHDPKILILDEPTVGLDPV 145
RV+ A +L +PK+LILDEP LD
Sbjct: 437 RVAIARALALEPKLLILDEPVSALDVS 463
>gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 339
Score = 62.7 bits (153), Expect = 2e-12
Identities = 47/149 (31%), Positives = 69/149 (46%), Gaps = 32/149 (21%)
Query: 19 YGLLGPSGCGKTTLLSCIVNRL-RLDHGSIS--------LSARTVR----DIGYMPQ-VG 64
+G++G SG GK+TLL I N L R GS+ LS +R IG + Q
Sbjct: 35 FGIIGYSGAGKSTLLRLI-NLLERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFN 93
Query: 65 LMRSGALLAEDSPSYLLEYYNCSTLEDVFLYLCEQDQI-LFSLVGSE---SAF-----GG 115
L+ + ++ ++ LE E +Q L LVG + GG
Sbjct: 94 LL--SSRTVFENVAFPLELAGVPKAE------IKQRVAELLELVGLSDKADRYPAQLSGG 145
Query: 116 QQRRVSFAVSLIHDPKILILDEPTVGLDP 144
Q++RV+ A +L ++PKIL+ DE T LDP
Sbjct: 146 QKQRVAIARALANNPKILLCDEATSALDP 174
>gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter
membrane/ATP-binding component; Reviewed.
Length = 574
Score = 62.5 bits (153), Expect = 3e-12
Identities = 50/146 (34%), Positives = 70/146 (47%), Gaps = 32/146 (21%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRD---------IGYMPQ-----VGLM 66
LLG +GCGK+TLL + G I L+ + + D I + Q +
Sbjct: 371 LLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATL 430
Query: 67 RSGALLAEDSPS--YLLEYYNCSTLEDVFL-YLCEQDQILFSLVG------SESAFGGQQ 117
R LLA + S L+E L+ V L L E D+ L + +G S GG+Q
Sbjct: 431 RDNLLLAAPNASDEALIE-----VLQQVGLEKLLEDDKGLNAWLGEGGRQLS----GGEQ 481
Query: 118 RRVSFAVSLIHDPKILILDEPTVGLD 143
RR+ A +L+HD +L+LDEPT GLD
Sbjct: 482 RRLGIARALLHDAPLLLLDEPTEGLD 507
>gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 223
Score = 61.4 bits (149), Expect = 3e-12
Identities = 40/135 (29%), Positives = 62/135 (45%), Gaps = 13/135 (9%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIG---YMPQVG-LMRSGALLA--- 73
+ GPSGCGK+TLL + + + G++ V + Y QV ++ AL
Sbjct: 34 ITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTV 93
Query: 74 EDSPSYLLEYYNCSTLEDVFLYLCEQ----DQILFSLVGSESAFGGQQRRVSFAVSLIHD 129
ED+ + + N L L + D IL + S GG+++R++ +L
Sbjct: 94 EDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELS--GGEKQRIALIRNLQFM 151
Query: 130 PKILILDEPTVGLDP 144
PKIL+LDE T LD
Sbjct: 152 PKILLLDEITSALDE 166
>gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the
molybdate transporter. Archaeal protein closely related
to ModC. ModC is an ABC-type transporter and the ATPase
component of a molybdate transport system that also
includes the periplasmic binding protein ModA and the
membrane protein ModB. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 235
Score = 61.6 bits (150), Expect = 3e-12
Identities = 45/140 (32%), Positives = 69/140 (49%), Gaps = 23/140 (16%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV-------RDIGYMPQVGLMRSGALLA 73
+LGP+G GK+ LL I ++ D G I L+ + + RDI Y+PQ + AL
Sbjct: 30 ILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVPQ-----NYALFP 84
Query: 74 EDSPSYLLEY------YNCSTLEDVFLYLCEQ---DQILFSLVGSESAFGGQQRRVSFAV 124
+ + Y + +E L + E D +L + S GG+Q+RV+ A
Sbjct: 85 HMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLS--GGEQQRVAIAR 142
Query: 125 SLIHDPKILILDEPTVGLDP 144
+L+ +PKIL+LDEP LD
Sbjct: 143 ALVVNPKILLLDEPFSALDV 162
>gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 241
Score = 61.4 bits (149), Expect = 4e-12
Identities = 48/143 (33%), Positives = 73/143 (51%), Gaps = 27/143 (18%)
Query: 19 YGLLGPSGCGKTTLLSCIVNRLRLD--HGSISLSARTVRDIGYMP---QVGLMRSGALLA 73
Y ++GPSG GK+TL+ I NRL +D GSI + ++ I + ++G++ L
Sbjct: 32 YTIVGPSGAGKSTLIKLI-NRL-IDPTEGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLF 89
Query: 74 EDSPSYLLEYYNCSTLE---DVFLYLCEQDQILFSLVGSESAF---------GGQQRRVS 121
E + +EY E DV YL S+VG + GG+ +RVS
Sbjct: 90 EGTVKDNIEYGPMLKGEKNVDVEYYL--------SIVGLNKEYATRDVKNLSGGEAQRVS 141
Query: 122 FAVSLIHDPKILILDEPTVGLDP 144
A +L ++P++L+LDEPT LDP
Sbjct: 142 IARTLANNPEVLLLDEPTSALDP 164
>gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of
the osmoprotectant transporter. OpuCA is a the ATP
binding component of a bacterial solute transporter that
serves a protective role to cells growing in a
hyperosmolar environment. ABC (ATP-binding cassette)
transporter nucleotide-binding domain; ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds, like sugars,
ions, peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition, to the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 242
Score = 61.2 bits (149), Expect = 4e-12
Identities = 50/159 (31%), Positives = 71/159 (44%), Gaps = 53/159 (33%)
Query: 21 LLGPSGCGKTTLLSCIVNRL-RLDHGSISLSARTV---------RDIGY-MPQVGLM--- 66
L+GPSG GKTT + I NRL G I + + R IGY + Q+GL
Sbjct: 32 LIGPSGSGKTTTMKMI-NRLIEPTSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHM 90
Query: 67 ---RSGALLAEDSPSYLLEYYNCSTLEDVFLYLCEQDQI------LFSLVGSESA----- 112
+ AL+ P LL++ +++I L +LVG + A
Sbjct: 91 TVEENIALV----PK-LLKW--------------PKEKIRERADELLALVGLDPAEFADR 131
Query: 113 -----FGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVL 146
GGQQ+RV A +L DP +L++DEP LDP+
Sbjct: 132 YPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPIT 170
>gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase
component [General function prediction only].
Length = 243
Score = 61.1 bits (149), Expect = 5e-12
Identities = 47/146 (32%), Positives = 62/146 (42%), Gaps = 26/146 (17%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISLS----------ARTVRDIGYMPQV-----G 64
GLLGP+G GKTT IV +R D G I L R IGY+PQ
Sbjct: 34 GLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIGYLPQEASIFRK 93
Query: 65 LMRSGALLA-----EDSPSYLLEYYNCSTLEDVFLYLCEQDQILFSLVGSESAFGGQQRR 119
L ++A E L + F + S S S GG++RR
Sbjct: 94 LTVEDNIMAVLEIREKDLKKAERKEELDALLEEF----HITHLRDSKAYSLS--GGERRR 147
Query: 120 VSFAVSLIHDPKILILDEPTVGLDPV 145
V A +L +PK ++LDEP G+DP+
Sbjct: 148 VEIARALAANPKFILLDEPFAGVDPI 173
>gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE. This
model describes FtsE, a member of the ABC transporter
ATP-binding protein family. This protein, and its
permease partner FtsX, localize to the division site. In
a number of species, the ftsEX gene pair is located next
to FtsY, the signal recognition particle-docking protein
[Cellular processes, Cell division].
Length = 214
Score = 60.3 bits (147), Expect = 5e-12
Identities = 43/147 (29%), Positives = 67/147 (45%), Gaps = 26/147 (17%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDI--GYMPQVGLMRSGALLAEDSPS 78
L GPSG GKTTLL + L G + ++ V + +P L R ++ +D
Sbjct: 33 LTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPL--LRRRIGVVFQD--- 87
Query: 79 YLLEYYNCSTLEDVFL-----YLCEQD-----QILFSLVG-SESAF-------GGQQRRV 120
+ L + + E+V L E++ VG A GG+Q+RV
Sbjct: 88 FRL-LPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRV 146
Query: 121 SFAVSLIHDPKILILDEPTVGLDPVLS 147
+ A ++++ P +L+ DEPT LDP LS
Sbjct: 147 AIARAIVNSPPLLLADEPTGNLDPDLS 173
>gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase
component [Inorganic ion transport and metabolism].
Length = 345
Score = 61.6 bits (150), Expect = 5e-12
Identities = 44/139 (31%), Positives = 63/139 (45%), Gaps = 14/139 (10%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQ----VGLMRSGALL--- 72
LLGPSG GK+TLL I D G I L+ R + D+ + VG + L
Sbjct: 32 ALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPH 91
Query: 73 --AEDSPSYLLEYYNCSTLEDVFLYLCEQDQILFSLVGSESAF-----GGQQRRVSFAVS 125
D+ ++ L+ E E+ L L G + GGQ++RV+ A +
Sbjct: 92 MTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARA 151
Query: 126 LIHDPKILILDEPTVGLDP 144
L +PK+L+LDEP LD
Sbjct: 152 LAVEPKVLLLDEPFGALDA 170
>gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an
uncharacterized transporter similar in sequence to NatA.
NatA is the ATPase component of a bacterial ABC-type
Na+ transport system called NatAB, which catalyzes
ATP-dependent electrogenic Na+ extrusion without
mechanically coupled to proton or K+ uptake. NatB
possess six putative membrane spanning regions at its
C-terminus. In B. subtilis, NatAB is inducible by agents
such as ethanol and protonophores, which lower the
proton-motive force across the membrane. The closest
sequence similarity to NatA is exhibited by DrrA of the
two-component daunorubicin- and doxorubicin-efflux
system. Hence, the functional NatAB is presumably
assembled with two copies of the single ATP-binding
protein and the single integral membrane protein.
Length = 236
Score = 60.8 bits (148), Expect = 6e-12
Identities = 41/137 (29%), Positives = 66/137 (48%), Gaps = 15/137 (10%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISLSART--VRDIGYMPQVGL-MRSGALLAEDS 76
G +GP+G GKTT L + L+ G + ++ R ++ ++G+ L D
Sbjct: 51 GFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDL 110
Query: 77 P---SYLL--EYYNCSTLE-----DVFLYLCEQDQILFSLVGSESAFGGQQRRVSFAVSL 126
P S+ L Y+ D L + +++L + V S GQ+ R A +L
Sbjct: 111 PVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSL--GQRMRAEIAAAL 168
Query: 127 IHDPKILILDEPTVGLD 143
+H+P+IL LDEPT+GLD
Sbjct: 169 LHEPEILFLDEPTIGLD 185
>gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit;
Provisional.
Length = 255
Score = 60.5 bits (147), Expect = 7e-12
Identities = 45/131 (34%), Positives = 69/131 (52%), Gaps = 12/131 (9%)
Query: 22 LGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALL----AEDSP 77
LGPSGCGKTTLL+ I + HGSI+L + V G V + ++ LL +D+
Sbjct: 33 LGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGV-VFQNEGLLPWRNVQDNV 91
Query: 78 SYLLEYYNCSTLEDVFLYLCEQDQILFSLVGSESAF-----GGQQRRVSFAVSLIHDPKI 132
++ L+ ++ L + Q L G+E + GGQ++RV A +L +P++
Sbjct: 92 AFGLQLAGVEKMQR--LEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQL 149
Query: 133 LILDEPTVGLD 143
L+LDEP LD
Sbjct: 150 LLLDEPFGALD 160
>gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA
family. Members of this protein family are found mostly
in the Cyanobacteria, but also in the Planctomycetes.
Cyanobacterial examples are involved in heterocyst
formation, by which some fraction of members of the
colony undergo a developmental change and become capable
of nitrogen fixation. The DevBCA proteins are thought
export of either heterocyst-specific glycolipids or an
enzyme essential for formation of the laminated layer
found in heterocysts.
Length = 220
Score = 60.0 bits (146), Expect = 9e-12
Identities = 44/144 (30%), Positives = 66/144 (45%), Gaps = 27/144 (18%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSISL--------SARTV----RDIGYMPQV-GLMR 67
L GPSG GKTTLL+ I + GS+ + S + + R+IGY+ Q L+
Sbjct: 36 LTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLG 95
Query: 68 SGALLAEDSPSYLLEYYNCSTLEDVFLYLCEQDQILFSLVGSESAF--------GGQQRR 119
L A + LE + ++ +L VG GGQ++R
Sbjct: 96 F--LTARQNVQMALELQPNLSYQEA---RERARAML-EAVGLGDHLDYYPHNLSGGQKQR 149
Query: 120 VSFAVSLIHDPKILILDEPTVGLD 143
V+ A +L+H PK+++ DEPT LD
Sbjct: 150 VAIARALVHRPKLVLADEPTAALD 173
>gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 235
Score = 60.0 bits (146), Expect = 1e-11
Identities = 46/152 (30%), Positives = 63/152 (41%), Gaps = 39/152 (25%)
Query: 19 YGLLGPSGCGKTTLLSCIV-------NRLRLDHGSISLSART---VRDIGY--------- 59
L+GP+G GK+TLL + + +D S + +G
Sbjct: 33 VLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQL 92
Query: 60 -MPQV------GLMRSGALLAEDSPSYLLEYYNCSTLEDVFLYLCEQDQILFSLVGSESA 112
P V GL G L E+ + E LE V L D+ F+L G
Sbjct: 93 FGPTVEDEVAFGLENLG-LPREEIEERVAEA-----LELVGLEELL-DRPPFNLSG---- 141
Query: 113 FGGQQRRVSFAVSLIHDPKILILDEPTVGLDP 144
GQ++RV+ A L P+IL+LDEPT GLDP
Sbjct: 142 --GQKQRVAIAGVLAMGPEILLLDEPTAGLDP 171
>gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the
carbohydrate and solute transporters-like. This family
is comprised of proteins involved in the transport of
apparently unrelated solutes and proteins specific for
di- and oligosaccharides and polyols. ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds, like sugars,
ions, peptides and more complex organic molecules. The
nucleotide-binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 213
Score = 59.5 bits (145), Expect = 1e-11
Identities = 44/161 (27%), Positives = 55/161 (34%), Gaps = 61/161 (37%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV-------RDIGYMPQVGLMRSGALLA 73
LLGPSGCGKTTLL I R D G I + R V R+IG + Q AL
Sbjct: 31 LLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQ-----DYAL-- 83
Query: 74 EDSPSYLLEYYNCSTLEDVFLYLCEQDQILFSLVGSESAFGGQQRRV------------- 120
F +L + I F L + RV
Sbjct: 84 -------------------FPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLL 124
Query: 121 ---------------SFAVSLIHDPKILILDEPTVGLDPVL 146
+ A +L +P +L+LDEP LD L
Sbjct: 125 NRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKL 165
>gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC
transporter, lactococcin 972 group. A gene pair with a
fairly wide distribution consists of a polypeptide
related to the lactococcin 972 (see TIGR01653) and
multiple-membrane-spanning putative immunity protein
(see TIGR01654). This model represents a small clade
within the ABC transporters that regularly are found
adjacent to these bacteriocin system gene pairs and are
likely serve as export proteins [Cellular processes,
Toxin production and resistance, Transport and binding
proteins, Unknown substrate].
Length = 206
Score = 59.2 bits (144), Expect = 1e-11
Identities = 44/153 (28%), Positives = 68/153 (44%), Gaps = 39/153 (25%)
Query: 19 YGLLGPSGCGKTTLLSCIVNRLRLDHGSI-----------SLSARTVR--DIGYMPQVGL 65
Y ++G SG GK+TLL+ I + D G + S A R +GY L
Sbjct: 27 YAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQETPPLNSKKASKFRREKLGY-----L 81
Query: 66 MRSGALLAEDSPSYLLE----YYNCS----------TLEDVFLYLCEQDQILFSLVGSES 111
++ AL+ ++ L+ Y S LE V L L Q ++ L G
Sbjct: 82 FQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLK-LKQKIYELSG--- 137
Query: 112 AFGGQQRRVSFAVSLIHDPKILILDEPTVGLDP 144
G+Q+RV+ A +++ P +++ DEPT LDP
Sbjct: 138 ---GEQQRVALARAILKPPPLILADEPTGSLDP 167
>gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component
of branched chain amino acids transport system. The
Mj1267/LivG ABC transporter subfamily is involved in the
transport of the hydrophobic amino acids leucine,
isoleucine and valine. MJ1267 is a branched-chain amino
acid transporter with 29% similarity to both the LivF
and LivG components of the E. coli branched-chain amino
acid transporter. MJ1267 contains an insertion from
residues 114 to 123 characteristic of LivG
(Leucine-Isoleucine-Valine) homologs. The branched-chain
amino acid transporter from E. coli comprises a
heterodimer of ABCs (LivF and LivG), a heterodimer of
six-helix TM domains (LivM and LivH), and one of two
alternative soluble periplasmic substrate binding
proteins (LivK or LivJ).
Length = 236
Score = 59.4 bits (145), Expect = 2e-11
Identities = 45/157 (28%), Positives = 63/157 (40%), Gaps = 36/157 (22%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMP-----QVGLMRS------ 68
GL+GP+G GKTTL + I LR GS+ DI +P ++G+ R+
Sbjct: 30 GLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGE---DITGLPPHEIARLGIGRTFQIPRL 86
Query: 69 ------------GALLAEDSPSYLLEYYNCSTLEDV------FLYLCEQDQILFSLVGSE 110
A + S LL + L + G
Sbjct: 87 FPELTVLENVMVAAQA--RTGSGLLLARARREEREARERAEELLERVGLADLADRPAGEL 144
Query: 111 SAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLS 147
S GQQRR+ A +L DPK+L+LDEP GL+P +
Sbjct: 145 S--YGQQRRLEIARALATDPKLLLLDEPAAGLNPEET 179
>gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit. The
gene pair cydCD encodes an ABC-family transporter in
which each gene contains an N-terminal membrane-spanning
domain (pfam00664) and a C-terminal ATP-binding domain
(pfam00005). In E. coli these genes were discovered as
mutants which caused the terminal heme-copper oxidase
complex cytochrome bd to fail to assemble. Recent work
has shown that the transporter is involved in export of
redox-active thiol compounds such as cysteine and
glutathione. The linkage to assembly of the cytochrome
bd complex is further supported by the conserved operon
structure found outside the gammaproteobacteria
(cydABCD) containing both the transporter and oxidase
genes components. The genes used as the seed members for
this model are all either found in the
gammproteobacterial context or the CydABCD context. All
members of this family scoring above trusted at the time
of its creation were from genomes which encode a
cytochrome bd complex.
Length = 530
Score = 60.1 bits (146), Expect = 2e-11
Identities = 42/142 (29%), Positives = 68/142 (47%), Gaps = 21/142 (14%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAED----- 75
+LGPSG GK+TLL+ + L G ++L V + Q + R ++ A+D
Sbjct: 366 ILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSL---DQDEVRRRVSVCAQDAHLFD 422
Query: 76 ---SPSYLLEYYNCS------TLEDVFL--YLCEQDQILFSLVGSESAF--GGQQRRVSF 122
+ L + + LE V L +L L +++G A GG+++R++
Sbjct: 423 TTVRENLRLARPDATDEELWAALERVGLADWLRALPDGLDTVLGEGGARLSGGERQRLAL 482
Query: 123 AVSLIHDPKILILDEPTVGLDP 144
A +L+ D IL+LDEPT LD
Sbjct: 483 ARALLADAPILLLDEPTEHLDA 504
>gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB
family. Type I protein secretion is a system in some
Gram-negative bacteria to export proteins (often
proteases) across both inner and outer membranes to the
extracellular medium. This is one of three proteins of
the type I secretion apparatus. Targeted proteins are
not cleaved at the N-terminus, but rather carry signals
located toward the extreme C-terminus to direct type I
secretion. This model is related to models TIGR01842 and
TIGR01846, and to bacteriocin ABC transporters that
cleave their substrates during export [Protein fate,
Protein and peptide secretion and trafficking, Cellular
processes, Pathogenesis].
Length = 694
Score = 59.9 bits (146), Expect = 2e-11
Identities = 41/145 (28%), Positives = 66/145 (45%), Gaps = 27/145 (18%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISL---SARTV------RDIGYMPQ-----VGL 65
++G G GK+TLL ++ + GS+ L R + R+IGY+PQ G
Sbjct: 495 AIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGT 554
Query: 66 MR----SGALLAEDSPSYLLEYYNCSTLEDVFLYLCEQDQILFSLV---GSESAFGGQQR 118
+R GA A+D +L + + + + + S GGQ++
Sbjct: 555 LRDNIALGAPYADDEE--ILRAAELAGVTE----FVRRHPDGLDMQIGERGRSLSGGQRQ 608
Query: 119 RVSFAVSLIHDPKILILDEPTVGLD 143
V+ A +L+ DP IL+LDEPT +D
Sbjct: 609 AVALARALLRDPPILLLDEPTSAMD 633
>gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter. This
model describes ABC-type bacteriocin transporter. The
amino terminal domain (pfam03412) processes the
N-terminal leader peptide from the bacteriocin while
C-terminal domains resemble ABC transporter membrane
protein and ATP-binding cassette domain. In general,
bacteriocins are agents which are responsible for
killing or inhibiting the closely related species or
even different strains of the same species. Bacteriocins
are usually encoded by bacterial plasmids. Bacteriocins
are named after the species and hence in literature one
encounters various names e.g., leucocin from Leuconostic
geldium; pedicocin from Pedicoccus acidilactici; sakacin
from Lactobacillus sake etc [Protein fate, Protein and
peptide secretion and trafficking, Protein fate, Protein
modification and repair, Transport and binding proteins,
Other].
Length = 708
Score = 59.8 bits (145), Expect = 3e-11
Identities = 42/144 (29%), Positives = 66/144 (45%), Gaps = 26/144 (18%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRD---------IGYMPQVGLMRSGAL 71
++G SG GK+TL +V + G I L+ +++D I Y+PQ + SG++
Sbjct: 505 IVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSI 564
Query: 72 LAEDSPSYLLEYYNCSTLEDVFLYLC---------EQDQILFSLVGSESAF---GGQQRR 119
L LL + +D C E + + SE GGQ++R
Sbjct: 565 LEN-----LLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQR 619
Query: 120 VSFAVSLIHDPKILILDEPTVGLD 143
++ A +L+ D K+LILDE T LD
Sbjct: 620 IALARALLTDSKVLILDESTSNLD 643
>gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell
division and chromosome partitioning].
Length = 223
Score = 57.6 bits (140), Expect = 6e-11
Identities = 43/150 (28%), Positives = 68/150 (45%), Gaps = 30/150 (20%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMP--QVGLMRS--GALLAEDS 76
L GPSG GK+TLL I R G I ++ D+ + ++ +R G + +
Sbjct: 33 LTGPSGAGKSTLLKLIYGEERPTRGKILVNGH---DLSRLKGREIPFLRRQIGVVFQD-- 87
Query: 77 PSYLLEYYNCSTLEDVFLYL----CEQDQI---------LFSLVGSESAF-----GGQQR 118
+ L + + E+V L L +I L L A GG+Q+
Sbjct: 88 --FRL-LPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQ 144
Query: 119 RVSFAVSLIHDPKILILDEPTVGLDPVLSF 148
RV+ A ++++ P +L+ DEPT LDP LS+
Sbjct: 145 RVAIARAIVNQPAVLLADEPTGNLDPDLSW 174
>gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism].
Length = 237
Score = 57.9 bits (141), Expect = 7e-11
Identities = 41/146 (28%), Positives = 62/146 (42%), Gaps = 28/146 (19%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSISL----------SARTVRDIGYMPQV----GLM 66
LLG +G GKTTLL I+ +R G I R I Y+P+ +
Sbjct: 34 LLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFPRL 93
Query: 67 ------RSGALLAEDSPSYLLEYYNCSTLEDVFLYLCEQDQILFSLVGSESAFGGQQRRV 120
GA D + LE+V+ + G+ S GG+Q+ +
Sbjct: 94 TVEENLLLGAYARRD------KEAQERDLEEVYELFPRLKERRNQRAGTLS--GGEQQML 145
Query: 121 SFAVSLIHDPKILILDEPTVGLDPVL 146
+ A +L+ PK+L+LDEP+ GL P +
Sbjct: 146 AIARALMSRPKLLLLDEPSEGLAPKI 171
>gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase
component/photorepair protein PhrA [Inorganic ion
transport and metabolism].
Length = 257
Score = 57.7 bits (140), Expect = 8e-11
Identities = 42/156 (26%), Positives = 58/156 (37%), Gaps = 45/156 (28%)
Query: 21 LLGPSGCGKTTLLSCIV-------NRLRL---DHGSISLSARTVRDIGYMPQVGLMRSGA 70
++GP+G GKTTLLS + + L G + IG +
Sbjct: 62 IVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIGL--------VSS 113
Query: 71 LLAEDSPSYLLE--------------YYNCSTLEDVFLYLCEQDQILFSLVGSESAFG-- 114
L E Y T ED+ Q L L+G++
Sbjct: 114 ELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDL-----AAAQWLLELLGAKHLADRP 168
Query: 115 ------GQQRRVSFAVSLIHDPKILILDEPTVGLDP 144
G+QRRV A +L+ DP++LILDEP GLD
Sbjct: 169 FGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDL 204
>gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP)
Family protein. [Transport and binding proteins,
Other].
Length = 617
Score = 58.1 bits (141), Expect = 9e-11
Identities = 39/151 (25%), Positives = 63/151 (41%), Gaps = 27/151 (17%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLD---HGSISLSARTV-----RDI-GYMPQVGLMRSGAL 71
++G SG GKTTL++ + R GS+ L+ + R I Y+ Q L L
Sbjct: 56 VMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLF-IPTL 114
Query: 72 LAEDSPSY-----LLEYYNCST--------LEDVFLYLCEQDQILFSLVGSESAFGGQQR 118
+ + + L+ + L C + + + GG+++
Sbjct: 115 TVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKC-ANTRIGVPGRVKGLSGGERK 173
Query: 119 RVSFAVSLIHDPKILILDEPTVGLDPVLSFS 149
R++FA L+ DP +L DEPT GLD SF
Sbjct: 174 RLAFASELLTDPPLLFCDEPTSGLD---SFM 201
>gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 285
Score = 57.5 bits (139), Expect = 1e-10
Identities = 48/158 (30%), Positives = 74/158 (46%), Gaps = 38/158 (24%)
Query: 16 VTAYGLLGPSGCGKTTLLSCIVNRL--RLD----HGSISLSARTVRDIGYMPQVGLMRS- 68
VTA ++GPSGCGK+T L CI NR+ +D G ++ + V D P V L R
Sbjct: 67 VTA--MIGPSGCGKSTFLRCI-NRMNDLIDAARVEGELTFRGKNVYDADVDP-VALRRRI 122
Query: 69 GALLAEDSPSYLLEYYNCSTLEDVFLYLCEQD-------QILFSLVGS-----------E 110
G + + +P + S ++V L Q ++ SL +
Sbjct: 123 GMVFQKPNP------FPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDS 176
Query: 111 SAF---GGQQRRVSFAVSLIHDPKILILDEPTVGLDPV 145
S GGQQ+R+ A ++ DP+++++DEP LDPV
Sbjct: 177 SGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPV 214
>gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 57.3 bits (138), Expect = 1e-10
Identities = 45/156 (28%), Positives = 75/156 (48%), Gaps = 34/156 (21%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV---RDIGYMPQVGLMR----SGALL 72
L+GPSGCGK+T L C+ NR+ D +I ++ ++I Y ++ L+ G +
Sbjct: 34 ALIGPSGCGKSTFLRCL-NRMNDDIENIKITGEIKFEGQNI-YGSKMDLVELRKEVGMVF 91
Query: 73 AEDSPSYLLEYYNCS--------------------TLEDVFLYLCEQDQILFSLVGSESA 112
+ +P Y N + +L+ ++ +D +L + A
Sbjct: 92 QQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKD----NLDRNAQA 147
Query: 113 F-GGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLS 147
F GGQQ+R+ A +L PK+++LDEPT LDP+ S
Sbjct: 148 FSGGQQQRICIARALAVRPKVVLLDEPTSALDPISS 183
>gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 325
Score = 57.4 bits (139), Expect = 1e-10
Identities = 43/137 (31%), Positives = 59/137 (43%), Gaps = 15/137 (10%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISLSAR--------TVRDIGYMPQVGLMRSGAL 71
G LG +G GK+T L + L G + ++ + +R IG + L L
Sbjct: 54 GFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDL 113
Query: 72 LAEDSPSYLLEYYNCSTLE-----DVFLYLCEQDQILFSLVGSESAFGGQQRRVSFAVSL 126
A DS L Y E D + + + L V S GQ+ R A +L
Sbjct: 114 PALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSL--GQRMRAELAAAL 171
Query: 127 IHDPKILILDEPTVGLD 143
+H PK+L LDEPTVGLD
Sbjct: 172 LHPPKVLFLDEPTVGLD 188
>gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit,
PQQ-dependent alcohol dehydrogenase system. Members of
this protein family are the ATP-binding subunit of an
ABC transporter system that is associated with PQQ
biosynthesis and PQQ-dependent alcohol dehydrogenases.
While this family shows homology to several efflux ABC
transporter subunits, the presence of a periplasmic
substrate-binding protein and association with systems
for catabolism of alcohols suggests a role in import
rather than detoxification [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 236
Score = 56.5 bits (137), Expect = 2e-10
Identities = 20/31 (64%), Positives = 25/31 (80%)
Query: 114 GGQQRRVSFAVSLIHDPKILILDEPTVGLDP 144
GG +RRV A +L+H P +L+LDEPTVGLDP
Sbjct: 135 GGHRRRVEIARALLHRPALLLLDEPTVGLDP 165
Score = 31.9 bits (73), Expect = 0.073
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVR 55
LLGP+G GK+TL S + G IS++ +R
Sbjct: 32 LLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLR 66
>gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding
subunit. This model describes spermidine/putrescine ABC
transporter, ATP binding subunit in bacteria and its
equivalents in archaea. This transport system belong to
the larger ATP-Binding Cassette (ABC) transporter
superfamily. The characteristic feature of these
transporter is the obligatory coupling of ATP hydrolysis
to substrate translocation. The minimal configuration of
bacterial ABC transport system: an ATPase or ATP binding
subunit; An integral membrane protein; a hydrophilic
polypetpide, which likely functions as substrate binding
protein. Polyamines like spermidine and putrescine play
vital role in cell proliferation, differentiation, and
ion homeostasis. The concentration of polyamines within
the cell are regulated by biosynthesis, degradation and
transport (uptake and efflux included) [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 325
Score = 57.1 bits (138), Expect = 2e-10
Identities = 49/142 (34%), Positives = 64/142 (45%), Gaps = 29/142 (20%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV-------RDIGYMPQVGLMRSGALL- 72
LLGPSGCGKTTLL + + D GSI L V R I + Q S AL
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQ-----SYALFP 55
Query: 73 ---AEDSPSYLLEYYNCSTLEDVFLYLCEQDQILFSLVGSES--------AFGGQQRRVS 121
E++ ++ L+ E + + LV E GGQQ+RV+
Sbjct: 56 HMTVEENVAFGLKMRKVPRAE-----IKPRVLEALRLVQLEEFADRKPHQLSGGQQQRVA 110
Query: 122 FAVSLIHDPKILILDEPTVGLD 143
A +L+ PKIL+LDEP LD
Sbjct: 111 LARALVFKPKILLLDEPLSALD 132
>gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit;
Provisional.
Length = 255
Score = 56.6 bits (137), Expect = 2e-10
Identities = 44/151 (29%), Positives = 66/151 (43%), Gaps = 33/151 (21%)
Query: 16 VTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSI--------SLSARTV-RDIGYMPQVGLM 66
+TA L+GP+GCGK+TLL C L G++ LS+R + R + +PQ L
Sbjct: 30 ITA--LIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLALLPQHHLT 87
Query: 67 RSGALLAEDSPSYLLEYYNCSTLEDVFLYLCEQDQILFS--------------LVGSESA 112
G + E L Y S ++ L +D + + S
Sbjct: 88 PEGITVRE------LVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLS- 140
Query: 113 FGGQQRRVSFAVSLIHDPKILILDEPTVGLD 143
GGQ++R A+ L D +++LDEPT LD
Sbjct: 141 -GGQRQRAFLAMVLAQDTPVVLLDEPTTYLD 170
>gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system,
permease and ATPase components [General function
prediction only].
Length = 604
Score = 56.9 bits (138), Expect = 3e-10
Identities = 40/137 (29%), Positives = 60/137 (43%), Gaps = 25/137 (18%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGAL-----LAED 75
+ G SG GKT+LL + L GS +S + ++PQ + G L
Sbjct: 424 ITGESGAGKTSLLRAL-AGL-WPWGSGRISMPADSALLFLPQRPYLPQGTLREALCYPNA 481
Query: 76 SPSYLLEYYNCSTLEDVFL-YLCEQ-------DQILFSLVGSESAFGGQQRRVSFAVSLI 127
+P + + L V L L E+ D++L GG+Q+R++FA L+
Sbjct: 482 APDFSDAELV-AVLHKVGLGDLAERLDEEDRWDRVLS---------GGEQQRLAFARLLL 531
Query: 128 HDPKILILDEPTVGLDP 144
H PK + LDE T LD
Sbjct: 532 HKPKWVFLDEATSALDE 548
>gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 246
Score = 56.2 bits (135), Expect = 3e-10
Identities = 46/153 (30%), Positives = 71/153 (46%), Gaps = 31/153 (20%)
Query: 20 GLLGPSGCGKTTLLSCIVNRL-----RLDHGSISLSARTVRDIGYMPQVGLMRSGALLAE 74
L+G SGCGK+T L C NR+ ++D G + + + V++ V +R +
Sbjct: 32 ALIGASGCGKSTFLRCF-NRMNDKIAKID-GLVEIEGKDVKN----QDVVALRKNVGMVF 85
Query: 75 DSPSYLLE--YYNCSTL------------EDVFLYLCEQDQILFSLVGSE------SAFG 114
P+ ++ Y N S E+ + C Q LF V + + G
Sbjct: 86 QQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSG 145
Query: 115 GQQRRVSFAVSLIHDPKILILDEPTVGLDPVLS 147
GQQ+R+ A +L PK+L+LDEPT LDP+ S
Sbjct: 146 GQQQRLCIARALAIKPKLLLLDEPTSALDPISS 178
>gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism].
Length = 250
Score = 56.0 bits (136), Expect = 3e-10
Identities = 47/171 (27%), Positives = 68/171 (39%), Gaps = 37/171 (21%)
Query: 9 LNTVIFGVTA---YGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMP---- 61
+N V V GL+GP+G GKTTL + I + G++ R DI +P
Sbjct: 20 VNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGR---DITGLPPHRI 76
Query: 62 -QVGLMRS-----------------GALLAEDSPSYLLEYYNCSTLEDVF----LYLCEQ 99
++G+ R+ A S LL E L E
Sbjct: 77 ARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEF 136
Query: 100 ---DQILFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLS 147
++ G+ S GQQRR+ A +L PK+L+LDEP GL+P +
Sbjct: 137 VGLGELADRPAGNLS--YGQQRRLEIARALATQPKLLLLDEPAAGLNPEET 185
>gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL.
Members of this family are the PhnL protein of C-P
lyase systems for utilization of phosphonates. These
systems resemble phosphonatase-based systems in having a
three component ABC transporter, where TIGR01097 is the
permease, TIGR01098 is the phosphonates binding protein,
and TIGR02315 is the ATP-binding cassette (ABC) protein.
They differ, however, in having, typically, ten or more
additional genes, many of which are believed to form a
membrane-associated C-P lysase complex. This protein
(PhnL) and the adjacent-encoded PhnK (TIGR02323)
resemble transporter ATP-binding proteins but are
suggested, based on mutatgenesis studies, to be part of
this C-P lyase complex rather than part of a transporter
per se.
Length = 224
Score = 55.9 bits (135), Expect = 3e-10
Identities = 50/163 (30%), Positives = 64/163 (39%), Gaps = 27/163 (16%)
Query: 7 SSLNTVIFGVTA---YGLLGPSGCGKTTLLSCIVNRLRLDHGSI------------SLSA 51
L V V A L GPSG GK+TLL + D G I S
Sbjct: 22 PVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP 81
Query: 52 RTV-----RDIGYMPQV--GLMRSGAL--LAEDSPSYLLEYYNCSTLEDVFLYLCEQDQI 102
R V + IGY+ Q + R AL +AE + L +
Sbjct: 82 REVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPER 141
Query: 103 LFSLVGSESAF-GGQQRRVSFAVSLIHDPKILILDEPTVGLDP 144
L+ L + F GG+Q+RV+ A I D IL+LDEPT LD
Sbjct: 142 LWHL--PPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDA 182
>gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase
component [Amino acid transport and metabolism].
Length = 268
Score = 56.1 bits (136), Expect = 3e-10
Identities = 35/129 (27%), Positives = 53/129 (41%), Gaps = 35/129 (27%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAEDSPSY 79
GL+G SGCGK+TL I+ G I + + L E+
Sbjct: 43 GLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITK--------------LSKEERRER 88
Query: 80 LLEYYNCSTLEDVFLYLCEQDQIL-----FSLVGSESAFGGQQRRVSFAVSLIHDPKILI 134
+LE LE V L ++ + S GGQ++R+ A +L +PK+++
Sbjct: 89 VLEL-----LEKVGLP---EEFLYRYPHELS--------GGQRQRIGIARALALNPKLIV 132
Query: 135 LDEPTVGLD 143
DEP LD
Sbjct: 133 ADEPVSALD 141
>gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding
protein. This model represents the ATP-binding cassette
(ABC) protein of the three subunit molybdate ABC
transporter. The three proteins of this complex are
homologous to proteins of the sulfate ABC transporter.
Molybdenum may be used in nitrogenases of
nitrogen-fixing bacteria and in molybdopterin cofactors.
In some cases, molybdate may be transported by a sulfate
transporter rather than by a specific molybdate
transporter [Transport and binding proteins, Anions].
Length = 354
Score = 56.3 bits (136), Expect = 4e-10
Identities = 46/157 (29%), Positives = 65/157 (41%), Gaps = 45/157 (28%)
Query: 15 GVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV-------------RDIGYMP 61
GVTA + G SG GKTTL+ I R D G I L+ RT+ R IGY+
Sbjct: 24 GVTA--IFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVF 81
Query: 62 Q---------------VGLMRSGALLAEDSPSYLLEYYNCSTLEDVFLYLCEQDQILFSL 106
Q G+ R+ S ++E L L L
Sbjct: 82 QEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHL-------------LGRL 128
Query: 107 VGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLD 143
G S GG+++RV+ +L+ P++L++DEP LD
Sbjct: 129 PGRLS--GGEKQRVAIGRALLSSPRLLLMDEPLAALD 163
>gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of
the sulfate transporter. Part of the ABC transporter
complex cysAWTP involved in sulfate import. Responsible
for energy coupling to the transport system. The complex
is composed of two ATP-binding proteins (cysA), two
transmembrane proteins (cysT and cysW), and a
solute-binding protein (cysP). ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 239
Score = 55.8 bits (135), Expect = 4e-10
Identities = 43/152 (28%), Positives = 57/152 (37%), Gaps = 43/152 (28%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV-------RDIGYMPQ---------- 62
LLGPSG GKTTLL I R D G+I R++G++ Q
Sbjct: 32 ALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTV 91
Query: 63 -----VGL------MRSGALLAEDSPSYLLEYYNCSTLEDVFLYLCEQDQILFSLVGSES 111
GL R LL+ L D +
Sbjct: 92 FDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRY---------------PAQ 136
Query: 112 AFGGQQRRVSFAVSLIHDPKILILDEPTVGLD 143
GGQ++RV+ A +L +PK+L+LDEP LD
Sbjct: 137 LSGGQRQRVALARALAVEPKVLLLDEPFGALD 168
>gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 316
Score = 56.0 bits (136), Expect = 4e-10
Identities = 42/162 (25%), Positives = 63/162 (38%), Gaps = 43/162 (26%)
Query: 19 YGLLGPSGCGKTTLLSCIVNRLRLDHGSI-------------SLSARTVR-----DIGYM 60
G++G SG GK+ L I+ L + I SLS + +R +I +
Sbjct: 34 LGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMI 93
Query: 61 PQVGL------MRSGALLAEDSPSYLLEYYNCSTLEDVFLYLCEQDQILFSLVGSESAF- 113
Q + M G +AE L + + ++ E L LVG
Sbjct: 94 FQDPMTSLNPVMTIGDQIAE----VLRLHGKGLSKKEAKERAIE----LLELVGIPDPER 145
Query: 114 ----------GGQQRRVSFAVSLIHDPKILILDEPTVGLDPV 145
GG ++RV A++L +PK+LI DEPT LD
Sbjct: 146 RLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVT 187
>gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of
bacteriocin exporters, subfamily C. Many
non-lantibiotic bacteriocins of lactic acid bacteria are
produced as precursors which have N-terminal leader
peptides that share similarities in amino acid sequence
and contain a conserved processing site of two glycine
residues in positions -1 and -2. A dedicated ATP-binding
cassette (ABC) transporter is responsible for the
proteolytic cleavage of the leader peptides and
subsequent translocation of the bacteriocins across the
cytoplasmic membrane.
Length = 220
Score = 55.3 bits (134), Expect = 4e-10
Identities = 44/145 (30%), Positives = 67/145 (46%), Gaps = 27/145 (18%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISL---SARTV------RDIGYMPQ-----VGL 65
++G G GK+TLL + + GS+ L R + R+IGY+PQ G
Sbjct: 34 AIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGT 93
Query: 66 MRS----GALLAEDSPSYLLEYYNCSTLEDVFLYLCEQDQILFSLVGSESAF---GGQQR 118
+R GA LA+D +L + + D + L E GGQ++
Sbjct: 94 LRDNITLGAPLADDER--ILRAAELAGVTD----FVNKHPNGLDLQIGERGRGLSGGQRQ 147
Query: 119 RVSFAVSLIHDPKILILDEPTVGLD 143
V+ A +L++DP IL+LDEPT +D
Sbjct: 148 AVALARALLNDPPILLLDEPTSAMD 172
>gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional.
Length = 659
Score = 56.0 bits (135), Expect = 6e-10
Identities = 47/163 (28%), Positives = 78/163 (47%), Gaps = 36/163 (22%)
Query: 11 TVIFGVTAY-------GLLGPSGCGKTTLLSCIVNRLRLDH--GSI-----SLSARTVRD 56
T++ GVT +LGPSG GK+TLL+ + R++ ++ G+I + + ++
Sbjct: 82 TILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKR 141
Query: 57 IGYMPQ----------------VGLMRSGALLAEDSPSYLLEYYNCSTLEDVFLYLCEQD 100
G++ Q L+R L + + E S + ++ L CE
Sbjct: 142 TGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAE----SVISELGLTKCENT 197
Query: 101 QILFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLD 143
I S + S GG+++RVS A ++ +P +LILDEPT GLD
Sbjct: 198 IIGNSFIRGIS--GGERKRVSIAHEMLINPSLLILDEPTSGLD 238
>gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein;
Provisional.
Length = 530
Score = 55.7 bits (135), Expect = 6e-10
Identities = 33/140 (23%), Positives = 56/140 (40%), Gaps = 38/140 (27%)
Query: 22 LGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAEDSPSYLL 81
+G +G GKTTLL +V L D G++ S +IGY Q D
Sbjct: 351 IGENGVGKTTLLRTLVGELEPDSGTVKWSENA--NIGYYAQ----DHAYDFEND------ 398
Query: 82 EYYNCSTLEDVFLYLCE------QDQILFSLVG----SESAF--------GGQQRRVSFA 123
+F ++ + +Q + +G S+ GG++ R+ F
Sbjct: 399 --------LTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFG 450
Query: 124 VSLIHDPKILILDEPTVGLD 143
++ P +L++DEPT +D
Sbjct: 451 KLMMQKPNVLVMDEPTNHMD 470
Score = 36.0 bits (84), Expect = 0.003
Identities = 44/163 (26%), Positives = 65/163 (39%), Gaps = 43/163 (26%)
Query: 19 YGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQ------------VGLM 66
YGL+G +GCGK+T + + L G++SL R +G + Q +M
Sbjct: 30 YGLIGANGCGKSTFMKILGGDLEPSAGNVSLDP-NER-LGKLRQDQFAFEEFTVLDTVIM 87
Query: 67 RSGALLA---EDSPSYLL------EYYNCSTLEDVFLYLCEQD---------QILFSL-V 107
L E Y L + + LE F E D ++L + +
Sbjct: 88 GHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKF---AEMDGYTAEARAGELLLGVGI 144
Query: 108 GSESAFG-------GQQRRVSFAVSLIHDPKILILDEPTVGLD 143
E +G G + RV A +L +P IL+LDEPT LD
Sbjct: 145 PEEQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLD 187
>gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit.
This model describes the ATP binding subunit of the
multisubunit cobalt transporter in bacteria and its
equivalents in archaea. The model is restricted to ATP
subunit that is a part of the cobalt transporter, which
belongs to the ABC transporter superfamily (ATP Binding
Cassette). The model excludes ATP binding subunit that
are associated with other transporters belonging to ABC
transporter superfamily. This superfamily includes two
groups, one which catalyze the uptake of small
molecules, including ions from the external milieu and
the other group which is engaged in the efflux of small
molecular weight compounds and ions from within the
cell. Energy derived from the hydrolysis of ATP drive
the both the process of uptake and efflux [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 190
Score = 54.4 bits (131), Expect = 6e-10
Identities = 43/167 (25%), Positives = 60/167 (35%), Gaps = 64/167 (38%)
Query: 17 TAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVG-LMRSGALLAED 75
LLG +G GK+TLL + LR PQ G ++ G L
Sbjct: 19 EVLALLGANGAGKSTLLLHLNGLLR-------------------PQSGAVLIDGEPLDYS 59
Query: 76 SPSYLLEYYNCSTLEDVFLYLCEQDQILFSL-VGSESAFG-------------------- 114
LLE + V L + D LF+ V + AFG
Sbjct: 60 RKG-LLERR-----QRVGLVFQDPDDQLFAADVDQDVAFGPLNLGLSEAEVERRVREALT 113
Query: 115 -----------------GQQRRVSFAVSLIHDPKILILDEPTVGLDP 144
G+++RV+ A ++ P +L+LDEPT GLDP
Sbjct: 114 AVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDP 160
>gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of
peroxisomal transporter, subfamily D. Peroxisomal
ATP-binding cassette transporter (Pat) is involved in
the import of very long-chain fatty acids (VLCFA) into
the peroxisome. The peroxisomal membrane forms a
permeability barrier for a wide variety of metabolites
required for and formed during fatty acid
beta-oxidation. To communicate with the cytoplasm and
mitochondria, peroxisomes need dedicated proteins to
transport such hydrophilic molecules across their
membranes. X-linked adrenoleukodystrophy (X-ALD) is
caused by mutations in the ALD gene, which encodes ALDP
(adrenoleukodystrophy protein ), a peroxisomal integral
membrane protein that is a member of the ATP-binding
cassette (ABC) transporter protein family. The disease
is characterized by a striking and unpredictable
variation in phenotypic expression. Phenotypes include
the rapidly progressive childhood cerebral form (CCALD),
the milder adult form, adrenomyeloneuropathy (AMN), and
variants without neurologic involvement (i.e.
asymptomatic).
Length = 166
Score = 54.1 bits (131), Expect = 7e-10
Identities = 36/125 (28%), Positives = 54/125 (43%), Gaps = 33/125 (26%)
Query: 21 LLGPSGCGKTTLLSCIVNRL-RLDHGSISLSARTVRDIGYMPQVGLMRSGALLAEDSPSY 79
+ GPSG GK++L + L G I + D+ ++PQ + G
Sbjct: 32 ITGPSGTGKSSLFR-ALAGLWPWGSGRIGMPEG--EDLLFLPQRPYLPLG---------- 78
Query: 80 LLEYYNCSTLEDVFLYLCEQDQILFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPT 139
TL + +Y D +L S GG+Q+R++FA L+H PK + LDE T
Sbjct: 79 --------TLREQLIYP--WDDVL-------S--GGEQQRLAFARLLLHKPKFVFLDEAT 119
Query: 140 VGLDP 144
LD
Sbjct: 120 SALDE 124
>gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin
B, subfamily C. The ABC-transporter hemolysin B is a
central component of the secretion machinery that
translocates the toxin, hemolysin A, in a
Sec-independent fashion across both membranes of E.
coli. The hemolysin A (HlyA) transport machinery is
composed of the ATP-binding cassette (ABC) transporter
HlyB located in the inner membrane, hemolysin D (HlyD),
also anchored in the inner membrane, and TolC, which
resides in the outer membrane. HlyD apparently forms a
continuous channel that bridges the entire periplasm,
interacting with TolC and HlyB. This arrangement
prevents the appearance of periplasmic intermediates of
HlyA during substrate transport. Little is known about
the molecular details of HlyA transport, but it is
evident that ATP-hydrolysis by the ABC-transporter HlyB
is a necessary source of energy.
Length = 237
Score = 54.4 bits (131), Expect = 1e-09
Identities = 40/140 (28%), Positives = 71/140 (50%), Gaps = 17/140 (12%)
Query: 20 GLLGPSGCGKTTLLSCIV-------NRLRLDHGSISLSARTV--RDIGYMPQVGLMRSGA 70
G++G SG GK+TL I R+ +D ++L+ R +G + Q ++ + +
Sbjct: 32 GIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGVVLQENVLFNRS 91
Query: 71 L-----LAEDSPSYLLEYYNCSTLEDVFLYLCEQDQILFSLVGSESA--FGGQQRRVSFA 123
+ LA+ S + + L ++ E + ++VG + A GGQ++R++ A
Sbjct: 92 IRDNIALADPGMS-MERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIA 150
Query: 124 VSLIHDPKILILDEPTVGLD 143
+LIH+P+ILI DE T LD
Sbjct: 151 RALIHNPRILIFDEATSALD 170
>gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding
protein UrtE. Members of this protein family are ABC
transporter ATP-binding subunits associated with urea
transport and metabolism. This protein is found in a
conserved five-gene transport operon typically found
adjacent to urease genes. It was shown in Cyanobacteria
that disruption leads to the loss of high-affinity urea
transport activity [Transport and binding proteins,
Amino acids, peptides and amines].
Length = 230
Score = 54.1 bits (131), Expect = 1e-09
Identities = 46/155 (29%), Positives = 65/155 (41%), Gaps = 42/155 (27%)
Query: 15 GVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISL----------SARTVRDIGYMPQ-- 62
VT +LG +G GKTTLL ++ L + GSI L R I Y+PQ
Sbjct: 27 EVTC--VLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAYVPQGR 84
Query: 63 -------------VGLMRSGALLAEDSPSYLLEYYNCSTLEDVFLYLCEQDQILFSLVGS 109
GL + P + E F L ++L G
Sbjct: 85 EIFPRLTVEENLLTGLAALPRRSRK-IPDEIYEL---------FPVL---KEMLGRRGGD 131
Query: 110 ESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDP 144
S GGQQ++++ A +L+ PK+L+LDEPT G+ P
Sbjct: 132 LS--GGQQQQLAIARALVTRPKLLLLDEPTEGIQP 164
>gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein.
[Transport and binding proteins, Anions].
Length = 237
Score = 54.0 bits (130), Expect = 1e-09
Identities = 44/140 (31%), Positives = 66/140 (47%), Gaps = 23/140 (16%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV-------RDIGYMPQ-VGLMRSGAL 71
LLGPSG GK+TLL I + D G I L+ + R IG++ Q L + L
Sbjct: 30 ALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVFQHYALFKH--L 87
Query: 72 LAEDSPSYLLEYYNCSTLEDVFLYLCEQDQILFSLVGSE--------SAFGGQQRRVSFA 123
D+ ++ LE + + + + L LV E GGQ++RV+ A
Sbjct: 88 TVRDNIAFGLEIRKHPKAK-----IKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALA 142
Query: 124 VSLIHDPKILILDEPTVGLD 143
+L +P++L+LDEP LD
Sbjct: 143 RALAVEPQVLLLDEPFGALD 162
>gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 54.2 bits (130), Expect = 2e-09
Identities = 47/162 (29%), Positives = 76/162 (46%), Gaps = 44/162 (27%)
Query: 16 VTAYGLLGPSGCGKTTLLSCIVNRLRLDH-------GSISLSARTVRDIGYMPQVGLM-- 66
+TA ++GPSGCGKTTLL I NR+ DH G I + + Y PQ+ +
Sbjct: 31 ITA--IIGPSGCGKTTLLRSI-NRMN-DHIPGFRVEGKIYFKGQDI----YDPQLDVTEY 82
Query: 67 --RSGALLAEDSPSYLLEYYNCS--------------------TLEDVFLYLCEQDQILF 104
+ G + + +P + Y N + +L+ L+ D++
Sbjct: 83 RKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALW----DEVKS 138
Query: 105 SLVGSESAF-GGQQRRVSFAVSLIHDPKILILDEPTVGLDPV 145
L + GGQQ+R+ A +L +P++++LDEPT LDP+
Sbjct: 139 ELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPI 180
>gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial
lipid flippase and related proteins, subfamily C. MsbA
is an essential ABC transporter, closely related to
eukaryotic MDR proteins. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 234
Score = 53.8 bits (130), Expect = 2e-09
Identities = 44/139 (31%), Positives = 69/139 (49%), Gaps = 15/139 (10%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMP---QVGLMRSGALLAEDS 76
L+GPSG GK+TL++ I +D G I + VRD Q+GL+ L D+
Sbjct: 32 ALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFNDT 91
Query: 77 PSYLLEYYNC-STLEDVFL---------YLCEQDQILFSLVGSE--SAFGGQQRRVSFAV 124
+ + Y +T E+V ++ E + +++G GGQ++R++ A
Sbjct: 92 VAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIAR 151
Query: 125 SLIHDPKILILDEPTVGLD 143
+L+ DP ILILDE T LD
Sbjct: 152 ALLKDPPILILDEATSALD 170
>gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein;
Provisional.
Length = 272
Score = 53.9 bits (130), Expect = 2e-09
Identities = 53/164 (32%), Positives = 79/164 (48%), Gaps = 48/164 (29%)
Query: 16 VTAYGLLGPSGCGKTTLLSCIVNRL-------RLDHGSISLSARTVRDIGYMPQVGLM-- 66
VTA +GPSGCGK+TLL C NR+ R++ G I L + + Y +V +
Sbjct: 53 VTA--FIGPSGCGKSTLLRCF-NRMNDLVDNCRIE-GEIRLDGQNI----YDKKVDVAEL 104
Query: 67 --RSGALLAEDSPSYLLEYYNCSTLEDVFLYLCEQ--------DQIL-FSLVGS------ 109
R G + +P + S E+V L Q D+ + SL G+
Sbjct: 105 RRRVGMVFQRPNP------FPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEV 158
Query: 110 -----ESAF---GGQQRRVSFAVSLIHDPKILILDEPTVGLDPV 145
E+AF GGQQ+R+ A ++ +P++L+LDEPT LDP+
Sbjct: 159 KDRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPI 202
>gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 287
Score = 53.9 bits (130), Expect = 2e-09
Identities = 21/31 (67%), Positives = 25/31 (80%)
Query: 114 GGQQRRVSFAVSLIHDPKILILDEPTVGLDP 144
GGQ+RRV+ A + +PKILILDEPT GLDP
Sbjct: 147 GGQKRRVAIAGVVAMEPKILILDEPTAGLDP 177
>gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding
protein YecC; Provisional.
Length = 250
Score = 53.6 bits (129), Expect = 2e-09
Identities = 45/153 (29%), Positives = 71/153 (46%), Gaps = 34/153 (22%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRL-DHGSISLSARTV---RDIGYMPQVGLMRSGALLAEDS 76
++GPSG GKTTLL CI N L + G+I + T+ R + Q GL+R
Sbjct: 34 IIGPSGSGKTTLLRCI-NLLEQPEAGTIRVGDITIDTARSLS--QQKGLIRQ----LRQH 86
Query: 77 PSYLLEYYNC----STLEDVF--------------LYLCEQDQILFSLVGSESAF----- 113
++ + +N + LE++ + L G E+++
Sbjct: 87 VGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLS 146
Query: 114 GGQQRRVSFAVSLIHDPKILILDEPTVGLDPVL 146
GGQQ+RV+ A +L P++++ DEPT LDP L
Sbjct: 147 GGQQQRVAIARALAMRPEVILFDEPTSALDPEL 179
>gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein;
Provisional.
Length = 253
Score = 53.6 bits (129), Expect = 2e-09
Identities = 50/164 (30%), Positives = 76/164 (46%), Gaps = 48/164 (29%)
Query: 16 VTAYGLLGPSGCGKTTLLSCIVNRL-------RLDHGSISLSARTVRDIGYMPQVGLM-- 66
VTA L+GPSGCGK+T L C+ NR+ R++ G I L + Y P V ++
Sbjct: 34 VTA--LIGPSGCGKSTFLRCL-NRMNDLIPGARVE-GEILLDGENI----YDPHVDVVEL 85
Query: 67 --RSGALLAEDSPSYLLEYYNCSTLEDVFLYL---------CEQDQILFSLVG------- 108
R G + + +P + S E+V L +++ SL
Sbjct: 86 RRRVGMVFQKPNP------FPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEV 139
Query: 109 ----SESAFG---GQQRRVSFAVSLIHDPKILILDEPTVGLDPV 145
ESA G GQQ+R+ A +L +P++L++DEP LDP+
Sbjct: 140 KDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPI 183
>gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter. ABC transporters for a large
family of proteins responsible for translocation of a
variety of compounds across biological membranes. ABC
transporters are the largest family of proteins in many
completely sequenced bacteria. ABC transporters are
composed of two copies of this domain and two copies of
a transmembrane domain pfam00664. These four domains may
belong to a single polypeptide as in human CFTR, or
belong in different polypeptide chains.
Length = 119
Score = 51.6 bits (124), Expect = 3e-09
Identities = 30/124 (24%), Positives = 53/124 (42%), Gaps = 20/124 (16%)
Query: 30 TTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAEDSPSYLLEYYNCSTL 89
+TLL I L+ G+I L + L + ++ +D + +
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKL--LRKRIGVVFQDPQLF----PELTVR 54
Query: 90 EDVFLYLCEQDQI-----------LFSLVGSESAF---GGQQRRVSFAVSLIHDPKILIL 135
E++F L +++ L + E GGQ++RV+ A +L+ PK+L+L
Sbjct: 55 ENLFFGLRDKEADARAEEALERVGLPDFLDREPVGTLSGGQKQRVAIARALLKKPKLLLL 114
Query: 136 DEPT 139
DEPT
Sbjct: 115 DEPT 118
>gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit;
Provisional.
Length = 305
Score = 53.9 bits (130), Expect = 3e-09
Identities = 18/32 (56%), Positives = 22/32 (68%)
Query: 114 GGQQRRVSFAVSLIHDPKILILDEPTVGLDPV 145
GGQ+RRV+ A L +P L+ DEPT GLDP
Sbjct: 168 GGQKRRVALAGILAMEPDFLVFDEPTAGLDPQ 199
>gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 259
Score = 53.2 bits (128), Expect = 4e-09
Identities = 44/132 (33%), Positives = 67/132 (50%), Gaps = 12/132 (9%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALL----AEDS 76
+LGPSGCGKTTLL+ I + GSI L+ R + G V + ++ ALL D+
Sbjct: 36 VLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGV-VFQNEALLPWLNVIDN 94
Query: 77 PSYLLEYYNCSTLEDVFLYLCEQDQILFSLVGSESAF-----GGQQRRVSFAVSLIHDPK 131
++ L+ + + Q L L G+E + GG ++RV A +L +P+
Sbjct: 95 VAFGLQLRGIEKAQR--REIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQ 152
Query: 132 ILILDEPTVGLD 143
+L+LDEP LD
Sbjct: 153 LLLLDEPFGALD 164
>gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of
multidrug resistance-associated protein, subfamily C.
This subfamily is also known as MRP (multidrug
resistance-associated protein). Some of the MRP members
have five additional transmembrane segments in their
N-terminus, but the function of these additional
membrane-spanning domains is not clear. The MRP was
found in the multidrug-resisting lung cancer cell in
which p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions, such as
glutathione, glucuronate, and sulfate.
Length = 204
Score = 52.5 bits (127), Expect = 4e-09
Identities = 37/135 (27%), Positives = 65/135 (48%), Gaps = 23/135 (17%)
Query: 22 LGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAE---DSPS 78
+GP G GK++LLS ++ L GS+S+ I Y+ Q +++G + P
Sbjct: 37 VGPVGSGKSSLLSALLGELEKLSGSVSVPGS----IAYVSQEPWIQNGTIRENILFGKP- 91
Query: 79 YLLEYYN-----CSTLEDVFLYLCEQDQILFSLVG----SESAFGGQQRRVSFAVSLIHD 129
+ E Y C+ D+ + L + D + +G + S GGQ++R+S A ++ D
Sbjct: 92 FDEERYEKVIKACALEPDLEI-LPDGDL---TEIGEKGINLS--GGQKQRISLARAVYSD 145
Query: 130 PKILILDEPTVGLDP 144
I +LD+P +D
Sbjct: 146 ADIYLLDDPLSAVDA 160
>gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 53.1 bits (127), Expect = 4e-09
Identities = 46/161 (28%), Positives = 72/161 (44%), Gaps = 42/161 (26%)
Query: 17 TAYGLLGPSGCGKTTLLSCIVNRL-------RLDHGSISLSARTVRDIGYMPQVGLMRS- 68
+ +GPSGCGK+T L + NR+ RL+ G I + R + D G QV +R
Sbjct: 30 SVVAFIGPSGCGKSTFLR-LFNRMNDLIPATRLE-GEIRIDGRNIYDKGV--QVDELRKN 85
Query: 69 -GALLAEDSPSYLLEYYNCS--------------------TLEDVFLYLCEQDQILFSLV 107
G + +P + N + TL+ L+ +D++
Sbjct: 86 VGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKL----- 140
Query: 108 GSESAF---GGQQRRVSFAVSLIHDPKILILDEPTVGLDPV 145
ESAF GGQQ+R+ A ++ P +L++DEP LDP+
Sbjct: 141 -KESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPI 180
>gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein;
Provisional.
Length = 252
Score = 52.9 bits (127), Expect = 5e-09
Identities = 54/164 (32%), Positives = 75/164 (45%), Gaps = 46/164 (28%)
Query: 15 GVTAYGLLGPSGCGKTTLLSCIVNRLR------LDHGSISLSARTVRDIGYMPQ---VGL 65
+TA L+GPSG GK+TLL I NR+ GSI + + Y P+ V L
Sbjct: 32 EITA--LIGPSGSGKSTLLRSI-NRMNDLNPEVTITGSIVYNGHNI----YSPRTDTVDL 84
Query: 66 MRS-GALLAEDSPSYLLEYYNCSTLEDVFLYL----CEQDQIL-----FSLVGS------ 109
+ G + + +P + S E+V L + Q+L SL G+
Sbjct: 85 RKEIGMVFQQPNP------FPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEV 138
Query: 110 -----ESAFG---GQQRRVSFAVSLIHDPKILILDEPTVGLDPV 145
+SA G GQQ+RV A L PKI++LDEPT LDP+
Sbjct: 139 KDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPI 182
>gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 52.7 bits (126), Expect = 6e-09
Identities = 44/153 (28%), Positives = 68/153 (44%), Gaps = 27/153 (17%)
Query: 17 TAYGLLGPSGCGKTTLLSCIVNRL-------RLDHGSISLSARTVRDIGYMPQVGLMRSG 69
T L+GPSGCGKTT L I NR+ R+ G I L + + P R G
Sbjct: 31 TVNALIGPSGCGKTTFLRAI-NRMHDLTPGARVT-GRILLDGQDIYGPRVDPVAMRRRVG 88
Query: 70 ALLAEDSPSYLLEYYNCSTLEDVFLYLCEQDQIL----FSLVGSE--------------S 111
+ + +P + ++ + ++D ++ SL G+
Sbjct: 89 MVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATG 148
Query: 112 AFGGQQRRVSFAVSLIHDPKILILDEPTVGLDP 144
GGQQ+R+ A +L +P+IL++DEPT LDP
Sbjct: 149 LSGGQQQRLCIARALAVEPEILLMDEPTSALDP 181
>gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit;
Provisional.
Length = 351
Score = 52.8 bits (127), Expect = 6e-09
Identities = 50/157 (31%), Positives = 68/157 (43%), Gaps = 33/157 (21%)
Query: 8 SLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV-------RDIGYM 60
+LN I T LLGPSGCGKTT+L + + G I + V RDI +
Sbjct: 24 NLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICMV 83
Query: 61 PQVGLMRSGALLAE----DSPSYLLEYYNCSTLEDVFLYLCEQDQI-----LFSLVGSES 111
Q S AL ++ Y L+ E + ++ L L G E
Sbjct: 84 FQ-----SYALFPHMSLGENVGYGLKMLGVPKEE-------RKQRVKEALELVDLAGFED 131
Query: 112 AF-----GGQQRRVSFAVSLIHDPKILILDEPTVGLD 143
+ GGQQ+RV+ A +LI PK+L+ DEP LD
Sbjct: 132 RYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLD 168
>gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 253
Score = 52.1 bits (125), Expect = 7e-09
Identities = 46/154 (29%), Positives = 70/154 (45%), Gaps = 28/154 (18%)
Query: 16 VTAYGLLGPSGCGKTTLLSCIVNRLR--LDH----GSISLSARTVRDIGYMPQVGLMRSG 69
VTA L+GPSGCGK+TLL C NR+ + G I + + D G + G
Sbjct: 34 VTA--LIGPSGCGKSTLLRCF-NRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKIG 90
Query: 70 ALLAEDSPSYLLEYYNCS------------TLEDVFLYLCEQDQILFSLVGS---ESAF- 113
+ +P Y N + TL D + + L+ V +SA
Sbjct: 91 MVFQRPNPFPKSIYENVAYGPRIHGEKNKKTL-DTIVEKSLKGAALWDEVKDRLHDSALS 149
Query: 114 --GGQQRRVSFAVSLIHDPKILILDEPTVGLDPV 145
GGQQ+R+ A +L +P+++++DEP LDP+
Sbjct: 150 LSGGQQQRLCIARTLAVNPEVILMDEPCSALDPI 183
>gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 352
Score = 52.7 bits (127), Expect = 7e-09
Identities = 45/145 (31%), Positives = 66/145 (45%), Gaps = 25/145 (17%)
Query: 15 GVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV-------------RDIGYMP 61
G+TA L GPSG GKT+L++ I R D G I L+ R + R IGY+
Sbjct: 25 GITA--LFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVF 82
Query: 62 QVGLMRSGALLAEDSPSYLLEYYNCSTLEDVFLYLCEQDQI---LFSLVGSESAFGGQQR 118
Q L + L Y ++ F L I L G+ S GG+++
Sbjct: 83 Q-----DARLFPHYTVRGNLRYGMWKSMRAQFDQLVALLGIEHLLDRYPGTLS--GGEKQ 135
Query: 119 RVSFAVSLIHDPKILILDEPTVGLD 143
RV+ +L+ P++L++DEP LD
Sbjct: 136 RVAIGRALLTAPELLLMDEPLASLD 160
>gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 52.3 bits (125), Expect = 8e-09
Identities = 45/153 (29%), Positives = 69/153 (45%), Gaps = 30/153 (19%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV---RDIGYMPQ---VGLMRS-GALLA 73
L+GPSGCGK+T L + NR+ ++++ ++I Y P V L + G +
Sbjct: 36 LIGPSGCGKSTYLRTL-NRMNDLIPGVTITGNVSLRGQNI-YAPNEDVVQLRKQVGMVFQ 93
Query: 74 EDSPSYLLEYYNCSTLEDVFLYLCEQDQILFSLVGS----------------ESAF---G 114
+ +P Y N + + L + +L V + ESA G
Sbjct: 94 QPNPFPFSIYEN--VIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSG 151
Query: 115 GQQRRVSFAVSLIHDPKILILDEPTVGLDPVLS 147
GQQ+RV A L P +++LDEPT LDP+ S
Sbjct: 152 GQQQRVCIARVLAVKPDVILLDEPTSALDPISS 184
>gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug
resistance-like (PDR) subfamily G of ATP-binding
cassette transporters. The pleiotropic drug resistance
(PDR) is a well-described phenomenon occurring in fungi
and shares several similarities with processes in
bacteria and higher eukaryotes. This PDR subfamily
represents domain I of its (ABC-IM)2 organization. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds
including sugars, ions, peptides, and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 192
Score = 51.5 bits (124), Expect = 9e-09
Identities = 36/130 (27%), Positives = 51/130 (39%), Gaps = 34/130 (26%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDH--GSISLSARTV-----RDIGYMPQVGLMRSGALLA 73
L+G SG GKTTLL + R G I ++ R + R GY+ Q + +
Sbjct: 38 LMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTGYVEQQDVHSPNLTVR 97
Query: 74 EDSPSYLLEYYNCSTLEDVFLYLCEQDQILFSLVGSESAFGGQQRRVSFAVSLIHDPKIL 133
E L + L + + Q++R++ V L P IL
Sbjct: 98 EA-----LRFSAL--LRGLSVE--------------------QRKRLTIGVELAAKPSIL 130
Query: 134 ILDEPTVGLD 143
LDEPT GLD
Sbjct: 131 FLDEPTSGLD 140
>gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 305
Score = 52.1 bits (125), Expect = 1e-08
Identities = 52/174 (29%), Positives = 82/174 (47%), Gaps = 56/174 (32%)
Query: 16 VTAYGLLGPSGCGKTTLLSCIVNRL-------RLDHGSISLSAR---------------- 52
VTA L+GPSGCGK+T L C+ NR+ R+D GS+ L +
Sbjct: 73 VTA--LIGPSGCGKSTFLRCL-NRMNDRIKAARID-GSVELDGQDIYQDGVNLVELRKRV 128
Query: 53 ------------TVRD-IGYMPQV-GLMRSGALLA-------EDSPSYLLEYYNCSTLED 91
++R+ I Y P+ G + +G LLA +D+ L+E +L
Sbjct: 129 GMVFQSPNPFPKSIRENISYGPRKHGDINTG-LLARLLGRDDKDAEDELVE----RSLRQ 183
Query: 92 VFLYLCEQDQILFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPV 145
L+ D++ + +G GGQQ+R+ A L DP+++++DEP LDP+
Sbjct: 184 AALWDEVNDRLDDNALGLS---GGQQQRLCIARCLAVDPEVILMDEPASALDPI 234
>gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter,
ATP-binding protein. This small clade of ABC-type
transporter ATP-binding protein components is found as a
three gene cassette along with a periplasmic
substrate-binding protein (TIGR03868) and a permease
(TIGR03869). The organisms containing this cassette are
all Actinobacteria and all contain numerous genes
requiring the coenzyme F420. This model was defined
based on five such organisms, four of which are lacking
all F420 biosynthetic capability save the final
side-chain polyglutamate attachment step (via the gene
cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and
marine actinobacterium PHSC20C1 this cassette is in an
apparent operon with the cofE gene and, in PHSC20C1,
also with a F420-dependent glucose-6-phosphate
dehydrogenase (TIGR03554). Based on these observations
we propose that this ATP-binding protein is a component
of an F420-0 (that is, F420 lacking only the
polyglutamate tail) transporter.
Length = 256
Score = 51.7 bits (124), Expect = 1e-08
Identities = 39/142 (27%), Positives = 65/142 (45%), Gaps = 21/142 (14%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAEDSPSY 79
GLLGP+G GK+TLL + LR D G++ L+ + + + R AL+ +DS +
Sbjct: 31 GLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHG---LSRRARARRVALVEQDSDTA 87
Query: 80 L---------------LEYYNCSTLEDVFL---YLCEQDQILFSLVGSESAFGGQQRRVS 121
+ + + D + L + + + GG+++RV
Sbjct: 88 VPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVH 147
Query: 122 FAVSLIHDPKILILDEPTVGLD 143
A +L +PK+L+LDEPT LD
Sbjct: 148 VARALAQEPKLLLLDEPTNHLD 169
>gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette
domain of methionine transporter. MetN (also known as
YusC) is an ABC-type transporter encoded by metN of the
metNPQ operon in Bacillus subtilis that is involved in
methionine transport. Other members of this system
include the MetP permease and the MetQ substrate binding
protein. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 233
Score = 51.8 bits (125), Expect = 1e-08
Identities = 47/148 (31%), Positives = 71/148 (47%), Gaps = 30/148 (20%)
Query: 19 YGLLGPSGCGKTTLLSCIVNRL-RLDHGSISLSARTV------------RDIGYMPQ-VG 64
+G++G SG GK+TL+ CI N L R GS+ + + R IG + Q
Sbjct: 34 FGIIGRSGAGKSTLIRCI-NGLERPTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFN 92
Query: 65 LMRSGALLAEDSPSYLLEYYNCSTLEDVFLYLCEQDQILFSLVGSE---SAF-----GGQ 116
L+ S + ++ + LE E + E+ L LVG E A+ GGQ
Sbjct: 93 LLSSRTVF--ENVALPLEIAGVPKAE-----IEERVLELLELVGLEDKADAYPAQLSGGQ 145
Query: 117 QRRVSFAVSLIHDPKILILDEPTVGLDP 144
++RV A +L ++PK+L+ DE T LDP
Sbjct: 146 KQRVGIARALANNPKVLLCDEATSALDP 173
>gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter,
ATP-binding subunit. This protein family is the
ATP-binding cassette subunit of binding
protein-dependent ABC transporter complex that strictly
co-occurs with TIGR03769. TIGRFAMs model TIGR03769
describes a protein domain that occurs singly or as one
of up to three repeats in proteins of a number of
Actinobacteria, including Propionibacterium acnes
KPA171202. The TIGR03769 domain occurs both in an
adjacent gene for the substrate-binding protein and in
additional (often nearby) proteins, often with
LPXTG-like sortase recognition signals. Homologous
ATP-binding subunits outside the scope of this family
include manganese transporter MntA in Synechocystis sp.
PCC 6803 and chelated iron transporter subunits. The
function of this transporter complex is unknown
[Transport and binding proteins, Unknown substrate].
Length = 223
Score = 51.8 bits (124), Expect = 1e-08
Identities = 44/151 (29%), Positives = 63/151 (41%), Gaps = 42/151 (27%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV----RDIGYMPQ------------- 62
GLLGP+G GKTTLL I+ + G++ ++ + R IGY+PQ
Sbjct: 10 GLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVA 69
Query: 63 ----------VGLMRSGALLAEDSPSYLLEYYNCSTLEDVFLYLCEQDQILFSLVGSESA 112
+G +R + + L + L D VG S
Sbjct: 70 HTVMSGRTGHIGWLRRPCVADFAAVRDALRRVGLTELAD-------------RPVGELS- 115
Query: 113 FGGQQRRVSFAVSLIHDPKILILDEPTVGLD 143
GGQ++RV A +L P +L+LDEP GLD
Sbjct: 116 -GGQRQRVLVARALATRPSVLLLDEPFTGLD 145
>gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the
cell division transporter. FtsE is a hydrophilic
nucleotide-binding protein that binds FtsX to form a
heterodimeric ATP-binding cassette (ABC)-type
transporter that associates with the bacterial inner
membrane. The FtsE/X transporter is thought to be
involved in cell division and is important for assembly
or stability of the septal ring.
Length = 214
Score = 51.3 bits (123), Expect = 1e-08
Identities = 43/142 (30%), Positives = 65/142 (45%), Gaps = 22/142 (15%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAEDSPSYL 80
L+GPSG GK+TLL I G+I ++ + V D+ L R ++ +D L
Sbjct: 32 LVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDF--RL 89
Query: 81 LEYYNCSTLEDVFLYL----------CEQDQILFSLVGSESAF--------GGQQRRVSF 122
L + + E+V L ++ LVG GG+Q+RV+
Sbjct: 90 L--PDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAI 147
Query: 123 AVSLIHDPKILILDEPTVGLDP 144
A ++++ P ILI DEPT LDP
Sbjct: 148 ARAIVNSPTILIADEPTGNLDP 169
>gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 253
Score = 51.4 bits (123), Expect = 1e-08
Identities = 49/175 (28%), Positives = 77/175 (44%), Gaps = 47/175 (26%)
Query: 10 NTVIFGV-------TAYGLLGPSGCGKTTLLSCIVNRLRLD-----HGSISLSARTV--- 54
N VI GV + L+GPSGCGK+TLL L L+ G + L R +
Sbjct: 17 NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSP 76
Query: 55 --------RDIGYMPQ---------------VGLMRSGALLAEDSPSYLLEYYNCSTLED 91
R++G + Q +G+ +G + ++ +E+ L+
Sbjct: 77 DVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEW----ALKK 132
Query: 92 VFLYLCEQDQILFSLVGSESAF-GGQQRRVSFAVSLIHDPKILILDEPTVGLDPV 145
L+ D++ L S GGQ++R+ A +L PKIL++DEPT +DPV
Sbjct: 133 AALW----DEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPV 183
>gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 290
Score = 51.6 bits (124), Expect = 2e-08
Identities = 24/48 (50%), Positives = 30/48 (62%), Gaps = 9/48 (18%)
Query: 106 LVG------SESAF---GGQQRRVSFAVSLIHDPKILILDEPTVGLDP 144
LVG + S F GGQ RRV+ A L +P++L+LDEPT GLDP
Sbjct: 131 LVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDP 178
>gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein
YrbF; Provisional.
Length = 269
Score = 51.3 bits (123), Expect = 2e-08
Identities = 50/156 (32%), Positives = 72/156 (46%), Gaps = 39/156 (25%)
Query: 16 VTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSI--------SLSAR---TVRDIGYMPQVG 64
+TA ++GPSG GKTTLL I ++ DHG I ++S TVR M
Sbjct: 35 ITA--IMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKRMSM---- 88
Query: 65 LMRSGALLAEDS---------------PSYLLEYYNCSTLEDVFLYLCEQDQILFSLVGS 109
L +SGAL + + P+ LL LE V L + L+ S
Sbjct: 89 LFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAK------LMPS 142
Query: 110 ESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPV 145
E + GG RR + A ++ +P +++ DEP VG DP+
Sbjct: 143 ELS-GGMARRAALARAIALEPDLIMFDEPFVGQDPI 177
>gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter
subunit; Provisional.
Length = 257
Score = 51.5 bits (123), Expect = 2e-08
Identities = 45/156 (28%), Positives = 68/156 (43%), Gaps = 34/156 (21%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSISLSA---RTVRD------IGYMPQVGLMRSGAL 71
++G SG GK+T L CI + GSI ++ VRD + Q+ L+R+
Sbjct: 36 IIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLT 95
Query: 72 LA----------------EDSPSYLLEYYNCSTLEDVFLYLC-----EQDQILFSLVGSE 110
+ ++P +L E YL E+ Q + + S
Sbjct: 96 MVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLS- 154
Query: 111 SAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVL 146
GGQQ+RVS A +L +P++L+ DEPT LDP L
Sbjct: 155 ---GGQQQRVSIARALAMEPEVLLFDEPTSALDPEL 187
>gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 280
Score = 51.3 bits (123), Expect = 2e-08
Identities = 28/48 (58%), Positives = 31/48 (64%), Gaps = 9/48 (18%)
Query: 106 LVG-SESAF--------GGQQRRVSFAVSLIHDPKILILDEPTVGLDP 144
LVG SES F GGQ RRV+ A L +PKIL+LDEPT GLDP
Sbjct: 131 LVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDP 178
>gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase
and permease components [General function prediction
only].
Length = 580
Score = 51.5 bits (124), Expect = 2e-08
Identities = 44/150 (29%), Positives = 66/150 (44%), Gaps = 33/150 (22%)
Query: 18 AYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRD---------IGYMPQ-VGLMR 67
A G++GPSG GK+TL +V GS+ L +R IGY+PQ V L
Sbjct: 364 ALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELF- 422
Query: 68 SG------ALLAEDSPSYLLEYYNCSTLEDVFLYLCEQDQILFSLVGSESAFG------- 114
G A E++ + + L V + IL G ++ G
Sbjct: 423 DGTIAENIARFGEEADPEKV--IEAARLAGV------HELILRLPQGYDTRIGEGGATLS 474
Query: 115 -GQQRRVSFAVSLIHDPKILILDEPTVGLD 143
GQ++R++ A +L DP +++LDEP LD
Sbjct: 475 GGQRQRIALARALYGDPFLVVLDEPNSNLD 504
>gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 235
Score = 50.9 bits (122), Expect = 2e-08
Identities = 46/145 (31%), Positives = 62/145 (42%), Gaps = 24/145 (16%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSI------------SLSARTV-----RDIGYMPQV 63
L GPSG GK+TLL + D G I + R V IGY+ Q
Sbjct: 42 LHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQF 101
Query: 64 --GLMRSGAL--LAEDSPSYLLEYYNCSTLEDVFLYLCEQDQILFSLVGSESAF-GGQQR 118
+ R AL +AE + + L + L+SL + + F GG+Q+
Sbjct: 102 LRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSL--APATFSGGEQQ 159
Query: 119 RVSFAVSLIHDPKILILDEPTVGLD 143
RV+ A I D IL+LDEPT LD
Sbjct: 160 RVNIARGFIVDYPILLLDEPTASLD 184
>gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of
glucan transporter and related proteins, subfamily C.
Glucan exporter ATP-binding protein. In A. tumefaciens
cyclic beta-1, 2-glucan must be transported into the
periplasmic space to exert its action as a virulence
factor. This subfamily belongs to the MRP-like family
and is involved in drug, peptide, and lipid export. The
MRP-like family, similar to all ABC proteins, have a
common four-domain core structure constituted by two
membrane-spanning domains each composed of six
transmembrane (TM) helices and two nucleotide-binding
domains (NBD). ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 229
Score = 50.7 bits (122), Expect = 2e-08
Identities = 34/145 (23%), Positives = 66/145 (45%), Gaps = 27/145 (18%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRD---------IGYMPQVGLMRSGAL 71
++GP+G GKTTL++ ++ G I + +RD IG + Q + SG +
Sbjct: 34 IVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTI 93
Query: 72 LAEDSPSYLLEYYNCSTLEDVFLYLCEQ----DQILFSLVGSESAFG--------GQQRR 119
+ + + ++ + ++ D I+ G ++ G G+++
Sbjct: 94 MEN------IRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQL 147
Query: 120 VSFAVSLIHDPKILILDEPTVGLDP 144
++ A +++ DPKILILDE T +D
Sbjct: 148 LAIARAMLRDPKILILDEATSNIDT 172
>gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 50.7 bits (121), Expect = 2e-08
Identities = 43/168 (25%), Positives = 78/168 (46%), Gaps = 38/168 (22%)
Query: 8 SLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRL-------RLDHGSISLSARTVRDIGYM 60
+N I+ L+GPSGCGK+T L C+ NR+ +++ G + L + + Y
Sbjct: 22 DINLPIYENKITALIGPSGCGKSTFLRCL-NRMNDLISNVKIE-GEVLLDGKNI----YD 75
Query: 61 PQVGLM----RSGALLAEDSPSYLLEYYNC------------STLEDVFLYLCEQ----D 100
V ++ R G + + +P + Y N L+ + + ++ D
Sbjct: 76 KDVDVVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWD 135
Query: 101 QILFSLVGSESAF---GGQQRRVSFAVSLIHDPKILILDEPTVGLDPV 145
++ L +SA GGQQ+R+ A ++ P ++++DEPT LDP+
Sbjct: 136 EVKDDL--KKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPI 181
>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter. This
model describes the photoreceptor protein (rim protein)
in eukaryotes. It is the member of ABC transporter
superfamily. Rim protein is a membrane glycoprotein which
is localized in the photoreceptor outer segment discs.
Mutation/s in its genetic loci is implicated in the
recessive Stargardt's disease [Transport and binding
proteins, Other].
Length = 2272
Score = 51.6 bits (123), Expect = 2e-08
Identities = 40/157 (25%), Positives = 70/157 (44%), Gaps = 32/157 (20%)
Query: 9 LNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV--------RDIGYM 60
LN + LG +G GKTT LS + L G++ + + + + +G
Sbjct: 949 LNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLGMC 1008
Query: 61 PQVGLMRSGALLAEDSPSYLLEYYNC-------------STLEDVFLYLCEQDQILFSLV 107
PQ ++ +AE ++L Y + LED L+ ++
Sbjct: 1009 PQHNILFHHLTVAE----HILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEE------ 1058
Query: 108 GSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDP 144
++ GG QR++S A++ + D K+++LDEPT G+DP
Sbjct: 1059 -AQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDP 1094
Score = 49.2 bits (117), Expect = 1e-07
Identities = 40/140 (28%), Positives = 68/140 (48%), Gaps = 18/140 (12%)
Query: 19 YGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV--------RDIGYMPQVGLMRSGA 70
+GLLG +G GKTT + + G +++ +++ +++GY PQ +
Sbjct: 1968 FGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNMGYCPQFDAIDD-- 2025
Query: 71 LLAEDSPSYL---LEYYNCSTLEDVFLYLCEQDQILF---SLVGSESAFGGQQRRVSFAV 124
LL YL L +E V + + + L G+ S GG +R++S A+
Sbjct: 2026 LLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYS--GGNKRKLSTAI 2083
Query: 125 SLIHDPKILILDEPTVGLDP 144
+LI P +++LDEPT G+DP
Sbjct: 2084 ALIGCPPLVLLDEPTTGMDP 2103
>gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA. This
model describes the cyt c biogenesis protein encoded by
ccmA in bacteria. An exception is, an arabidopsis
protein. Quite likely this is encoded by an organelle.
Bacterial c-type cytocromes are located on the
periplasmic side of the cytoplasmic membrane. Several
gene products encoded in a locus designated as 'ccm' are
implicated in the transport and assembly of the
functional cytochrome C. This cluster includes genes:
ccmA;B;C;D;E;F;G and H. The posttranslational pathway
includes the transport of heme moiety, the secretion of
the apoprotein and the covalent attachment of the heme
with the apoprotein. The proteins ccmA and B represent
an ABC transporter; ccmC and D participate in heme
transfer to ccmE, which function as a periplasmic heme
chaperone. The presence of ccmF, G and H is suggested to
be obligatory for the final functional assembly of
cytochrome c [Protein fate, Protein and peptide
secretion and trafficking, Transport and binding
proteins, Other].
Length = 198
Score = 50.1 bits (120), Expect = 3e-08
Identities = 39/135 (28%), Positives = 53/135 (39%), Gaps = 20/135 (14%)
Query: 23 GPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSG---ALLAEDSPSY 79
GP+G GKTTLL + LR D G + + + + P ++ G L E S
Sbjct: 33 GPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLGHLPGLKPELSALE 92
Query: 80 LLEYYN--CST--------LEDVFLYLCEQDQILFSLVGSESAFGGQQRRVSFAVSLIHD 129
L ++ L V L E SA GQQRR++ A +
Sbjct: 93 NLHFWAAIHGGAQRTIEDALAAVGLTGFED-----LPAAQLSA--GQQRRLALARLWLSR 145
Query: 130 PKILILDEPTVGLDP 144
+ ILDEPT LD
Sbjct: 146 APLWILDEPTTALDK 160
>gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC
transporter, HlyB family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion [Protein fate, Protein and
peptide secretion and trafficking].
Length = 694
Score = 50.9 bits (122), Expect = 3e-08
Identities = 45/153 (29%), Positives = 77/153 (50%), Gaps = 17/153 (11%)
Query: 7 SSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRL-DHGSISLSARTV---------RD 56
S+LN I G++GPSG GK+TL ++ RL HG + + + R
Sbjct: 474 SNLNLDIKPGEFIGIVGPSGSGKSTLTK-LLQRLYTPQHGQVLVDGVDLAIADPAWLRRQ 532
Query: 57 IGYMPQVGLMRSGAL---LAEDSPSYLLEYY-NCSTLEDVFLYLCEQDQILFSLVGSESA 112
+G + Q ++ S ++ +A +P E+ + + L ++ E Q + VG + A
Sbjct: 533 MGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGA 592
Query: 113 F--GGQQRRVSFAVSLIHDPKILILDEPTVGLD 143
GGQ++R++ A +L+ +P+ILI DE T LD
Sbjct: 593 NLSGGQRQRIAIARALVGNPRILIFDEATSALD 625
>gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 265
Score = 50.8 bits (121), Expect = 3e-08
Identities = 51/175 (29%), Positives = 79/175 (45%), Gaps = 42/175 (24%)
Query: 8 SLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLR----LDH--GSISLSARTVRDIGYMP 61
++N ++ L+GPSGCGK+T L C NR+ +H G I L V + P
Sbjct: 34 NINMMVHEKQVTALIGPSGCGKSTFLRCF-NRMHDLYPGNHYEGEIILHPDNVNILS--P 90
Query: 62 QVG----LMRSGALLAEDSP---------SY-----------LLEYYNCSTLEDVFLYLC 97
+V MR + + +P +Y +LE + L + L+
Sbjct: 91 EVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDE 150
Query: 98 EQD---QILFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLSFS 149
+D + F+L G GQQ+R+ A +L DP+IL+ DEPT LDP+ + S
Sbjct: 151 VKDRLGDLAFNLSG------GQQQRLCIARALATDPEILLFDEPTSALDPIATAS 199
>gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 207
Score = 49.9 bits (120), Expect = 3e-08
Identities = 41/147 (27%), Positives = 52/147 (35%), Gaps = 44/147 (29%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQV----------------- 63
L GP+G GKTTLL I L G+I L + D
Sbjct: 33 LTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLGHRNAMKPALTVAE 92
Query: 64 ------GLMRSGALLAEDSPSYLLEYYNCSTLEDV-FLYLCEQDQILFSLVGSESAFGGQ 116
+ L + LE + L + F YL SA GQ
Sbjct: 93 NLEFWAAFLGGEELDIAAA----LEAVGLAPLAHLPFGYL--------------SA--GQ 132
Query: 117 QRRVSFAVSLIHDPKILILDEPTVGLD 143
+RRV+ A L+ + I ILDEPT LD
Sbjct: 133 KRRVALARLLVSNRPIWILDEPTAALD 159
>gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding
cassette component of monosaccharide transport system.
This family represents domain II of the carbohydrate
uptake proteins that transport only monosaccharides
(Monos). The Carb_Monos family is involved in the uptake
of monosaccharides, such as pentoses (such as xylose,
arabinose, and ribose) and hexoses (such as xylose,
arabinose, and ribose), that cannot be broken down to
simple sugars by hydrolysis. In members of Carb_Monos
family the single hydrophobic gene product forms a
homodimer, while the ABC protein represents a fusion of
two nucleotide-binding domains. However, it is assumed
that two copies of the ABC domains are present in the
assembled transporter.
Length = 182
Score = 49.7 bits (120), Expect = 3e-08
Identities = 38/126 (30%), Positives = 53/126 (42%), Gaps = 21/126 (16%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV--RDIGYMPQVGLMRSGALLAEDSP 77
G+ G G G+T L + G I+L + V R + G+ A + ED
Sbjct: 30 GIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGI----AYVPEDRK 85
Query: 78 SYLLEYYNCSTLEDVFLYLCEQDQILFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDE 137
L L L + I S + S GG Q++V A L DP++LILDE
Sbjct: 86 REGL-----------VLDLSVAENIALSSLLS----GGNQQKVVLARWLARDPRVLILDE 130
Query: 138 PTVGLD 143
PT G+D
Sbjct: 131 PTRGVD 136
>gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 258
Score = 50.4 bits (120), Expect = 3e-08
Identities = 44/159 (27%), Positives = 71/159 (44%), Gaps = 39/159 (24%)
Query: 16 VTAYGLLGPSGCGKTTLLSCI------VNRLRLDHGSISLSARTVRDIGYMPQVGLM--- 66
VTA L+GPSGCGK+T + C+ + R++ G +S+ + Y P V ++
Sbjct: 40 VTA--LIGPSGCGKSTFIRCLNRMNDLIKNCRIE-GKVSIEGEDI----YEPDVDVVELR 92
Query: 67 -RSGALLAEDSPSYLLEYYNCS-------------------TLEDVFLYLCEQDQILFSL 106
G + + +P + Y N + L L+ D++
Sbjct: 93 KNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPA 152
Query: 107 VGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPV 145
+ S GGQQ+R+ A +L PKI++ DEPT LDP+
Sbjct: 153 L---SLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPI 188
>gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette
domain 2 of RNase L inhibitor. The ABC ATPase, RNase L
inhibitor (RLI), is a key enzyme in ribosomal
biogenesis, formation of translation preinitiation
complexes, and assembly of HIV capsids. RLI's are not
transport proteins and thus cluster with a group of
soluble proteins that lack the transmembrane components
commonly found in other members of the family.
Structurally, RLI's have an N-terminal Fe-S domain and
two nucleotide-binding domains which are arranged to
form two composite active sites in their interface
cleft. RLI is one of the most conserved enzymes between
archaea and eukaryotes with a sequence identity of more
than 48%. The high degree of evolutionary conservation
suggests that RLI performs a central role in archaeal
and eukaryotic physiology.
Length = 246
Score = 50.1 bits (120), Expect = 3e-08
Identities = 39/129 (30%), Positives = 59/129 (45%), Gaps = 15/129 (11%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQV----GLMRSGALLAED 75
G+LGP+G GKTT + + L+ D G I + + + Y PQ LL+
Sbjct: 29 GILGPNGIGKTTFIKMLAGVLKPDEGDIEIE---LDTVSYKPQYIKADYEGTVRDLLSSI 85
Query: 76 SPS-YLLEYYNCSTLEDVFLYLCEQDQILFSLVGSESAFGGQQRRVSFAVSLIHDPKILI 134
+ Y Y+ + + + +QIL V S GG+ +RV+ A L D I +
Sbjct: 86 TKDFYTHPYFKTEIAKPLQI-----EQILDREVPELS--GGELQRVAIAACLSKDADIYL 138
Query: 135 LDEPTVGLD 143
LDEP+ LD
Sbjct: 139 LDEPSAYLD 147
>gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 50.3 bits (120), Expect = 4e-08
Identities = 48/158 (30%), Positives = 70/158 (44%), Gaps = 36/158 (22%)
Query: 17 TAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV---RDIGYMPQVGLMRSGALLA 73
T L+GPSG GK+TLL + NRL + +S +DI M + L R ++
Sbjct: 30 TITALMGPSGSGKSTLLR-VFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVF 88
Query: 74 EDSPSYLLEYYNCSTLEDVFLYL-------------------CEQDQI-------LFSLV 107
+ P+ + N S E+V L L E+ Q+ L +
Sbjct: 89 Q-IPNPIP---NLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPA 144
Query: 108 GSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPV 145
G S GGQQ+R+ A +L P++L+ DEPT LDP
Sbjct: 145 GKLS--GGQQQRLCIARALAFQPEVLLADEPTANLDPE 180
>gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase
component [Amino acid transport and metabolism].
Length = 256
Score = 50.1 bits (120), Expect = 5e-08
Identities = 44/159 (27%), Positives = 73/159 (45%), Gaps = 41/159 (25%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDH-GSISLSA-----RTVRDIGYMP----QVGLMRSGA 70
++G SG GK+T L CI N L GSI ++ + +D P Q+ +R+
Sbjct: 37 IIGSSGSGKSTFLRCI-NFLEKPSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLRTRL 95
Query: 71 LLAEDSPSYLLEYYNC----STLEDVF------LYLCEQDQI-----LFSLVG------S 109
+ +++N + LE+V L + + + I + VG +
Sbjct: 96 -------GMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADA 148
Query: 110 ESAF--GGQQRRVSFAVSLIHDPKILILDEPTVGLDPVL 146
A GGQQ+RV+ A +L +P++++ DEPT LDP L
Sbjct: 149 YPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPEL 187
>gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 249
Score = 49.8 bits (119), Expect = 5e-08
Identities = 45/163 (27%), Positives = 76/163 (46%), Gaps = 47/163 (28%)
Query: 16 VTAYGLLGPSGCGKTTLLSCIVNRL-------RLDHGSISLSARTVR---DIGYMPQVGL 65
VTA L+GPSGCGK+TLL C+ NR+ ++ G +++ + D+ +
Sbjct: 31 VTA--LIGPSGCGKSTLLRCL-NRMNDLIEGVKIT-GKLTMDGEDIYGNIDVADLR---- 82
Query: 66 MRSGALLAEDSPSYLLEYYNCSTLEDVFLYLCEQ---DQILFSLVGSES----------- 111
++ G + + +P + S E+V L Q D+ + V S
Sbjct: 83 IKVGMVFQKPNP------FPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVK 136
Query: 112 ------AF---GGQQRRVSFAVSLIHDPKILILDEPTVGLDPV 145
AF GGQQ+R+ A ++ +P ++++DEPT LDP+
Sbjct: 137 DRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPI 179
>gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 268
Score = 50.0 bits (119), Expect = 5e-08
Identities = 50/160 (31%), Positives = 77/160 (48%), Gaps = 40/160 (25%)
Query: 16 VTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGY---------MPQVGLM 66
VTA L+GPSGCGK+T L I NR+ + SAR+ +I Y + V L
Sbjct: 49 VTA--LIGPSGCGKSTFLRSI-NRM----NDLIPSARSEGEILYEGLNILDSNINVVNLR 101
Query: 67 RS-GALLAEDSP---------SYLLEY---YNCSTLEDVF--------LYLCEQDQILFS 105
R G + + +P ++ L+Y S L+++ L+ +D++ S
Sbjct: 102 REIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSS 161
Query: 106 LVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPV 145
+ S GGQQ+R+ A +L P +L+LDEP LDP+
Sbjct: 162 AL---SLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPI 198
>gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter,
ATP-binding protein. Members of this family are the
ATP-binding protein of a conserved four gene ABC
transporter operon found next to ectoine unilization
operons and ectoine biosynthesis operons. Ectoine is a
compatible solute that protects enzymes from high
osmolarity. It is released by some species in response
to hypoosmotic shock, and it is taken up by a number of
bacteria as a compatible solute or for consumption. This
family shows strong sequence similiarity to a number of
amino acid ABC transporter ATP-binding proteins.
Length = 252
Score = 49.8 bits (119), Expect = 6e-08
Identities = 41/164 (25%), Positives = 65/164 (39%), Gaps = 51/164 (31%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAEDSP--- 77
L+GPSG GK+T+L ++ +D G I + + +MP R+G L+ D
Sbjct: 31 LIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLY---HMPG----RNGPLVPADEKHLR 83
Query: 78 ------SYLLEYYNCSTLEDVFLYLCEQDQI---------------------LFSLVG-- 108
+ + +N +F + D + L +VG
Sbjct: 84 QMRNKIGMVFQSFN------LFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLA 137
Query: 109 -SESAF-----GGQQRRVSFAVSLIHDPKILILDEPTVGLDPVL 146
GGQQ+RV+ A +L PK+++ DE T LDP L
Sbjct: 138 DKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPEL 181
>gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 320
Score = 49.8 bits (119), Expect = 6e-08
Identities = 20/31 (64%), Positives = 23/31 (74%)
Query: 114 GGQQRRVSFAVSLIHDPKILILDEPTVGLDP 144
GGQ+RRV+ A L P+ILI DEPT GLDP
Sbjct: 179 GGQKRRVAIAGILAIQPEILIFDEPTAGLDP 209
>gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family
protein. [Transport and binding proteins, Other].
Length = 1394
Score = 50.1 bits (120), Expect = 6e-08
Identities = 49/152 (32%), Positives = 73/152 (48%), Gaps = 32/152 (21%)
Query: 16 VTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV----------RDIGYMPQVGL 65
+TA L+G SG GKTTLL+ + R+ G I+ R V R IGY+ Q L
Sbjct: 791 LTA--LMGASGAGKTTLLNVLAERV--TTGVITGGDRLVNGRPLDSSFQRSIGYVQQQDL 846
Query: 66 ----------MRSGALLAEDSPSYLLEYYNCSTLEDVFLYLCEQDQILFSLVGSESAFG- 114
+R A L + P + + +E+V + L E + ++VG G
Sbjct: 847 HLPTSTVRESLRFSAYLRQ--PKSVSKSEKMEYVEEV-IKLLEMESYADAVVG-VPGEGL 902
Query: 115 --GQQRRVSFAVSLIHDPKILI-LDEPTVGLD 143
Q++R++ V L+ PK+L+ LDEPT GLD
Sbjct: 903 NVEQRKRLTIGVELVAKPKLLLFLDEPTSGLD 934
Score = 32.0 bits (73), Expect = 0.094
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 114 GGQQRRVSFAVSLIHDPKILILDEPTVGLD 143
GG+++RVS A + + KI D T GLD
Sbjct: 212 GGERKRVSIAEASLGGAKIQCWDNATRGLD 241
>gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit;
Provisional.
Length = 377
Score = 49.8 bits (119), Expect = 6e-08
Identities = 44/158 (27%), Positives = 68/158 (43%), Gaps = 31/158 (19%)
Query: 9 LNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIG-YMPQVGLMR 67
++ I+ + LLG SGCGK+TLL + + G I L + + Y + +M
Sbjct: 38 VSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINMMF 97
Query: 68 SGALLAEDSPSYLLEYYNCSTLEDVFLYLCEQDQI-----------LFSLVGSE------ 110
SY L + T+E + +QD++ + LV +
Sbjct: 98 Q---------SYAL--FPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRK 146
Query: 111 --SAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVL 146
GGQ++RV+ A SL PK+L+LDEP LD L
Sbjct: 147 PHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKL 184
>gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the
histidine and glutamine transporters. HisP and GlnQ are
the ATP-binding components of the bacterial periplasmic
histidine and glutamine permeases, respectively.
Histidine permease is a multi-subunit complex containing
the HisQ and HisM integral membrane subunits and two
copies of HisP. HisP has properties intermediate between
those of integral and peripheral membrane proteins and
is accessible from both sides of the membrane,
presumably by its interaction with HisQ and HisM. The
two HisP subunits form a homodimer within the complex.
The domain structure of the amino acid uptake systems is
typical for prokaryotic extracellular solute binding
protein-dependent uptake systems. All of the amino acid
uptake systems also have at least one, and in a few
cases, two extracellular solute binding proteins located
in the periplasm of Gram-negative bacteria, or attached
to the cell membrane of Gram-positive bacteria. The
best-studied member of the PAAT (polar amino acid
transport) family is the HisJQMP system of S.
typhimurium, where HisJ is the extracellular solute
binding proteins and HisP is the ABC protein.
Length = 213
Score = 49.1 bits (118), Expect = 7e-08
Identities = 17/31 (54%), Positives = 24/31 (77%)
Query: 114 GGQQRRVSFAVSLIHDPKILILDEPTVGLDP 144
GGQQ+RV+ A +L +PK+++ DEPT LDP
Sbjct: 138 GGQQQRVAIARALAMNPKVMLFDEPTSALDP 168
Score = 38.3 bits (90), Expect = 5e-04
Identities = 16/30 (53%), Positives = 21/30 (70%), Gaps = 2/30 (6%)
Query: 21 LLGPSGCGKTTLLSCIVNRL-RLDHGSISL 49
++GPSG GK+TLL CI N L D G+I +
Sbjct: 31 IIGPSGSGKSTLLRCI-NLLEEPDSGTIII 59
>gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 286
Score = 49.8 bits (119), Expect = 7e-08
Identities = 44/151 (29%), Positives = 72/151 (47%), Gaps = 33/151 (21%)
Query: 19 YGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSA------------RTVR-DIGYMPQVGL 65
Y ++G +G GK+TL+ I L+ G++++ R VR IG + Q
Sbjct: 36 YAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQF-- 93
Query: 66 MRSGALLAEDSPSYLLEY----YNCSTLEDVFLYLCEQDQILFSL-----VGSESAF--- 113
+ L ED+ + + + + L++V Y ++L L V S+S F
Sbjct: 94 --PESQLFEDTVEREIIFGPKNFKMN-LDEVKNY---AHRLLMDLGFSRDVMSQSPFQMS 147
Query: 114 GGQQRRVSFAVSLIHDPKILILDEPTVGLDP 144
GGQ R+++ L +P I++LDEPT GLDP
Sbjct: 148 GGQMRKIAIVSILAMNPDIIVLDEPTAGLDP 178
>gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 259
Score = 49.6 bits (118), Expect = 7e-08
Identities = 44/156 (28%), Positives = 72/156 (46%), Gaps = 32/156 (20%)
Query: 16 VTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSA-----------------RTVRDIG 58
VTA ++GPSGCGK+T + +NR+ G + + R R IG
Sbjct: 35 VTA--IIGPSGCGKSTFIK-TLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIG 91
Query: 59 YMPQ------VGLMRS---GALLAEDSPSYLLEYYNCSTLEDVFLYLCEQDQILFSLVGS 109
+ Q + + + G ++ P L+ S L+ L+ +D++ S +G
Sbjct: 92 MVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGL 151
Query: 110 ESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPV 145
GGQQ+R+ A +L PK+L++DEP LDP+
Sbjct: 152 S---GGQQQRLCIARALAIKPKVLLMDEPCSALDPI 184
>gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein;
Provisional.
Length = 250
Score = 49.3 bits (118), Expect = 8e-08
Identities = 46/158 (29%), Positives = 77/158 (48%), Gaps = 36/158 (22%)
Query: 16 VTAYGLLGPSGCGKTTLLSCIVNRL-------RLDHGSISLSARTVRDIGYMPQVGLMRS 68
VTA L+GPSGCGK+T L + NR+ +++ G + L + + R
Sbjct: 31 VTA--LIGPSGCGKSTFLRTL-NRMNDLIPSVKIE-GEVLLDGQDIYKSDIDVNQLRKRV 86
Query: 69 GALLAEDSPSYLLEYYNCS------TLEDVFLYLCEQDQIL-FSLVGS-----------E 110
G + + +P + Y N + ++D + D+I+ SL G+ +
Sbjct: 87 GMVFQQPNPFPMSIYDNVAYGPRTHGIKDK----KKLDEIVEKSLKGAALWDEVKDRLKK 142
Query: 111 SAFG---GQQRRVSFAVSLIHDPKILILDEPTVGLDPV 145
SA G GQQ+R+ A +L +P++L++DEPT LDP+
Sbjct: 143 SALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPI 180
>gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component
[Carbohydrate transport and metabolism].
Length = 500
Score = 49.4 bits (119), Expect = 1e-07
Identities = 43/158 (27%), Positives = 62/158 (39%), Gaps = 38/158 (24%)
Query: 13 IFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISL-----SARTVRD-----IGYMP- 61
I G+ GL+G G+T L + G I L R+ RD I Y+P
Sbjct: 287 ILGI--AGLVG---AGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPE 341
Query: 62 ---QVGLMRSGALLAEDSPSYLLEYYNCS---------TLEDVFLYLCEQDQI----LFS 105
GL+ ++ + + L + E L +I
Sbjct: 342 DRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRL----RIKTPSPEQ 397
Query: 106 LVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLD 143
+G+ S GG Q++V A L DPK+LILDEPT G+D
Sbjct: 398 PIGTLS--GGNQQKVVLARWLATDPKVLILDEPTRGID 433
Score = 36.3 bits (85), Expect = 0.003
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 106 LVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDP 144
LVG S Q++ V A +L D ++LILDEPT L
Sbjct: 142 LVGDLS--IAQRQMVEIARALSFDARVLILDEPTAALTV 178
Score = 27.9 bits (63), Expect = 2.2
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVR 55
LLG +G GK+TL+ + D G I + + V
Sbjct: 38 ALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVA 73
>gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of
iron-sulfur clusters transporter, subfamily C. ATM1 is
an ABC transporter that is expressed in the
mitochondria. Although the specific function of ATM1 is
unknown, its disruption results in the accumulation of
excess mitochondrial iron, loss of mitochondrial
cytochromes, oxidative damage to mitochondrial DNA, and
decreased levels of cytosolic heme proteins. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 236
Score = 48.8 bits (117), Expect = 1e-07
Identities = 36/144 (25%), Positives = 66/144 (45%), Gaps = 27/144 (18%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRD---------IGYMPQVGLMRSGAL 71
++GPSG GK+T+L + + GSI + + +R+ IG +PQ +
Sbjct: 32 IVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVVPQ------DTV 85
Query: 72 LAEDSPSYLLEYYNCSTLEDVFLYLCEQDQILFSLVGSESAF------------GGQQRR 119
L D+ Y + Y ++ + + QI ++ + GG+++R
Sbjct: 86 LFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQR 145
Query: 120 VSFAVSLIHDPKILILDEPTVGLD 143
V+ A +++ +P IL+LDE T LD
Sbjct: 146 VAIARAILKNPPILLLDEATSALD 169
>gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis
ATP-binding export protein. CcmA, the ATP-binding
component of the bacterial CcmAB transporter. The CCM
family is involved in bacterial cytochrome c biogenesis.
Cytochrome c maturation in E. coli requires the ccm
operon, which encodes eight membrane proteins
(CcmABCDEFGH). CcmE is a periplasmic heme chaperon that
binds heme covalently and transfers it onto
apocytochrome c in the presence of CcmF, CcmG, and CcmH.
The CcmAB proteins represent an ABC transporter and the
CcmCD proteins participate in heme transfer to CcmE.
Length = 201
Score = 48.6 bits (116), Expect = 1e-07
Identities = 37/128 (28%), Positives = 51/128 (39%), Gaps = 6/128 (4%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSG---ALLAEDSP 77
+ GP+G GKTTLL + G + L+ + GL+ G + S
Sbjct: 31 VTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLSV 90
Query: 78 SYLLEYYN--CSTLEDVFLYLCEQDQILFSLVGSESAFGGQQRRVSFAVSLIHDPKILIL 135
L +++ S E V L F GQQRRV+ A L+ + IL
Sbjct: 91 LENLRFWHADHSD-EQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWIL 149
Query: 136 DEPTVGLD 143
DEPT LD
Sbjct: 150 DEPTTALD 157
>gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional.
Length = 590
Score = 49.4 bits (119), Expect = 1e-07
Identities = 36/128 (28%), Positives = 57/128 (44%), Gaps = 15/128 (11%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQ-VGL---MRSGALLAED 75
G++GP+G GKTT + L+ D G + + I Y PQ + LL
Sbjct: 369 GIVGPNGIGKTTFAKLLAGVLKPDEGEVDPELK----ISYKPQYIKPDYDGTVEDLLRSI 424
Query: 76 SPSYLLEYYNCSTLEDVFLYLCEQDQILFSLVGSESAFGGQQRRVSFAVSLIHDPKILIL 135
+ YY ++ + L +++L V S GG+ +RV+ A L D + +L
Sbjct: 425 TDDLGSSYYKSEIIKPLQL-----ERLLDKNVKDLS--GGELQRVAIAACLSRDADLYLL 477
Query: 136 DEPTVGLD 143
DEP+ LD
Sbjct: 478 DEPSAHLD 485
Score = 27.1 bits (61), Expect = 3.7
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 114 GGQQRRVSFAVSLIHDPKILILDEPTVGLD 143
GG+ +RV+ A +L+ D DEPT LD
Sbjct: 215 GGELQRVAIAAALLRDADFYFFDEPTSYLD 244
Score = 26.7 bits (60), Expect = 6.0
Identities = 9/14 (64%), Positives = 12/14 (85%)
Query: 20 GLLGPSGCGKTTLL 33
G+LGP+G GKTT +
Sbjct: 103 GILGPNGIGKTTAV 116
>gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 48.9 bits (116), Expect = 1e-07
Identities = 45/159 (28%), Positives = 73/159 (45%), Gaps = 37/159 (23%)
Query: 16 VTAYGLLGPSGCGKTTLLSCIVNRL-------RLDHGSISLSARTVRDIGYMPQVGLMRS 68
VTA ++GPSGCGK+T+L I NR+ R+ G I L + D G P R
Sbjct: 32 VTA--IIGPSGCGKSTVLRSI-NRMHDLVPSARVT-GKILLDDTDIYDRGVDPVSIRRRV 87
Query: 69 GALLAEDSPSYLLEYYNC---------------------STLEDVFLYLCEQDQILFSLV 107
G + + +P + Y+ S+L+ V L+ D++ L
Sbjct: 88 GMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALW----DEVKDRLK 143
Query: 108 GSESAF-GGQQRRVSFAVSLIHDPKILILDEPTVGLDPV 145
+ GGQQ+R+ A ++ P+++++DEP LDP+
Sbjct: 144 SNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPI 182
>gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein;
Provisional.
Length = 267
Score = 49.0 bits (117), Expect = 1e-07
Identities = 47/166 (28%), Positives = 75/166 (45%), Gaps = 51/166 (30%)
Query: 16 VTAYGLLGPSGCGKTTLLSCIVNRLR--LDH----GSISLSARTVRD------------- 56
VTA +GPSGCGK+T L C+ NR+ +D G I+L + D
Sbjct: 47 VTA--FIGPSGCGKSTFLRCL-NRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVG 103
Query: 57 ----------------IGYMPQV-GLMRSGALLAEDSPSYLLEYYNCSTLEDVFLYLCEQ 99
+ Y P++ GL RS A L E ++E ++L L+ +
Sbjct: 104 MVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDE-----IVE----TSLRKAGLWEEVK 154
Query: 100 DQILFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPV 145
D++ G GGQQ+R+ A ++ P+++++DEP LDP+
Sbjct: 155 DRLHEPGTGLS---GGQQQRLCIARAIAVSPEVILMDEPCSALDPI 197
>gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 261
Score = 48.9 bits (116), Expect = 1e-07
Identities = 49/162 (30%), Positives = 72/162 (44%), Gaps = 40/162 (24%)
Query: 16 VTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIG---YMPQVGLMR----- 67
VTA ++GPSGCGK+T L C+ NR+ + + R V Y +V L R
Sbjct: 35 VTA--IIGPSGCGKSTFLKCL-NRMNELESEVRVEGR-VEFFNQNIYERRVNLNRLRRQV 90
Query: 68 -------------------SGALLAEDSPSYLLEYYNCSTLEDVFLYLCEQDQILFSLVG 108
G + P ++ S L+D L+ D+I +
Sbjct: 91 SMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLW----DEIKHKI-- 144
Query: 109 SESAF---GGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLS 147
+SA GGQQ+R+ A +L PK+L++DEP GLDP+ S
Sbjct: 145 HKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIAS 186
>gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC
transporter, PrtD family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion [Protein fate, Protein and
peptide secretion and trafficking].
Length = 544
Score = 48.9 bits (117), Expect = 1e-07
Identities = 44/149 (29%), Positives = 65/149 (43%), Gaps = 35/149 (23%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRD---------IGYMPQ-VGLMRSG 69
++GPSG GK+TL IV GS+ L ++ IGY+PQ V L G
Sbjct: 348 AIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELF-PG 406
Query: 70 ------ALLAEDSPSYLLEYYNCSTLEDVFLYLCEQDQILFSL---------VGSESAFG 114
A E++ + + L V + IL L G + G
Sbjct: 407 TVAENIARFGENADPE--KIIEAAKLAGV------HELIL-RLPDGYDTVIGPGGATLSG 457
Query: 115 GQQRRVSFAVSLIHDPKILILDEPTVGLD 143
GQ++R++ A +L DPK+++LDEP LD
Sbjct: 458 GQRQRIALARALYGDPKLVVLDEPNSNLD 486
>gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 288
Score = 48.6 bits (115), Expect = 1e-07
Identities = 41/144 (28%), Positives = 65/144 (45%), Gaps = 21/144 (14%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAEDSPSY 79
L+G +G GK+TLL + L+ G +++ V ++ +R + P
Sbjct: 36 ALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPES 95
Query: 80 LLEYYNCSTLEDV------FLYLCEQDQIL----FSLVGSESAF---------GGQQRRV 120
L + + L+DV F E+ + + +VG F GGQ RRV
Sbjct: 96 QL--FEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRV 153
Query: 121 SFAVSLIHDPKILILDEPTVGLDP 144
+ A L +P++L+LDEPT GLDP
Sbjct: 154 AIAGILAMEPEVLVLDEPTAGLDP 177
>gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK.
Members of this family are the PhnK protein of C-P
lyase systems for utilization of phosphonates. These
systems resemble phosphonatase-based systems in having a
three component ABC transporter, where TIGR01097 is the
permease, TIGR01098 is the phosphonates binding protein,
and TIGR02315 is the ATP-binding cassette (ABC) protein.
They differ, however, in having, typically, ten or more
additional genes, many of which are believed to form a
membrane-associated complex. This protein (PhnK) and the
adjacent-encoded PhnL resemble transporter ATP-binding
proteins but are suggested, based on mutatgenesis
studies, to be part of this complex rather than part of
a transporter per se [Central intermediary metabolism,
Phosphorus compounds].
Length = 253
Score = 48.3 bits (115), Expect = 2e-07
Identities = 42/150 (28%), Positives = 65/150 (43%), Gaps = 28/150 (18%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISLSART--VRDIGYMPQVG---LMRSGALLAE 74
G++G SG GK+TLL C+ RL DHG+ + R+ ++ + + LMR+
Sbjct: 33 GIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERRRLMRTEWGFVH 92
Query: 75 DSPSYLLE--------------------YYNCSTLEDVFLYLCEQDQILFSLVGSESAF- 113
+P L Y N +L E D + AF
Sbjct: 93 QNPRDGLRMRVSAGANIGERLMAIGARHYGNIRATAQDWLEEVEIDPT--RIDDLPRAFS 150
Query: 114 GGQQRRVSFAVSLIHDPKILILDEPTVGLD 143
GG Q+R+ A +L+ P+++ +DEPT GLD
Sbjct: 151 GGMQQRLQIARNLVTRPRLVFMDEPTGGLD 180
>gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding
subunit. This model describes the glycine
betaine/L-proline ATP binding subunit in bacteria and
its equivalents in archaea. This transport system belong
to the larger ATP-Binding Cassette (ABC) transporter
superfamily. The characteristic feature of these
transporter is the obligatory coupling of ATP hydrolysis
to substrate translocation. The minimal configuration of
bacterial ABC transport system: an ATPase or ATP binding
subunit; An integral membrane protein; a hydrophilic
polypetpide, which likely functions as substrate binding
protein. Functionally, this transport system is involved
in osmoregulation. Under conditions of stress, the
organism recruits these transport system to accumulate
glycine betaine and other solutes which offer
osmo-protection. It has been demonstrated that glycine
betaine uptake is accompanied by symport with sodium
ions. The locus has been named variously as proU or
opuA. A gene library from L.lactis functionally
complements an E.coli proU mutant. The comlementing
locus is similar to a opuA locus in B.sutlis. This
clarifies the differences in nomenclature [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 363
Score = 48.3 bits (115), Expect = 2e-07
Identities = 39/149 (26%), Positives = 59/149 (39%), Gaps = 31/149 (20%)
Query: 21 LLGPSGCGKTTLLSCIVNRLR--------------LDHGSISLSARTVRDIGYMPQ-VGL 65
++G SG GK+T + ++NRL + + L + IG + Q L
Sbjct: 24 IMGLSGSGKSTTVR-MLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFAL 82
Query: 66 MRSGALLAEDSPSYLLEYYNCSTLEDVFLYLCEQDQILFSLVGSESAF--------GGQQ 117
+L + S E E E+ L LVG E GG Q
Sbjct: 83 FPHMTIL--QNTSLGPELLGWPEQERK-----EKALELLKLVGLEEYEHRYPDELSGGMQ 135
Query: 118 RRVSFAVSLIHDPKILILDEPTVGLDPVL 146
+RV A +L +P IL++DE LDP++
Sbjct: 136 QRVGLARALAAEPDILLMDEAFSALDPLI 164
>gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 48.1 bits (114), Expect = 2e-07
Identities = 45/153 (29%), Positives = 73/153 (47%), Gaps = 32/153 (20%)
Query: 20 GLLGPSGCGKTTLLSC------IVNRLRLDHGSISLSARTVRDIGYMPQVGLM----RSG 69
++GPSGCGK+TLL IV+ RL+ G++ L + Y P + ++ R G
Sbjct: 34 AIIGPSGCGKSTLLRALNRMNDIVSGARLE-GAVLLDNENI----YSPNLDVVNLRKRVG 88
Query: 70 ALLAEDSP------------SYLLEYYNCSTLEDVFLYLCEQ----DQILFSLVGSESAF 113
+ + +P +L S L++V Q D++ +L S A
Sbjct: 89 MVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLAL 148
Query: 114 -GGQQRRVSFAVSLIHDPKILILDEPTVGLDPV 145
GGQQ+R+ A L +P+++++DEP LDPV
Sbjct: 149 SGGQQQRLCIARVLAIEPEVILMDEPCSALDPV 181
>gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a
mitochondrial protein MTABC3 and related proteins.
MTABC3 (also known as ABCB6) is a mitochondrial
ATP-binding cassette protein involved in iron
homeostasis and one of four ABC transporters expressed
in the mitochondrial inner membrane, the other three
being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast
MDL1 (multidrug resistance-like protein 1) and MDL2
(multidrug resistance-like protein 2) transporters are
also included in this CD. MDL1 is an ATP-dependent
permease that acts as a high-copy suppressor of ATM1 and
is thought to have a role in resistance to oxidative
stress. Interestingly, subfamily B is more closely
related to the carboxyl-terminal component of subfamily
C than the two halves of ABCC molecules are with one
another.
Length = 238
Score = 47.9 bits (115), Expect = 3e-07
Identities = 44/149 (29%), Positives = 67/149 (44%), Gaps = 33/149 (22%)
Query: 19 YGLLGPSGCGKTTLLSCIVNRLRL---DHGSISLSARTVRD---------IGYMPQVGLM 66
L+G SGCGK+T++S + R G I L +RD IG + Q ++
Sbjct: 32 VALVGSSGCGKSTVVSLL---ERFYDPTSGEILLDGVDIRDLNLRWLRSQIGLVSQEPVL 88
Query: 67 RSGALLAEDSPSYLLEYYNCSTLEDVF--LYLCEQDQILFSL-------VGSESAF---G 114
G + ++ Y +T E+V + SL VG E G
Sbjct: 89 FDGTIA--ENIRYGKPD---ATDEEVEEAAKKANIHDFIMSLPDGYDTLVG-ERGSQLSG 142
Query: 115 GQQRRVSFAVSLIHDPKILILDEPTVGLD 143
GQ++R++ A +L+ +PKIL+LDE T LD
Sbjct: 143 GQKQRIAIARALLRNPKILLLDEATSALD 171
>gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding
protein. Members of this family are the ATP-binding
protein of the D-methionine ABC transporter complex.
Known members belong to the Proteobacteria.
Length = 343
Score = 48.0 bits (114), Expect = 3e-07
Identities = 46/156 (29%), Positives = 71/156 (45%), Gaps = 32/156 (20%)
Query: 17 TAYGLLGPSGCGKTTLLSCIVNRL-RLDHGSISLSARTVRDIGYMPQVGLMRSGALLAED 75
YG++G SG GK+TL+ C VN L R GS+ + + + L S A
Sbjct: 32 QIYGVIGASGAGKSTLIRC-VNLLERPTSGSVIVDGQDL--------TTLSNSELTKARR 82
Query: 76 SPSYLLEYYNCSTLEDVF--------LYLCEQDQI------LFSLVG--------SESAF 113
+ +++N + VF L +D+I L +LVG +
Sbjct: 83 QIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLS 142
Query: 114 GGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLSFS 149
GGQ++RV+ A +L +PK+L+ DE T LDP + S
Sbjct: 143 GGQKQRVAIARALASNPKVLLCDEATSALDPATTQS 178
>gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c
biogenesis, ATPase component [Posttranslational
modification, protein turnover, chaperones].
Length = 209
Score = 47.3 bits (113), Expect = 3e-07
Identities = 42/136 (30%), Positives = 59/136 (43%), Gaps = 21/136 (15%)
Query: 23 GPSGCGKTTLLSCIVNRLRLDHGSISLSA---RTVRD--------IGYMPQVGLMRSGAL 71
GP+G GKTTLL + LR D G + + VR+ +G+ Q G+ L
Sbjct: 35 GPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLYLGH--QPGIKT--EL 90
Query: 72 LAEDSPSYLLEYYNCSTLEDVF--LYLCEQDQILFSLVGSESAFGGQQRRVSFAVSLIHD 129
A ++ + ++ ++ L + VG SA GQQRRV+ A L
Sbjct: 91 TALENLHFWQRFHGSGNAATIWEALAQVGLAGLEDLPVGQLSA--GQQRRVALA-RLWLS 147
Query: 130 PKIL-ILDEPTVGLDP 144
P L ILDEP LD
Sbjct: 148 PAPLWILDEPFTALDK 163
>gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 261
Score = 47.7 bits (113), Expect = 3e-07
Identities = 41/151 (27%), Positives = 70/151 (46%), Gaps = 30/151 (19%)
Query: 20 GLLGPSGCGKTTLLSCIVNRL-------RLDHGSISLSARTVRDIGYMPQVGLMRSGALL 72
G +GPSGCGK+T+L + NR+ R + G + + V G P V G +
Sbjct: 38 GFIGPSGCGKSTVLRSL-NRMNDLVKGFRFE-GHVHFLGQDVYGKGVDPVVVRRYIGMVF 95
Query: 73 AEDSPSYLLEYYNCS------------------TLEDVFLYLCEQDQILFSLVGSESAFG 114
+ +P + + N + L+ L+ +D++ S + S G
Sbjct: 96 QQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGL---SLSG 152
Query: 115 GQQRRVSFAVSLIHDPKILILDEPTVGLDPV 145
GQQ+R+ A ++ +P++L+LDEP LDP+
Sbjct: 153 GQQQRLCIARAIATEPEVLLLDEPCSALDPI 183
>gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 275
Score = 47.8 bits (114), Expect = 3e-07
Identities = 18/32 (56%), Positives = 25/32 (78%)
Query: 114 GGQQRRVSFAVSLIHDPKILILDEPTVGLDPV 145
GGQ++RV+ A L P+I++LDEPT GLDP+
Sbjct: 140 GGQKKRVAIAGILAMKPEIIVLDEPTSGLDPM 171
>gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase
component [Amino acid transport and metabolism].
Length = 240
Score = 47.5 bits (114), Expect = 3e-07
Identities = 18/31 (58%), Positives = 24/31 (77%)
Query: 114 GGQQRRVSFAVSLIHDPKILILDEPTVGLDP 144
GGQQ+RV+ A +L DPK+++ DEPT LDP
Sbjct: 139 GGQQQRVAIARALAMDPKVMLFDEPTSALDP 169
Score = 43.3 bits (103), Expect = 9e-06
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 5/49 (10%)
Query: 21 LLGPSGCGKTTLLSCIVNRL-RLDHGSISLSARTVRDIGYMPQVGLMRS 68
++GPSG GK+TLL C+ N L D GSI++ D+G + +R
Sbjct: 33 IIGPSGSGKSTLLRCL-NGLEEPDSGSITVDG---EDVGDKKDILKLRR 77
>gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 283
Score = 47.5 bits (113), Expect = 4e-07
Identities = 18/31 (58%), Positives = 26/31 (83%)
Query: 115 GQQRRVSFAVSLIHDPKILILDEPTVGLDPV 145
GQ++RV+ A L+ +PK+L+LDEPT GLDP+
Sbjct: 145 GQKKRVAIAGVLVMEPKVLVLDEPTAGLDPM 175
>gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 252
Score = 47.3 bits (113), Expect = 4e-07
Identities = 45/162 (27%), Positives = 67/162 (41%), Gaps = 55/162 (33%)
Query: 15 GVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSAR---------------------- 52
G+T+ ++GP+G GK+TLLS + L+ D G I++
Sbjct: 28 GITS--IIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSILKQENH 85
Query: 53 -----TVRDIGYMPQVGLMR----SGALLAEDSP--SYLLEYYNCSTLEDVFLYLCEQDQ 101
TVRD+ VG R G L ED + +EY + L D +L D+
Sbjct: 86 INSRLTVRDL-----VGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYL-----DE 135
Query: 102 ILFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLD 143
+ GGQ++R A+ L D ++LDEP LD
Sbjct: 136 L----------SGGQRQRAFIAMVLAQDTDYVLLDEPLNNLD 167
>gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 259
Score = 47.2 bits (112), Expect = 4e-07
Identities = 43/157 (27%), Positives = 74/157 (47%), Gaps = 34/157 (21%)
Query: 16 VTAYGLLGPSGCGKTT------LLSCIVNRLRLDHGSISLSARTV-----------RDIG 58
VTA ++GPSGCGK+T L+ +V ++L G ++ + + ++IG
Sbjct: 40 VTA--IIGPSGCGKSTFIKTLNLMIQMVPNVKLT-GEMNYNGSNILKGKVDLVELRKNIG 96
Query: 59 YMPQVG----------LMRSGALLAEDSPSYLLEYYNCSTLEDVFLYLCEQDQILFSLVG 108
+ Q G + + + L E +L+DV L+ +D++ +
Sbjct: 97 MVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVE-KSLKDVALWDEVKDRLHTQALS 155
Query: 109 SESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPV 145
GGQQ+R+ A +L +P +L++DEPT LDPV
Sbjct: 156 LS---GGQQQRLCIARALATNPDVLLMDEPTSALDPV 189
>gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit;
Provisional.
Length = 242
Score = 46.9 bits (112), Expect = 5e-07
Identities = 17/31 (54%), Positives = 25/31 (80%)
Query: 114 GGQQRRVSFAVSLIHDPKILILDEPTVGLDP 144
GGQQ+RV+ A +L+ +P++L+ DEPT LDP
Sbjct: 144 GGQQQRVAIARALMMEPQVLLFDEPTAALDP 174
Score = 29.6 bits (67), Expect = 0.52
Identities = 10/13 (76%), Positives = 12/13 (92%)
Query: 21 LLGPSGCGKTTLL 33
LLGPSG GK++LL
Sbjct: 33 LLGPSGAGKSSLL 45
>gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 287
Score = 47.1 bits (112), Expect = 5e-07
Identities = 21/41 (51%), Positives = 28/41 (68%), Gaps = 3/41 (7%)
Query: 107 VGSESAF---GGQQRRVSFAVSLIHDPKILILDEPTVGLDP 144
+ S+S F GGQ RRV+ A + ++P+IL LDEP GLDP
Sbjct: 138 LISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDP 178
>gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the
osmoprotectant proline/glycine betaine uptake system.
This family comprises the glycine betaine/L-proline ATP
binding subunit in bacteria and its equivalents in
archaea. This transport system belong to the larger
ATP-Binding Cassette (ABC) transporter superfamily. The
characteristic feature of these transporters is the
obligatory coupling of ATP hydrolysis to substrate
translocation. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 269
Score = 47.3 bits (113), Expect = 5e-07
Identities = 45/153 (29%), Positives = 67/153 (43%), Gaps = 43/153 (28%)
Query: 21 LLGPSGCGKTTLLSCIVNRL-RLDHGSI--------SLSARTVRDI--GYMPQVGLMRSG 69
++G SG GK+TLL CI NRL G + ++S + +R++ + V +S
Sbjct: 55 IMGLSGSGKSTLLRCI-NRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMV--FQSF 111
Query: 70 ALLAEDSPSYLLEYYNCSTLEDVFLYL-----CEQDQI--------LFSLVGSESAF--- 113
ALL + + LE+V L ++ L L G E +
Sbjct: 112 ALLP-----------HRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDE 160
Query: 114 --GGQQRRVSFAVSLIHDPKILILDEPTVGLDP 144
GG Q+RV A +L DP IL++DE LDP
Sbjct: 161 LSGGMQQRVGLARALAVDPDILLMDEAFSALDP 193
>gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein;
Provisional.
Length = 264
Score = 47.1 bits (112), Expect = 5e-07
Identities = 41/152 (26%), Positives = 72/152 (47%), Gaps = 26/152 (17%)
Query: 16 VTAYGLLGPSGCGKTTLLSCIVNRL-------RLDHGSISLSARTVRDIGYMPQVGLMRS 68
+TA+ +GPSGCGK+T+L C NRL R++ G ++ + + P R
Sbjct: 38 ITAF--IGPSGCGKSTILRCF-NRLNDLIPGFRVE-GKVTFHGKNLYAPDVDPVEVRRRI 93
Query: 69 GALLAEDSPSYLLEYYNCSTLEDVFLYLCEQDQI---------LFSLVGSE------SAF 113
G + + +P Y N + + Y + D++ L+ V + S
Sbjct: 94 GMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLS 153
Query: 114 GGQQRRVSFAVSLIHDPKILILDEPTVGLDPV 145
GGQQ+R+ A ++ P+++++DEP LDP+
Sbjct: 154 GGQQQRLCIARAIAVQPEVILMDEPCSALDPI 185
>gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein.
This model describes the energy-transducing ATPase
subunit ThiQ of the ThiBPQ thiamine (and thiamine
pyrophosphate) ABC transporter in several
Proteobacteria. This protein is found so far only in
Proteobacteria, and is found in complete genomes only if
the ThiB and ThiP subunits are also found [Transport and
binding proteins, Other].
Length = 213
Score = 46.8 bits (111), Expect = 5e-07
Identities = 38/140 (27%), Positives = 62/140 (44%), Gaps = 19/140 (13%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV-------RDIGYMPQVGLMRSGALLA 73
++GPSG GK+TLL+ I + GSI ++ ++ R + + Q + + +
Sbjct: 29 IMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVR 88
Query: 74 ED-----SPSYLLEYYNCSTLEDVFLYLCEQ--DQILFSLVGSESAFGGQQRRVSFAVSL 126
++ P L + D + L L S GGQ++RV+ A L
Sbjct: 89 QNIGLGLHPGLKLNAEQQEKVVDA---AQQVGIADYLDRLPEQLS--GGQRQRVALARCL 143
Query: 127 IHDPKILILDEPTVGLDPVL 146
+ IL+LDEP LDP+L
Sbjct: 144 VRPNPILLLDEPFSALDPLL 163
>gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D.
This model describes the ATP binding subunits of nitrate
transport in bacteria and archaea. This protein belongs
to the ATP-binding cassette (ABC) superfamily. It is
thought that the two subunits encoded by ntrC and ntrD
form the binding surface for interaction with ATP. This
model is restricted in identifying ATP binding subunit
associated with the nitrate transport. Nitrate
assimilation is aided by other proteins derived from the
operon which among others include products of ntrA - a
regulatory protein; ntrB - a hydropbobic transmembrane
permease and narB - a reductase [Transport and binding
proteins, Anions, Transport and binding proteins,
Other].
Length = 230
Score = 46.7 bits (111), Expect = 6e-07
Identities = 41/149 (27%), Positives = 64/149 (42%), Gaps = 44/149 (29%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAEDSPSYL 80
L+G SGCGK+TLL+ I + G + L + + + G P +
Sbjct: 16 LIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPG------------------PDRM 57
Query: 81 LEYYNCSTL------EDVFLYL---------CEQDQIL---FSLVGSESAF--------G 114
+ + N S L E++ L + E+ I+ +LVG A G
Sbjct: 58 VVFQNYSLLPWLTVRENIALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSG 117
Query: 115 GQQRRVSFAVSLIHDPKILILDEPTVGLD 143
G ++RV+ A +L PK+L+LDEP LD
Sbjct: 118 GMKQRVAIARALSIRPKVLLLDEPFGALD 146
>gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 329
Score = 47.0 bits (111), Expect = 6e-07
Identities = 40/156 (25%), Positives = 74/156 (47%), Gaps = 32/156 (20%)
Query: 16 VTAYGLLGPSGCGKTTLLSCIVNRLRLDHGS----------ISLSARTVRDIGYMPQVGL 65
VTA+ +GPSGCGK+T L + L G+ + ++ + + ++G+
Sbjct: 110 VTAF--IGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGM 167
Query: 66 MRSGALLAE----DSPSY-----------LLEYYNCSTLEDVFLYLCEQDQILFSLVGSE 110
+ E D+ +Y +LE +L+ L+ D++ L +
Sbjct: 168 VFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALW----DEVKDDLDKAG 223
Query: 111 SAF-GGQQRRVSFAVSLIHDPKILILDEPTVGLDPV 145
+A GGQQ+R+ A ++ +P++L++DEPT LDP+
Sbjct: 224 NALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPI 259
>gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 46.9 bits (111), Expect = 6e-07
Identities = 42/165 (25%), Positives = 74/165 (44%), Gaps = 32/165 (19%)
Query: 8 SLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLR-----LDH-GSISLSARTVRD----- 56
++N I + L+GPSGCGK+T + +NR+ H G I L + D
Sbjct: 21 NVNLDIPKNSVTALIGPSGCGKSTFIR-TLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDV 79
Query: 57 IGYMPQVGLMRSGA----------------LLAEDSPSYLLEYYNCSTLEDVFLYLCEQD 100
+ +VG++ + ED ++ E S L+ L+ +D
Sbjct: 80 VELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEES-LKAAALWDEVKD 138
Query: 101 QILFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPV 145
++ S +G GGQQ+R+ A ++ P+++++DEP LDP+
Sbjct: 139 KLDKSALGLS---GGQQQRLCIARTIAVSPEVILMDEPCSALDPI 180
>gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 258
Score = 46.7 bits (111), Expect = 6e-07
Identities = 47/156 (30%), Positives = 68/156 (43%), Gaps = 40/156 (25%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISLSART--VRDIGYMPQVG---LMRSGALLAE 74
G++G SG GKTTLL CI RL D G+++ R RD+ M + L+R+
Sbjct: 36 GIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERRRLLRTEWGFVH 95
Query: 75 DSPSYLLE--------------------YYNCST-----LEDVFLYLCEQDQI--LFSLV 107
+P L Y N LE+V + L D + FS
Sbjct: 96 QNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFS-- 153
Query: 108 GSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLD 143
GG Q+R+ A +L+ P+++ +DEPT GLD
Sbjct: 154 ------GGMQQRLQIARNLVTRPRLVFMDEPTGGLD 183
>gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and
permease components [Defense mechanisms].
Length = 567
Score = 47.0 bits (112), Expect = 7e-07
Identities = 43/159 (27%), Positives = 69/159 (43%), Gaps = 26/159 (16%)
Query: 8 SLNTVIFGVTAY---GLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRD-------- 56
L + F + ++GPSG GK+TL+ ++ G I + +RD
Sbjct: 344 VLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRK 403
Query: 57 -IGYMPQVGLMRSG------ALLAEDSPSYLLEYYNCSTLEDVFL--YLCEQDQILFSLV 107
IG + Q L+ SG AL D+ +E L+ ++ ++V
Sbjct: 404 RIGIVSQDPLLFSGTIRENIALGRPDATDEEIE----EALKLANAHEFIANLPDGYDTIV 459
Query: 108 GSESAF--GGQQRRVSFAVSLIHDPKILILDEPTVGLDP 144
G GGQ++R++ A +L+ +P ILILDE T LD
Sbjct: 460 GERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDT 498
>gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 253
Score = 46.4 bits (111), Expect = 8e-07
Identities = 18/40 (45%), Positives = 27/40 (67%), Gaps = 3/40 (7%)
Query: 109 SESAF---GGQQRRVSFAVSLIHDPKILILDEPTVGLDPV 145
+SA GGQQ+R+ A +L P++L++DEPT LDP+
Sbjct: 144 HKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPI 183
Score = 44.1 bits (105), Expect = 5e-06
Identities = 17/26 (65%), Positives = 21/26 (80%), Gaps = 3/26 (11%)
Query: 16 VTAYGLLGPSGCGKTTLLSCIVNRLR 41
VTA L+GPSGCGK+TLL C+ NR+
Sbjct: 35 VTA--LIGPSGCGKSTLLRCL-NRMN 57
>gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug
resistance-like subfamily G of ATP-binding cassette
transporters. The pleiotropic drug resistance (PDR) is
a well-described phenomenon occurring in fungi and
shares several similarities with processes in bacteria
and higher eukaryotes. This PDR subfamily represents
domain I of its (ABC-IM)2 organization. ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds including
sugars, ions, peptides, and more complex organic
molecules. The nucleotide-binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 202
Score = 46.1 bits (110), Expect = 9e-07
Identities = 40/129 (31%), Positives = 59/129 (45%), Gaps = 22/129 (17%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAEDSPSYL 80
+LG G G +TLL + NR G++S+ DI Y +G E + Y
Sbjct: 38 VLGRPGSGCSTLLKALANRT---EGNVSVE----GDIHY--------NGIPYKEFAEKYP 82
Query: 81 LEYYNCSTLEDV-FLYLCEQDQILFSLVGSESAF-----GGQQRRVSFAVSLIHDPKILI 134
E S EDV F L ++ + F+L + F GG+++RVS A +L+ +L
Sbjct: 83 GEIIYVSE-EDVHFPTLTVRETLDFALRCKGNEFVRGISGGERKRVSIAEALVSRASVLC 141
Query: 135 LDEPTVGLD 143
D T GLD
Sbjct: 142 WDNSTRGLD 150
>gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 274
Score = 46.5 bits (110), Expect = 9e-07
Identities = 39/153 (25%), Positives = 65/153 (42%), Gaps = 32/153 (20%)
Query: 21 LLGPSGCGKTTLLSCIVNRL-----------RLDHGSISLSARTVRDIGYMPQVGLMRSG 69
+GPSGCGK+TLL C NR+ RL + ++ + + QVG+
Sbjct: 51 FIGPSGCGKSTLLRCF-NRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGM---- 105
Query: 70 ALLAEDSPSYLLEYYNCS--------------TLEDVFLYLCEQDQILFSLVGSESAF-G 114
+ +P Y N + +ED +++ L +A G
Sbjct: 106 -VFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSG 164
Query: 115 GQQRRVSFAVSLIHDPKILILDEPTVGLDPVLS 147
GQQ+R+ A ++ P +L++DEP LDP+ +
Sbjct: 165 GQQQRLCIARAIAMKPDVLLMDEPCSALDPIST 197
>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular
activities. AAA - ATPases associated with a variety of
cellular activities. This profile/alignment only detects
a fraction of this vast family. The poorly conserved
N-terminal helix is missing from the alignment.
Length = 148
Score = 45.1 bits (106), Expect = 1e-06
Identities = 24/129 (18%), Positives = 38/129 (29%), Gaps = 37/129 (28%)
Query: 19 YGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAEDSPS 78
++GP G GKTTL + L G +
Sbjct: 5 ILIVGPPGSGKTTLARALARELGPPGGGV------------------------------- 33
Query: 79 YLLEYYNCSTLEDVFLYLCEQDQILFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEP 138
Y + + + L + G + R++ A++ P +LILDE
Sbjct: 34 ---IYIDGEDILEEVLDQLLLIIVGGKKASGS---GELRLRLALALARKLKPDVLILDEI 87
Query: 139 TVGLDPVLS 147
T LD
Sbjct: 88 TSLLDAEQE 96
>gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 257
Score = 45.8 bits (108), Expect = 1e-06
Identities = 45/170 (26%), Positives = 78/170 (45%), Gaps = 29/170 (17%)
Query: 1 MADVSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRL-RLDHGSISLSARTV---RD 56
+ D++ N IFG+ +GPSG GK+TLL ++NRL + I + + + +D
Sbjct: 26 LKDITIKIPNNSIFGI-----MGPSGSGKSTLLK-VLNRLIEIYDSKIKVDGKVLYFGKD 79
Query: 57 IGYMPQVGLMRS-GALLAEDSPSYLLEYYNC-----------------STLEDVFLYLCE 98
I + + L + G + + +P L Y+ +E+ +
Sbjct: 80 IFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGL 139
Query: 99 QDQILFSLVGSESAF-GGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLS 147
++ L S GGQQ+R++ A +L PK+L++DEPT +D V S
Sbjct: 140 WKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNS 189
>gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system,
duplicated ATPase component [General function prediction
only].
Length = 534
Score = 46.1 bits (110), Expect = 1e-06
Identities = 16/30 (53%), Positives = 23/30 (76%)
Query: 114 GGQQRRVSFAVSLIHDPKILILDEPTVGLD 143
GGQ++RV A++L ++P +LI DEPT LD
Sbjct: 160 GGQRQRVMIAMALANEPDLLIADEPTTALD 189
Score = 40.3 bits (95), Expect = 1e-04
Identities = 15/30 (50%), Positives = 24/30 (80%)
Query: 114 GGQQRRVSFAVSLIHDPKILILDEPTVGLD 143
GGQ++R++ A +LI P++++LDEPT LD
Sbjct: 429 GGQRQRIAIARALILKPELILLDEPTSALD 458
Score = 26.9 bits (60), Expect = 4.3
Identities = 9/13 (69%), Positives = 11/13 (84%)
Query: 20 GLLGPSGCGKTTL 32
GL+G SG GK+TL
Sbjct: 317 GLVGESGSGKSTL 329
>gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 46.0 bits (109), Expect = 1e-06
Identities = 47/171 (27%), Positives = 73/171 (42%), Gaps = 61/171 (35%)
Query: 16 VTAYGLLGPSGCGKTTLLSCIVNRL-----------RLDHGSISLSARTV---------- 54
VTA +GPSGCGK+T L C NR+ LD I + +
Sbjct: 33 VTA--FIGPSGCGKSTFLRCF-NRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVG 89
Query: 55 --------------RDIGYMPQV-GLMRSGALLAEDSPSYLLEYYNCSTLEDVFLY--LC 97
++ Y P++ GL ++ L E ++E +L V L+ L
Sbjct: 90 MVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDE-----IVE----KSLTSVGLWEELG 140
Query: 98 EQDQILFSLVGSESAF---GGQQRRVSFAVSLIHDPKILILDEPTVGLDPV 145
++ + +SAF GGQQ+R+ A ++ P +L++DEP LDPV
Sbjct: 141 DRLK--------DSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPV 183
>gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein.
This protein is related to a Proteobacterial ATP
transporter that exports lipid A and to eukaryotic
P-glycoproteins.
Length = 576
Score = 46.2 bits (110), Expect = 1e-06
Identities = 35/146 (23%), Positives = 61/146 (41%), Gaps = 31/146 (21%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAEDSPSYL 80
L+GPSG GK+TL ++ G I L +R + P L AL+ +D
Sbjct: 371 LVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLD--PAE-LRARMALVPQDPV--- 424
Query: 81 LEYYNCSTLEDVFL---------------------YLCEQDQILFSLVGSE--SAFGGQQ 117
+ S +E++ ++ + + +G + GGQ+
Sbjct: 425 --LFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQR 482
Query: 118 RRVSFAVSLIHDPKILILDEPTVGLD 143
+R++ A +++ D IL+LDE T LD
Sbjct: 483 QRIAIARAILKDAPILLLDEATSALD 508
>gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain
of the thiamine transport system. Part of the
binding-protein-dependent transport system tbpA-thiPQ
for thiamine and TPP. Probably responsible for the
translocation of thiamine across the membrane. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 211
Score = 45.6 bits (108), Expect = 1e-06
Identities = 40/150 (26%), Positives = 60/150 (40%), Gaps = 39/150 (26%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAEDSPSYL 80
++GPSG GK+TLL+ I G + ++ D+ P A+ S L
Sbjct: 29 IVGPSGSGKSTLLNLIAGFETPQSGRVLINGV---DVTAAPP----------ADRPVSML 75
Query: 81 LEYYNCSTLEDVF----------LYLCEQDQ--------------ILFSLVGSESAFGGQ 116
+ N V L L +D+ + L G S GG+
Sbjct: 76 FQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELS--GGE 133
Query: 117 QRRVSFAVSLIHDPKILILDEPTVGLDPVL 146
++RV+ A L+ D +L+LDEP LDP L
Sbjct: 134 RQRVALARVLVRDKPVLLLDEPFAALDPAL 163
>gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component
[Amino acid transport and metabolism].
Length = 242
Score = 45.6 bits (108), Expect = 1e-06
Identities = 17/31 (54%), Positives = 25/31 (80%)
Query: 114 GGQQRRVSFAVSLIHDPKILILDEPTVGLDP 144
GGQQ+RV+ A +L+ +P++L+ DEPT LDP
Sbjct: 144 GGQQQRVAIARALMMEPQVLLFDEPTAALDP 174
>gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system,
ATPase component [Amino acid transport and metabolism].
Length = 386
Score = 46.2 bits (110), Expect = 1e-06
Identities = 43/147 (29%), Positives = 69/147 (46%), Gaps = 31/147 (21%)
Query: 21 LLGPSGCGKTTLLSCIVNRL-RLDHGSI--------SLSARTVRDIGYMPQVGLM-RSGA 70
++G SG GK+TL+ + NRL G I LSA +R++ ++ ++ +S A
Sbjct: 59 IMGLSGSGKSTLVRLL-NRLIEPTRGEILVDGKDIAKLSAAELREL-RRKKISMVFQSFA 116
Query: 71 LL----AEDSPSYLLEYYNCSTLEDVFLYLCEQ---DQI-LFSLVGSESAF-----GGQQ 117
LL ++ ++ LE E E+ + + L L G + GG Q
Sbjct: 117 LLPHRTVLENVAFGLEVQGVPKAE------REERALEALELVGLEGYADKYPNELSGGMQ 170
Query: 118 RRVSFAVSLIHDPKILILDEPTVGLDP 144
+RV A +L +DP IL++DE LDP
Sbjct: 171 QRVGLARALANDPDILLMDEAFSALDP 197
>gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 259
Score = 45.8 bits (109), Expect = 1e-06
Identities = 42/163 (25%), Positives = 60/163 (36%), Gaps = 57/163 (34%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISLSAR--------------------------- 52
+LGP+G GK+TLL + L D G ++L+
Sbjct: 31 AILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPF 90
Query: 53 TVRDI---GYMPQVGLMRSGALLAEDS--PSYLLEYYNCSTLEDVFLYLCEQDQILFSLV 107
TV+++ G +P RSG ED + L + S L +D S
Sbjct: 91 TVQEVVQMGRIPH----RSGREPEEDERIAAQALAATDLSGLA-------GRDYRTLS-- 137
Query: 108 GSESAFGGQQRRVSFAVSL------IHDPKILILDEPTVGLDP 144
GG+Q+RV A L + + L LDEPT LD
Sbjct: 138 ------GGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDI 174
>gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine
transporter. PotA is an ABC-type transporter and the
ATPase component of the
spermidine/putrescine-preferential uptake system
consisting of PotA, -B, -C, and -D. PotA has two domains
with the N-terminal domain containing the ATPase
activity and the residues required for homodimerization
with PotA and heterdimerization with PotB. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 232
Score = 45.7 bits (109), Expect = 2e-06
Identities = 43/154 (27%), Positives = 61/154 (39%), Gaps = 49/154 (31%)
Query: 19 YGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIG-YMPQVGLMRSGALLAEDSP 77
+ LLGPSGCGKTTLL I G I L + + ++ + V +
Sbjct: 29 FTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVFQ--------- 79
Query: 78 SYLLEYYNCSTLEDVFLYLCEQDQILF--------------------SLVGSE------- 110
+Y L F +L + I F LV E
Sbjct: 80 NYAL-----------FPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKP 128
Query: 111 SAFGGQQR-RVSFAVSLIHDPKILILDEPTVGLD 143
S G Q+ RV+ A +L+++PK+L+LDEP LD
Sbjct: 129 SQLSGGQQQRVAIARALVNEPKVLLLDEPLGALD 162
>gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding
protein ModF; Provisional.
Length = 490
Score = 45.8 bits (109), Expect = 2e-06
Identities = 46/161 (28%), Positives = 67/161 (41%), Gaps = 52/161 (32%)
Query: 21 LLGPSGCGKTTLLSCIV--------NRLRLDHGSISLSARTVRDI----GYMPQVGLMRS 68
++GP+G GK+TLLS I N L L G S T+ DI GY+
Sbjct: 291 IVGPNGAGKSTLLSLITGDHPQGYSNDLTL-FGRRRGSGETIWDIKKHIGYV-------- 341
Query: 69 GALLAEDSPSYLLEYYNCSTLEDVFL---------Y--LCEQDQIL----FSLVGSESAF 113
S S L+Y +++ +V L Y + ++ Q L ++G +
Sbjct: 342 -------SSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRT 394
Query: 114 G---------GQQRRVSFAVSLIHDPKILILDEPTVGLDPV 145
GQQR +L+ P +LILDEP GLDP+
Sbjct: 395 ADAPFHSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPL 435
Score = 32.7 bits (75), Expect = 0.063
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 115 GQQRRVSFAVSLIHDPKILILDEPTVGLD 143
G+ R+ +L+ +P +LILDEP GLD
Sbjct: 139 GETRKTLLCQALMSEPDLLILDEPFDGLD 167
>gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor
regulator (CFTR). The model describes the cystis
fibrosis transmembrane conductor regulator (CFTR) in
eukaryotes. The principal role of this protein is
chloride ion conductance. The protein is predicted to
consist of 12 transmembrane domains. Mutations or
lesions in the genetic loci have been linked to the
aetiology of asthma, bronchiectasis, chronic obstructive
pulmonary disease etc. Disease-causing mutations have
been studied by 36Cl efflux assays in vitro cell
cultures and electrophysiology, all of which point to
the impairment of chloride channel stability and not the
biosynthetic processing per se [Transport and binding
proteins, Anions].
Length = 1490
Score = 46.1 bits (109), Expect = 2e-06
Identities = 38/128 (29%), Positives = 57/128 (44%), Gaps = 13/128 (10%)
Query: 23 GPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGAL-------LAED 75
G +G GK++LL I+ L G I S R I + PQ + G + L+ D
Sbjct: 459 GSTGSGKSSLLMMIMGELEPSEGKIKHSGR----ISFSPQTSWIMPGTIKDNIIFGLSYD 514
Query: 76 SPSYLLEYYNCSTLEDVFLYLCEQDQILFSLVGSESAFGGQQRRVSFAVSLIHDPKILIL 135
Y C ED+ L E+D+ + G + GGQ+ R+S A ++ D + +L
Sbjct: 515 EYRYTSVIKACQLEEDIAL-FPEKDKTVL-GEGGITLSGGQRARISLARAVYKDADLYLL 572
Query: 136 DEPTVGLD 143
D P LD
Sbjct: 573 DSPFTHLD 580
Score = 45.3 bits (107), Expect = 4e-06
Identities = 49/143 (34%), Positives = 72/143 (50%), Gaps = 21/143 (14%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSI--------SLSARTVRD-IGYMPQVGLMRSGA 70
GLLG +G GK+TLLS ++ RL G I S++ +T R G +PQ + SG
Sbjct: 1249 GLLGRTGSGKSTLLSALL-RLLSTEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGT 1307
Query: 71 LLAEDSPSYLLEYYNCSTL----EDVFL-YLCEQ--DQILFSLV-GSESAFGGQQRRVSF 122
P E ++ + E+V L + EQ D++ F LV G G ++ +
Sbjct: 1308 FRKNLDPY---EQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCL 1364
Query: 123 AVSLIHDPKILILDEPTVGLDPV 145
A S++ KIL+LDEP+ LDPV
Sbjct: 1365 ARSILSKAKILLLDEPSAHLDPV 1387
>gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1);
Provisional.
Length = 1466
Score = 46.2 bits (109), Expect = 2e-06
Identities = 22/41 (53%), Positives = 31/41 (75%), Gaps = 2/41 (4%)
Query: 105 SLVGSESA--FGGQQRRVSFAVSLIHDPKILILDEPTVGLD 143
+LVGS ++ GGQ++R+S A ++I +PKILILDE T LD
Sbjct: 571 TLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLD 611
Score = 41.6 bits (97), Expect = 7e-05
Identities = 17/34 (50%), Positives = 26/34 (76%)
Query: 110 ESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLD 143
+S GGQ++R++ A +L+ +PKIL+LDE T LD
Sbjct: 1357 KSLSGGQKQRIAIARALLREPKILLLDEATSSLD 1390
Score = 28.8 bits (64), Expect = 1.1
Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 6/78 (7%)
Query: 19 YGLLGPSGCGKTTLLSCIVNRLRLDHGSISLS-ARTVRDIG---YMPQVGLMRSGALLAE 74
Y +G SGCGK+T+L I G I ++ + ++DI + ++G++ LL
Sbjct: 414 YAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFS 473
Query: 75 DSPSYLLEY--YNCSTLE 90
+S ++Y Y+ LE
Sbjct: 474 NSIKNNIKYSLYSLKDLE 491
>gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter
Associated with Antigen Processing, subfamily C. TAP
(Transporter Associated with Antigen Processing) is
essential for peptide delivery from the cytosol into the
lumen of the endoplasmic reticulum (ER), where these
peptides are loaded on major histocompatibility complex
(MHC) I molecules. Loaded MHC I leave the ER and display
their antigenic cargo on the cell surface to cytotoxic T
cells. Subsequently, virus-infected or malignantly
transformed cells can be eliminated. TAP belongs to the
large family of ATP-binding cassette (ABC) transporters,
which translocate a vast variety of solutes across
membranes.
Length = 226
Score = 45.5 bits (108), Expect = 2e-06
Identities = 46/160 (28%), Positives = 69/160 (43%), Gaps = 51/160 (31%)
Query: 16 VTAYGLLGPSGCGKTTLLSCIVN-------RLRLD------------HGSIS-------L 49
VTA L+GPSG GK+T+++ + N ++ LD H +S L
Sbjct: 42 VTA--LVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVL 99
Query: 50 SARTVRD-IGY-MPQVGLMRSGALL----AEDSPSYLLEYYNCSTLEDVFLYLCEQDQIL 103
AR+++D I Y + A S L Y+ E
Sbjct: 100 FARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEK------------ 147
Query: 104 FSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLD 143
GS+ + GGQ++RV+ A +LI +P++LILDE T LD
Sbjct: 148 ----GSQLS-GGQKQRVAIARALIRNPQVLILDEATSALD 182
>gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional.
Length = 258
Score = 45.5 bits (109), Expect = 2e-06
Identities = 45/161 (27%), Positives = 60/161 (37%), Gaps = 49/161 (30%)
Query: 16 VTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDI---------GYMPQV--- 63
V A +LGP+G GK+TLL + L D G + L+ R + D +PQ
Sbjct: 30 VVA--ILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVLPQHSSL 87
Query: 64 ------------GLMRSGALLAEDS--PSYLLEYYNCSTLEDVFLYLCEQDQILFSLVGS 109
G G AED + L + + L Y L S
Sbjct: 88 SFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRD-YP--------QL--S 136
Query: 110 ESAFGGQQRRVSFAVSLI------HDPKILILDEPTVGLDP 144
GG+Q+RV A L P+ L+LDEPT LD
Sbjct: 137 ----GGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDL 173
>gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit;
Provisional.
Length = 353
Score = 45.5 bits (108), Expect = 2e-06
Identities = 47/145 (32%), Positives = 66/145 (45%), Gaps = 31/145 (21%)
Query: 21 LLGPSGCGKTTLLSCIVN-------RLRLDHGSIS-LSARTVRDIGYMPQ-VGLMRS--- 68
LLGPSG GKTTLL I +R +S L AR R +G++ Q L R
Sbjct: 33 LLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARD-RKVGFVFQHYALFRHMTV 91
Query: 69 --------GALLAEDSPS-YLLEYYNCSTLEDVFL-YLCEQDQILFSLVGSESAFGGQQR 118
L + P+ ++ LE V L +L ++ S GGQ++
Sbjct: 92 FDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLS--------GGQKQ 143
Query: 119 RVSFAVSLIHDPKILILDEPTVGLD 143
RV+ A +L +P+IL+LDEP LD
Sbjct: 144 RVALARALAVEPQILLLDEPFGALD 168
>gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system,
ATP-binding component PhnT. This ATP-binding component
of an ABC transport system is found in Salmonella and
Burkholderia lineages in the vicinity of enzymes for the
breakdown of 2-aminoethylphosphonate.
Length = 362
Score = 45.4 bits (107), Expect = 2e-06
Identities = 43/141 (30%), Positives = 62/141 (43%), Gaps = 25/141 (17%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAEDSPSYL 80
L+G SGCGKTTLL I ++ G A RD+ + P R ALL ++ Y
Sbjct: 36 LIGKSGCGKTTLLRAIAGFVKAA-GLTGRIAIADRDLTHAPP--HKRGLALLFQN---YA 89
Query: 81 LEYYNCSTLEDVFLYLCEQDQI----------LFSLVGSESA--------FGGQQRRVSF 122
L + + ++V L Q LVG A GG Q+R++
Sbjct: 90 L-FPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAI 148
Query: 123 AVSLIHDPKILILDEPTVGLD 143
A ++ +P +L+LDEP LD
Sbjct: 149 ARAIAIEPDVLLLDEPLSALD 169
>gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic
fibrosis transmembrane regulator, subfamily C. The CFTR
subfamily domain 1. The cystic fibrosis transmembrane
regulator (CFTR), the product of the gene mutated in
patients with cystic fibrosis, has adapted the ABC
transporter structural motif to form a tightly regulated
anion channel at the apical surface of many epithelia.
Use of the term assembly of a functional ion channel
implies the coming together of subunits, or at least
smaller not-yet functional components of the active
whole. In fact, on the basis of current knowledge only
the CFTR polypeptide itself is required to form an ATP-
and protein kinase A-dependent low-conductance chloride
channel of the type present in the apical membrane of
many epithelial cells. CFTR displays the typical
organization (IM-ABC)2 and carries a characteristic
hydrophilic R-domain that separates IM1-ABC1 from
IM2-ABC2.
Length = 282
Score = 44.8 bits (106), Expect = 3e-06
Identities = 36/128 (28%), Positives = 54/128 (42%), Gaps = 13/128 (10%)
Query: 23 GPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGAL-------LAED 75
G +G GKT+LL I+ L G I S R I + Q + G + ++ D
Sbjct: 70 GSTGSGKTSLLMLILGELEPSEGKIKHSGR----ISFSSQFSWIMPGTIKENIIFGVSYD 125
Query: 76 SPSYLLEYYNCSTLEDVFLYLCEQDQILFSLVGSESAFGGQQRRVSFAVSLIHDPKILIL 135
Y C ED+ E+D + G + GGQ+ R+S A ++ D + +L
Sbjct: 126 EYRYKSVVKACQLEEDI-TKFPEKDNTVLG-EGGITLSGGQRARISLARAVYKDADLYLL 183
Query: 136 DEPTVGLD 143
D P LD
Sbjct: 184 DSPFGYLD 191
>gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional.
Length = 248
Score = 44.9 bits (107), Expect = 3e-06
Identities = 39/143 (27%), Positives = 59/143 (41%), Gaps = 24/143 (16%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAE-DSPSY 79
L+GP+G GK+TLL+ + L GSI + + + L R A L++ +P +
Sbjct: 27 LVGPNGAGKSTLLARMAGLLPGS-GSIQFAGQPLEA---WSAAELARHRAYLSQQQTPPF 82
Query: 80 LLEYYNCSTL-----------EDVFLYLCEQDQILFSLVGSESAF-GGQQRRVSFA-VSL 126
+ + TL + E + L S + GG+ +RV A V L
Sbjct: 83 AMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVL 142
Query: 127 IHDPKI------LILDEPTVGLD 143
P I L+LDEP LD
Sbjct: 143 QVWPDINPAGQLLLLDEPMNSLD 165
>gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed.
Length = 251
Score = 44.7 bits (106), Expect = 3e-06
Identities = 39/137 (28%), Positives = 63/137 (45%), Gaps = 33/137 (24%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQ-----------VG---LM 66
LLGP+G GK+TL+ ++ + D G I + + IGY+PQ V +
Sbjct: 35 LLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKL--RIGYVPQKLYLDTTLPLTVNRFLRL 92
Query: 67 RSGALLAEDSPSYLLEYYNCSTLEDVFLYLCEQDQILFSLVGSESAFGGQQRRVSFAVSL 126
R G + P+ L+ L D + + GG+ +RV A +L
Sbjct: 93 RPGTKKEDILPA--LKRVQAGHLIDAPM---------------QKLSGGETQRVLLARAL 135
Query: 127 IHDPKILILDEPTVGLD 143
++ P++L+LDEPT G+D
Sbjct: 136 LNRPQLLVLDEPTQGVD 152
>gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein;
Provisional.
Length = 352
Score = 44.9 bits (107), Expect = 3e-06
Identities = 44/157 (28%), Positives = 71/157 (45%), Gaps = 49/157 (31%)
Query: 15 GVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV-------------RDIGYMP 61
G+TA + G SG GKT+L++ I R G I L+ R + R IGY+
Sbjct: 25 GITA--IFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVF 82
Query: 62 QVGLMRSGALLAEDS---PSYLLE---YYNCS-TLEDVFLYLCEQDQILFSLVGSE---- 110
Q D+ P Y + Y + ++ F D+I+ +L+G E
Sbjct: 83 Q------------DARLFPHYKVRGNLRYGMAKSMVAQF------DKIV-ALLGIEPLLD 123
Query: 111 ----SAFGGQQRRVSFAVSLIHDPKILILDEPTVGLD 143
S GG+++RV+ +L+ P++L++DEP LD
Sbjct: 124 RYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLD 160
>gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter
subunit; Provisional.
Length = 262
Score = 44.6 bits (105), Expect = 3e-06
Identities = 44/151 (29%), Positives = 64/151 (42%), Gaps = 27/151 (17%)
Query: 21 LLGPSGCGKTTLL---SCIVNRLRLDHGSISLSARTV-------RDI-------GYM-PQ 62
LLGPSG GK+TLL S ++ + I L RTV RDI GY+ Q
Sbjct: 35 LLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQ 94
Query: 63 VGLMRS---------GALLAEDSPSYLLEYYNCSTLEDVFLYLCEQDQILFSLVGSESAF 113
L+ GAL + ++ + L + F+ +
Sbjct: 95 FNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLS 154
Query: 114 GGQQRRVSFAVSLIHDPKILILDEPTVGLDP 144
GGQQ+RV+ A +L+ K+++ DEP LDP
Sbjct: 155 GGQQQRVAIARALMQQAKVILADEPIASLDP 185
>gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 204
Score = 44.4 bits (106), Expect = 3e-06
Identities = 38/141 (26%), Positives = 56/141 (39%), Gaps = 33/141 (23%)
Query: 23 GPSGCGKTTLLSCIVNRLRLDHGSISL---SARTVRD--------IGYMPQVGLMRSGAL 71
GP+G GKT+LL + R D G + R RD +G+ P + L
Sbjct: 34 GPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYLGHQPGI----KTEL 89
Query: 72 LAEDSPSYLLEYYNCSTLEDVFLYLCEQDQIL--FSLVGSE-------SAFGGQQRRVSF 122
A ++ + + E ++ + L L G E SA GQQRRV+
Sbjct: 90 TALENLRFYQRLHGPGDDEALW-------EALAQVGLAGFEDVPVRQLSA--GQQRRVAL 140
Query: 123 AVSLIHDPKILILDEPTVGLD 143
A + + ILDEP +D
Sbjct: 141 ARLWLTRAPLWILDEPFTAID 161
>gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 213
Score = 44.4 bits (105), Expect = 4e-06
Identities = 45/160 (28%), Positives = 66/160 (41%), Gaps = 57/160 (35%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLD---HGSISLSARTVRDIGYMP----QVGLMRSGALLA 73
L+GPSGCGK+TLLS ++ L G + L+ + + +P Q+G++ ALL
Sbjct: 33 LMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQ---RLDMLPAAQRQIGILFQDALL- 88
Query: 74 EDSPSYLLEYYNCSTLEDVFLYLCEQDQILFSL-------------------VGSESAF- 113
F +L +LF+L G + AF
Sbjct: 89 -------------------FPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFH 129
Query: 114 -------GGQQRRVSFAVSLIHDPKILILDEPTVGLDPVL 146
GGQ+ RV+ +L+ PK L+LDEP LD L
Sbjct: 130 QDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVAL 169
>gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein;
Reviewed.
Length = 240
Score = 44.3 bits (105), Expect = 4e-06
Identities = 18/33 (54%), Positives = 24/33 (72%)
Query: 114 GGQQRRVSFAVSLIHDPKILILDEPTVGLDPVL 146
GGQQ+RV+ A +L PK+++ DEPT LDP L
Sbjct: 139 GGQQQRVAIARALAVKPKLMLFDEPTSALDPEL 171
>gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 269
Score = 44.4 bits (105), Expect = 4e-06
Identities = 48/152 (31%), Positives = 76/152 (50%), Gaps = 26/152 (17%)
Query: 16 VTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIG---YMPQVGLM----RS 68
VTA L+GPSGCGK+T+L + NR+ SL R + D G Y P+V + R
Sbjct: 41 VTA--LIGPSGCGKSTVLRSL-NRMNDLIEGCSLKGRVLFD-GTDLYDPRVDPVEVRRRI 96
Query: 69 GALLAEDSPSYLLEYYNCSTLEDVFLYLCEQDQIL-FSL----VGSE----------SAF 113
G + + +P Y N + + Y + D+++ SL V E S
Sbjct: 97 GMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLS 156
Query: 114 GGQQRRVSFAVSLIHDPKILILDEPTVGLDPV 145
GGQQ+R+ A ++ +P+++++DEP LDP+
Sbjct: 157 GGQQQRLCIARTIAIEPEVILMDEPCSALDPI 188
>gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 277
Score = 44.4 bits (105), Expect = 5e-06
Identities = 16/31 (51%), Positives = 25/31 (80%)
Query: 114 GGQQRRVSFAVSLIHDPKILILDEPTVGLDP 144
GG+++RV+ A + +P++L+LDEPT GLDP
Sbjct: 140 GGEKKRVAIAGVIAMEPQVLVLDEPTAGLDP 170
>gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 254
Score = 44.3 bits (104), Expect = 5e-06
Identities = 42/167 (25%), Positives = 74/167 (44%), Gaps = 34/167 (20%)
Query: 7 SSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV---RDIGYMPQV 63
+++N I + L+GPSGCGK+T L + NR+ I + + ++I Y
Sbjct: 24 NNINIKILKNSITALIGPSGCGKSTFLRTL-NRMNDLVEGIKIEGNVIYEGKNI-YSNNF 81
Query: 64 GLM----RSGALLAEDSPSYLLEYYNCS------------TLEDVFLYLCEQDQILFSL- 106
++ + G + +P + Y N S L+++ EQ +L
Sbjct: 82 DILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEI----VEQSLKKSALW 137
Query: 107 --------VGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPV 145
+ S GGQQ+R+ A +L +P ++++DEPT LDP+
Sbjct: 138 NEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPI 184
>gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding
protein. This model represents the ATP-binding protein
of a family of ABC transporters for inorganic phosphate.
In the model species Escherichia coli, a constitutive
transporter for inorganic phosphate, with low affinity,
is also present. The high affinity transporter that
includes this polypeptide is induced when extracellular
phosphate concentrations are low. The proteins most
similar to the members of this family but not included
appear to be amino acid transporters [Transport and
binding proteins, Anions].
Length = 247
Score = 43.8 bits (104), Expect = 6e-06
Identities = 19/40 (47%), Positives = 28/40 (70%), Gaps = 3/40 (7%)
Query: 109 SESAF---GGQQRRVSFAVSLIHDPKILILDEPTVGLDPV 145
+SA GGQQ+R+ A +L +P++L+LDEPT LDP+
Sbjct: 139 HDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPI 178
Score = 39.2 bits (92), Expect = 2e-04
Identities = 16/25 (64%), Positives = 20/25 (80%), Gaps = 3/25 (12%)
Query: 16 VTAYGLLGPSGCGKTTLLSCIVNRL 40
VTA L+GPSGCGK+TLL + NR+
Sbjct: 29 VTA--LIGPSGCGKSTLLRSL-NRM 50
>gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 286
Score = 43.7 bits (103), Expect = 7e-06
Identities = 18/31 (58%), Positives = 24/31 (77%)
Query: 114 GGQQRRVSFAVSLIHDPKILILDEPTVGLDP 144
GGQQ+R+ A +L +P+IL+LDEPT LDP
Sbjct: 185 GGQQQRLCVARTLAVEPEILLLDEPTSALDP 215
Score = 31.8 bits (72), Expect = 0.11
Identities = 15/25 (60%), Positives = 19/25 (76%), Gaps = 3/25 (12%)
Query: 16 VTAYGLLGPSGCGKTTLLSCIVNRL 40
VTA ++GPSGCGK+T L I NR+
Sbjct: 67 VTA--IIGPSGCGKSTFLRAI-NRM 88
>gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of
CFTR,subfamily C. The cystic fibrosis transmembrane
regulator (CFTR), the product of the gene mutated in
patients with cystic fibrosis, has adapted the ABC
transporter structural motif to form a tightly regulated
anion channel at the apical surface of many epithelia.
Use of the term assembly of a functional ion channel
implies the coming together of subunits or at least
smaller not-yet functional components of the active
whole. In fact, on the basis of current knowledge only
the CFTR polypeptide itself is required to form an ATP-
and protein kinase A-dependent low-conductance chloride
channel of the type present in the apical membrane of
many epithelial cells. CFTR displays the typical
organization (IM-ABC)2 and carries a characteristic
hydrophilic R-domain that separates IM1-ABC1 from
IM2-ABC2.
Length = 275
Score = 43.7 bits (103), Expect = 7e-06
Identities = 44/146 (30%), Positives = 67/146 (45%), Gaps = 27/146 (18%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISL---SARTV------RDIGYMPQVGLMRSGA 70
GLLG +G GK+TLLS + L + G I + S +V + G +PQ + SG
Sbjct: 34 GLLGRTGSGKSTLLSAFLRLLNTE-GDIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGT 92
Query: 71 LLAEDSPSYLLEYYNCSTLEDVFLY--------LCEQ--DQILFSLV-GSESAFGGQQRR 119
P Y + E+++ + EQ Q+ F LV G G ++
Sbjct: 93 FRKNLDP------YGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQL 146
Query: 120 VSFAVSLIHDPKILILDEPTVGLDPV 145
+ A S++ KIL+LDEP+ LDP+
Sbjct: 147 MCLARSVLSKAKILLLDEPSAHLDPI 172
>gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit;
Provisional.
Length = 257
Score = 43.5 bits (103), Expect = 9e-06
Identities = 17/30 (56%), Positives = 23/30 (76%)
Query: 114 GGQQRRVSFAVSLIHDPKILILDEPTVGLD 143
GGQ++RV+ A +LIH P +L+LDEP LD
Sbjct: 136 GGQKQRVALARALIHRPGLLLLDEPLGALD 165
>gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1,
subfamily C. Domain 2 of NFT1 (New full-length MRP-type
transporter 1). NFT1 belongs to the MRP (multidrug
resistance-associated protein) family of ABC
transporters. Some of the MRP members have five
additional transmembrane segments in their N-terminus,
but the function of these additional membrane-spanning
domains is not clear. The MRP was found in the
multidrug-resisting lung cancer cell in which
p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions such as
glutathione, glucuronate, and sulfate.
Length = 207
Score = 43.2 bits (102), Expect = 1e-05
Identities = 37/145 (25%), Positives = 68/145 (46%), Gaps = 21/145 (14%)
Query: 9 LNTVIFGVTA---YGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGL 65
L V F V A G++G +G GK+TL+ + L + G I + DI +P L
Sbjct: 24 LKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGI---DISTIPLEDL 80
Query: 66 MRSGALLAEDSPSYL-------LEYYNCSTLEDVFLYLCEQDQILFSLVGSESAFGGQQR 118
S ++ +D P+ L+ ++ + E+++ L + G + GQ++
Sbjct: 81 RSSLTIIPQD-PTLFSGTIRSNLDPFDEYSDEEIYGALRVSE-------GGLNLSQGQRQ 132
Query: 119 RVSFAVSLIHDPKILILDEPTVGLD 143
+ A +L+ P++L+LDE T +D
Sbjct: 133 LLCLARALLKRPRVLVLDEATASID 157
>gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein;
Provisional.
Length = 267
Score = 43.2 bits (102), Expect = 1e-05
Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
Query: 110 ESAF---GGQQRRVSFAVSLIHDPKILILDEPTVGLDPV 145
+SA GGQQ+R+ A ++ P IL++DEP LDP+
Sbjct: 159 KSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPI 197
Score = 32.4 bits (74), Expect = 0.065
Identities = 13/25 (52%), Positives = 18/25 (72%), Gaps = 3/25 (12%)
Query: 16 VTAYGLLGPSGCGKTTLLSCIVNRL 40
+TA L+GPSG GK+T L + NR+
Sbjct: 48 ITA--LIGPSGSGKSTYLRSL-NRM 69
>gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase
protein; Reviewed.
Length = 375
Score = 43.4 bits (103), Expect = 1e-05
Identities = 17/37 (45%), Positives = 21/37 (56%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDI 57
LLGPSGCGKTT+L I D G I L + + +
Sbjct: 45 LLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHV 81
Score = 41.5 bits (98), Expect = 5e-05
Identities = 15/30 (50%), Positives = 23/30 (76%)
Query: 114 GGQQRRVSFAVSLIHDPKILILDEPTVGLD 143
GGQQ+RV+ A ++++ PK+L+LDE LD
Sbjct: 147 GGQQQRVAIARAVVNKPKVLLLDESLSALD 176
>gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding
subunit; Provisional.
Length = 237
Score = 42.9 bits (101), Expect = 1e-05
Identities = 40/147 (27%), Positives = 68/147 (46%), Gaps = 31/147 (21%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSG-ALLAEDSPSY 79
L+G +G GKTTLL + R G I + DI +MR A++ E
Sbjct: 36 LIGANGAGKTTLLGTLCGDPRATSGRIVFDGK---DITDWQTAKIMREAVAIVPEGR--- 89
Query: 80 LLEYYNCSTLEDVFL---YLCEQDQI---------LFSLV--------GSESAFGGQQRR 119
++ T+E+ + E+DQ LF + G+ S GG+Q+
Sbjct: 90 --RVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMS--GGEQQM 145
Query: 120 VSFAVSLIHDPKILILDEPTVGLDPVL 146
++ +L+ P++L+LDEP++GL P++
Sbjct: 146 LAIGRALMSQPRLLLLDEPSLGLAPII 172
>gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster
assembly, permease and ATPase components
[Posttranslational modification, protein turnover,
chaperones].
Length = 497
Score = 43.1 bits (102), Expect = 1e-05
Identities = 38/142 (26%), Positives = 68/142 (47%), Gaps = 21/142 (14%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAEDSP-- 77
++G SG GK+T+L + ++ GSI++ + +RD+ Q L R+ ++ +D+
Sbjct: 293 AIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDV---TQQSLRRAIGIVPQDTVLF 349
Query: 78 ----SYLLEYYNCSTLEDVFLYLCEQDQI----------LFSLVGSESAF--GGQQRRVS 121
+Y ++Y + E QI + VG GG+++RV+
Sbjct: 350 NDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVA 409
Query: 122 FAVSLIHDPKILILDEPTVGLD 143
A +++ +P ILILDE T LD
Sbjct: 410 IARTILKNPPILILDEATSALD 431
>gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein.
[Transport and binding proteins, Other].
Length = 711
Score = 43.2 bits (102), Expect = 2e-05
Identities = 37/143 (25%), Positives = 65/143 (45%), Gaps = 17/143 (11%)
Query: 16 VTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIG---YMPQVGLMRSGALL 72
V A L+GPSG GK+T+ + + N + G + L + QV L+ +L
Sbjct: 509 VVA--LVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVL 566
Query: 73 ----AEDSPSYLLEYY------NCSTLEDVFLYLCEQDQILFSLVGSESAF--GGQQRRV 120
++ +Y L + + ++ E + VG + + GGQ++R+
Sbjct: 567 FSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRI 626
Query: 121 SFAVSLIHDPKILILDEPTVGLD 143
+ A +L+ P++LILDE T LD
Sbjct: 627 AIARALVRKPRVLILDEATSALD 649
>gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit;
Provisional.
Length = 506
Score = 43.0 bits (102), Expect = 2e-05
Identities = 23/57 (40%), Positives = 30/57 (52%), Gaps = 11/57 (19%)
Query: 98 EQDQILFSL----VGSESAF-------GGQQRRVSFAVSLIHDPKILILDEPTVGLD 143
E IL S+ V + S GG Q++ A L+ +PKILILDEPT G+D
Sbjct: 381 ELKTILESIQRLKVKTASPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGID 437
Score = 33.7 bits (78), Expect = 0.020
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 114 GGQQRRVSFAVSLIHDPKILILDEPTVGL 142
GQQ+ V A +L ++LILDEPT L
Sbjct: 146 LGQQQLVEIAKALNKQARLLILDEPTASL 174
>gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding
subunit; Provisional.
Length = 255
Score = 42.7 bits (101), Expect = 2e-05
Identities = 16/30 (53%), Positives = 22/30 (73%)
Query: 115 GQQRRVSFAVSLIHDPKILILDEPTVGLDP 144
GQQRR+ A ++ P+IL+LDEP GL+P
Sbjct: 157 GQQRRLEIARCMVTQPEILMLDEPAAGLNP 186
Score = 29.2 bits (66), Expect = 0.61
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSISL 49
L+GP+G GKTT+ +C+ + G+I L
Sbjct: 36 LIGPNGAGKTTVFNCLTGFYKPTGGTILL 64
>gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase
component [General function prediction only].
Length = 249
Score = 42.3 bits (100), Expect = 2e-05
Identities = 39/145 (26%), Positives = 61/145 (42%), Gaps = 25/145 (17%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAEDSPSYL 80
L+GP+G GKTTL+ I + R G + T D+ +P+ + R+G P+
Sbjct: 36 LIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDT--DLTKLPEHRIARAGIGRKFQKPTVF 93
Query: 81 LEYYNCSTLE-------DVFLYLC------EQDQI--LFSLVGSESAFG--------GQQ 117
LE VF L E+ +I L + +G GQ+
Sbjct: 94 ENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQK 153
Query: 118 RRVSFAVSLIHDPKILILDEPTVGL 142
+ + + L DPK+L+LDEP G+
Sbjct: 154 QWLEIGMLLAQDPKLLLLDEPVAGM 178
>gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein
(MRP). This model describes multi drug
resistance-associated protein (MRP) in eukaryotes. The
multidrug resistance-associated protein is an integral
membrane protein that causes multidrug resistance when
overexpressed in mammalian cells. It belongs to ABC
transporter superfamily. The protein topology and
function was experimentally demonstrated by epitope
tagging and immunofluorescence. Insertion of tags in the
critical regions associated with drug efflux, abrogated
its function. The C-terminal domain seem to highly
conserved [Transport and binding proteins, Other].
Length = 1522
Score = 43.0 bits (101), Expect = 2e-05
Identities = 36/146 (24%), Positives = 67/146 (45%), Gaps = 16/146 (10%)
Query: 8 SLNTVIFGVTAYGLL---GPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVG 64
+LN + F + L+ G GCGK++LLS ++ + G + + + Y+PQ
Sbjct: 653 TLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG----SVAYVPQQA 708
Query: 65 LMRSGAL-------LAEDSPSYLLEYYNCSTLEDVFLYLCEQDQILFSLVGSESAFGGQQ 117
+++ +L A + Y C+ L D+ + L D+ G + GGQ+
Sbjct: 709 WIQNDSLRENILFGKALNEKYYQQVLEACALLPDLEI-LPSGDRTEIGEKGVNLS-GGQK 766
Query: 118 RRVSFAVSLIHDPKILILDEPTVGLD 143
+RVS A ++ + I + D+P +D
Sbjct: 767 QRVSLARAVYSNADIYLFDDPLSAVD 792
Score = 40.7 bits (95), Expect = 1e-04
Identities = 40/165 (24%), Positives = 66/165 (40%), Gaps = 34/165 (20%)
Query: 3 DVSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGY--- 59
D+ +N I G G++G +G GK++L + G I + + IG
Sbjct: 1299 DLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDL 1358
Query: 60 ------MPQVGLMRSGALLAEDSP---------------SYLLEYYNCSTLEDVFLYLCE 98
+PQ ++ SG+L P ++L + S L D + C
Sbjct: 1359 RFKITIIPQDPVLFSGSLRMNLDPFSQYSDEEVWWALELAHLKTF--VSALPDKLDHECA 1416
Query: 99 QDQILFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLD 143
+ G E+ GQ++ V A +L+ KIL+LDE T +D
Sbjct: 1417 E--------GGENLSVGQRQLVCLARALLRKTKILVLDEATAAVD 1453
>gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional.
Length = 1470
Score = 42.9 bits (101), Expect = 2e-05
Identities = 44/144 (30%), Positives = 67/144 (46%), Gaps = 24/144 (16%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDH--GSISLSART------VRDIGYM-------PQVGL 65
L+G SG GKTTL+ + R + G I +S R GY PQV +
Sbjct: 911 LMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTV 970
Query: 66 MRS---GALLAEDSPSYLLEYYNCSTLEDVFLYLCEQDQILFSLVGSESAFG---GQQRR 119
S A L P + + +++V + L E D + ++VG G Q++R
Sbjct: 971 RESLIYSAFLR--LPKEVSKEEKMMFVDEV-MELVELDNLKDAIVGLPGVTGLSTEQRKR 1027
Query: 120 VSFAVSLIHDPKILILDEPTVGLD 143
++ AV L+ +P I+ +DEPT GLD
Sbjct: 1028 LTIAVELVANPSIIFMDEPTSGLD 1051
Score = 31.0 bits (70), Expect = 0.23
Identities = 34/104 (32%), Positives = 52/104 (50%), Gaps = 16/104 (15%)
Query: 51 ARTVRDIGYMPQ--VGL-MRSGALLAEDSPSYLLEYYNCSTLEDVFLYLCEQDQILFSLV 107
AR +D G P+ V L M++ A E S L+ Y TL+ + L +C +D I V
Sbjct: 280 ARREKDAGIFPEAEVDLFMKATA--MEGVKSSLITDY---TLKILGLDIC-KDTI----V 329
Query: 108 GSE---SAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLSF 148
G E GGQ++RV+ ++ K L +DE + GLD ++
Sbjct: 330 GDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTY 373
>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system,
component A2. The enzyme that catalyzes the final step
in methanogenesis, methyl coenzyme M reductase, contains
alpha, beta, and gamma chains. In older literature, the
complex of alpha, beta, and gamma chains was termed
component C, while this single chain protein was termed
methyl coenzyme M reductase system component A2 [Energy
metabolism, Methanogenesis].
Length = 520
Score = 42.9 bits (101), Expect = 2e-05
Identities = 16/32 (50%), Positives = 24/32 (75%)
Query: 114 GGQQRRVSFAVSLIHDPKILILDEPTVGLDPV 145
G++ RV+ A LI +P+I+ILDEPT +DP+
Sbjct: 430 EGERHRVALAQVLIKEPRIVILDEPTGTMDPI 461
Score = 35.2 bits (81), Expect = 0.008
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 114 GGQQRRVSFAVSLIHDPKILILDEPTVGLDP 144
GG+++RV A L +P + + DEPT LDP
Sbjct: 171 GGEKQRVVLARQLAKEPFLFLADEPTGTLDP 201
>gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 289
Score = 42.7 bits (100), Expect = 2e-05
Identities = 18/31 (58%), Positives = 22/31 (70%)
Query: 114 GGQQRRVSFAVSLIHDPKILILDEPTVGLDP 144
GGQ+RRV+ A + D L+LDEPT GLDP
Sbjct: 153 GGQKRRVALAGIIAMDGNTLVLDEPTGGLDP 183
>gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 276
Score = 42.4 bits (99), Expect = 2e-05
Identities = 43/155 (27%), Positives = 72/155 (46%), Gaps = 35/155 (22%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLD------HGSISLSARTV---RDI-GYMPQVGLM---- 66
L+GP+G GKTT L + NR+ G + L R++ RD+ + +VG++
Sbjct: 52 LMGPTGSGKTTFLRTL-NRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRP 110
Query: 67 -----------RSGALLAEDSPSYLLEYYNCSTLEDVFLYLCEQDQILFSLVGSESAF-- 113
+G + P + L +V L+ +D++ S+S F
Sbjct: 111 NPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRL------SDSPFRL 164
Query: 114 -GGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLS 147
GGQQ+ + A +L +P++L+LDEPT LDP +
Sbjct: 165 SGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTT 199
>gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit;
Provisional.
Length = 232
Score = 42.3 bits (100), Expect = 2e-05
Identities = 47/156 (30%), Positives = 64/156 (41%), Gaps = 51/156 (32%)
Query: 21 LLGPSGCGKTTLLSCIVN-------RLRL---DHGSISLSAR---------------TVR 55
+LGPSG GK+TLL+ I L L DH + S R TV
Sbjct: 30 ILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVA 89
Query: 56 -DIGYMPQVGLMRSGALLAEDSPSYLLEYYNCSTLED----VFLYLCEQDQILFSLVGSE 110
+IG +GL +P L L + + + +L L G
Sbjct: 90 QNIG----LGL----------NPGLKLNAAQREKLHAIARQMGI-----EDLLARLPGQL 130
Query: 111 SAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVL 146
S GGQ++RV+ A L+ + IL+LDEP LDP L
Sbjct: 131 S--GGQRQRVALARCLVREQPILLLDEPFSALDPAL 164
>gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of
polysaccharide transport system. The KpsT/Wzt ABC
transporter subfamily is involved in extracellular
polysaccharide export. Among the variety of
membrane-linked or extracellular polysaccharides
excreted by bacteria, only capsular polysaccharides,
lipopolysaccharides, and teichoic acids have been shown
to be exported by ABC transporters. A typical system is
made of a conserved integral membrane and an ABC. In
addition to these proteins, capsular polysaccharide
exporter systems require two 'accessory' proteins to
perform their function: a periplasmic (E.coli) or a
lipid-anchored outer membrane protein called OMA
(Neisseria meningitidis and Haemophilus influenza) and a
cytoplasmic membrane protein MPA2.
Length = 224
Score = 42.1 bits (100), Expect = 2e-05
Identities = 29/123 (23%), Positives = 51/123 (41%), Gaps = 11/123 (8%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAEDSPSY 79
GL+G +G GK+TLL + D G++++ R +G G L ++
Sbjct: 52 GLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLG--LGGGFN--PELTGRENIYL 107
Query: 80 LLEYYNCSTLEDVFLY-----LCEQDQILFSLVGSESAFGGQQRRVSFAVSLIHDPKILI 134
S E E + V + S+ G + R++FA++ +P IL+
Sbjct: 108 NGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSS--GMKARLAFAIATALEPDILL 165
Query: 135 LDE 137
+DE
Sbjct: 166 IDE 168
>gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in
lysophospholipase L1 biosynthesis, ATPase component
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 228
Score = 42.0 bits (99), Expect = 2e-05
Identities = 36/142 (25%), Positives = 58/142 (40%), Gaps = 21/142 (14%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAEDSPSY 79
++GPSG GK+TLL+ + G + L + + + +R+ + +
Sbjct: 40 AIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLD-EDARAALRARHVGFVFQSFH 98
Query: 80 LLEYYNCSTLEDVFLYLC----------EQDQILFSLVGSESAF--------GGQQRRVS 121
L+ N + LE+V L L + L VG GG+Q+RV+
Sbjct: 99 LIP--NLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVA 156
Query: 122 FAVSLIHDPKILILDEPTVGLD 143
A + P +L DEPT LD
Sbjct: 157 LARAFAGRPDVLFADEPTGNLD 178
>gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein;
Provisional.
Length = 271
Score = 42.1 bits (99), Expect = 2e-05
Identities = 15/32 (46%), Positives = 23/32 (71%)
Query: 114 GGQQRRVSFAVSLIHDPKILILDEPTVGLDPV 145
GGQQ+R+ A L +P ++++DEPT LDP+
Sbjct: 170 GGQQQRLCIARCLAIEPDVILMDEPTSALDPI 201
>gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein;
Provisional.
Length = 501
Score = 42.3 bits (100), Expect = 3e-05
Identities = 17/30 (56%), Positives = 23/30 (76%)
Query: 114 GGQQRRVSFAVSLIHDPKILILDEPTVGLD 143
GG Q++V+ A L+ PK+LILDEPT G+D
Sbjct: 398 GGNQQKVAIARGLMTRPKVLILDEPTRGVD 427
Score = 27.3 bits (61), Expect = 4.1
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 106 LVGSESAFGGQQRRVSFAVSLIHDPKILILDEPT 139
LVG S G+Q+ V A L + K++I+DEPT
Sbjct: 138 LVGELSI--GEQQMVEIAKVLSFESKVIIMDEPT 169
>gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog
[General function prediction only].
Length = 591
Score = 42.3 bits (100), Expect = 3e-05
Identities = 40/134 (29%), Positives = 60/134 (44%), Gaps = 27/134 (20%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQ---------VG-LMRSG 69
G+LGP+G GKTT + + ++ D GS ++ + Y PQ V L+RS
Sbjct: 371 GILGPNGIGKTTFVKLLAGVIKPDEGSEE----DLK-VSYKPQYISPDYDGTVEDLLRSA 425
Query: 70 ALLAEDSPSYLLEYYNCSTLEDVFLYLCEQDQILFSLVGSESAFGGQQRRVSFAVSLIHD 129
A S + E LED +L V S GG+ +RV+ A +L +
Sbjct: 426 IRSAFGSSYFKTEIVKPLNLED----------LLERPVDELS--GGELQRVAIAAALSRE 473
Query: 130 PKILILDEPTVGLD 143
+ +LDEP+ LD
Sbjct: 474 ADLYLLDEPSAYLD 487
Score = 28.8 bits (65), Expect = 1.3
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 114 GGQQRRVSFAVSLIHDPKILILDEPTVGLD 143
GG+ +RV+ A +L+ D + DEP+ LD
Sbjct: 216 GGELQRVAIAAALLRDADVYFFDEPSSYLD 245
Score = 26.1 bits (58), Expect = 8.3
Identities = 9/14 (64%), Positives = 12/14 (85%)
Query: 20 GLLGPSGCGKTTLL 33
G+LGP+G GK+T L
Sbjct: 104 GILGPNGIGKSTAL 117
>gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose
transporter, MalK. ATP binding cassette (ABC) proteins
function from bacteria to human, mediating the
translocation of substances into and out of cells or
organelles. ABC transporters contain two
transmembrane-spanning domains (TMDs) or subunits and
two nucleotide binding domains (NBDs) or subunits that
couple transport to the hydrolysis of ATP. In the
maltose transport system, the periplasmic maltose
binding protein (MBP) stimulates the ATPase activity of
the membrane-associated transporter, which consists of
two transmembrane subunits, MalF and MalG, and two
copies of the ATP binding subunit, MalK, and becomes
tightly bound to the transporter in the catalytic
transition state, ensuring that maltose is passed to
the transporter as ATP is hydrolyzed.
Length = 213
Score = 41.5 bits (98), Expect = 3e-05
Identities = 18/37 (48%), Positives = 20/37 (54%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDI 57
LLGPSGCGKTT L I G I + R V D+
Sbjct: 31 LLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDL 67
Score = 38.4 bits (90), Expect = 4e-04
Identities = 12/30 (40%), Positives = 22/30 (73%)
Query: 114 GGQQRRVSFAVSLIHDPKILILDEPTVGLD 143
GGQ++RV+ +++ +PK+ ++DEP LD
Sbjct: 133 GGQRQRVALGRAIVREPKVFLMDEPLSNLD 162
>gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein
MsbA. This family consists of a single polypeptide
chain transporter in the ATP-binding cassette (ABC)
transporter family, MsbA, which exports lipid A. It may
also act in multidrug resistance. Lipid A, a part of
lipopolysaccharide, is found in the outer leaflet of the
outer membrane of most Gram-negative bacteria. Members
of this family are restricted to the Proteobacteria
(although lipid A is more broadly distributed) and often
are clustered with lipid A biosynthesis genes [Cell
envelope, Biosynthesis and degradation of surface
polysaccharides and lipopolysaccharides, Transport and
binding proteins, Other].
Length = 571
Score = 42.0 bits (99), Expect = 3e-05
Identities = 44/153 (28%), Positives = 68/153 (44%), Gaps = 16/153 (10%)
Query: 7 SSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDI---GYMPQV 63
S++ VI L+G SG GK+TL++ I D G I L + D QV
Sbjct: 349 DSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQV 408
Query: 64 GLMRSGALLAEDSPSYLLEY-----YNCSTLEDVFLYLCEQDQI------LFSLVGSESA 112
L+ +L D+ + + Y + + +E QD + L + +G
Sbjct: 409 ALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGV 468
Query: 113 F--GGQQRRVSFAVSLIHDPKILILDEPTVGLD 143
GGQ++R++ A +L+ D ILILDE T LD
Sbjct: 469 LLSGGQRQRLAIARALLKDAPILILDEATSALD 501
>gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 271
Score = 41.9 bits (99), Expect = 4e-05
Identities = 37/145 (25%), Positives = 64/145 (44%), Gaps = 26/145 (17%)
Query: 19 YGLLGPSGCGKTTLLSCIVNRLRLDHGSIS-----LSARTVRD----IGYMPQ------V 63
+LG +G GK+T+ + L+ G I +S +++ IG + Q +
Sbjct: 38 VAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFI 97
Query: 64 GLMRSGALLAEDSPSYLLE--YYNCSTLEDVFLYLCEQDQILFSLVGSESAF--GGQQRR 119
G ED ++ LE ++D+ L ++ + + E GGQ++R
Sbjct: 98 GAT------VEDDIAFGLENKKVPPKKMKDIIDDLAKKVGME-DYLDKEPQNLSGGQKQR 150
Query: 120 VSFAVSLIHDPKILILDEPTVGLDP 144
V+ A L +P+I+I DE T LDP
Sbjct: 151 VAIASVLALNPEIIIFDESTSMLDP 175
>gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed.
Length = 635
Score = 41.9 bits (99), Expect = 5e-05
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 114 GGQQRRVSFAVSLIHDPKILILDEPTVGLD 143
GG R+ + +L+ +P +L+LDEPT LD
Sbjct: 159 GGWLRKAALGRALVSNPDVLLLDEPTNHLD 188
Score = 38.8 bits (91), Expect = 5e-04
Identities = 46/146 (31%), Positives = 61/146 (41%), Gaps = 46/146 (31%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAEDSPSYL 80
L+GP+GCGKTTLL ++ +L+ D G I T ++ Y Q R AE P
Sbjct: 350 LIGPNGCGKTTLLKLMLGQLQADSGRIHCG--TKLEVAYFDQ---HR-----AELDPE-- 397
Query: 81 LEYYNCSTLED-----------------VFLYLCEQDQILFS------LVGSESAFGGQQ 117
T+ D V YL QD LF V + S GG++
Sbjct: 398 ------KTVMDNLAEGKQEVMVNGRPRHVLGYL--QD-FLFHPKRAMTPVKALS--GGER 446
Query: 118 RRVSFAVSLIHDPKILILDEPTVGLD 143
R+ A + +LILDEPT LD
Sbjct: 447 NRLLLARLFLKPSNLLILDEPTNDLD 472
>gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC
transporter, ATP-binding protein. Members of this
protein family are ABC transporter ATP-binding subunits,
part of a three-gene putative bacteriocin transport
operon. The other subunits include another ATP-binding
subunit (TIGR03796), which has an N-terminal leader
sequence cleavage domain, and an HlyD homolog
(TIGR03794). In a number of genomes, members of protein
families related to nitrile hydratase alpha subunit or
to nif11 have undergone paralogous family expansions,
with members possessing a putative bacteriocin cleavage
region ending with a classic Gly-Gly motif. Those sets
of putative bacteriocins, members of this protein family
and its partners TIGR03794 and TIGR03796, and
cyclodehydratase/docking scaffold fusion proteins of
thiazole/oxazole biosynthesis frequently show correlated
species distribution and co-clustering within many of
those genomes [Transport and binding proteins, Amino
acids, peptides and amines, Cellular processes,
Biosynthesis of natural products].
Length = 686
Score = 41.9 bits (99), Expect = 5e-05
Identities = 42/150 (28%), Positives = 71/150 (47%), Gaps = 38/150 (25%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRL-----DHGSI--------SLSARTVR-DIGYMPQVGL 65
++GPSG GK+TLL RL L + GS+ L + VR +G + Q G
Sbjct: 483 AIVGPSGSGKSTLL-----RLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGR 537
Query: 66 MRSGALLAEDSPSYLLEYYNCSTLEDVF----LYLCEQDQI------LFSLV--GSESAF 113
+ SG++ + L TL++ + + +D I + +++ G +
Sbjct: 538 LMSGSIFENIAGGAPL------TLDEAWEAARMAGLAED-IRAMPMGMHTVISEGGGTLS 590
Query: 114 GGQQRRVSFAVSLIHDPKILILDEPTVGLD 143
GGQ++R+ A +L+ P+IL+ DE T LD
Sbjct: 591 GGQRQRLLIARALVRKPRILLFDEATSALD 620
>gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 271
Score = 41.1 bits (96), Expect = 6e-05
Identities = 39/143 (27%), Positives = 67/143 (46%), Gaps = 22/143 (15%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAEDSPSY 79
GL+G +GCGK+TL + LR G++ + + D + L + A + +D P
Sbjct: 31 GLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPL-DYSKRGLLALRQQVATVFQD-PEQ 88
Query: 80 LLEYYNCSTLEDVFLYL----CEQDQIL------FSLVGSES--------AFGGQQRRVS 121
+ Y + + D+ L + +I +LV ++ GQ++RV+
Sbjct: 89 QIFYTDIDS--DIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVA 146
Query: 122 FAVSLIHDPKILILDEPTVGLDP 144
A +L+ + L+LDEPT GLDP
Sbjct: 147 IAGALVLQARYLLLDEPTAGLDP 169
>gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein
YejF; Provisional.
Length = 529
Score = 41.2 bits (97), Expect = 6e-05
Identities = 16/30 (53%), Positives = 23/30 (76%)
Query: 114 GGQQRRVSFAVSLIHDPKILILDEPTVGLD 143
GGQ++R++ A +LI P ++ILDEPT LD
Sbjct: 428 GGQRQRIAIARALILKPSLIILDEPTSSLD 457
Score = 38.1 bits (89), Expect = 7e-04
Identities = 15/30 (50%), Positives = 23/30 (76%)
Query: 114 GGQQRRVSFAVSLIHDPKILILDEPTVGLD 143
GG+++RV A++L+ P++LI DEPT LD
Sbjct: 159 GGERQRVMIAMALLTRPELLIADEPTTALD 188
>gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE;
Provisional.
Length = 268
Score = 40.8 bits (96), Expect = 7e-05
Identities = 43/151 (28%), Positives = 59/151 (39%), Gaps = 30/151 (19%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAEDSPS- 78
LLG SGCGK+TL +V G++S + + + R ++ +DS S
Sbjct: 42 ALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISA 101
Query: 79 ----------------YLL-------EYYNCSTLEDVFLYLCEQDQILFSLVGSESAFGG 115
+LL L V L D +L S GG
Sbjct: 102 VNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDL----DDSVLDKRPPQLS--GG 155
Query: 116 QQRRVSFAVSLIHDPKILILDEPTVGLDPVL 146
Q +RV A +L +PK+LILDE LD VL
Sbjct: 156 QLQRVCLARALAVEPKLLILDEAVSNLDLVL 186
>gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component
[Coenzyme metabolism].
Length = 231
Score = 40.8 bits (96), Expect = 7e-05
Identities = 40/148 (27%), Positives = 57/148 (38%), Gaps = 35/148 (23%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAEDSPSYL 80
+LGPSG GK+TLL+ I G I ++ + + AE S L
Sbjct: 30 ILGPSGAGKSTLLNLIAGFETPASGEILINGVDH-------------TASPPAERPVSML 76
Query: 81 LEYYNCSTLEDVF----------LYLCEQDQILF----SLVGSESAF--------GGQQR 118
+ N V L L + + + VG GGQ++
Sbjct: 77 FQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQ 136
Query: 119 RVSFAVSLIHDPKILILDEPTVGLDPVL 146
RV+ A L+ + IL+LDEP LDP L
Sbjct: 137 RVALARCLVREQPILLLDEPFSALDPAL 164
>gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK;
Provisional.
Length = 258
Score = 40.7 bits (96), Expect = 8e-05
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 5/54 (9%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISLSAR--TVRDIGYMPQVG---LMRS 68
G++G SG GKTTLL+ + RL D G + R +RD+ + + L+R+
Sbjct: 36 GIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERRRLLRT 89
Score = 34.5 bits (80), Expect = 0.011
Identities = 14/30 (46%), Positives = 22/30 (73%)
Query: 114 GGQQRRVSFAVSLIHDPKILILDEPTVGLD 143
GG Q+R+ A +L+ P+++ +DEPT GLD
Sbjct: 154 GGMQQRLQIARNLVTHPRLVFMDEPTGGLD 183
>gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed.
Length = 402
Score = 40.6 bits (95), Expect = 9e-05
Identities = 41/139 (29%), Positives = 61/139 (43%), Gaps = 15/139 (10%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSI--------SLSARTV-RDIGYMPQ---VGLMR 67
GL+GP+G GKTTLL I L G++ +LSAR R + +PQ +
Sbjct: 33 GLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEF 92
Query: 68 SGALLAEDSPSYLLEYYNCSTLED---VFLYLCEQDQILFSLVGSESAFGGQQRRVSFAV 124
+ E + ++ T D V + F+ S GG+++RV A
Sbjct: 93 DVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLAR 152
Query: 125 SLIHDPKILILDEPTVGLD 143
+L +L+LDEPT LD
Sbjct: 153 ALAQATPVLLLDEPTASLD 171
>gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 279
Score = 40.4 bits (95), Expect = 1e-04
Identities = 51/166 (30%), Positives = 73/166 (43%), Gaps = 33/166 (19%)
Query: 3 DVSASSLNTVIFGVTA---YGLLGPSGCGKTTLLSCIVNRLRLDHGSIS-----LSARTV 54
D + +L V F V ++G +G GK+TL + L + G+I+ LS TV
Sbjct: 17 DAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETV 76
Query: 55 RDIGYMPQVGLMRS-------GALLAEDSPSYLLEYYNCSTLEDVFLYLCEQDQILFSLV 107
D+ QVG++ GA + +D ++ LE E V E+ V
Sbjct: 77 WDV--RRQVGMVFQNPDNQFVGATV-QDDVAFGLENIGVPREEMV-----ERVDQALRQV 128
Query: 108 GSESAF---------GGQQRRVSFAVSLIHDPKILILDEPTVGLDP 144
G E F GGQ++RV+ A L P I+ILDE T LDP
Sbjct: 129 GMED-FLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDP 173
>gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein;
Provisional.
Length = 638
Score = 40.5 bits (95), Expect = 1e-04
Identities = 41/136 (30%), Positives = 61/136 (44%), Gaps = 27/136 (19%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAEDSPSY 79
GLLG +G GK+TL+ + L G I L A+ ++ +GY Q L L A++SP
Sbjct: 342 GLLGRNGAGKSTLIKLLAGELAPVSGEIGL-AKGIK-LGYFAQHQLE---FLRADESPLQ 396
Query: 80 LLEYYNCSTLEDVFLYLCEQDQILFSLVG------------SESAFGGQQRRVSFAVSLI 127
L L E +Q L +G + GG++ R+ A+ +
Sbjct: 397 HL----------ARLAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVW 446
Query: 128 HDPKILILDEPTVGLD 143
P +L+LDEPT LD
Sbjct: 447 QRPNLLLLDEPTNHLD 462
Score = 38.2 bits (89), Expect = 7e-04
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISL 49
GL+G +GCGK+TLL+ + N + D GS +
Sbjct: 31 GLVGKNGCGKSTLLALLKNEISADGGSYTF 60
Score = 30.1 bits (68), Expect = 0.43
Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 111 SAF-GGQQRRVSFAVSLIHDPKILILDEPTVGLD 143
S F GG + R++ A +LI +L+LDEPT LD
Sbjct: 148 SDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLD 181
>gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein;
Provisional.
Length = 272
Score = 40.3 bits (94), Expect = 1e-04
Identities = 39/139 (28%), Positives = 63/139 (45%), Gaps = 18/139 (12%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRD------IGYMPQVGLMR-SGALLA 73
L+G +G GK+TL ++ +RL G IS+ + R + Y+PQ + S +L
Sbjct: 38 LVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYVPQSEEVDWSFPVLV 97
Query: 74 EDSPSY-------LLEYYNCSTLEDVFLYLCEQDQILFS--LVGSESAFGGQQRRVSFAV 124
ED L + V L D + F +G S GGQ++RV A
Sbjct: 98 EDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELS--GGQKKRVFLAR 155
Query: 125 SLIHDPKILILDEPTVGLD 143
++ ++++LDEP G+D
Sbjct: 156 AIAQQGQVILLDEPFTGVD 174
>gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 263
Score = 40.4 bits (95), Expect = 1e-04
Identities = 41/155 (26%), Positives = 59/155 (38%), Gaps = 43/155 (27%)
Query: 22 LGPSGCGKTTLLSCIVNRLRLDHGSISLS----------------ARTVRDI--GYMPQV 63
+G +G GK+TLL+ I L+ G I + AR +D G P++
Sbjct: 38 IGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPEL 97
Query: 64 ------------GLMR--SGALLAEDSPSYLLEYYNCSTLEDVFLYLCEQDQILFSLVGS 109
G R S AL S+ + L L S
Sbjct: 98 TIEENLALAESRGKKRGLSSALNERRRSSFRERL---ARLGLGLENRLSDRIGLLS---- 150
Query: 110 ESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDP 144
GGQ++ +S ++ +H PKIL+LDE T LDP
Sbjct: 151 ----GGQRQALSLLMATLHPPKILLLDEHTAALDP 181
>gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit;
Provisional.
Length = 327
Score = 40.3 bits (95), Expect = 1e-04
Identities = 13/30 (43%), Positives = 22/30 (73%)
Query: 114 GGQQRRVSFAVSLIHDPKILILDEPTVGLD 143
GGQ++R++ A +L+ DP +++ DEP LD
Sbjct: 157 GGQRQRIAIARALMLDPDVVVADEPVSALD 186
>gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding
protein OppF; Provisional.
Length = 331
Score = 40.5 bits (95), Expect = 1e-04
Identities = 42/151 (27%), Positives = 68/151 (45%), Gaps = 35/151 (23%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSIS--------LSA---RTVR-DIGYMPQVGL-- 65
G++G SGCGK+T I+ ++ G ++ + R VR DI + Q L
Sbjct: 51 GVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLAS 110
Query: 66 ----MRSGALLAEDSPSYLLEYYNCSTLEDVFLYLCEQDQILFSLVG---------SESA 112
M G ++AE P L Y+ + ++V ++ + + VG
Sbjct: 111 LNPRMTIGEIIAE--P--LRTYHPKLSRQEVK----DRVKAMMLKVGLLPNLINRYPHEF 162
Query: 113 FGGQQRRVSFAVSLIHDPKILILDEPTVGLD 143
GGQ +R+ A +LI +PK++I DEP LD
Sbjct: 163 SGGQCQRIGIARALILEPKLIICDEPVSALD 193
>gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein
YbbL; Provisional.
Length = 225
Score = 39.7 bits (93), Expect = 1e-04
Identities = 43/149 (28%), Positives = 71/149 (47%), Gaps = 16/149 (10%)
Query: 9 LNTVIFGVTA--YGLL-GPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIG---YMPQ 62
LN + F + A + L+ GPSGCGK+TLL + + + G++ + + Y Q
Sbjct: 23 LNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQ 82
Query: 63 VGL-MRSGALLAE---DSPSYLLEYYNCSTLEDVFLYLCEQ----DQILFSLVGSESAFG 114
V ++ L + D+ + + N +FL E+ D IL + S G
Sbjct: 83 VSYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELS--G 140
Query: 115 GQQRRVSFAVSLIHDPKILILDEPTVGLD 143
G+++R+S +L PK+L+LDE T LD
Sbjct: 141 GEKQRISLIRNLQFMPKVLLLDEITSALD 169
>gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit;
Provisional.
Length = 280
Score = 39.7 bits (93), Expect = 2e-04
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 114 GGQQRRVSFAVSLIHDPKILILDEPTVGLDP 144
GGQ++RV+ A L P+ +I DEPT LDP
Sbjct: 147 GGQKQRVAIAGILAMRPECIIFDEPTAMLDP 177
>gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein. This model
describes glucan exporter ATP binding protein in
bacteria. It belongs to the larger ABC transporter
superfamily with the characteristic ATP binding motif.
The In general, this protein is in some ways implicated
in osmoregulation and suggested to participate in the
export of glucan from the cytoplasm to periplasm. The
cyclic beta-1,2-glucan in the bactrerial periplasmic
space is suggested to confer the property of high
osmolority. It has also been demonstrated that mutants
in this loci have lost functions of virulence and
motility. It is unclear as to how virulence and
osmoadaptaion are related [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 585
Score = 39.9 bits (93), Expect = 2e-04
Identities = 39/165 (23%), Positives = 68/165 (41%), Gaps = 34/165 (20%)
Query: 5 SASSLNTVIFGVTA---YGLLGPSGCGKTTLLSCIVNRLRLDHGSISLS----------- 50
S+ + V F A ++GP+G GKTTL++ + G I +
Sbjct: 347 SSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRES 406
Query: 51 -----ARTVRDIGYMPQ-----VGLMRSGALLAEDSPSYLLEYYNCSTLEDVFLYLCEQD 100
A +D G + + L R GA E + E + D ++ ++
Sbjct: 407 LRKSIATVFQDAGLFNRSIRENIRLGREGATDEE-----VYEAAKAAAAHD---FILKRS 458
Query: 101 QILFSLVGSESA--FGGQQRRVSFAVSLIHDPKILILDEPTVGLD 143
+LVG GG+++R++ A +++ + IL+LDE T LD
Sbjct: 459 NGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALD 503
>gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette
component of monosaccharide transport system. This
family represents the domain I of the carbohydrate
uptake proteins that transport only monosaccharides
(Monos). The Carb_Monos family is involved in the uptake
of monosaccharides, such as pentoses (such as xylose,
arabinose, and ribose) and hexoses (such as xylose,
arabinose, and ribose), that cannot be broken down to
simple sugars by hydrolysis. Pentoses include xylose,
arabinose, and ribose. Important hexoses include
glucose, galactose, and fructose. In members of the
Carb_monos family, the single hydrophobic gene product
forms a homodimer while the ABC protein represents a
fusion of two nucleotide-binding domains. However, it is
assumed that two copies of the ABC domains are present
in the assembled transporter.
Length = 163
Score = 38.9 bits (92), Expect = 2e-04
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 114 GGQQRRVSFAVSLIHDPKILILDEPTVGLDP 144
G+++ V A +L + ++LILDEPT L P
Sbjct: 85 VGERQMVEIARALARNARLLILDEPTAALTP 115
Score = 32.0 bits (74), Expect = 0.059
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 19 YGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVR 55
+ LLG +G GK+TL+ + + D G I + + V
Sbjct: 29 HALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVS 65
>gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 274
Score = 39.7 bits (93), Expect = 2e-04
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 115 GQQRRVSFAVSLIHDPKILILDEPTVGLDP 144
GQ++RV+ A L DP +++LDEP LDP
Sbjct: 142 GQKKRVAIAGVLAMDPDVIVLDEPMAYLDP 171
>gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein;
Provisional.
Length = 260
Score = 39.6 bits (93), Expect = 2e-04
Identities = 15/32 (46%), Positives = 22/32 (68%)
Query: 114 GGQQRRVSFAVSLIHDPKILILDEPTVGLDPV 145
GGQQ+R+ A + P++L+LDEP LDP+
Sbjct: 159 GGQQQRLCIARGIAIRPEVLLLDEPCSALDPI 190
Score = 35.4 bits (82), Expect = 0.006
Identities = 15/25 (60%), Positives = 19/25 (76%), Gaps = 3/25 (12%)
Query: 16 VTAYGLLGPSGCGKTTLLSCIVNRL 40
VTA+ +GPSGCGK+TLL NR+
Sbjct: 41 VTAF--IGPSGCGKSTLLR-TFNRM 62
>gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE.
This family represents the NikE subunit of a
multisubunit nickel import ABC transporter complex.
Nickel, once imported, may be used in urease and in
certain classes of hydrogenase and superoxide dismutase
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 265
Score = 39.4 bits (92), Expect = 2e-04
Identities = 42/146 (28%), Positives = 65/146 (44%), Gaps = 20/146 (13%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAEDSPSY 79
GLLG SGCGK+TL ++ + G++S + + + + R L+ +DSPS
Sbjct: 41 GLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSA 100
Query: 80 L-----LEYYNCSTLEDVFLYLCEQDQI-----LFSLVGSESAF---------GGQQRRV 120
+ + L L E +Q L +VG S GGQ +R+
Sbjct: 101 VNPRMTVRQIIGEPLRH-LTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRI 159
Query: 121 SFAVSLIHDPKILILDEPTVGLDPVL 146
+ A +L PK+++LDE LD VL
Sbjct: 160 NIARALAVKPKLIVLDEAVSNLDMVL 185
>gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein.
Several bacterial species have enzymes xylose isomerase
and xylulokinase enzymes for xylose utilization. Members
of this protein family are the ATP-binding cassette
(ABC) subunit of the known or predicted high-affinity
xylose ABC transporter for xylose import. These genes,
which closely resemble other sugar transport ABC
transporter genes, typically are encoded near xylose
utilization enzymes and regulatory proteins. Note that
this form of the transporter contains two copies of the
ABC transporter domain (pfam00005) [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 500
Score = 39.8 bits (93), Expect = 2e-04
Identities = 15/30 (50%), Positives = 22/30 (73%)
Query: 114 GGQQRRVSFAVSLIHDPKILILDEPTVGLD 143
GG Q++ A L+ +P++LILDEPT G+D
Sbjct: 406 GGNQQKAVLAKMLLTNPRVLILDEPTRGVD 435
Score = 31.3 bits (71), Expect = 0.16
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 114 GGQQRRVSFAVSLIHDPKILILDEPTVGL 142
GGQQ+ V A +L ++LILDEP+ L
Sbjct: 144 GGQQQLVEIAKALNKQARLLILDEPSSSL 172
>gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 282
Score = 39.4 bits (92), Expect = 2e-04
Identities = 18/31 (58%), Positives = 23/31 (74%)
Query: 114 GGQQRRVSFAVSLIHDPKILILDEPTVGLDP 144
GGQ++RV+ A L +PKI+ILDE T LDP
Sbjct: 146 GGQKQRVAIAGILAVEPKIIILDESTSMLDP 176
>gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding
protein; Provisional.
Length = 265
Score = 39.2 bits (91), Expect = 3e-04
Identities = 36/153 (23%), Positives = 63/153 (41%), Gaps = 15/153 (9%)
Query: 6 ASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMP---Q 62
A +L I ++GP+GCGK+TLL + + HG + L ++ +
Sbjct: 23 AENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARR 82
Query: 63 VGLMRSGALLAEDSPSYLLEYYNCSTLEDVFLYLCEQDQ------------ILFSLVGSE 110
+GL+ A D L + +F ++D+ + +
Sbjct: 83 IGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVD 142
Query: 111 SAFGGQQRRVSFAVSLIHDPKILILDEPTVGLD 143
+ GGQ++R A+ L + I++LDEPT LD
Sbjct: 143 TLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLD 175
>gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component;
Provisional.
Length = 330
Score = 38.9 bits (91), Expect = 3e-04
Identities = 16/30 (53%), Positives = 22/30 (73%)
Query: 114 GGQQRRVSFAVSLIHDPKILILDEPTVGLD 143
GG ++RV A++L+ PK+LI DEPT LD
Sbjct: 164 GGMRQRVMIAMALLCRPKLLIADEPTTALD 193
>gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 279
Score = 38.9 bits (91), Expect = 4e-04
Identities = 17/31 (54%), Positives = 23/31 (74%)
Query: 114 GGQQRRVSFAVSLIHDPKILILDEPTVGLDP 144
GGQ++RV+ A ++ PKI+ILDE T LDP
Sbjct: 143 GGQKQRVAIAGAVAMRPKIIILDEATSMLDP 173
>gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit;
Provisional.
Length = 343
Score = 39.0 bits (92), Expect = 4e-04
Identities = 16/31 (51%), Positives = 23/31 (74%)
Query: 114 GGQQRRVSFAVSLIHDPKILILDEPTVGLDP 144
GGQ++RV+ A +L +PK+L+ DE T LDP
Sbjct: 143 GGQKQRVAIARALASNPKVLLCDEATSALDP 173
Score = 30.9 bits (71), Expect = 0.17
Identities = 12/22 (54%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
Query: 19 YGLLGPSGCGKTTLLSCIVNRL 40
+G++G SG GK+TL+ CI N L
Sbjct: 34 FGVIGASGAGKSTLIRCI-NLL 54
>gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter
membrane/ATP-binding component; Reviewed.
Length = 588
Score = 39.1 bits (92), Expect = 4e-04
Identities = 41/140 (29%), Positives = 67/140 (47%), Gaps = 20/140 (14%)
Query: 21 LLGPSGCGKTTLL-----------SCIVNRLRLDHGSISLSARTVRDIGYMPQV--GLMR 67
L+GPSG GKT+LL S +N + L + + +G PQ+ G +R
Sbjct: 381 LVGPSGAGKTSLLNALLGFLPYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLR 440
Query: 68 SGALLAEDSPSYLLEYYNCSTLEDVFL--YLCEQDQILFSLVGSESA--FGGQQRRVSFA 123
LL S + LE+ ++ +L Q L + +G ++A GQ +R++ A
Sbjct: 441 DNVLLGNPDAS---DEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALA 497
Query: 124 VSLIHDPKILILDEPTVGLD 143
+L+ ++L+LDEPT LD
Sbjct: 498 RALLQPCQLLLLDEPTASLD 517
>gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 214
Score = 38.7 bits (90), Expect = 4e-04
Identities = 34/135 (25%), Positives = 57/135 (42%), Gaps = 21/135 (15%)
Query: 23 GPSGCGKTTLLSCIVNRLRLDHGSISL------SARTVRDIGYMPQVGLMRSGALLAEDS 76
G +G GKTTLL + L ++ G I + R + Y+ + +++ L ++
Sbjct: 44 GDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYLGHLPGLKAD-LSTLEN 102
Query: 77 PSYLLEYYNC-------STLEDVFLYLCEQDQILFSLVGSESAFGGQQRRVSFAVSLIHD 129
+L + S L V L E +LV SA GQ++R++ A +
Sbjct: 103 LHFLCGLHGRRAKQMPGSALAIVGLAGYED-----TLVRQLSA--GQKKRLALARLWLSP 155
Query: 130 PKILILDEPTVGLDP 144
+ +LDEP LD
Sbjct: 156 APLWLLDEPYANLDL 170
>gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional.
Length = 222
Score = 38.3 bits (89), Expect = 5e-04
Identities = 16/34 (47%), Positives = 24/34 (70%)
Query: 114 GGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLS 147
GG+Q+RV A ++++ P +L+ DEPT LD LS
Sbjct: 140 GGEQQRVGIARAVVNKPAVLLADEPTGNLDDALS 173
>gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter
membrane\ATP-binding components; Provisional.
Length = 592
Score = 38.5 bits (90), Expect = 6e-04
Identities = 39/142 (27%), Positives = 62/142 (43%), Gaps = 24/142 (16%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAEDSPSYL 80
L+G +G GK+TL S ++ L G I L R + + + ++R G + + P L
Sbjct: 372 LVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSH----SVLRQGVAMVQQDPVVL 427
Query: 81 LE-YYNCSTL-----EDVFLYLCEQDQILFSLV-----GSESAFG--------GQQRRVS 121
+ + TL E+ E Q L L G + G GQ++ ++
Sbjct: 428 ADTFLANVTLGRDISEEQVWQALETVQ-LAELARSLPDGLYTPLGEQGNNLSVGQKQLLA 486
Query: 122 FAVSLIHDPKILILDEPTVGLD 143
A L+ P+ILILDE T +D
Sbjct: 487 LARVLVQTPQILILDEATANID 508
>gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional.
Length = 718
Score = 38.7 bits (90), Expect = 6e-04
Identities = 40/135 (29%), Positives = 62/135 (45%), Gaps = 27/135 (20%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVR------------DIGYMPQVGLMRS 68
++GP+G GK+T+L I L+ G++ SA+ VR D+ P + +MR
Sbjct: 540 MVGPNGIGKSTILKLISGELQPSSGTVFRSAK-VRMAVFSQHHVDGLDLSSNPLLYMMRC 598
Query: 69 GALLAEDSPSYLLEYYNCSTLEDVFLYLCEQDQILFSLVGSESAFGGQQRRVSFAVSLIH 128
+ E L + + L L Q +++L G GQ+ RV+FA
Sbjct: 599 FPGVPEQKLRAHLGSFGVTG----NLAL----QPMYTLSG------GQKSRVAFAKITFK 644
Query: 129 DPKILILDEPTVGLD 143
P IL+LDEP+ LD
Sbjct: 645 KPHILLLDEPSNHLD 659
Score = 32.5 bits (74), Expect = 0.064
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 114 GGQQRRVSFAVSLIHDPKILILDEPTVGLD 143
GG + R++ A +L +P +L+LDEPT LD
Sbjct: 347 GGWRMRIALARALFIEPDLLLLDEPTNHLD 376
>gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional.
Length = 1495
Score = 38.4 bits (89), Expect = 6e-04
Identities = 38/144 (26%), Positives = 69/144 (47%), Gaps = 26/144 (18%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV---------RDIGYMPQVGLMRSGA 70
G++G +G GK+++L+ + + L+ G I + V R + +PQ ++ SG
Sbjct: 1266 GVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGT 1325
Query: 71 L------LAEDSPSYLLEYYNCSTLEDVFLYLCEQDQILFSL-----VGSESAFGGQQRR 119
+ +E + + L E + ++DV D+ F L G E+ GQ++
Sbjct: 1326 VRFNIDPFSEHNDADLWEALERAHIKDVI------DRNPFGLDAEVSEGGENFSVGQRQL 1379
Query: 120 VSFAVSLIHDPKILILDEPTVGLD 143
+S A +L+ KIL+LDE T +D
Sbjct: 1380 LSLARALLRRSKILVLDEATASVD 1403
Score = 32.3 bits (73), Expect = 0.092
Identities = 34/130 (26%), Positives = 57/130 (43%), Gaps = 12/130 (9%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVR-DIGYMPQV-----GLMRSGALLAE 74
++G +G GKT+L+S ++ L S+ +R + Y+PQV +R L
Sbjct: 648 IVGGTGEGKTSLISAMLGEL----SHAETSSVVIRGSVAYVPQVSWIFNATVRENILFGS 703
Query: 75 D-SPSYLLEYYNCSTLEDVFLYLCEQDQILFSLVGSESAFGGQQRRVSFAVSLIHDPKIL 133
D + + L+ L +D G + GGQ++RVS A ++ + I
Sbjct: 704 DFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNIS-GGQKQRVSMARAVYSNSDIY 762
Query: 134 ILDEPTVGLD 143
I D+P LD
Sbjct: 763 IFDDPLSALD 772
>gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 269
Score = 38.2 bits (89), Expect = 6e-04
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 114 GGQQRRVSFAVSLIHDPKILILDEPTVGLDP 144
GGQ++RV+ A L +P ++ILDE T LDP
Sbjct: 145 GGQKQRVAIAGVLALNPSVIILDEATSMLDP 175
>gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family.
Members of this protein family have two copies of the
ABC transporter ATP-binding cassette, but are found
outside the common ABC transporter operon structure that
features integral membrane permease proteins and
substrate-binding proteins encoded next to the
ATP-binding cassette (ABC domain) protein. The member
protein ChvD from Agrobacterium tumefaciens was
identified as both a candidate to interact with VirB8,
based on yeast two-hybrid analysis, and as an apparent
regulator of VirG. The general function of this protein
family is unknown.
Length = 552
Score = 38.4 bits (90), Expect = 7e-04
Identities = 39/139 (28%), Positives = 61/139 (43%), Gaps = 30/139 (21%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAEDSPSY 79
G++GP+G GK+TL I + + D G+I + TV+ + Y+ Q R + + +
Sbjct: 352 GVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE-TVK-LAYVDQ---SRDA---LDPNKTV 403
Query: 80 LLEYYNCSTLEDVFL----------YLCE-----QDQILFSLVGSESAFGGQQRRVSFAV 124
+ S D+ Y+ DQ VG S GG++ RV A
Sbjct: 404 ---WEEISGGLDIIQLGKREVPSRAYVGRFNFKGSDQQ--KKVGQLS--GGERNRVHLAK 456
Query: 125 SLIHDPKILILDEPTVGLD 143
+L +L+LDEPT LD
Sbjct: 457 TLKSGGNVLLLDEPTNDLD 475
Score = 38.0 bits (89), Expect = 0.001
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 114 GGQQRRVSFAVSLIHDPKILILDEPTVGLD 143
GG++RRV+ L+ P +L+LDEPT LD
Sbjct: 164 GGERRRVALCRLLLSKPDMLLLDEPTNHLD 193
Score = 27.2 bits (61), Expect = 3.9
Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQ 62
G+LG +G GK+TLL I+ + + + A ++ +GY+PQ
Sbjct: 35 GVLGLNGAGKSTLLR-IMAGVDKEFNGEARPAPGIK-VGYLPQ 75
>gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in
Fe-S cluster assembly, ATPase component. Biosynthesis
of iron-sulfur clusters (Fe-S) depends on multi-protein
systems. The SUF system of E. coli and Erwinia
chrysanthemi is important for Fe-S biogenesis under
stressful conditions. The SUF system is made of six
proteins: SufC is an atypical cytoplasmic ABC-ATPase,
which forms a complex with SufB and SufD; SufA plays the
role of a scaffold protein for assembly of iron-sulfur
clusters and delivery to target proteins; SufS is a
cysteine desulfurase which mobilizes the sulfur atom
from cysteine and provides it to the cluster; SufE has
no associated function yet.
Length = 200
Score = 37.5 bits (88), Expect = 8e-04
Identities = 37/125 (29%), Positives = 51/125 (40%), Gaps = 21/125 (16%)
Query: 21 LLGPSGCGKTTLLSCIVN--RLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAEDSPS 78
L+GP+G GK+TL I+ + + G I DI +P R G LA P
Sbjct: 31 LMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGE---DITDLPPEERARLGIFLAFQYP- 86
Query: 79 YLLEYYNCSTLEDVFLYLCEQDQILFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEP 138
D Y+ E FS GG+++R L+ +P + ILDEP
Sbjct: 87 ---PEIPGVKNADFLRYVNEG----FS--------GGEKKRNEILQLLLLEPDLAILDEP 131
Query: 139 TVGLD 143
GLD
Sbjct: 132 DSGLD 136
>gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter;
Provisional.
Length = 588
Score = 38.0 bits (89), Expect = 9e-04
Identities = 16/30 (53%), Positives = 23/30 (76%)
Query: 114 GGQQRRVSFAVSLIHDPKILILDEPTVGLD 143
GG+++R++ A +L+ DP ILILDE T LD
Sbjct: 474 GGERQRLAIARALLKDPPILILDEATSALD 503
>gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC
transporter, peptidase/ATP-binding protein. This
protein describes a multidomain ABC transporter subunit
that is one of three protein families associated with
some regularity with a distinctive family of putative
bacteriocins. It includes a bacteriocin-processing
peptidase domain at the N-terminus. Model TIGR03793
describes a conserved propeptide region for this
bacteriocin family, unusual because it shows obvious
homology a region of the enzyme nitrile hydratase up to
the classic Gly-Gly cleavage motif. This family is
therefore predicted to be a subunit of a bacteriocin
processing and export system characteristic to this
system that we designate NHLM, Nitrile Hydratase Leader
Microcin [Transport and binding proteins, Amino acids,
peptides and amines, Cellular processes, Biosynthesis of
natural products].
Length = 710
Score = 38.0 bits (89), Expect = 9e-04
Identities = 17/31 (54%), Positives = 23/31 (74%)
Query: 114 GGQQRRVSFAVSLIHDPKILILDEPTVGLDP 144
GGQ++R+ A +L+ +P ILILDE T LDP
Sbjct: 618 GGQRQRLEIARALVRNPSILILDEATSALDP 648
>gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding
protein LsrA; Provisional.
Length = 510
Score = 37.7 bits (88), Expect = 0.001
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 114 GGQQRRVSFAVSLIHDPKILILDEPTVGLD 143
GG Q++V A L P++LI+DEPT G+D
Sbjct: 406 GGNQQKVLIAKCLEASPQLLIVDEPTRGVD 435
Score = 32.7 bits (75), Expect = 0.056
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 126 LIHDPKILILDEPTVGLDPV 145
L+ D +ILILDEPT L P
Sbjct: 155 LMRDSRILILDEPTASLTPA 174
>gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 200
Score = 37.2 bits (86), Expect = 0.001
Identities = 40/145 (27%), Positives = 65/145 (44%), Gaps = 12/145 (8%)
Query: 9 LNTVIFGVTAYGLL---GPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRD--IGYMPQV 63
L + F + A GLL G +G GKTTLL I L + G I ++++ Y Q+
Sbjct: 17 LQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQL 76
Query: 64 GLM--RSGA---LLAEDSPSYLLEYYNCSTLEDVFLYLCEQDQILFSLVGSESAFGGQQR 118
+ RSG L ++ Y + + + L + ++ G S+ GQ+R
Sbjct: 77 CFVGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLIDYPCGLLSS--GQKR 134
Query: 119 RVSFAVSLIHDPKILILDEPTVGLD 143
+V+ + K+ +LDEP V LD
Sbjct: 135 QVALLRLWMSKAKLWLLDEPLVALD 159
>gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding
protein. This model represents LolD, a member of the
ABC transporter family (pfam00005). LolD is involved in
localization of lipoproteins in some bacteria. It works
with a transmembrane protein LolC, which in some species
is a paralogous pair LolC and LolE. Depending on whether
the residue immediately following the new, modified
N-terminal Cys residue, the nascent lipoprotein may be
carried further by LolA and LolB to the outer membrane,
or remain at the inner membrane. The top scoring
proteins excluded by this model include homologs from
the archaeal genus Methanosarcina [Protein fate, Protein
and peptide secretion and trafficking].
Length = 221
Score = 37.3 bits (87), Expect = 0.001
Identities = 13/30 (43%), Positives = 23/30 (76%)
Query: 114 GGQQRRVSFAVSLIHDPKILILDEPTVGLD 143
GG+++RV+ A +L++ P +++ DEPT LD
Sbjct: 144 GGERQRVAIARALVNQPSLVLADEPTGNLD 173
>gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein;
Provisional.
Length = 258
Score = 37.4 bits (87), Expect = 0.001
Identities = 14/32 (43%), Positives = 23/32 (71%)
Query: 114 GGQQRRVSFAVSLIHDPKILILDEPTVGLDPV 145
GGQQ+R+ A ++ +P +L++DEP LDP+
Sbjct: 151 GGQQQRLCIARAIAVEPDVLLMDEPCSALDPI 182
Score = 32.4 bits (74), Expect = 0.066
Identities = 14/25 (56%), Positives = 20/25 (80%), Gaps = 3/25 (12%)
Query: 16 VTAYGLLGPSGCGKTTLLSCIVNRL 40
VTA+ +GPSGCGK+T+L + NR+
Sbjct: 32 VTAF--IGPSGCGKSTVLRTL-NRM 53
>gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter
ATP-binding protein; Provisional.
Length = 491
Score = 37.4 bits (87), Expect = 0.001
Identities = 18/39 (46%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 105 SLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLD 143
+ +GS S GG Q++V L+ P+IL+LDEPT G+D
Sbjct: 387 TQIGSLS--GGNQQKVIIGRWLLTQPEILMLDEPTRGID 423
Score = 30.5 bits (69), Expect = 0.31
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 8/62 (12%)
Query: 1 MADVSAS-----SLNTVIFGV---TAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSAR 52
M+++S S +L+ V V + + L+G +G GK+TLL C+ + D GSI +
Sbjct: 1 MSNISKSFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGK 60
Query: 53 TV 54
+
Sbjct: 61 EI 62
Score = 26.6 bits (59), Expect = 6.5
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 116 QQRRVSFAVSLIHDPKILILDEPTVGL 142
Q + + A + ++ KI+I+DEPT L
Sbjct: 139 QMQMIEIAKAFSYNAKIVIMDEPTSSL 165
>gnl|CDD|213207 cd03240, ABC_Rad50, ATP-binding cassette domain of Rad50. The
catalytic domains of Rad50 are similar to the
ATP-binding cassette of ABC transporters, but are not
associated with membrane-spanning domains. The conserved
ATP-binding motifs common to Rad50 and the ABC
transporter family include the Walker A and Walker B
motifs, the Q loop, a histidine residue in the switch
region, a D-loop, and a conserved LSGG sequence. This
conserved sequence, LSGG, is the most specific and
characteristic motif of this family and is thus known as
the ABC signature sequence.
Length = 204
Score = 36.8 bits (86), Expect = 0.002
Identities = 32/149 (21%), Positives = 51/149 (34%), Gaps = 36/149 (24%)
Query: 15 GVTAYGLLGPSGCGKTTLLSCIV--------NRLRLDHGSISLSARTVRDIGYMPQVGLM 66
+T ++G +G GKTT++ + + L R QV L
Sbjct: 23 PLTL--IVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKL-IREGEVRA---QVKLA 76
Query: 67 RSGALLAEDSPSYLLEYYNCSTLEDVFLY--LCEQDQI---LFSLVGSESAFGGQQR--- 118
A + Y + + C Q + L + G S GG++
Sbjct: 77 FENANGKK---------YTITRSLAILENVIFCHQGESNWPLLDMRGRCS--GGEKVLAS 125
Query: 119 ---RVSFAVSLIHDPKILILDEPTVGLDP 144
R++ A + + IL LDEPT LD
Sbjct: 126 LIIRLALAETFGSNCGILALDEPTTNLDE 154
>gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit;
Provisional.
Length = 326
Score = 37.0 bits (86), Expect = 0.002
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 114 GGQQRRVSFAVSLIHDPKILILDEPTVGLD 143
GG +RV A+++ PK+LI DEPT LD
Sbjct: 156 GGMSQRVMIAMAIACRPKLLIADEPTTALD 185
>gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of
multidrug resistance-associated protein. The ABC
subfamily C is also known as MRP (multidrug
resistance-associated protein). Some of the MRP members
have five additional transmembrane segments in their
N-terminus, but the function of these additional
membrane-spanning domains is not clear. The MRP was
found in the multidrug-resistance lung cancer cell in
which p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions, such as
glutathione, glucuronate, and sulfate.
Length = 221
Score = 36.7 bits (86), Expect = 0.002
Identities = 37/141 (26%), Positives = 61/141 (43%), Gaps = 18/141 (12%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSI--------SLSARTVRD-IGYMPQVGLMRSGA 70
G++G +G GK++LL + + L GSI + +R I +PQ ++ SG
Sbjct: 34 GIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRISIIPQDPVLFSGT 93
Query: 71 L------LAEDSPSYLLEYYNCSTLEDVFLYLCEQDQILFSLVGSE-SAFGGQQRRVSFA 123
+ E S L + L++ L + G S GQ++ + A
Sbjct: 94 IRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSV--GQRQLLCLA 151
Query: 124 VSLIHDPKILILDEPTVGLDP 144
+L+ KIL+LDE T +DP
Sbjct: 152 RALLRKSKILVLDEATASVDP 172
>gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein;
Provisional.
Length = 582
Score = 36.9 bits (86), Expect = 0.002
Identities = 16/30 (53%), Positives = 22/30 (73%)
Query: 114 GGQQRRVSFAVSLIHDPKILILDEPTVGLD 143
GGQ++R++ A +L+ D ILILDE T LD
Sbjct: 483 GGQRQRIAIARALLRDSPILILDEATSALD 512
>gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase
component [Coenzyme metabolism].
Length = 248
Score = 36.4 bits (84), Expect = 0.002
Identities = 34/139 (24%), Positives = 58/139 (41%), Gaps = 20/139 (14%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAE-DSPS- 78
L+GP+G GK+TLL+ + GSI + + + L R A L++ +P
Sbjct: 30 LVGPNGAGKSTLLARMAGMTSGS-GSIQFAG---QPLEAWSATELARHRAYLSQQQTPPF 85
Query: 79 ------YLLEYYNCSTLEDVFLYLCEQDQILFSLVGSESAF-GGQQRRVSFAVSLIH--- 128
YL + T ++ + + L S + GG+ +RV A ++
Sbjct: 86 AMPVWHYLTLHQPDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITP 145
Query: 129 ----DPKILILDEPTVGLD 143
++L+LDEP LD
Sbjct: 146 DANPAGQLLLLDEPMNSLD 164
>gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease
protein; Provisional.
Length = 648
Score = 36.6 bits (85), Expect = 0.003
Identities = 15/30 (50%), Positives = 23/30 (76%)
Query: 114 GGQQRRVSFAVSLIHDPKILILDEPTVGLD 143
GGQQ+RVS A +L++ ++++ DEPT LD
Sbjct: 147 GGQQQRVSIARALMNGGQVILADEPTGALD 176
>gnl|CDD|238026 cd00071, GMPK, Guanosine monophosphate kinase (GMPK, EC 2.7.4.8),
also known as guanylate kinase (GKase), catalyzes the
reversible phosphoryl transfer from adenosine
triphosphate (ATP) to guanosine monophosphate (GMP) to
yield adenosine diphosphate (ADP) and guanosine
diphosphate (GDP). It plays an essential role in the
biosynthesis of guanosine triphosphate (GTP). This
enzyme is also important for the activation of some
antiviral and anticancer agents, such as acyclovir,
ganciclovir, carbovir, and thiopurines.
Length = 137
Score = 35.2 bits (82), Expect = 0.003
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHG-SISLSARTVR 55
L GPSG GK+TLL ++ + G S+S + R R
Sbjct: 4 LSGPSGVGKSTLLKRLLEEFDPNFGFSVSHTTRKPR 39
>gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional.
Length = 1560
Score = 36.3 bits (84), Expect = 0.004
Identities = 36/136 (26%), Positives = 61/136 (44%), Gaps = 25/136 (18%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQV-----GLMRSGAL-LAE 74
+LG +G GK+TLL ++++ + G + R I Y+PQ +R L E
Sbjct: 691 VLGATGSGKSTLLQSLLSQFEISEGRVWAE----RSIAYVPQQAWIMNATVRGNILFFDE 746
Query: 75 DSPSYLLEYYNCSTLE-DVFLYLCEQDQILFSLVGSE------SAFGGQQRRVSFAVSLI 127
+ + L + S LE D+ L + +E + GGQ+ RVS A ++
Sbjct: 747 EDAARLADAVRVSQLEADL--------AQLGGGLETEIGEKGVNLSGGQKARVSLARAVY 798
Query: 128 HDPKILILDEPTVGLD 143
+ + +LD+P LD
Sbjct: 799 ANRDVYLLDDPLSALD 814
>gnl|CDD|180696 PRK06793, fliI, flagellum-specific ATP synthase; Validated.
Length = 432
Score = 36.1 bits (83), Expect = 0.004
Identities = 29/110 (26%), Positives = 49/110 (44%), Gaps = 5/110 (4%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISL---SARTVRDI--GYMPQVGLMRSGALLAE 74
G+ SG GK+TLL I + D ISL R V+D + + G+ +S ++A
Sbjct: 160 GIFAGSGVGKSTLLGMIAKNAKADINVISLVGERGREVKDFIRKELGEEGMRKSVVVVAT 219
Query: 75 DSPSYLLEYYNCSTLEDVFLYLCEQDQILFSLVGSESAFGGQQRRVSFAV 124
S+L++ + Y +Q + ++ S + F +R V AV
Sbjct: 220 SDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSVTRFADARRSVDIAV 269
>gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding
subunit; Provisional.
Length = 356
Score = 36.0 bits (84), Expect = 0.004
Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 7/44 (15%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV-------RDI 57
L+GPSGCGK+TLL + R+ G I + R V RDI
Sbjct: 35 LVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDI 78
Score = 29.0 bits (66), Expect = 0.91
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 114 GGQQRRVSFAVSLIHDPKILILDEPTVGLD 143
GGQ++RV+ +++ +P + + DEP LD
Sbjct: 137 GGQRQRVAMGRAIVREPAVFLFDEPLSNLD 166
>gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems,
ATPase components [General function prediction only].
Length = 501
Score = 36.0 bits (84), Expect = 0.004
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 115 GQQRRVSFAVSLIHDPKILILDEPTVGLDP 144
G+Q+RV +L ++LILDEPT L P
Sbjct: 144 GEQQRVEILKALYRGARLLILDEPTAVLTP 173
Score = 34.1 bits (79), Expect = 0.016
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 114 GGQQRRVSFAVSLIHDPKILILDEPTVGLD 143
GG Q+++ A L P +LI +PT GLD
Sbjct: 406 GGNQQKLILARELARRPDLLIAAQPTRGLD 435
Score = 32.1 bits (74), Expect = 0.092
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVR 55
LLG +G GK+TL+ + + D G I + + VR
Sbjct: 34 ALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVR 69
>gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein;
Reviewed.
Length = 556
Score = 35.9 bits (84), Expect = 0.004
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 114 GGQQRRVSFAVSLIHDPKILILDEPTVGLD 143
GG++RRV+ L+ P +L+LDEPT LD
Sbjct: 166 GGERRRVALCRLLLEKPDMLLLDEPTNHLD 195
Score = 33.6 bits (78), Expect = 0.024
Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQ 62
G++GP+G GK+TL I + + D G+I + TV+ + Y+ Q
Sbjct: 354 GIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE-TVK-LAYVDQ 394
Score = 27.8 bits (63), Expect = 2.1
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 107 VGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLD 143
VG S GG++ R+ A +L +L+LDEPT LD
Sbjct: 443 VGVLS--GGERNRLHLAKTLKQGGNVLLLDEPTNDLD 477
Score = 27.4 bits (62), Expect = 3.4
Identities = 9/14 (64%), Positives = 12/14 (85%)
Query: 20 GLLGPSGCGKTTLL 33
G+LG +G GK+TLL
Sbjct: 37 GVLGLNGAGKSTLL 50
>gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding
protein. Members of this protein family are the
ATP-binding subunit of a three-protein transporter. This
family belongs, more broadly, to the family of proline
and glycine-betaine transporters, but members have been
identified by direct characterization and by
bioinformatic means as choline transporters. Many
species have several closely-related members of this
family, probably with variable abilities to act
additionally on related quaternary amines [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 382
Score = 35.5 bits (82), Expect = 0.006
Identities = 45/149 (30%), Positives = 66/149 (44%), Gaps = 27/149 (18%)
Query: 21 LLGPSGCGKTTLLSCIVNRL--------RLDHGSISL-----SARTVRDIGYMPQVGLM- 66
L+G SG GK+TLL VN L + G S+ A T+R + +V ++
Sbjct: 55 LMGLSGSGKSTLLRA-VNGLNPVSRGSVLVKDGDGSVDVANCDAATLRRL-RTHRVSMVF 112
Query: 67 RSGALL----AEDSPSYLLEYYNCSTLE-----DVFLYLCEQDQILFSLVGSESAFGGQQ 117
+ ALL E++ ++ LE E D L L Q G S GG Q
Sbjct: 113 QQFALLPWRTVEENVAFGLEMQGMPKAERRKRVDEQLELVGLAQWADRKPGELS--GGMQ 170
Query: 118 RRVSFAVSLIHDPKILILDEPTVGLDPVL 146
+RV A + + IL++DEP LDP++
Sbjct: 171 QRVGLARAFATEAPILLMDEPFSALDPLI 199
>gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 267
Score = 35.2 bits (81), Expect = 0.006
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 115 GQQRRVSFAVSLIHDPKILILDEPTVGLD 143
GQ++RV+ A +LI PKI+I DE LD
Sbjct: 153 GQKQRVALARALILRPKIIIADEALASLD 181
>gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding
protein; Provisional.
Length = 369
Score = 35.4 bits (82), Expect = 0.006
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 114 GGQQRRVSFAVSLIHDPKILILDEPTVGLDPVL 146
GGQ++RV+ +L+ +P + +LDEP LD L
Sbjct: 136 GGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAAL 168
Score = 35.0 bits (81), Expect = 0.009
Identities = 11/14 (78%), Positives = 12/14 (85%)
Query: 23 GPSGCGKTTLLSCI 36
GPSGCGK+TLL I
Sbjct: 36 GPSGCGKSTLLRMI 49
>gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter
membrane\ATP-binding components; Provisional.
Length = 569
Score = 35.5 bits (82), Expect = 0.007
Identities = 36/147 (24%), Positives = 54/147 (36%), Gaps = 43/147 (29%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDI------------GYMP------ 61
G+ GP+G GK+TLLS I + G I + + P
Sbjct: 345 GICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDT 404
Query: 62 ---QVGLMRSGALLAEDSPSYLLEYYNCSTLEDVFLYLCEQDQILFSLVGSESAF----- 113
+ L R A E +E V D IL G ++
Sbjct: 405 VANNIALGRPDATQQE--------------IEHVARLASVHDDILRLPQGYDTEVGERGV 450
Query: 114 ---GGQQRRVSFAVSLIHDPKILILDE 137
GGQ++R+S A +L+ + +ILILD+
Sbjct: 451 MLSGGQKQRISIARALLLNAEILILDD 477
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 908
Score = 35.1 bits (81), Expect = 0.009
Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 8/39 (20%)
Query: 114 GGQQRRVSFAVSL------IHDPKI--LILDEPTVGLDP 144
GG++ S A+ L ++ L LDEP LD
Sbjct: 818 GGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDE 856
Score = 28.2 bits (63), Expect = 2.2
Identities = 8/22 (36%), Positives = 15/22 (68%), Gaps = 2/22 (9%)
Query: 15 GVTAYGLLGPSGCGKTTLLSCI 36
G+ ++GP+G GK+++L I
Sbjct: 26 GIFL--IVGPNGAGKSSILDAI 45
>gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein
YbbA; Provisional.
Length = 228
Score = 34.4 bits (79), Expect = 0.011
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 114 GGQQRRVSFAVSLIHDPKILILDEPTVGLD 143
GG+Q+RV+ A + P +L DEPT LD
Sbjct: 149 GGEQQRVALARAFNGRPDVLFADEPTGNLD 178
>gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein;
Provisional.
Length = 510
Score = 34.8 bits (80), Expect = 0.011
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 114 GGQQRRVSFAVSLIHDPKILILDEPTVGLD 143
GG Q++V + L P+++I DEPT G+D
Sbjct: 412 GGNQQKVLISKWLCCCPEVIIFDEPTRGID 441
Score = 28.6 bits (64), Expect = 1.4
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 116 QQRRVSFAVSLIHDPKILILDEPTVGL 142
++ + A +L+ D K++I+DEPT L
Sbjct: 150 HKQMLEIAKTLMLDAKVIIMDEPTSSL 176
>gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport
system, ATPase component [Carbohydrate transport and
metabolism / Cell envelope biogenesis, outer membrane].
Length = 249
Score = 34.5 bits (80), Expect = 0.011
Identities = 31/131 (23%), Positives = 56/131 (42%), Gaps = 27/131 (20%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVR----DIGYMPQ---------VGLM 66
G++G +G GK+TLL I + G + ++ + G+ P+ GL+
Sbjct: 57 GIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIELGAGFDPELTGRENIYLRGLI 116
Query: 67 RSGALLAEDSPSYLLEYYNCSTLEDVFLYLCEQDQILFSLVGSESAFGGQQRRVSFAVSL 126
L ++ + E + L D F+ V + S+ G R++F+V+
Sbjct: 117 L--GLTRKEIDEKVDEIIEFAELGD-FIDQ---------PVKTYSS--GMYARLAFSVAT 162
Query: 127 IHDPKILILDE 137
+P IL+LDE
Sbjct: 163 HVEPDILLLDE 173
>gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit;
Provisional.
Length = 233
Score = 34.4 bits (79), Expect = 0.011
Identities = 13/30 (43%), Positives = 25/30 (83%)
Query: 114 GGQQRRVSFAVSLIHDPKILILDEPTVGLD 143
GG+++RV+ A +L+++P++++ DEPT LD
Sbjct: 148 GGERQRVAIARALVNNPRLVLADEPTGNLD 177
>gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT)
Family protei. [Transport and binding proteins,
Carbohydrates, organic alcohols, and acids].
Length = 659
Score = 34.7 bits (80), Expect = 0.013
Identities = 34/131 (25%), Positives = 57/131 (43%), Gaps = 15/131 (11%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGAL----LAEDS 76
+ GP+GCGK++L + + G ++ A+ + Y+PQ M G L + DS
Sbjct: 483 ICGPNGCGKSSLFRILGELWPVYGGRLTKPAKG--KLFYVPQRPYMTLGTLRDQIIYPDS 540
Query: 77 PSYLLEY-YNCSTLEDVFLYLCEQDQILFSLVG-------SESAFGGQQRRVSFAVSLIH 128
+ + LE + L + IL G + GG+++R++ A H
Sbjct: 541 SEDMKRRGLSDKDLEQI-LDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYH 599
Query: 129 DPKILILDEPT 139
P+ ILDE T
Sbjct: 600 KPQFAILDECT 610
>gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein;
Provisional.
Length = 623
Score = 34.4 bits (79), Expect = 0.013
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 114 GGQQRRVSFAVSLIHDPKILILDEPTVGLD 143
GG ++RV A++L P +LI DEPT LD
Sbjct: 171 GGMRQRVMIAMALSCRPAVLIADEPTTALD 200
Score = 31.4 bits (71), Expect = 0.15
Identities = 40/155 (25%), Positives = 61/155 (39%), Gaps = 46/155 (29%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV------------RDIGYMPQ------ 62
L+G SG GK+T ++ + G I + + + RDI ++ Q
Sbjct: 355 LVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASL 414
Query: 63 -----VGL-----MRSGALL----AEDSPSYLLEYYNCSTLEDVFLYLCEQDQILFSLVG 108
VG +R LL A ++LLE E + Y E FS
Sbjct: 415 DPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLP-EHAWRYPHE-----FS--- 465
Query: 109 SESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLD 143
GGQ++R+ A +L +PK++I DE LD
Sbjct: 466 -----GGQRQRICIARALALNPKVIIADEAVSALD 495
>gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding
protein UrtD. Members of this protein family are ABC
transporter ATP-binding subunits associated with urea
transport and metabolism. This protein is found in a
conserved five-gene transport operon typically found
adjacent to urease genes. It was shown in Cyanobacteria
that disruption leads to the loss of high-affinity urea
transport activity [Transport and binding proteins,
Amino acids, peptides and amines].
Length = 242
Score = 34.1 bits (79), Expect = 0.013
Identities = 37/148 (25%), Positives = 65/148 (43%), Gaps = 32/148 (21%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAEDSPSYL 80
++GP+G GKTT++ I + R D GS+ D+ +P+ + R+G P+
Sbjct: 33 IIGPNGAGKTTMMDVITGKTRPDEGSVLFGG---TDLTGLPEHQIARAGIGRKFQKPTV- 88
Query: 81 LEYYNCSTLEDVFLYLC----------------EQDQI--------LFSLVGSESAF--G 114
+ N + E++ L L E+D+I L +
Sbjct: 89 --FENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSH 146
Query: 115 GQQRRVSFAVSLIHDPKILILDEPTVGL 142
GQ++ + + L+ DPK+L+LDEP G+
Sbjct: 147 GQKQWLEIGMLLMQDPKLLLLDEPVAGM 174
>gnl|CDD|99707 cd00009, AAA, The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase
fold. The ASCE division also includes ABC, RecA-like,
VirD4-like, PilT-like, and SF1/2 helicases. Members of
the AAA+ ATPases function as molecular chaperons,
ATPase subunits of proteases, helicases, or
nucleic-acid stimulated ATPases. The AAA+ proteins
contain several distinct features in addition to the
conserved alpha-beta-alpha core domain structure and
the Walker A and B motifs of the P-loop NTPases.
Length = 151
Score = 33.7 bits (77), Expect = 0.014
Identities = 12/20 (60%), Positives = 12/20 (60%)
Query: 21 LLGPSGCGKTTLLSCIVNRL 40
L GP G GKTTL I N L
Sbjct: 24 LYGPPGTGKTTLARAIANEL 43
>gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 277
Score = 33.9 bits (77), Expect = 0.017
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 114 GGQQRRVSFAVSLIHDPKILILDEPTVGLDP 144
GGQ++RV+ A + P+I+ILDE T LDP
Sbjct: 143 GGQKQRVAVAGIIALRPEIIILDESTSMLDP 173
>gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the
sulfonylurea receptor, subfamily C. The SUR domain 1.
The sulfonylurea receptor SUR is an ATP transporter of
the ABCC/MRP family with tandem ATPase binding domains.
Unlike other ABC proteins, it has no intrinsic transport
function, neither active nor passive, but associates
with the potassium channel proteins Kir6.1 or Kir6.2 to
form the ATP-sensitive potassium (K(ATP)) channel.
Within the channel complex, SUR serves as a regulatory
subunit that fine-tunes the gating of Kir6.x in response
to alterations in cellular metabolism. It constitutes a
major pharmaceutical target as it binds numerous drugs,
K(ATP) channel openers and blockers, capable of up- or
down-regulating channel activity.
Length = 218
Score = 33.8 bits (77), Expect = 0.019
Identities = 38/148 (25%), Positives = 60/148 (40%), Gaps = 24/148 (16%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAEDSPSYL 80
++G GCGK++LL I+ ++ G + S + + + R A P +L
Sbjct: 32 IVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKP-WL 90
Query: 81 L----------------EYYN-----CSTLEDVFLYLCEQDQILFSLVGSESAFGGQQRR 119
L + Y CS D+ L L DQ G + GGQ++R
Sbjct: 91 LNATVEENITFGSPFNKQRYKAVTDACSLQPDIDL-LPFGDQTEIGERGINLS-GGQRQR 148
Query: 120 VSFAVSLIHDPKILILDEPTVGLDPVLS 147
+ A +L + I+ LD+P LD LS
Sbjct: 149 ICVARALYQNTNIVFLDDPFSALDIHLS 176
>gnl|CDD|223272 COG0194, Gmk, Guanylate kinase [Nucleotide transport and
metabolism].
Length = 191
Score = 33.7 bits (78), Expect = 0.020
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRD 56
L GPSG GK+TL+ ++ +L S+S + R R
Sbjct: 9 LSGPSGVGKSTLVKALLEDDKL-RFSVSATTRKPRP 43
>gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase
[Posttranslational modification, protein turnover,
chaperones].
Length = 251
Score = 33.7 bits (78), Expect = 0.020
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 114 GGQQRRVSFAVSLIHDPKILILDEPTVGLD 143
GG+++R L+ +PK+ ILDEP GLD
Sbjct: 147 GGEKKRNEILQLLLLEPKLAILDEPDSGLD 176
>gnl|CDD|227519 COG5192, BMS1, GTP-binding protein required for 40S ribosome
biogenesis [Translation, ribosomal structure and
biogenesis].
Length = 1077
Score = 33.9 bits (77), Expect = 0.021
Identities = 27/120 (22%), Positives = 49/120 (40%), Gaps = 33/120 (27%)
Query: 21 LLGPSGCGKTTLLSCIVNRLR---LDH--GSISLSARTVRDIGYMPQVGLMRSGALLAED 75
++GP G GK+TL+ +V R +D G I++ + R I ++ +
Sbjct: 74 VVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPITVVSGKTRRITFL--------------E 119
Query: 76 SPSYLLEYYNCSTLEDVFLYLCEQDQILFSLVGSESAFGGQQRRVSFAVSLIHD--PKIL 133
PS L + + + + D+ L L + FG + + F LI P++L
Sbjct: 120 CPSDLHQMIDVAKIADLVLLLI------------DGNFGFEMETMEFLNILISHGMPRVL 167
>gnl|CDD|234719 PRK00300, gmk, guanylate kinase; Provisional.
Length = 205
Score = 33.5 bits (78), Expect = 0.024
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 8/35 (22%)
Query: 20 GLL----GPSGCGKTTLLSCIVNRLRLDHGSISLS 50
GLL GPSG GK+TL V L ++ LS
Sbjct: 5 GLLIVLSGPSGAGKSTL----VKALLERDPNLQLS 35
>gnl|CDD|217416 pfam03193, DUF258, Protein of unknown function, DUF258.
Length = 161
Score = 32.9 bits (76), Expect = 0.028
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSIS 48
L G SG GK+TLL+ ++ L L G IS
Sbjct: 40 LAGQSGVGKSTLLNALLPELDLRTGEIS 67
>gnl|CDD|226639 COG4170, SapD, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 330
Score = 33.3 bits (76), Expect = 0.030
Identities = 12/31 (38%), Positives = 22/31 (70%)
Query: 115 GQQRRVSFAVSLIHDPKILILDEPTVGLDPV 145
G+ ++V A++L + P++LI DEPT ++P
Sbjct: 162 GECQKVMIAIALANQPRLLIADEPTNSMEPT 192
>gnl|CDD|222036 pfam13304, AAA_21, AAA domain.
Length = 256
Score = 32.8 bits (74), Expect = 0.039
Identities = 11/35 (31%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Query: 115 GQQRRVSFAVSLI---HDPKILILDEPTVGLDPVL 146
G +R ++ ++L+ +L++DEP GL P L
Sbjct: 193 GTKRLLALLLALLSALPKGSLLLIDEPENGLHPKL 227
Score = 27.4 bits (60), Expect = 2.8
Identities = 12/42 (28%), Positives = 20/42 (47%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMP 61
++GP+G GK+ LL + L L ++L I +P
Sbjct: 3 VIIGPNGSGKSNLLKALALLLLLLSLGLTLDRGLNVGIKLLP 44
>gnl|CDD|213350 cd12790, RasGAP_plexin_A, Ras-GTPase Activating Domain of type A
plexins. Plexins form a conserved family of
transmembrane receptors for semaphorins and may be the
ancestors of semaphorins. They are divided into four
types (A-D) according to sequence similarity. In
vertebrates, there are four type A plexins (A1-A4) that
serve as the co-receptors for neuropilins to mediate the
signaling of class 3 semaphorins except Sema3E, which
signals through Plexin-D1. Plexins serve as direct
receptors for several other members of the semaphorin
family: class 1 and class 6 semaphorins signal through
type A plexins, which mediate diverse biological
functions including axon guidance, cardiovascular
development, and immune function. Guanylyl cyclase
Gyc76C and Off-track kinase (OTK), a putative receptor
tyrosine kinase, modulate Sema1a and Plexin-A mediated
axon repulsion. In their complex with Sema6s, type A
plexins serve as signal-transducing subunits. An
increasing number of molecules that interact with the
intracellular region of Plexin-A have been identified;
among them are IgCAMs (in axon guidance events) and
Trem2-DAP12 (in immune responses). Plexins contain a
C-terminal RasGAP domain, which functions as an enhancer
of the hydrolysis of GTP that is bound to Ras-GTPases.
Plexins display GAP activity towards the Ras homolog
Rap. Although the Rho (Ras homolog) GTPases are most
closely related to members of the Ras family, RhoGAP and
RasGAP show no sequence homology at their amino acid
level. RasGTPases function as molecular switches in a
large number of of signaling pathways. When bound to GTP
they are in the on state and when bound to GDP they are
in the off state. The RasGAP domain speeds up the
hydrolysis of GTP in Ras-like proteins acting as a
negative regulator.
Length = 385
Score = 32.8 bits (75), Expect = 0.045
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 51 ARTVRDIGYMPQVGLMRSGALLAEDSPSYLLEYYNCSTLEDVFLYLCE-QDQILFSLVGS 109
R DI MP + A LAE S +L E+ S L +++ Y+ + +++IL +L
Sbjct: 309 ERYYADIAKMPAISDQDMNAYLAEQSRLHLNEFNTLSALNELYSYVTKYKEEILTAL--E 366
Query: 110 ESAFGGQQR 118
E F +QR
Sbjct: 367 EDEFARKQR 375
>gnl|CDD|235871 PRK06835, PRK06835, DNA replication protein DnaC; Validated.
Length = 329
Score = 32.9 bits (76), Expect = 0.046
Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 23 GPSGCGKTTLLSCIVNRLRLDHG 45
G +G GKT L +CI L LD G
Sbjct: 190 GNTGTGKTFLSNCIAKEL-LDRG 211
>gnl|CDD|216619 pfam01637, Arch_ATPase, Archaeal ATPase. This family contain a
conserved P-loop motif that is involved in binding ATP.
This family is almost exclusively found in
archaebacteria and particularly in Methanococcus
jannaschii that encodes sixteen members of this family.
Length = 223
Score = 32.6 bits (75), Expect = 0.051
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 21 LLGPSGCGKTTLLSCIVNRLR 41
+ GP CGKT LL + LR
Sbjct: 25 VYGPRRCGKTALLREFLEELR 45
>gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase
L inhibitor. The ABC ATPase RNase L inhibitor (RLI) is
a key enzyme in ribosomal biogenesis, formation of
translation preinitiation complexes, and assembly of HIV
capsids. RLI's are not transport proteins, and thus
cluster with a group of soluble proteins that lack the
transmembrane components commonly found in other members
of the family. Structurally, RLI's have an N-terminal
Fe-S domain and two nucleotide-binding domains, which
are arranged to form two composite active sites in their
interface cleft. RLI is one of the most conserved
enzymes between archaea and eukaryotes with a sequence
identity more than 48%. The high degree of evolutionary
conservation suggests that RLI performs a central role
in archaeal and eukaryotic physiology.
Length = 177
Score = 32.2 bits (73), Expect = 0.052
Identities = 26/124 (20%), Positives = 43/124 (34%), Gaps = 49/124 (39%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAEDSPSY 79
G++GP+G GKTT + + +L + + T Y PQ
Sbjct: 29 GIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGIT---PVYKPQ----------------- 68
Query: 80 LLEYYNCSTLEDVFLYLCEQDQILFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPT 139
Y + S GG+ +RV+ A +L+ + + DEP+
Sbjct: 69 ---YIDLS--------------------------GGELQRVAIAAALLRNATFYLFDEPS 99
Query: 140 VGLD 143
LD
Sbjct: 100 AYLD 103
>gnl|CDD|215651 pfam00006, ATP-synt_ab, ATP synthase alpha/beta family,
nucleotide-binding domain. This family includes the
ATP synthase alpha and beta subunits, the ATP synthase
associated with flagella and the termination factor
Rho.
Length = 213
Score = 32.4 bits (75), Expect = 0.053
Identities = 16/54 (29%), Positives = 20/54 (37%), Gaps = 5/54 (9%)
Query: 8 SLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDH----GSISLSARTVRDI 57
L + G G+ G SG GKT LL I + D I R V +
Sbjct: 8 LLLPIGKGQRI-GIFGGSGTGKTVLLGMIARNAKADVVEVYVLIGERGREVAEF 60
>gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding
subunit; Provisional.
Length = 400
Score = 32.7 bits (74), Expect = 0.053
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 114 GGQQRRVSFAVSLIHDPKILILDEPTVGLDPVL 146
GG ++RV A +L +P IL++DE LDP++
Sbjct: 167 GGMRQRVGLARALAINPDILLMDEAFSALDPLI 199
>gnl|CDD|222160 pfam13476, AAA_23, AAA domain.
Length = 204
Score = 32.1 bits (73), Expect = 0.056
Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 2/22 (9%)
Query: 15 GVTAYGLLGPSGCGKTTLLSCI 36
G+T + GP+G GKTT+L I
Sbjct: 20 GLTL--IYGPNGSGKTTILDAI 39
>gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision
repair protein UvrA. Nucleotide excision repair in
eubacteria is a process that repairs DNA damage by the
removal of a 12-13-mer oligonucleotide containing the
lesion. Recognition and cleavage of the damaged DNA is a
multistep ATP-dependent reaction that requires the UvrA,
UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases,
with UvrA having two ATP binding sites, which have the
characteristic signature of the family of ABC proteins,
and UvrB having one ATP binding site that is
structurally related to that of helicases.
Length = 176
Score = 32.3 bits (74), Expect = 0.058
Identities = 36/135 (26%), Positives = 49/135 (36%), Gaps = 36/135 (26%)
Query: 12 VIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGAL 71
V+ VT G SG GK+TL+ + S AR + + + L+ L
Sbjct: 22 VLVVVT-----GVSGSGKSTLV--------NEGLYASGKARLISFLPKFSRNKLIFIDQL 68
Query: 72 LAEDSPSYLLEYYNCSTLEDVFLYLCEQDQILFSLVGSESAFGGQQRRVSFAVSLIHDPK 131
L DV L Q L +L G E +RV A L +P
Sbjct: 69 ---------------QFLIDVGLGYLTLGQKLSTLSGGE------LQRVKLASELFSEPP 107
Query: 132 --ILILDEPTVGLDP 144
+ ILDEP+ GL
Sbjct: 108 GTLFILDEPSTGLHQ 122
>gnl|CDD|206747 cd01854, YjeQ_EngC, Ribosomal interacting GTPase YjeQ/EngC, a
circularly permuted subfamily of the Ras GTPases. YjeQ
(YloQ in Bacillus subtilis) is a ribosomal small
subunit-dependent GTPase; hence also known as RsgA. YjeQ
is a late-stage ribosomal biogenesis factor involved in
the 30S subunit maturation, and it represents a protein
family whose members are broadly conserved in bacteria
and have been shown to be essential to the growth of E.
coli and B. subtilis. Proteins of the YjeQ family
contain all sequence motifs typical of the vast class of
P-loop-containing GTPases, but show a circular
permutation, with a G4-G1-G3 pattern of motifs as
opposed to the regular G1-G3-G4 pattern seen in most
GTPases. All YjeQ family proteins display a unique
domain architecture, which includes an N-terminal
OB-fold RNA-binding domain, the central permuted GTPase
domain, and a zinc knuckle-like C-terminal cysteine
domain.
Length = 211
Score = 32.4 bits (75), Expect = 0.060
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSIS 48
L+G SG GK+TLL+ ++ L L G IS
Sbjct: 90 LVGQSGVGKSTLLNALLPELVLATGEIS 117
>gnl|CDD|213788 TIGR03263, guanyl_kin, guanylate kinase. Members of this family
are the enzyme guanylate kinase, also called GMP
kinase. This enzyme transfers a phosphate from ATP to
GMP, yielding ADP and GDP [Purines, pyrimidines,
nucleosides, and nucleotides, Nucleotide and nucleoside
interconversions].
Length = 179
Score = 32.1 bits (74), Expect = 0.067
Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 4/28 (14%)
Query: 23 GPSGCGKTTLLSCIVNRLRLDHGSISLS 50
GPSG GK+TL V L + ++ S
Sbjct: 7 GPSGAGKSTL----VKALLEEDPNLKFS 30
>gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding
subunit; Provisional.
Length = 265
Score = 32.1 bits (73), Expect = 0.070
Identities = 43/160 (26%), Positives = 62/160 (38%), Gaps = 57/160 (35%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV---------RDIGYMPQ-------- 62
GL+G +G GK+TLL + G I L A+ + R + Y+PQ
Sbjct: 41 GLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGM 100
Query: 63 -----VGLMR---SGAL---LAEDSPSYLLEYYNCSTLEDVFLYLCEQDQILFSLVG--- 108
V + R GAL A D E+ + SLVG
Sbjct: 101 TVRELVAIGRYPWHGALGRFGAADR---------------------EKVEEAISLVGLKP 139
Query: 109 -----SESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLD 143
+S GG+++R A+ + D + L+LDEPT LD
Sbjct: 140 LAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALD 179
>gnl|CDD|238835 cd01672, TMPK, Thymidine monophosphate kinase (TMPK), also known
as thymidylate kinase, catalyzes the phosphorylation of
thymidine monophosphate (TMP) to thymidine diphosphate
(TDP) utilizing ATP as its preferred phophoryl donor.
TMPK represents the rate-limiting step in either de
novo or salvage biosynthesis of thymidine triphosphate
(TTP).
Length = 200
Score = 31.9 bits (73), Expect = 0.071
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 23 GPSGCGKTTLLSCIVNRLR 41
G G GKTTL+ + RL
Sbjct: 7 GIDGAGKTTLIELLAERLE 25
>gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional.
Length = 1622
Score = 32.4 bits (74), Expect = 0.073
Identities = 37/141 (26%), Positives = 66/141 (46%), Gaps = 20/141 (14%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYM---------PQVGLMRSGA 70
G++G +G GK+++L+ + + L+ G I + + G M PQ ++ SG
Sbjct: 1269 GIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGT 1328
Query: 71 L------LAEDSPSYLLEYYNCSTLEDVFLYLCEQDQILFSLV--GSESAFGGQQRRVSF 122
+ E + + L E + L+DV + L + V E+ GQ++ +S
Sbjct: 1329 VRFNLDPFNEHNDADLWESLERAHLKDV---IRRNSLGLDAEVSEAGENFSVGQRQLLSL 1385
Query: 123 AVSLIHDPKILILDEPTVGLD 143
A +L+ KIL+LDE T +D
Sbjct: 1386 ARALLRRSKILVLDEATAAVD 1406
Score = 29.7 bits (67), Expect = 0.63
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 114 GGQQRRVSFAVSLIHDPKILILDEPTVGLD 143
GGQ++RVS A ++ + + I D+P LD
Sbjct: 743 GGQKQRVSMARAVYSNSDVYIFDDPLSALD 772
>gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding
protein SapF; Provisional.
Length = 267
Score = 32.1 bits (73), Expect = 0.076
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 115 GQQRRVSFAVSLIHDPKILILDEPTVGLD 143
GQ++R+ A +LI PK++I DE LD
Sbjct: 153 GQKQRLGLARALILRPKVIIADEALASLD 181
>gnl|CDD|234631 PRK00098, PRK00098, GTPase RsgA; Reviewed.
Length = 298
Score = 32.1 bits (74), Expect = 0.084
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSIS 48
L G SG GK+TLL+ + L L G IS
Sbjct: 169 LAGQSGVGKSTLLNALAPDLELKTGEIS 196
>gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter
ATP-binding protein; Provisional.
Length = 330
Score = 32.1 bits (73), Expect = 0.085
Identities = 12/30 (40%), Positives = 22/30 (73%)
Query: 115 GQQRRVSFAVSLIHDPKILILDEPTVGLDP 144
G+ ++V A++L + P++LI DEPT ++P
Sbjct: 162 GECQKVMIAIALANQPRLLIADEPTNAMEP 191
>gnl|CDD|206733 cd04170, EF-G_bact, Elongation factor G (EF-G) family.
Translocation is mediated by EF-G (also called
translocase). The structure of EF-G closely resembles
that of the complex between EF-Tu and tRNA. This is an
example of molecular mimicry; a protein domain evolved
so that it mimics the shape of a tRNA molecule. EF-G in
the GTP form binds to the ribosome, primarily through
the interaction of its EF-Tu-like domain with the 50S
subunit. The binding of EF-G to the ribosome in this
manner stimulates the GTPase activity of EF-G. On GTP
hydrolysis, EF-G undergoes a conformational change that
forces its arm deeper into the A site on the 30S
subunit. To accommodate this domain, the peptidyl-tRNA
in the A site moves to the P site, carrying the mRNA
and the deacylated tRNA with it. The ribosome may be
prepared for these rearrangements by the initial
binding of EF-G as well. The dissociation of EF-G
leaves the ribosome ready to accept the next
aminoacyl-tRNA into the A site. This group contains
only bacterial members.
Length = 268
Score = 31.8 bits (73), Expect = 0.093
Identities = 9/15 (60%), Positives = 10/15 (66%)
Query: 19 YGLLGPSGCGKTTLL 33
L+G SG GKTTL
Sbjct: 2 IALVGHSGSGKTTLA 16
>gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD.
This family represents the NikD subunit of a
multisubunit nickel import ABC transporter complex.
Nickel, once imported, may be used in urease and in
certain classes of hydrogenase and superoxide dismutase.
NikD and NikE are homologous [Transport and binding
proteins, Cations and iron carrying compounds].
Length = 230
Score = 31.6 bits (72), Expect = 0.100
Identities = 40/151 (26%), Positives = 58/151 (38%), Gaps = 36/151 (23%)
Query: 20 GLLGPSGCGKTT----LLSCIVNRLRLDHGSISLSARTV-------RDIGYMPQ------ 62
L+G SG GK+ +L + L G I L R + R I + Q
Sbjct: 16 ALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAF 75
Query: 63 --VGLMRSGA---LLAEDSPS-----YLLEYYNCSTLEDVFLYLCEQDQILFSLVGSESA 112
+ M + A L + S +LE L D +++L S
Sbjct: 76 NPLFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDP-------EEVLKKYPFQLS- 127
Query: 113 FGGQQRRVSFAVSLIHDPKILILDEPTVGLD 143
GG +RV A++L+ +P LI DEPT LD
Sbjct: 128 -GGMLQRVMIALALLLEPPFLIADEPTTDLD 157
>gnl|CDD|221970 pfam13191, AAA_16, AAA ATPase domain. This family of domains
contain a P-loop motif that is characteristic of the
AAA superfamily.
Length = 154
Score = 31.0 bits (70), Expect = 0.12
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSIS 48
L GPSG GKT+LL ++ L + G
Sbjct: 29 LTGPSGTGKTSLLRELLEGLLVAAGKCD 56
>gnl|CDD|216202 pfam00931, NB-ARC, NB-ARC domain.
Length = 285
Score = 31.5 bits (72), Expect = 0.13
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 15 GVTAYGLLGPSGCGKTTLLSCIVNRLRLDHG 45
+ G++G G GKTTL I N +
Sbjct: 18 NLGVVGIVGMGGVGKTTLAKQIYNDDSVGGH 48
>gnl|CDD|223637 COG0563, Adk, Adenylate kinase and related kinases [Nucleotide
transport and metabolism].
Length = 178
Score = 31.1 bits (71), Expect = 0.15
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGS 46
+LGP G GK+TL + +L L H
Sbjct: 5 ILGPPGAGKSTLAKKLAKKLGLPHLD 30
>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins
[General function prediction only].
Length = 219
Score = 31.1 bits (70), Expect = 0.15
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 20 GLLGPSGCGKTTLLSCIVNRL 40
+LG G GKTTLL+ +V
Sbjct: 9 VVLGDGGVGKTTLLNRLVGDE 29
>gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein;
Provisional.
Length = 501
Score = 31.4 bits (72), Expect = 0.16
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 114 GGQQRRVSFAVSLIHDPKILILDEPTVGLD 143
GG Q++ L D K+++LDEPT G+D
Sbjct: 399 GGNQQKAILGRWLSEDMKVILLDEPTRGID 428
Score = 26.8 bits (60), Expect = 4.6
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query: 9 LNTVIFGVTA---YGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVR 55
L+ + F A + L+G +G GK+TLL + + D GSI + + +R
Sbjct: 20 LDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMR 69
>gnl|CDD|224677 COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis
protein [Coenzyme metabolism].
Length = 161
Score = 30.8 bits (70), Expect = 0.16
Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 5/29 (17%)
Query: 13 IFGVTAYGLLGPSGCGKTTLLSCIVNRLR 41
I G+ G GKTTL+ +V +L+
Sbjct: 4 ILGIV-----GYKNSGKTTLIEKLVRKLK 27
>gnl|CDD|151168 pfam10662, PduV-EutP, Ethanolamine utilisation - propanediol
utilisation. Members of this family function in
ethanolamine and propanediol degradation pathways,
however the exact roles of these proteins is poorly
understood.
Length = 143
Score = 30.3 bits (69), Expect = 0.18
Identities = 10/16 (62%), Positives = 12/16 (75%)
Query: 21 LLGPSGCGKTTLLSCI 36
L+G SGCGKTTL +
Sbjct: 6 LIGRSGCGKTTLTQAL 21
>gnl|CDD|225297 COG2453, CDC14, Predicted protein-tyrosine phosphatase [Signal
transduction mechanisms].
Length = 180
Score = 30.9 bits (70), Expect = 0.18
Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 4/35 (11%)
Query: 62 QVGLMRSGALLAEDSPSYLLEYYNCSTLEDVFLYL 96
Q G+ RSG ++A +YL+ Y S ++
Sbjct: 113 QGGIGRSGTVIA----AYLMLYGGLSLADEAIAVK 143
>gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional.
Length = 272
Score = 31.0 bits (70), Expect = 0.19
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 9/39 (23%)
Query: 114 GGQQRRVSFAVSL---------IHDPKILILDEPTVGLD 143
GG+ RV FA L P+ L+LDEPT LD
Sbjct: 148 GGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALD 186
>gnl|CDD|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional.
Length = 895
Score = 31.0 bits (70), Expect = 0.21
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 6/42 (14%)
Query: 108 GSESAFGGQQRRVSFAVS------LIHDPKILILDEPTVGLD 143
G +S GG++ V+FA+ L +D +LI+DEPT LD
Sbjct: 798 GIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLD 839
>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain. Proteins
with a small GTP-binding domain recognized by this
model include Ras, RhoA, Rab11, translation elongation
factor G, translation initiation factor IF-2,
tetratcycline resistance protein TetM, CDC42, Era,
ADP-ribosylation factors, tdhF, and many others. In
some proteins the domain occurs more than once.This
model recognizes a large number of small GTP-binding
proteins and related domains in larger proteins. Note
that the alpha chains of heterotrimeric G proteins are
larger proteins in which the NKXD motif is separated
from the GxxxxGK[ST] motif (P-loop) by a long insert
and are not easily detected by this model [Unknown
function, General].
Length = 162
Score = 30.0 bits (68), Expect = 0.25
Identities = 16/64 (25%), Positives = 24/64 (37%), Gaps = 13/64 (20%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAEDSPSY 79
++G GK+TLL NRL + SI+ Y P ++ ED +Y
Sbjct: 5 VIVGDPNVGKSTLL----NRLLGNKISIT---------EYKPGTTRNYVTTVIEEDGKTY 51
Query: 80 LLEY 83
Sbjct: 52 KFNL 55
>gnl|CDD|237355 PRK13342, PRK13342, recombination factor protein RarA; Reviewed.
Length = 413
Score = 30.4 bits (70), Expect = 0.27
Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 4/37 (10%)
Query: 23 GPSGCGKTTLLSCIVNRLRLDHGSISLSART--VRDI 57
GP G GKTTL I +LSA T V+D+
Sbjct: 43 GPPGTGKTTLARIIAGATDAP--FEALSAVTSGVKDL 77
>gnl|CDD|224401 COG1484, DnaC, DNA replication protein [DNA replication,
recombination, and repair].
Length = 254
Score = 30.5 bits (69), Expect = 0.30
Identities = 12/20 (60%), Positives = 12/20 (60%)
Query: 21 LLGPSGCGKTTLLSCIVNRL 40
LLGP G GKT L I N L
Sbjct: 110 LLGPPGVGKTHLAIAIGNEL 129
>gnl|CDD|234175 TIGR03348, VI_IcmF, type VI secretion protein IcmF. Members of
this protein family are IcmF homologs and tend to be
associated with type VI secretion systems [Cellular
processes, Pathogenesis].
Length = 1169
Score = 30.4 bits (69), Expect = 0.31
Identities = 10/15 (66%), Positives = 12/15 (80%)
Query: 19 YGLLGPSGCGKTTLL 33
Y ++GP G GKTTLL
Sbjct: 114 YLVIGPPGSGKTTLL 128
>gnl|CDD|225982 COG3451, VirB4, Type IV secretory pathway, VirB4 components
[Intracellular trafficking and secretion].
Length = 796
Score = 30.4 bits (69), Expect = 0.32
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 9/39 (23%)
Query: 10 NTVIFGVTAYGLLGPSGCGKTTLLS-CIVNRLRLDHGSI 47
+T+I G P+G GKT LLS + L+ + I
Sbjct: 438 HTLIIG--------PTGAGKTVLLSFLLAQALKYGNPQI 468
>gnl|CDD|236153 PRK08116, PRK08116, hypothetical protein; Validated.
Length = 268
Score = 30.0 bits (68), Expect = 0.36
Identities = 13/23 (56%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
Query: 20 GLL--GPSGCGKTTLLSCIVNRL 40
GLL G G GKT L +CI N L
Sbjct: 116 GLLLWGSVGTGKTYLAACIANEL 138
>gnl|CDD|206669 cd01882, BMS1, Bms1, an essential GTPase, promotes assembly of
preribosomal RNA processing complexes. Bms1 is an
essential, evolutionarily conserved, nucleolar protein.
Its depletion interferes with processing of the 35S
pre-rRNA at sites A0, A1, and A2, and the formation of
40S subunits. Bms1, the putative endonuclease Rc11, and
the essential U3 small nucleolar RNA form a stable
subcomplex that is believed to control an early step in
the formation of the 40S subumit. The C-terminal domain
of Bms1 contains a GTPase-activating protein (GAP) that
functions intramolecularly. It is believed that Rc11
activates Bms1 by acting as a guanine-nucleotide
exchange factor (GEF) to promote GDP/GTP exchange, and
that activated (GTP-bound) Bms1 delivers Rc11 to the
preribosomes.
Length = 231
Score = 30.0 bits (68), Expect = 0.41
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 23 GPSGCGKTTLLSCIVNR 39
GP G GK+TL+ ++ R
Sbjct: 46 GPPGVGKSTLIRSLIKR 62
>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of
small guanosine triphosphatases (GTPases). Ras-like
GTPase superfamily. The Ras-like superfamily of small
GTPases consists of several families with an extremely
high degree of structural and functional similarity.
The Ras superfamily is divided into at least four
families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf
families. This superfamily also includes proteins like
the GTP translation factors, Era-like GTPases, and
G-alpha chain of the heterotrimeric G proteins. Members
of the Ras superfamily regulate a wide variety of
cellular functions: the Ras family regulates gene
expression, the Rho family regulates cytoskeletal
reorganization and gene expression, the Rab and
Sar1/Arf families regulate vesicle trafficking, and the
Ran family regulates nucleocytoplasmic transport and
microtubule organization. The GTP translation factor
family regulates initiation, elongation, termination,
and release in translation, and the Era-like GTPase
family regulates cell division, sporulation, and DNA
replication. Members of the Ras superfamily are
identified by the GTP binding site, which is made up of
five characteristic sequence motifs, and the switch I
and switch II regions.
Length = 161
Score = 29.3 bits (66), Expect = 0.46
Identities = 6/20 (30%), Positives = 13/20 (65%)
Query: 20 GLLGPSGCGKTTLLSCIVNR 39
++G G GK++LL+ ++
Sbjct: 1 VVVGRGGVGKSSLLNALLGG 20
>gnl|CDD|206691 cd04105, SR_beta, Signal recognition particle receptor, beta
subunit (SR-beta), together with SR-alpha, forms the
heterodimeric signal recognition particle (SRP).
Signal recognition particle receptor, beta subunit
(SR-beta). SR-beta and SR-alpha form the heterodimeric
signal recognition particle (SRP or SR) receptor that
binds SRP to regulate protein translocation across the
ER membrane. Nascent polypeptide chains are synthesized
with an N-terminal hydrophobic signal sequence that
binds SRP54, a component of the SRP. SRP directs
targeting of the ribosome-nascent chain complex (RNC)
to the ER membrane via interaction with the SR, which
is localized to the ER membrane. The RNC is then
transferred to the protein-conducting channel, or
translocon, which facilitates polypeptide translation
across the ER membrane or integration into the ER
membrane. SR-beta is found only in eukaryotes; it is
believed to control the release of the signal sequence
from SRP54 upon binding of the ribosome to the
translocon. High expression of SR-beta has been
observed in human colon cancer, suggesting it may play
a role in the development of this type of cancer.
Length = 202
Score = 29.6 bits (67), Expect = 0.46
Identities = 9/14 (64%), Positives = 10/14 (71%)
Query: 21 LLGPSGCGKTTLLS 34
LLGPS GKT L +
Sbjct: 5 LLGPSDSGKTALFT 18
>gnl|CDD|223645 COG0572, Udk, Uridine kinase [Nucleotide transport and
metabolism].
Length = 218
Score = 29.6 bits (67), Expect = 0.47
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDH-GSISL 49
G+ G SG GKTT+ + +L ++ ISL
Sbjct: 12 GIAGGSGSGKTTVAKELSEQLGVEKVVVISL 42
>gnl|CDD|238978 cd02020, CMPK, Cytidine monophosphate kinase (CMPK) catalyzes the
reversible phosphorylation of cytidine monophosphate
(CMP) to produce cytidine diphosphate (CDP), using ATP
as the preferred phosphoryl donor.
Length = 147
Score = 29.4 bits (67), Expect = 0.50
Identities = 12/46 (26%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Query: 23 GPSGCGKTTLLSCIVNRLRLDH---GSISLSA--RTVRDIGYMPQV 63
GP+G GK+T+ + +L L + G I + ++ +P+V
Sbjct: 6 GPAGSGKSTVAKLLAKKLGLPYLDTGGIRTEEVGKLASEVAAIPEV 51
>gnl|CDD|237802 PRK14723, flhF, flagellar biosynthesis regulator FlhF; Provisional.
Length = 767
Score = 29.8 bits (67), Expect = 0.51
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 19 YGLLGPSGCGKTTLLSCIVNRLRLDHG 45
L+GP+G GKTT + + R G
Sbjct: 188 LALVGPTGVGKTTTTAKLAARCVAREG 214
>gnl|CDD|233918 TIGR02546, III_secr_ATP, type III secretion apparatus
H+-transporting two-sector ATPase. [Protein fate,
Protein and peptide secretion and trafficking, Cellular
processes, Pathogenesis].
Length = 422
Score = 29.6 bits (67), Expect = 0.53
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 20 GLLGPSGCGKTTLLSCIVN 38
G+ +G GK+TLL I
Sbjct: 149 GIFAGAGVGKSTLLGMIAR 167
>gnl|CDD|182986 PRK11131, PRK11131, ATP-dependent RNA helicase HrpA; Provisional.
Length = 1294
Score = 29.6 bits (67), Expect = 0.62
Identities = 30/94 (31%), Positives = 35/94 (37%), Gaps = 30/94 (31%)
Query: 23 GPSGCGKTTLLSCIVNRL-RLDHGSIS------LSARTVRD-------------IGYM-- 60
G +G GKTT L I L R G I L+ARTV + +GY
Sbjct: 96 GETGSGKTTQLPKICLELGRGVKGLIGHTQPRRLAARTVANRIAEELETELGGCVGYKVR 155
Query: 61 --------PQVGLMRSGALLAEDSPSYLLEYYNC 86
V LM G LLAE LL Y+
Sbjct: 156 FNDQVSDNTMVKLMTDGILLAEIQQDRLLMQYDT 189
>gnl|CDD|224084 COG1162, COG1162, Predicted GTPases [General function prediction
only].
Length = 301
Score = 29.6 bits (67), Expect = 0.63
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSIS 48
LLG SG GK+TL++ ++ L G IS
Sbjct: 169 LLGQSGVGKSTLINALLPELNQKTGEIS 196
>gnl|CDD|201257 pfam00485, PRK, Phosphoribulokinase / Uridine kinase family. In
Arabidopsis the region carries two binding domains, a
phosphoribosylpyrophosphate-binding domain and, at the
very C-terminus, a uracil-binding domain.
Length = 197
Score = 29.3 bits (66), Expect = 0.65
Identities = 15/54 (27%), Positives = 20/54 (37%), Gaps = 3/54 (5%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLR---LDHGSISLSARTVRDIGYMPQVGLMRSGA 70
G+ G SG GKTT+ V+ + I + D YM R A
Sbjct: 3 GVTGSSGAGKTTVARTFVSIFGREGVPAAGIEGDSFHRYDRFYMDLHPEDRKRA 56
>gnl|CDD|235244 PRK04182, PRK04182, cytidylate kinase; Provisional.
Length = 180
Score = 29.0 bits (66), Expect = 0.68
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 23 GPSGCGKTTLLSCIVNRLRLDH 44
GP G GKTT+ + +L L H
Sbjct: 7 GPPGSGKTTVARLLAEKLGLKH 28
>gnl|CDD|215649 pfam00004, AAA, ATPase family associated with various cellular
activities (AAA). AAA family proteins often perform
chaperone-like functions that assist in the assembly,
operation, or disassembly of protein complexes.
Length = 131
Score = 28.7 bits (65), Expect = 0.69
Identities = 14/42 (33%), Positives = 18/42 (42%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQ 62
L GP G GKTTL + L IS S + +G +
Sbjct: 3 LYGPPGTGKTTLAKAVAKELGAPFIEISGSELVSKYVGESEK 44
>gnl|CDD|173184 PRK14721, flhF, flagellar biosynthesis regulator FlhF; Provisional.
Length = 420
Score = 29.5 bits (66), Expect = 0.70
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 19 YGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSART 53
Y L+GP+G GKTT + + R + HG+ ++ T
Sbjct: 194 YALIGPTGVGKTTTTAKLAARAVIRHGADKVALLT 228
>gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC. SufC is part of the SUF
system, shown in E. coli to consist of six proteins and
believed to act in Fe-S cluster formation during
oxidative stress. SufC forms a complex with SufB and
SufD. SufC belongs to the ATP-binding cassette
transporter family (pfam00005) but is no longer thought
to be part of a transporter. The complex is reported as
cytosolic (PMID:12554644) or associated with the
membrane (PMID:11943156). The SUF system also includes a
cysteine desulfurase (SufS, enhanced by SufE) and a
probable iron-sulfur cluster assembly scaffold protein,
SufA [Biosynthesis of cofactors, prosthetic groups, and
carriers, Other].
Length = 243
Score = 29.1 bits (66), Expect = 0.72
Identities = 36/150 (24%), Positives = 58/150 (38%), Gaps = 31/150 (20%)
Query: 21 LLGPSGCGKTTLLSCIVNR--LRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAEDSPS 78
++GP+G GK+TL I + G+I + D+ + R+G LA P
Sbjct: 31 IMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQ---DLLELEPDERARAGLFLAFQYPE 87
Query: 79 ---------YLLEYYNCSTLE------DVFLYLCEQDQILFSLVGSESAF---------- 113
+L N D+ +L L +L+G + F
Sbjct: 88 EIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKL-ALLGMDEEFLNRSVNEGFS 146
Query: 114 GGQQRRVSFAVSLIHDPKILILDEPTVGLD 143
GG+++R + +PK+ ILDE GLD
Sbjct: 147 GGEKKRNEILQMALLEPKLAILDEIDSGLD 176
>gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette
domain 1 of RNase L inhibitor. The ABC ATPase, RNase L
inhibitor (RLI), is a key enzyme in ribosomal
biogenesis, formation of translation preinitiation
complexes, and assembly of HIV capsids. RLI s are not
transport proteins and thus cluster with a group of
soluble proteins that lack the transmembrane components
commonly found in other members of the family.
Structurally, RLIs have an N-terminal Fe-S domain and
two nucleotide binding domains which are arranged to
form two composite active sites in their interface
cleft. RLI is one of the most conserved enzymes between
archaea and eukaryotes with a sequence identity more
than 48%. The high degree of evolutionary conservation
suggests that RLI performs a central role in archaeal
and eukaryotic physiology.
Length = 255
Score = 29.3 bits (66), Expect = 0.73
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 114 GGQQRRVSFAVSLIHDPKILILDEPTVGLD 143
GG+ +RV+ A +L D DEP+ LD
Sbjct: 142 GGELQRVAIAAALARDADFYFFDEPSSYLD 171
>gnl|CDD|206679 cd01892, Miro2, Mitochondrial Rho family 2 (Miro2), C-terminal.
Miro2 subfamily. Miro (mitochondrial Rho) proteins have
tandem GTP-binding domains separated by a linker region
containing putative calcium-binding EF hand motifs.
Genes encoding Miro-like proteins were found in several
eukaryotic organisms. This CD represents the putative
GTPase domain in the C terminus of Miro proteins. These
atypical Rho GTPases have roles in mitochondrial
homeostasis and apoptosis. Most Rho proteins contain a
lipid modification site at the C-terminus; however,
Miro is one of few Rho subfamilies that lack this
feature.
Length = 180
Score = 28.7 bits (65), Expect = 0.73
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 22 LGPSGCGKTTLLSCIVNR 39
LG G GK+ LL + R
Sbjct: 10 LGAKGSGKSALLQAFLGR 27
>gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 274
Score = 29.2 bits (65), Expect = 0.85
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 114 GGQQRRVSFAVSLIHDPKILILDEPTVGLDP 144
GGQ + V+ A L +P+ LI DE T LDP
Sbjct: 139 GGQGQCVALAGILTMEPECLIFDEVTSMLDP 169
>gnl|CDD|217465 pfam03266, NTPase_1, NTPase. This domain is found across all
species from bacteria to human, and the function was
determined first in a hyperthermophilic bacterium to be
an NTPase. The structure of one member-sequence
represents a variation of the RecA fold, and implies
that the function might be that of a DNA/RNA modifying
enzyme. The sequence carries both a Walker A and Walker
B motif which together are characteristic of ATPases or
GTPases. The protein exhibits an increased expression
profile in human liver cholangiocarcinoma when compared
to normal tissue.
Length = 168
Score = 28.7 bits (65), Expect = 0.86
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLR 41
+ GP G GKTTL+ ++ L+
Sbjct: 3 FITGPPGVGKTTLVKKVIELLK 24
>gnl|CDD|183521 PRK12422, PRK12422, chromosomal replication initiation protein;
Provisional.
Length = 445
Score = 29.0 bits (65), Expect = 0.86
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSI 47
L GP G GKT L+ V+ LR G I
Sbjct: 146 LFGPEGSGKTHLMQAAVHALRESGGKI 172
>gnl|CDD|232857 TIGR00176, mobB, molybdopterin-guanine dinucleotide biosynthesis
protein MobB. This molybdenum cofactor biosynthesis
enzyme is similar to the urease accessory protein UreG
and to the hydrogenase accessory protein HypB, both GTP
hydrolases involved in loading nickel into the
metallocenters of their respective target enzymes
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Molybdopterin].
Length = 155
Score = 28.5 bits (64), Expect = 0.86
Identities = 9/29 (31%), Positives = 14/29 (48%), Gaps = 5/29 (17%)
Query: 13 IFGVTAYGLLGPSGCGKTTLLSCIVNRLR 41
+ + GP GKTTL+ +V L+
Sbjct: 1 VLQIV-----GPKNSGKTTLIERLVKALK 24
>gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated.
Length = 252
Score = 28.8 bits (65), Expect = 0.87
Identities = 43/166 (25%), Positives = 66/166 (39%), Gaps = 39/166 (23%)
Query: 9 LNTVIFGVTAYGLLGPSGCGKTTLLSCIVNR--LRLDHGSISLSARTVRDIGYMPQVGLM 66
LN I + ++GP+G GK+TL I ++ G I ++ D+ P+
Sbjct: 26 LNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLE--PE---E 80
Query: 67 RS--GALLAEDSP---------SYLLEYYNCSTLEDVFLYLCEQDQILF--------SLV 107
R+ G LA P +L YN + F L E D + F LV
Sbjct: 81 RAHLGIFLAFQYPIEIPGVSNADFLRLAYNS---KRKFQGLPELDPLEFLEIINEKLKLV 137
Query: 108 GSESAF----------GGQQRRVSFAVSLIHDPKILILDEPTVGLD 143
G + +F GG+++R + D ++ ILDE GLD
Sbjct: 138 GMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETDSGLD 183
>gnl|CDD|222194 pfam13521, AAA_28, AAA domain.
Length = 162
Score = 28.7 bits (65), Expect = 0.88
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 21 LLGPSGCGKTTLL 33
+ G GKTTLL
Sbjct: 4 ITGGPSTGKTTLL 16
>gnl|CDD|222005 pfam13245, AAA_19, Part of AAA domain.
Length = 73
Score = 27.3 bits (61), Expect = 0.92
Identities = 12/40 (30%), Positives = 18/40 (45%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYM 60
+ G G GKT + I+ RL S+ + A T R +
Sbjct: 15 VDGGPGTGKTATAAAIIARLLAAGRSVLVVAPTGRAARRL 54
>gnl|CDD|237727 PRK14489, PRK14489, putative bifunctional molybdopterin-guanine
dinucleotide biosynthesis protein MobA/MobB;
Provisional.
Length = 366
Score = 28.9 bits (65), Expect = 0.99
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 15 GVTAYGLLGPSGCGKTTLLSCIVNRLR 41
G++G SG GKTTLL ++ L
Sbjct: 204 APPLLGVVGYSGTGKTTLLEKLIPELI 230
>gnl|CDD|224533 COG1618, COG1618, Predicted nucleotide kinase [Nucleotide
transport and metabolism].
Length = 179
Score = 28.4 bits (64), Expect = 1.1
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLR 41
+ G G GKTTL+ I +LR
Sbjct: 9 FITGRPGVGKTTLVLKIAEKLR 30
>gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small
guanosine triphosphatases (GTPases). Rab GTPases form
the largest family within the Ras superfamily. There
are at least 60 Rab genes in the human genome, and a
number of Rab GTPases are conserved from yeast to
humans. Rab GTPases are small, monomeric proteins that
function as molecular switches to regulate vesicle
trafficking pathways. The different Rab GTPases are
localized to the cytosolic face of specific
intracellular membranes, where they regulate distinct
steps in membrane traffic pathways. In the GTP-bound
form, Rab GTPases recruit specific sets of effector
proteins onto membranes. Through their effectors, Rab
GTPases regulate vesicle formation, actin- and
tubulin-dependent vesicle movement, and membrane
fusion. GTPase activating proteins (GAPs) interact with
GTP-bound Rab and accelerate the hydrolysis of GTP to
GDP. Guanine nucleotide exchange factors (GEFs)
interact with GDP-bound Rabs to promote the formation
of the GTP-bound state. Rabs are further regulated by
guanine nucleotide dissociation inhibitors (GDIs),
which mask C-terminal lipid binding and promote
cytosolic localization. While most unicellular
organisms possess 5-20 Rab members, several have been
found to possess 60 or more Rabs; for many of these Rab
isoforms, homologous proteins are not found in other
organisms. Most Rab GTPases contain a lipid
modification site at the C-terminus, with sequence
motifs CC, CXC, or CCX. Lipid binding is essential for
membrane attachment, a key feature of most Rab
proteins. Since crystal structures often lack
C-terminal residues, the lipid modification site is not
available for annotation in many of the CDs in the
hierarchy, but is included where possible.
Length = 159
Score = 28.2 bits (64), Expect = 1.1
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 21 LLGPSGCGKTTLLSCIVN 38
L+G SG GKT+LL V+
Sbjct: 5 LIGDSGVGKTSLLLRFVD 22
>gnl|CDD|214810 smart00763, AAA_PrkA, PrkA AAA domain. This is a family of PrkA
bacterial and archaeal serine kinases approximately 630
residues long. This is the N-terminal AAA domain.
Length = 361
Score = 28.8 bits (65), Expect = 1.1
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 21 LLGPSGCGKTTLLSCIVNRLR 41
LLGP G GK++L+ C+ L
Sbjct: 83 LLGPVGGGKSSLVECLKRGLE 103
>gnl|CDD|234814 PRK00698, tmk, thymidylate kinase; Validated.
Length = 205
Score = 28.2 bits (64), Expect = 1.1
Identities = 6/19 (31%), Positives = 9/19 (47%)
Query: 23 GPSGCGKTTLLSCIVNRLR 41
G G GK+T + + L
Sbjct: 10 GIDGAGKSTQIELLKELLE 28
>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional.
Length = 880
Score = 28.9 bits (65), Expect = 1.2
Identities = 10/11 (90%), Positives = 10/11 (90%)
Query: 133 LILDEPTVGLD 143
LILDEPTV LD
Sbjct: 815 LILDEPTVFLD 825
>gnl|CDD|238984 cd02026, PRK, Phosphoribulokinase (PRK) is an enzyme involved in
the Benson-Calvin cycle in chloroplasts or
photosynthetic prokaryotes. This enzyme catalyzes the
phosphorylation of D-ribulose 5-phosphate to form
D-ribulose 1, 5-biphosphate, using ATP and NADPH
produced by the primary reactions of photosynthesis.
Length = 273
Score = 28.5 bits (64), Expect = 1.2
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 20 GLLGPSGCGKTTLL 33
G+ G SGCGK+T L
Sbjct: 3 GVAGDSGCGKSTFL 16
>gnl|CDD|222163 pfam13479, AAA_24, AAA domain. This AAA domain is found in a
wide variety of presumed phage proteins.
Length = 201
Score = 28.4 bits (64), Expect = 1.2
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Query: 21 LLGPSGCGKTTLLSCIVNR---LRLDHGSISLSART 53
+ GP G GKT+L + + L LD G+ + +R
Sbjct: 8 IYGPPGIGKTSLAKTLPPKTLFLDLDAGTTKVLSRG 43
>gnl|CDD|211621 TIGR01039, atpD, ATP synthase, F1 beta subunit. The sequences of
ATP synthase F1 alpha and beta subunits are related and
both contain a nucleotide-binding site for ATP and ADP.
They have a common amino terminal domain but vary at the
C-terminus. The beta chain has catalytic activity, while
the alpha chain is a regulatory subunit. Proton
translocating ATP synthase, F1 beta subunit is
homologous to proton translocating ATP synthase
archaeal/vacuolar(V1), A subunit [Energy metabolism,
ATP-proton motive force interconversion].
Length = 461
Score = 28.5 bits (64), Expect = 1.2
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISLSA 51
GL G +G GKT L+ ++N + +HG S+ A
Sbjct: 147 GLFGGAGVGKTVLIQELINNIAKEHGGYSVFA 178
>gnl|CDD|237040 PRK12289, PRK12289, GTPase RsgA; Reviewed.
Length = 352
Score = 28.4 bits (64), Expect = 1.2
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 9/59 (15%)
Query: 23 GPSGCGKTTLLSCIVNRLRLDHGSISLSAR----TVRDIGYMPQVGLMRSGALLAEDSP 77
GPSG GK++L++ ++ + L G +S T R + + +G LLA D+P
Sbjct: 179 GPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFE----LPNGGLLA-DTP 232
>gnl|CDD|215427 PLN02796, PLN02796, D-glycerate 3-kinase.
Length = 347
Score = 28.6 bits (64), Expect = 1.3
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 20 GLLGPSGCGKTTLLSCIVNRL-RLDHGSISLS 50
G+ P GCGKTTL+ +V + SLS
Sbjct: 104 GISAPQGCGKTTLVFALVYLFNATGRRAASLS 135
>gnl|CDD|224027 COG1102, Cmk, Cytidylate kinase [Nucleotide transport and
metabolism].
Length = 179
Score = 28.1 bits (63), Expect = 1.3
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 3/35 (8%)
Query: 23 GPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDI 57
G G GKTT+ + L L S + R++
Sbjct: 7 GLPGSGKTTVARELAEHLGLKLVS---AGTIFREM 38
>gnl|CDD|226232 COG3709, COG3709, Uncharacterized component of phosphonate
metabolism [Inorganic ion transport and metabolism].
Length = 192
Score = 28.1 bits (63), Expect = 1.3
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLD 43
++GPSG GK TLL RL
Sbjct: 10 VVGPSGAGKDTLLDAARARLAGR 32
>gnl|CDD|239390 cd03116, MobB, Molybdenum is an essential trace element in the
form of molybdenum cofactor (Moco) which is associated
with the metabolism of nitrogen, carbon and sulfur by
redox active enzymes. In E. coli, the synthesis of Moco
involves genes from several loci: moa, mob, mod, moe
and mog. The mob locus contains mobA and mobB genes.
MobB catalyzes the attachment of the guanine
dinucleotide to molybdopterin.
Length = 159
Score = 28.0 bits (63), Expect = 1.4
Identities = 11/29 (37%), Positives = 14/29 (48%), Gaps = 5/29 (17%)
Query: 13 IFGVTAYGLLGPSGCGKTTLLSCIVNRLR 41
+ G G SG GKTTLL ++ L
Sbjct: 3 VIGFV-----GYSGSGKTTLLEKLIPALS 26
>gnl|CDD|233193 TIGR00929, VirB4_CagE, type IV secretion/conjugal transfer ATPase,
VirB4 family. Type IV secretion systems are found in
Gram-negative pathogens. They export proteins, DNA, or
complexes in different systems and are related to
plasmid conjugation systems. This model represents
related ATPases that include VirB4 in Agrobacterium
tumefaciens (DNA export) CagE in Helicobacter pylori
(protein export) and plasmid TraB (conjugation).
Length = 785
Score = 28.4 bits (64), Expect = 1.4
Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 8/32 (25%)
Query: 10 NTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLR 41
+T+IFG P+G GKTTLL+ ++ +++
Sbjct: 436 HTLIFG--------PTGSGKTTLLNFLLAQMQ 459
>gnl|CDD|225363 COG2804, PulE, Type II secretory pathway, ATPase PulE/Tfp pilus
assembly pathway, ATPase PilB [Cell motility and
secretion / Intracellular trafficking and secretion].
Length = 500
Score = 28.5 bits (64), Expect = 1.4
Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 3/25 (12%)
Query: 19 YGLL---GPSGCGKTTLLSCIVNRL 40
GL+ GP+G GKTT L ++ L
Sbjct: 258 QGLILVTGPTGSGKTTTLYAALSEL 282
>gnl|CDD|180975 PRK07429, PRK07429, phosphoribulokinase; Provisional.
Length = 327
Score = 28.4 bits (64), Expect = 1.4
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 20 GLLGPSGCGKTTLLSCIVNRL 40
G+ G SGCGKTT L + + L
Sbjct: 12 GVAGDSGCGKTTFLRGLADLL 32
>gnl|CDD|234988 PRK01889, PRK01889, GTPase RsgA; Reviewed.
Length = 356
Score = 28.4 bits (64), Expect = 1.6
Identities = 12/20 (60%), Positives = 13/20 (65%), Gaps = 4/20 (20%)
Query: 21 LLGPSGCGKTTLLSCIVNRL 40
LLG SG GK+TL VN L
Sbjct: 200 LLGSSGVGKSTL----VNAL 215
>gnl|CDD|225165 COG2256, MGS1, ATPase related to the helicase subunit of the
Holliday junction resolvase [DNA replication,
recombination, and repair].
Length = 436
Score = 28.4 bits (64), Expect = 1.7
Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 7/54 (12%)
Query: 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDI 57
V A L+++I GP G GKTTL I ++S V+D+
Sbjct: 43 VEAGHLHSMIL-------WGPPGTGKTTLARLIAGTTNAAFEALSAVTSGVKDL 89
>gnl|CDD|223455 COG0378, HypB, Ni2+-binding GTPase involved in regulation of
expression and maturation of urease and hydrogenase
[Posttranslational modification, protein turnover,
chaperones / Transcription].
Length = 202
Score = 27.9 bits (63), Expect = 1.7
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLR 41
G+ GP G GKT L+ + L+
Sbjct: 17 GVGGPPGSGKTALIEKTLRALK 38
>gnl|CDD|215955 pfam00503, G-alpha, G-protein alpha subunit. G proteins couple
receptors of extracellular signals to intracellular
signaling pathways. The G protein alpha subunit binds
guanyl nucleotide and is a weak GTPase. A set of
residues that are unique to G-alpha as compared to its
ancestor the Arf-like family form a ring of residues
centered on the nucleotide binding site. A Ggamma is
found fused to an inactive Galpha in the Dictyostelium
protein gbqA.
Length = 329
Score = 28.0 bits (63), Expect = 1.7
Identities = 9/26 (34%), Positives = 15/26 (57%), Gaps = 4/26 (15%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGS 46
LLG GK+T I+ ++++ HG
Sbjct: 7 LLGAGESGKST----ILKQMKILHGG 28
>gnl|CDD|226372 COG3854, SpoIIIAA, ncharacterized protein conserved in bacteria
[Function unknown].
Length = 308
Score = 28.3 bits (63), Expect = 1.7
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 21 LLGPSGCGKTTLL 33
++GP GKTTLL
Sbjct: 142 IIGPPQVGKTTLL 154
>gnl|CDD|182330 PRK10246, PRK10246, exonuclease subunit SbcC; Provisional.
Length = 1047
Score = 28.2 bits (63), Expect = 1.8
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 7/39 (17%)
Query: 13 IFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSA 51
+F +T GP+G GKTTLL I L L H + L+
Sbjct: 32 LFAIT-----GPTGAGKTTLLDAIC--LALYHETPRLNN 63
>gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit;
Provisional.
Length = 549
Score = 28.3 bits (63), Expect = 1.8
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 115 GQQRRVSFAVSLIHDPKILILDE 137
G + R+ FA+S+ +P IL++DE
Sbjct: 147 GMKSRLGFAISVHINPDILVIDE 169
>gnl|CDD|218719 pfam05729, NACHT, NACHT domain. This NTPase domain is found in
apoptosis proteins as well as those involved in MHC
transcription activation. This family is closely
related to pfam00931.
Length = 165
Score = 27.7 bits (62), Expect = 1.9
Identities = 14/44 (31%), Positives = 17/44 (38%), Gaps = 6/44 (13%)
Query: 21 LLGPSGCGKTTLLSCIVNRL---RLDHG---SISLSARTVRDIG 58
L G +G GKTTLL I +L L R + G
Sbjct: 5 LQGEAGSGKTTLLQKIALLWAQGKLPQDFDFVFFLPCRELSRSG 48
>gnl|CDD|232811 TIGR00073, hypB, hydrogenase accessory protein HypB. A GTP
hydrolase for assembly of nickel metallocenter of
hydrogenase. A similar protein, ureG, is an accessory
protein for urease, which also uses nickel. hits
scoring 75 and above are safe as orthologs. [SS 1/05/04
I changed the role_ID and process GO from protein
folding to to protein modification, since a protein
folding role has not been established, but HypB is
implicated in insertion of nickel into the large
subunit of NiFe hydrogenases.] [Protein fate, Protein
modification and repair].
Length = 208
Score = 27.7 bits (62), Expect = 1.9
Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Query: 15 GVTAYGLLGPSGCGKTTLLSCIVNRLRLDH--GSISLSARTVRDIGYMPQVG 64
G+ + G GKTTL+ +++ L+ + I T D + + G
Sbjct: 21 GLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYG 72
>gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD;
Provisional.
Length = 254
Score = 27.7 bits (62), Expect = 2.0
Identities = 40/149 (26%), Positives = 60/149 (40%), Gaps = 32/149 (21%)
Query: 21 LLGPSGCGKTTLLSC-------------IVNRLRLDHGSI---SLSARTVRDIGYMPQ-- 62
L+G SG GK+ L+C R+ LD + +L R + I P+
Sbjct: 34 LVGGSGSGKS--LTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIATIMQNPRSA 91
Query: 63 ---VGLMRSGA---LLAEDSPSYLLEYYNCSTLEDVFLYLCEQDQILFSLVGSESAFGGQ 116
+ M + A LA P+ LE V L E + L E + GG
Sbjct: 92 FNPLHTMHTHARETCLALGKPADDATLTAA--LEAVGL---ENAARVLKLYPFEMS-GGM 145
Query: 117 QRRVSFAVSLIHDPKILILDEPTVGLDPV 145
+R+ A++L+ + +I DEPT LD V
Sbjct: 146 LQRMMIALALLCEAPFIIADEPTTDLDVV 174
>gnl|CDD|225369 COG2812, DnaX, DNA polymerase III, gamma/tau subunits [DNA
replication, recombination, and repair].
Length = 515
Score = 28.1 bits (63), Expect = 2.0
Identities = 9/15 (60%), Positives = 10/15 (66%)
Query: 18 AYGLLGPSGCGKTTL 32
AY GP G GKTT+
Sbjct: 40 AYLFSGPRGVGKTTI 54
>gnl|CDD|226691 COG4240, COG4240, Predicted kinase [General function prediction
only].
Length = 300
Score = 27.9 bits (62), Expect = 2.0
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 20 GLLGPSGCGKTTLLSCIVNRL 40
G+ GP G GK+TL + IV L
Sbjct: 54 GISGPQGSGKSTLSALIVRLL 74
>gnl|CDD|131580 TIGR02528, EutP, ethanolamine utilization protein, EutP. This
protein is found within operons which code for
polyhedral organelles containing the enzyme
ethanolamine ammonia lyase. The function of this gene
is unknown, although the presence of an N-terminal
GxxGxGK motif implies a GTP-binding site [Energy
metabolism, Amino acids and amines].
Length = 142
Score = 27.4 bits (61), Expect = 2.0
Identities = 8/12 (66%), Positives = 9/12 (75%)
Query: 21 LLGPSGCGKTTL 32
+G GCGKTTL
Sbjct: 5 FIGSVGCGKTTL 16
>gnl|CDD|224260 COG1341, COG1341, Predicted GTPase or GTP-binding protein
[General function prediction only].
Length = 398
Score = 28.1 bits (63), Expect = 2.0
Identities = 8/20 (40%), Positives = 14/20 (70%)
Query: 21 LLGPSGCGKTTLLSCIVNRL 40
++GP GK+TL + + N+L
Sbjct: 78 VVGPVDSGKSTLTTYLANKL 97
>gnl|CDD|235422 PRK05342, clpX, ATP-dependent protease ATP-binding subunit ClpX;
Provisional.
Length = 412
Score = 27.8 bits (63), Expect = 2.0
Identities = 8/12 (66%), Positives = 10/12 (83%)
Query: 21 LLGPSGCGKTTL 32
L+GP+G GKT L
Sbjct: 113 LIGPTGSGKTLL 124
>gnl|CDD|221957 pfam13175, AAA_15, AAA ATPase domain. This family of domains
contain a P-loop motif that is characteristic of the
AAA superfamily.
Length = 320
Score = 27.8 bits (62), Expect = 2.2
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSISLS 50
++G +G GKTT+L + N IS+S
Sbjct: 27 IIGENGSGKTTILEALDNLKEKKKIYISIS 56
>gnl|CDD|237809 PRK14738, gmk, guanylate kinase; Provisional.
Length = 206
Score = 27.4 bits (61), Expect = 2.3
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 8/40 (20%)
Query: 9 LNTVIFGVTAYGLL----GPSGCGKTTLLSCIVNRLRLDH 44
+N +F A LL GPSG GK +L R+R
Sbjct: 2 MNPWLFNKPAKPLLVVISGPSGVGKDAVL----ARMRERK 37
>gnl|CDD|182479 PRK10463, PRK10463, hydrogenase nickel incorporation protein HypB;
Provisional.
Length = 290
Score = 27.8 bits (62), Expect = 2.3
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 15 GVTAYGLLGPSGCGKTTLLSCIVNRLRLDH 44
L+ G GKTTLL+ + RL+
Sbjct: 103 KQLVLNLVSSPGSGKTTLLTETLMRLKDSV 132
>gnl|CDD|237186 PRK12740, PRK12740, elongation factor G; Reviewed.
Length = 668
Score = 27.8 bits (63), Expect = 2.4
Identities = 8/12 (66%), Positives = 9/12 (75%)
Query: 22 LGPSGCGKTTLL 33
+G SG GKTTL
Sbjct: 1 VGHSGAGKTTLT 12
>gnl|CDD|217424 pfam03205, MobB, Molybdopterin guanine dinucleotide synthesis
protein B. This protein contains a P-loop.
Length = 126
Score = 27.0 bits (60), Expect = 2.7
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 11/34 (32%)
Query: 23 GPSGCGKTTLLSCIVNRLR-----------LDHG 45
GP GKTTL+ ++N L+ LDHG
Sbjct: 7 GPKDSGKTTLIRKLLNYLKRRGYRVAVVKHLDHG 40
>gnl|CDD|224079 COG1157, FliI, Flagellar biosynthesis/type III secretory pathway
ATPase [Cell motility and secretion / Intracellular
trafficking and secretion].
Length = 441
Score = 27.6 bits (62), Expect = 2.7
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 20 GLLGPSGCGKTTLLSCIVN 38
G+ SG GK+TLL I
Sbjct: 167 GIFAGSGVGKSTLLGMIAR 185
>gnl|CDD|224292 COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General
function prediction only].
Length = 398
Score = 27.8 bits (62), Expect = 2.7
Identities = 9/17 (52%), Positives = 10/17 (58%)
Query: 17 TAYGLLGPSGCGKTTLL 33
+LGP GKTTLL
Sbjct: 38 FIILILGPRQVGKTTLL 54
>gnl|CDD|237475 PRK13695, PRK13695, putative NTPase; Provisional.
Length = 174
Score = 27.2 bits (61), Expect = 2.9
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLR 41
G+ GP G GKTTL+ I L+
Sbjct: 4 GITGPPGVGKTTLVLKIAELLK 25
>gnl|CDD|225164 COG2255, RuvB, Holliday junction resolvasome, helicase subunit
[DNA replication, recombination, and repair].
Length = 332
Score = 27.5 bits (62), Expect = 2.9
Identities = 12/20 (60%), Positives = 12/20 (60%)
Query: 21 LLGPSGCGKTTLLSCIVNRL 40
L GP G GKTTL I N L
Sbjct: 57 LFGPPGLGKTTLAHIIANEL 76
>gnl|CDD|237354 PRK13341, PRK13341, recombination factor protein RarA/unknown
domain fusion protein; Reviewed.
Length = 725
Score = 27.3 bits (61), Expect = 3.1
Identities = 15/37 (40%), Positives = 19/37 (51%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDI 57
L GP G GKTTL I N R S++ V+D+
Sbjct: 57 LYGPPGVGKTTLARIIANHTRAHFSSLNAVLAGVKDL 93
>gnl|CDD|216186 pfam00910, RNA_helicase, RNA helicase. This family includes RNA
helicases thought to be involved in duplex unwinding
during viral RNA replication. Members of this family
are found in a variety of single stranded RNA viruses.
Length = 105
Score = 26.4 bits (59), Expect = 3.2
Identities = 9/12 (75%), Positives = 10/12 (83%)
Query: 21 LLGPSGCGKTTL 32
L GP GCGK+TL
Sbjct: 3 LYGPPGCGKSTL 14
>gnl|CDD|226415 COG3899, COG3899, Predicted ATPase [General function prediction
only].
Length = 849
Score = 27.4 bits (61), Expect = 3.3
Identities = 14/69 (20%), Positives = 24/69 (34%), Gaps = 15/69 (21%)
Query: 21 LLGPSGCGKTTLLSCIVNRLR-----------LDHGS-ISLSA--RTVRDI-GYMPQVGL 65
+ G SG GK+ L++ + + I LS + RD+ G +
Sbjct: 29 VAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIPLSPLVQAFRDLMGQLLSESD 88
Query: 66 MRSGALLAE 74
R + A
Sbjct: 89 TRILSWRAR 97
>gnl|CDD|224140 COG1219, ClpX, ATP-dependent protease Clp, ATPase subunit
[Posttranslational modification, protein turnover,
chaperones].
Length = 408
Score = 27.2 bits (61), Expect = 3.3
Identities = 8/12 (66%), Positives = 10/12 (83%)
Query: 21 LLGPSGCGKTTL 32
L+GP+G GKT L
Sbjct: 102 LIGPTGSGKTLL 113
>gnl|CDD|238556 cd01136, ATPase_flagellum-secretory_path_III, Flagellum-specific
ATPase/type III secretory pathway virulence-related
protein. This group of ATPases are responsible for the
export of flagellum and virulence-related proteins. The
bacterial flagellar motor is similar to the F0F1-ATPase,
in that they both are proton driven rotary molecular
devices. However, the main function of the bacterial
flagellar motor is to rotate the flagellar filament for
cell motility. Intracellular pathogens such as
Salmonella and Chlamydia also have proteins which are
similar to the flagellar-specific ATPase, but function
in the secretion of virulence-related proteins via the
type III secretory pathway.
Length = 326
Score = 27.2 bits (61), Expect = 3.3
Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISL---SARTVRD 56
G+ SG GK+TLL I D I+L R VR+
Sbjct: 73 GIFAGSGVGKSTLLGMIARGTTADVNVIALIGERGREVRE 112
>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit;
Provisional.
Length = 482
Score = 27.2 bits (61), Expect = 3.3
Identities = 8/12 (66%), Positives = 9/12 (75%)
Query: 21 LLGPSGCGKTTL 32
L GP G GKT+L
Sbjct: 44 LYGPPGVGKTSL 55
>gnl|CDD|236648 PRK10078, PRK10078, ribose 1,5-bisphosphokinase; Provisional.
Length = 186
Score = 27.0 bits (60), Expect = 3.3
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 21 LLGPSGCGKTTLLSCIVNR 39
L+GPSG GK +LL+ + R
Sbjct: 7 LMGPSGSGKDSLLAALRQR 25
>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau;
Validated.
Length = 824
Score = 27.3 bits (61), Expect = 3.4
Identities = 9/14 (64%), Positives = 10/14 (71%)
Query: 18 AYGLLGPSGCGKTT 31
AY GP GCGKT+
Sbjct: 39 AYLFSGPRGCGKTS 52
>gnl|CDD|129694 TIGR00606, rad50, rad50. All proteins in this family for which
functions are known are involvedin recombination,
recombinational repair, and/or non-homologous end
joining.They are components of an exonuclease complex
with MRE11 homologs. This family is distantly related
to the SbcC family of bacterial proteins.This family is
based on the phylogenomic analysis of JA Eisen (1999,
Ph.D. Thesis, Stanford University).
Length = 1311
Score = 27.3 bits (60), Expect = 3.4
Identities = 9/16 (56%), Positives = 14/16 (87%)
Query: 21 LLGPSGCGKTTLLSCI 36
L+GP+G GKTT++ C+
Sbjct: 33 LVGPNGAGKTTIIECL 48
>gnl|CDD|131688 TIGR02640, gas_vesic_GvpN, gas vesicle protein GvpN. Members of
this family are the GvpN protein associated with the
production of gas vesicles produced in some prokaryotes
to give cells buoyancy. This family belongs to a larger
family of ATPases (pfam07728) [Cellular processes,
Other].
Length = 262
Score = 27.1 bits (60), Expect = 3.5
Identities = 9/12 (75%), Positives = 10/12 (83%)
Query: 21 LLGPSGCGKTTL 32
L GP+G GKTTL
Sbjct: 26 LRGPAGTGKTTL 37
>gnl|CDD|224557 COG1643, HrpA, HrpA-like helicases [DNA replication, recombination,
and repair].
Length = 845
Score = 27.3 bits (61), Expect = 3.5
Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 15/45 (33%)
Query: 21 LLGPSGCGKTT-----LLSCIVNRLRLDHGSIS------LSARTV 54
++G +G GKTT LL G I L+AR+V
Sbjct: 70 IVGETGSGKTTQLPQFLLEEG----LGIAGKIGCTQPRRLAARSV 110
>gnl|CDD|233355 TIGR01313, therm_gnt_kin, carbohydrate kinase, thermoresistant
glucokinase family. This model represents a subfamily
of proteins that includes thermoresistant and
thermosensitve isozymes of gluconate kinase
(gluconokinase) in E. coli and other related proteins;
members of this family are often named by similarity to
the thermostable isozyme. These proteins show homology
to shikimate kinases and adenylate kinases but not to
gluconate kinases from the FGGY family of carbohydrate
kinases.
Length = 163
Score = 27.0 bits (60), Expect = 3.5
Identities = 9/20 (45%), Positives = 15/20 (75%)
Query: 21 LLGPSGCGKTTLLSCIVNRL 40
L+G +G GK+T+ S + +RL
Sbjct: 3 LMGVAGSGKSTIASALAHRL 22
>gnl|CDD|237728 PRK14490, PRK14490, putative bifunctional molybdopterin-guanine
dinucleotide biosynthesis protein MobB/MobA;
Provisional.
Length = 369
Score = 27.3 bits (61), Expect = 3.6
Identities = 11/18 (61%), Positives = 14/18 (77%)
Query: 23 GPSGCGKTTLLSCIVNRL 40
G SG GKTTL++ +V RL
Sbjct: 12 GYSGSGKTTLITALVRRL 29
>gnl|CDD|222104 pfam13401, AAA_22, AAA domain.
Length = 124
Score = 26.5 bits (59), Expect = 3.7
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 21 LLGPSGCGKTTLLSCIVNRL 40
L G SG GKTTLL + +L
Sbjct: 9 LTGESGSGKTTLLRRLARQL 28
>gnl|CDD|221803 pfam12846, AAA_10, AAA-like domain. This family of domains
contain a P-loop motif that is characteristic of the
AAA superfamily. Many of the proteins in this family
are conjugative transfer proteins.
Length = 316
Score = 27.0 bits (60), Expect = 3.8
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRL 42
++GPSG GK+TLL + RL
Sbjct: 6 IVGPSGSGKSTLLKLLALRLLA 27
>gnl|CDD|221983 pfam13207, AAA_17, AAA domain.
Length = 114
Score = 26.5 bits (58), Expect = 3.8
Identities = 7/10 (70%), Positives = 8/10 (80%)
Query: 23 GPSGCGKTTL 32
GP G GK+TL
Sbjct: 6 GPPGSGKSTL 15
>gnl|CDD|219538 pfam07728, AAA_5, AAA domain (dynein-related subfamily). This
Pfam entry includes some of the AAA proteins not
detected by the pfam00004 model.
Length = 135
Score = 26.5 bits (59), Expect = 3.9
Identities = 7/12 (58%), Positives = 9/12 (75%)
Query: 21 LLGPSGCGKTTL 32
L+GP G GK+ L
Sbjct: 4 LVGPPGTGKSEL 15
>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P. syringae 6; Provisional.
Length = 1153
Score = 27.1 bits (60), Expect = 3.9
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 16 VTAYGLLGPSGCGKTTLLSCIVNRL-RLDHGSI 47
V G+ G SG GKTT+ + +RL R S+
Sbjct: 207 VRMVGIWGSSGIGKTTIARALFSRLSRQFQSSV 239
>gnl|CDD|237525 PRK13830, PRK13830, conjugal transfer protein TrbE; Provisional.
Length = 818
Score = 27.1 bits (60), Expect = 3.9
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 21 LLGPSGCGKTTLLSCIVNRLR 41
+ GP+G GK+TLL+ I + R
Sbjct: 461 IFGPTGSGKSTLLALIAAQFR 481
>gnl|CDD|238977 cd02019, NK, Nucleoside/nucleotide kinase (NK) is a protein
superfamily consisting of multiple families of enzymes
that share structural similarity and are functionally
related to the catalysis of the reversible phosphate
group transfer from nucleoside triphosphates to
nucleosides/nucleotides, nucleoside monophosphates, or
sugars. Members of this family play a wide variety of
essential roles in nucleotide metabolism, the
biosynthesis of coenzymes and aromatic compounds, as
well as the metabolism of sugar and sulfate.
Length = 69
Score = 25.8 bits (57), Expect = 4.0
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 19 YGLLGPSGCGKTTLLSCIVNRLRLDH 44
+ G SG GK+T+ + +L
Sbjct: 2 IAITGGSGSGKSTVAKKLAEQLGGRS 27
>gnl|CDD|215920 pfam00437, T2SE, Type II/IV secretion system protein. This family
contains both type II and type IV pathway secretion
proteins from bacteria. VirB11 ATPase is a subunit of
the Agrobacterium tumefaciens transfer DNA (T-DNA)
transfer system, a type IV secretion pathway required
for delivery of T-DNA and effector proteins to plant
cells during infection.
Length = 273
Score = 26.8 bits (60), Expect = 4.1
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
Query: 16 VTAYGLL---GPSGCGKTTLLSCIVNRL 40
V A G + G +G GKTTLL ++N +
Sbjct: 126 VQARGNILVSGGTGSGKTTLLYALLNEI 153
>gnl|CDD|222307 pfam13671, AAA_33, AAA domain. This family of domains contain
only a P-loop motif, that is characteristic of the AAA
superfamily. Many of the proteins in this family are
just short fragments so there is no Walker B motif.
Length = 143
Score = 26.5 bits (59), Expect = 4.2
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Query: 23 GPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRD 56
G G GK+T RL + G++ LS+ T+R
Sbjct: 6 GLPGSGKSTF----ARRLLRELGAVVLSSDTLRK 35
>gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and
permease components [Secondary metabolites biosynthesis,
transport, and catabolism / Inorganic ion transport and
metabolism].
Length = 546
Score = 27.1 bits (60), Expect = 4.2
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 115 GQQRRVSFAVSLIHDPKILILDEPTVGLDPV 145
GQ++R++ ++L+ + IL+LDE DP
Sbjct: 452 GQKKRLALLLALLEERDILVLDEWAADQDPA 482
>gnl|CDD|234232 TIGR03499, FlhF, flagellar biosynthetic protein FlhF. [Cellular
processes, Chemotaxis and motility].
Length = 283
Score = 26.9 bits (60), Expect = 4.2
Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Query: 15 GVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGS 46
GV A L+GP+G GKTT L+ + R L+HG
Sbjct: 196 GVIA--LVGPTGVGKTTTLAKLAARFVLEHGK 225
>gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 195
Score = 26.8 bits (59), Expect = 4.2
Identities = 28/125 (22%), Positives = 52/125 (41%), Gaps = 6/125 (4%)
Query: 23 GPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIG--YMPQVG--LMRSGALLAEDSPS 78
G +GCGK++LL I ++ G+I + +I Y +G L + ++
Sbjct: 33 GANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGHNLGLKLEMTVFENLK 92
Query: 79 YLLEYYNCSTLEDVFLYLCEQDQILFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEP 138
+ E YN + ++ + +L S S+ G Q+ V+ A + + +LDE
Sbjct: 93 FWSEIYNSAETLYAAIHYFKLHDLLDEKCYSLSS--GMQKIVAIARLIACQSDLWLLDEV 150
Query: 139 TVGLD 143
L
Sbjct: 151 ETNLS 155
>gnl|CDD|225364 COG2805, PilT, Tfp pilus assembly protein, pilus retraction ATPase
PilT [Cell motility and secretion / Intracellular
trafficking and secretion].
Length = 353
Score = 26.8 bits (60), Expect = 4.3
Identities = 7/16 (43%), Positives = 13/16 (81%)
Query: 23 GPSGCGKTTLLSCIVN 38
GP+G GK+T L+ +++
Sbjct: 132 GPTGSGKSTTLAAMID 147
>gnl|CDD|216558 pfam01536, SAM_decarbox, Adenosylmethionine decarboxylase. This is
a family of S-adenosylmethionine decarboxylase (SAMDC)
proenzymes. In the biosynthesis of polyamines SAMDC
produces decarboxylated S-adenosylmethionine, which
serves as the aminopropyl moiety necessary for
spermidine and spermine biosynthesis from putrescine.
The Pfam alignment contains both the alpha and beta
chains that are cleaved to form the active enzyme.
Length = 328
Score = 26.9 bits (60), Expect = 4.4
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 27 CGKTTLLSCIVNRLRLDHGSISLSARTVR 55
CG TTLL I L L ++SL ++V
Sbjct: 80 CGTTTLLLSIPPILEL-AEALSLEVQSVF 107
>gnl|CDD|238713 cd01428, ADK, Adenylate kinase (ADK) catalyzes the reversible
phosphoryl transfer from adenosine triphosphates (ATP)
to adenosine monophosphates (AMP) and to yield
adenosine diphosphates (ADP). This enzyme is required
for the biosynthesis of ADP and is essential for
homeostasis of adenosine phosphates.
Length = 194
Score = 26.8 bits (60), Expect = 4.4
Identities = 12/28 (42%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSIS 48
LLGP G GK T + + L H IS
Sbjct: 4 LLGPPGSGKGTQAERLAKKYGLPH--IS 29
>gnl|CDD|129690 TIGR00602, rad24, checkpoint protein rad24. All proteins in this
family for which functions are known are involved in DNA
damage tolerance (likely cell cycle checkpoints).This
family is based on the phylogenomic analysis of JA Eisen
(1999, Ph.D. Thesis, Stanford University) [DNA
metabolism, DNA replication, recombination, and repair].
Length = 637
Score = 27.2 bits (60), Expect = 4.5
Identities = 8/13 (61%), Positives = 11/13 (84%)
Query: 21 LLGPSGCGKTTLL 33
+ GPSGCGK+T +
Sbjct: 115 ITGPSGCGKSTTI 127
>gnl|CDD|223666 COG0593, DnaA, ATPase involved in DNA replication initiation [DNA
replication, recombination, and repair].
Length = 408
Score = 26.9 bits (60), Expect = 4.5
Identities = 9/19 (47%), Positives = 9/19 (47%)
Query: 23 GPSGCGKTTLLSCIVNRLR 41
G G GKT LL I N
Sbjct: 120 GGVGLGKTHLLQAIGNEAL 138
>gnl|CDD|235492 PRK05480, PRK05480, uridine/cytidine kinase; Provisional.
Length = 209
Score = 26.7 bits (60), Expect = 4.5
Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 5/33 (15%)
Query: 12 VIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDH 44
+I G+ G SG GKTT+ S I L +
Sbjct: 7 IIIGIA-----GGSGSGKTTVASTIYEELGDES 34
>gnl|CDD|184920 PRK14956, PRK14956, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 484
Score = 26.8 bits (59), Expect = 4.5
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 18 AYGLLGPSGCGKTTLLSCIVNRL 40
AY GP G GKTT+ + RL
Sbjct: 42 AYIFFGPRGVGKTTIARILAKRL 64
>gnl|CDD|233659 TIGR01967, DEAH_box_HrpA, ATP-dependent helicase HrpA. This model
represents HrpA, one of two related but uncharacterized
DEAH-box ATP-dependent helicases in many Proteobacteria
and a few high-GC Gram-positive bacteria. HrpA is about
1300 amino acids long, while its paralog HrpB, also
uncharacterized, is about 800 amino acids long. Related
characterized eukarotic proteins are RNA helicases
associated with pre-mRNA processing [Unknown function,
Enzymes of unknown specificity].
Length = 1283
Score = 27.0 bits (60), Expect = 4.9
Identities = 30/93 (32%), Positives = 35/93 (37%), Gaps = 30/93 (32%)
Query: 23 GPSGCGKTTLLSCIVNRL-RLDHGSIS------LSARTVRD-------------IGYMPQ 62
G +G GKTT L I L R HG I L+ARTV +GY +
Sbjct: 89 GETGSGKTTQLPKICLELGRGSHGLIGHTQPRRLAARTVAQRIAEELGTPLGEKVGYKVR 148
Query: 63 ----------VGLMRSGALLAEDSPSYLLEYYN 85
V LM G LLAE L Y+
Sbjct: 149 FHDQVSSNTLVKLMTDGILLAETQQDRFLSRYD 181
>gnl|CDD|172477 PRK13974, PRK13974, thymidylate kinase; Provisional.
Length = 212
Score = 26.5 bits (59), Expect = 4.9
Identities = 17/50 (34%), Positives = 21/50 (42%), Gaps = 20/50 (40%)
Query: 23 GPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALL 72
G GCGKTT ++DH S ++P GLM GA L
Sbjct: 10 GIDGCGKTT---------QIDHLS-----------KWLPSSGLMPKGAKL 39
>gnl|CDD|235256 PRK04210, PRK04210, phosphoenolpyruvate carboxykinase; Provisional.
Length = 601
Score = 26.7 bits (60), Expect = 5.0
Identities = 7/9 (77%), Positives = 7/9 (77%)
Query: 24 PSGCGKTTL 32
PS CGKT L
Sbjct: 264 PSACGKTNL 272
>gnl|CDD|223540 COG0464, SpoVK, ATPases of the AAA+ class [Posttranslational
modification, protein turnover, chaperones].
Length = 494
Score = 26.7 bits (59), Expect = 5.1
Identities = 9/22 (40%), Positives = 10/22 (45%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRL 42
L GP G GKT L + R
Sbjct: 281 LYGPPGTGKTLLAKAVALESRS 302
>gnl|CDD|215692 pfam00071, Ras, Ras family. Includes sub-families Ras, Rab, Rac,
Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with
GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025,
pfam00063. As regards Rab GTPases, these are important
regulators of vesicle formation, motility and fusion.
They share a fold in common with all Ras GTPases: this
is a six-stranded beta-sheet surrounded by five
alpha-helices.
Length = 162
Score = 26.3 bits (59), Expect = 5.1
Identities = 7/13 (53%), Positives = 10/13 (76%)
Query: 21 LLGPSGCGKTTLL 33
L+G G GK++LL
Sbjct: 4 LVGDGGVGKSSLL 16
>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated.
Length = 484
Score = 26.9 bits (60), Expect = 5.2
Identities = 10/17 (58%), Positives = 13/17 (76%), Gaps = 2/17 (11%)
Query: 15 GVTAYGLLGPSGCGKTT 31
GV + L+GP+G GKTT
Sbjct: 257 GV--FALMGPTGVGKTT 271
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional.
Length = 880
Score = 27.0 bits (60), Expect = 5.2
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 119 RVSFAVSLIHDPKILILDEPTVGLD 143
R++ ++ L + +LILDEPT LD
Sbjct: 802 RLALSLYLAGNIPLLILDEPTPFLD 826
>gnl|CDD|217429 pfam03215, Rad17, Rad17 cell cycle checkpoint protein.
Length = 490
Score = 26.9 bits (59), Expect = 5.2
Identities = 9/13 (69%), Positives = 11/13 (84%)
Query: 21 LLGPSGCGKTTLL 33
L GPSGCGK+T +
Sbjct: 50 LTGPSGCGKSTTV 62
>gnl|CDD|223203 COG0125, Tmk, Thymidylate kinase [Nucleotide transport and
metabolism].
Length = 208
Score = 26.5 bits (59), Expect = 5.4
Identities = 8/19 (42%), Positives = 9/19 (47%)
Query: 23 GPSGCGKTTLLSCIVNRLR 41
G G GKTT + RL
Sbjct: 10 GIDGAGKTTQAELLKERLE 28
>gnl|CDD|233821 TIGR02322, phosphon_PhnN, phosphonate metabolism
protein/1,5-bisphosphokinase (PRPP-forming) PhnN.
Members of this family resemble PhnN of phosphonate
utilization operons, where different such operons
confer the ability to use somewhat different profiles
of C-P bond-containing compounds (see PMID:15231805),
including phosphites as well as phosphonates. PhnN in
E. coli shows considerable homology to guanylate
kinases (EC 2.7.4.8), and has actually been shown to
act as a ribose 1,5-bisphosphokinase (PRPP forming).
This suggests an analogous kinase reaction for
phosphonate metabolism, converting
5-phosphoalpha-1-(methylphosphono)ribose to
methylphosphono-PRPP [Central intermediary metabolism,
Phosphorus compounds].
Length = 179
Score = 26.6 bits (59), Expect = 5.5
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHG 45
++GPSG GK TLL RL D
Sbjct: 6 VVGPSGAGKDTLLDYARARLAGDPR 30
>gnl|CDD|237182 PRK12727, PRK12727, flagellar biosynthesis regulator FlhF;
Provisional.
Length = 559
Score = 26.9 bits (59), Expect = 5.7
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 15 GVTAYGLLGPSGCGKTTLLSCIVNRLRLDH 44
GV A L+GP+G GKTT ++ + R H
Sbjct: 351 GVIA--LVGPTGAGKTTTIAKLAQRFAAQH 378
>gnl|CDD|205733 pfam13555, AAA_29, P-loop containing region of AAA domain.
Length = 60
Score = 24.8 bits (55), Expect = 5.7
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 11 TVIFGVTAYGLLGPSGCGKTTLL 33
T+ L GPSG GK+TL+
Sbjct: 16 TIPIDPKGTLLTGPSGSGKSTLI 38
>gnl|CDD|214595 smart00275, G_alpha, G protein alpha subunit. Subunit of G
proteins that contains the guanine nucleotide binding
site.
Length = 342
Score = 26.4 bits (59), Expect = 5.8
Identities = 10/26 (38%), Positives = 15/26 (57%), Gaps = 4/26 (15%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGS 46
LLG GK+T I+ ++R+ HG
Sbjct: 26 LLGAGESGKST----ILKQMRILHGD 47
>gnl|CDD|201213 pfam00406, ADK, Adenylate kinase.
Length = 186
Score = 26.5 bits (59), Expect = 5.8
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGS 46
LLGP G GK T IV + + H S
Sbjct: 1 LLGPPGAGKGTQAERIVQKYGIPHLS 26
>gnl|CDD|181681 PRK09183, PRK09183, transposase/IS protein; Provisional.
Length = 259
Score = 26.6 bits (59), Expect = 5.8
Identities = 10/12 (83%), Positives = 10/12 (83%)
Query: 21 LLGPSGCGKTTL 32
LLGPSG GKT L
Sbjct: 107 LLGPSGVGKTHL 118
>gnl|CDD|238900 cd01919, PEPCK, Phosphoenolpyruvate carboxykinase (PEPCK), a
critical gluconeogenic enzyme, catalyzes the first
committed step in the diversion of tricarboxylic acid
cycle intermediates toward gluconeogenesis. It catalyzes
the reversible decarboxylation and phosphorylation of
oxaloacetate to yield phosphoenolpyruvate and carbon
dioxide, using a nucleotide molecule (ATP or GTP) for
the phosphoryl transfer, and has a strict requirement
for divalent metal ions for activity. PEPCK's separate
into two phylogenetic groups based on their nucleotide
substrate specificity (the ATP-, and GTP-dependent
groups).
Length = 515
Score = 26.8 bits (59), Expect = 5.9
Identities = 8/10 (80%), Positives = 8/10 (80%)
Query: 23 GPSGCGKTTL 32
G SG GKTTL
Sbjct: 224 GLSGTGKTTL 233
>gnl|CDD|233369 TIGR01351, adk, adenylate kinase. Adenylate kinase (EC 2.7.4.3)
converts ATP + AMP to ADP + ADP, that is, uses ATP as a
phosphate donor for AMP. Most members of this family
are known or believed to be adenylate kinase. However,
some members accept other nucleotide triphosphates as
donors, may be unable to use ATP, and may fail to
complement adenylate kinase mutants. An example of a
nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10)
is a GTP:AMP phosphotransferase. This family is
designated subfamily rather than equivalog for this
reason [Purines, pyrimidines, nucleosides, and
nucleotides, Nucleotide and nucleoside
interconversions].
Length = 210
Score = 26.4 bits (59), Expect = 6.0
Identities = 13/28 (46%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSIS 48
LLGP G GK T I + L H IS
Sbjct: 4 LLGPPGSGKGTQAKRIAEKYGLPH--IS 29
>gnl|CDD|238979 cd02021, GntK, Gluconate kinase (GntK) catalyzes the phosphoryl
transfer from ATP to gluconate. The resulting product
gluconate-6-phoshate is an important precursor of
gluconate metabolism. GntK acts as a dimmer composed of
two identical subunits.
Length = 150
Score = 26.1 bits (58), Expect = 6.0
Identities = 12/55 (21%), Positives = 21/55 (38%), Gaps = 11/55 (20%)
Query: 23 GPSGCGKTTLLSCIVNRLRLDHGSISLSARTVR--DIGYMPQVGLMRSGALLAED 75
G SG GK+T+ + RL + D+ + M +G L ++
Sbjct: 6 GVSGSGKSTVGKALAERLGAPF---------IDGDDLHPPANIAKMAAGIPLNDE 51
>gnl|CDD|129721 TIGR00635, ruvB, Holliday junction DNA helicase, RuvB subunit.
All proteins in this family for which functions are
known are 5'-3' DNA helicases that, as part of a
complex with RuvA homologs serve as a 5'-3' Holliday
junction helicase. RuvA specifically binds Holliday
junctions as a sandwich of two tetramers and maintains
the configuration of the junction. It forms a complex
with two hexameric rings of RuvB, the subunit that
contains helicase activity. The complex drives
ATP-dependent branch migration of the Holliday junction
recombination intermediate. The endonuclease RuvC
resolves junctions [DNA metabolism, DNA replication,
recombination, and repair].
Length = 305
Score = 26.5 bits (59), Expect = 6.0
Identities = 11/20 (55%), Positives = 12/20 (60%)
Query: 21 LLGPSGCGKTTLLSCIVNRL 40
L GP G GKTTL I N +
Sbjct: 35 LYGPPGLGKTTLAHIIANEM 54
>gnl|CDD|238836 cd01673, dNK, Deoxyribonucleoside kinase (dNK) catalyzes the
phosphorylation of deoxyribonucleosides to yield
corresponding monophosphates (dNMPs). This family
consists of various deoxynucleoside kinases including
deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC
2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC
2.7.1.21) kinases. They are key enzymes in the salvage
of deoxyribonucleosides originating from extra- or
intracellular breakdown of DNA.
Length = 193
Score = 26.4 bits (59), Expect = 6.1
Identities = 7/22 (31%), Positives = 10/22 (45%)
Query: 23 GPSGCGKTTLLSCIVNRLRLDH 44
G G GK+TL + L +
Sbjct: 6 GNIGAGKSTLAKELAEHLGYEV 27
>gnl|CDD|237729 PRK14491, PRK14491, putative bifunctional molybdopterin-guanine
dinucleotide biosynthesis protein MobB/MoeA;
Provisional.
Length = 597
Score = 26.5 bits (59), Expect = 6.2
Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 5/26 (19%)
Query: 8 SLNTVIFGVTAYGLLGPSGCGKTTLL 33
L+ + G AY SG GKTTLL
Sbjct: 7 PLSIPLLGFCAY-----SGTGKTTLL 27
>gnl|CDD|236447 PRK09280, PRK09280, F0F1 ATP synthase subunit beta; Validated.
Length = 463
Score = 26.6 bits (60), Expect = 6.4
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISLSA----RT 53
GL G +G GKT L+ ++N + +HG S+ A RT
Sbjct: 148 GLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVGERT 185
>gnl|CDD|223133 COG0055, AtpD, F0F1-type ATP synthase, beta subunit [Energy
production and conversion].
Length = 468
Score = 26.4 bits (59), Expect = 6.4
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSIS 48
GL G +G GKT L+ ++N + +HG S
Sbjct: 151 GLFGGAGVGKTVLIQELINNIAKEHGGYS 179
>gnl|CDD|233062 TIGR00630, uvra, excinuclease ABC, A subunit. This family is a
member of the ABC transporter superfamily of proteins of
which all members for which functions are known except
the UvrA proteins are involved in the transport of
material through membranes. UvrA orthologs are involved
in the recognition of DNA damage as a step in nucleotide
excision repair. This family is based on the
phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis,
Stanford University) [DNA metabolism, DNA replication,
recombination, and repair].
Length = 925
Score = 26.5 bits (59), Expect = 6.8
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 3/32 (9%)
Query: 114 GGQQRRVSFAVSLIHD---PKILILDEPTVGL 142
GG+ +R+ A L + ILDEPT GL
Sbjct: 832 GGEAQRIKLAKELSKRSTGRTLYILDEPTTGL 863
>gnl|CDD|214349 CHL00060, atpB, ATP synthase CF1 beta subunit.
Length = 494
Score = 26.5 bits (59), Expect = 6.8
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISLSA 51
GL G +G GKT L+ ++N + HG +S+
Sbjct: 165 GLFGGAGVGKTVLIMELINNIAKAHGGVSVFG 196
>gnl|CDD|226054 COG3523, IcmF, Type VI protein secretion system component VasK
[Intracellular trafficking, secretion, and vesicular
transport].
Length = 1188
Score = 26.6 bits (59), Expect = 6.9
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 19 YGLLGPSGCGKTTLL 33
Y ++GP G GKTT L
Sbjct: 128 YMVIGPPGSGKTTAL 142
>gnl|CDD|235825 PRK06547, PRK06547, hypothetical protein; Provisional.
Length = 172
Score = 25.9 bits (57), Expect = 7.0
Identities = 8/10 (80%), Positives = 8/10 (80%)
Query: 23 GPSGCGKTTL 32
G SG GKTTL
Sbjct: 22 GRSGSGKTTL 31
>gnl|CDD|238553 cd01133, F1-ATPase_beta, F1 ATP synthase beta subunit,
nucleotide-binding domain. The F-ATPase is found in
bacterial plasma membranes, mitochondrial inner
membranes and in chloroplast thylakoid membranes. It has
also been found in the archaea Methanosarcina barkeri.
It uses a proton gradient to drive ATP synthesis and
hydrolyzes ATP to build the proton gradient. The
extrinisic membrane domain, F1, is composed of alpha,
beta, gamma, delta and epsilon subunits with a
stoichiometry of 3:3:1:1:1. The beta subunit of ATP
synthase is catalytic.
Length = 274
Score = 26.0 bits (58), Expect = 7.2
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSIS 48
GL G +G GKT L+ ++N + HG S
Sbjct: 73 GLFGGAGVGKTVLIMELINNIAKAHGGYS 101
>gnl|CDD|238687 cd01393, recA_like, RecA is a bacterial enzyme which has roles
in homologous recombination, DNA repair, and the
induction of the SOS response. RecA couples ATP
hydrolysis to DNA strand exchange. While prokaryotes
have a single RecA protein, eukaryotes have multiple
RecA homologs such as Rad51, DMC1 and Rad55/57.
Archaea have the RecA-like homologs radA and radB.
Length = 226
Score = 26.0 bits (58), Expect = 7.3
Identities = 8/17 (47%), Positives = 8/17 (47%), Gaps = 1/17 (5%)
Query: 23 GPSGCGKTTL-LSCIVN 38
G G GKT L L V
Sbjct: 26 GEFGSGKTQLCLQLAVE 42
>gnl|CDD|144608 pfam01078, Mg_chelatase, Magnesium chelatase, subunit ChlI.
Magnesium-chelatase is a three-component enzyme that
catalyzes the insertion of Mg2+ into protoporphyrin IX.
This is the first unique step in the synthesis of
(bacterio)chlorophyll. Due to this, it is thought that
Mg-chelatase has an important role in channelling
inter- mediates into the (bacterio)chlorophyll branch
in response to conditions suitable for photosynthetic
growth. ChlI and BchD have molecular weight between
38-42 kDa.
Length = 207
Score = 25.9 bits (58), Expect = 7.4
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 21 LLGPSGCGKTTLLSCI 36
++GP G GKT L +
Sbjct: 27 MIGPPGSGKTMLAKRL 42
>gnl|CDD|204242 pfam09439, SRPRB, Signal recognition particle receptor beta
subunit. The beta subunit of the signal recognition
particle receptor (SRP) is a transmembrane GTPase which
anchors the alpha subunit to the endoplasmic reticulum
membrane.
Length = 181
Score = 25.8 bits (57), Expect = 7.5
Identities = 10/37 (27%), Positives = 11/37 (29%), Gaps = 11/37 (29%)
Query: 7 SSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLD 43
SS VI G GKT+L L
Sbjct: 1 SSQPAVII-------AGLCDSGKTSLF----TLLTTG 26
>gnl|CDD|224985 COG2074, COG2074, 2-phosphoglycerate kinase [Carbohydrate transport
and metabolism].
Length = 299
Score = 26.2 bits (58), Expect = 7.6
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 23 GPSGCGKTTLLSCIVNRLRLDH 44
G SG GK+T+ + RL +
Sbjct: 96 GASGVGKSTIAGELARRLGIRS 117
>gnl|CDD|237498 PRK13768, PRK13768, GTPase; Provisional.
Length = 253
Score = 26.0 bits (58), Expect = 7.6
Identities = 24/74 (32%), Positives = 29/74 (39%), Gaps = 27/74 (36%)
Query: 22 LGPSGCGKTTLLS-------------CIVNRLRLDHGSISLSAR---------TVRDIGY 59
LG +G GKTTL IVN LD L T R+I
Sbjct: 8 LGTAGSGKTTLTKALSDWLEEQGYDVAIVN---LDPAVEYLPYTPDFDVRDYVTAREI-- 62
Query: 60 MPQVGLMRSGALLA 73
M + GL +GAL+A
Sbjct: 63 MKKYGLGPNGALIA 76
>gnl|CDD|235498 PRK05541, PRK05541, adenylylsulfate kinase; Provisional.
Length = 176
Score = 25.8 bits (57), Expect = 7.7
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLD-HGSISLSARTVRDI 57
+ G +G GKTT+ + RL+L I L +R+I
Sbjct: 12 ITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDELREI 49
>gnl|CDD|234711 PRK00279, adk, adenylate kinase; Reviewed.
Length = 215
Score = 25.9 bits (58), Expect = 7.8
Identities = 12/28 (42%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSIS 48
LLGP G GK T I + + H IS
Sbjct: 5 LLGPPGAGKGTQAKFIAEKYGIPH--IS 30
>gnl|CDD|222258 pfam13604, AAA_30, AAA domain. This family of domains contain a
P-loop motif that is characteristic of the AAA
superfamily. Many of the proteins in this family are
conjugative transfer proteins. There is a Walker A and
Walker B.
Length = 195
Score = 26.0 bits (58), Expect = 7.9
Identities = 9/42 (21%), Positives = 17/42 (40%), Gaps = 3/42 (7%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSI---SLSARTVRDIG 58
+ GP+G GKTT L + + + + + +G
Sbjct: 22 VVQGPAGTGKTTSLKAAREAWEAAGYRVIGLAPTGKAAKVLG 63
>gnl|CDD|110677 pfam01695, IstB_IS21, IstB-like ATP binding protein. This protein
contains an ATP/GTP binding P-loop motif. It is found
associated with IS21 family insertion sequences. The
function of this protein is unknown, but it may perform
a transposase function.
Length = 178
Score = 25.7 bits (57), Expect = 7.9
Identities = 24/93 (25%), Positives = 34/93 (36%), Gaps = 41/93 (44%)
Query: 21 LLGPSGCGKTTLLSCI-------------------VNRLRLDHGSISLSARTVR------ 55
LLGP G GKT L + V +L+ G L ART++
Sbjct: 52 LLGPPGVGKTHLACALGHQACRAGYSVLFTRTPDLVEQLKRARGDGRL-ARTLQRLAKAD 110
Query: 56 -----DIGYMPQVGLMRSGALLAEDSPSYLLEY 83
DIGY+P L++++ L E
Sbjct: 111 LLILDDIGYLP----------LSQEAAHLLFEL 133
>gnl|CDD|177952 PLN02318, PLN02318, phosphoribulokinase/uridine kinase.
Length = 656
Score = 26.4 bits (58), Expect = 7.9
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 15 GVTAYGLLGPSGCGKTTLLSCIVN 38
G+ G+ GPSG GKT ++N
Sbjct: 64 GIILVGVAGPSGAGKTVFTEKVLN 87
>gnl|CDD|206655 cd01862, Rab7, Rab GTPase family 7 (Rab7). Rab7 subfamily. Rab7
is a small Rab GTPase that regulates vesicular traffic
from early to late endosomal stages of the endocytic
pathway. The yeast Ypt7 and mammalian Rab7 are both
involved in transport to the vacuole/lysosome, whereas
Ypt7 is also required for homotypic vacuole fusion.
Mammalian Rab7 is an essential participant in the
autophagic pathway for sequestration and targeting of
cytoplasmic components to the lytic compartment.
Mammalian Rab7 is also proposed to function as a tumor
suppressor. GTPase activating proteins (GAPs) interact
with GTP-bound Rab and accelerate the hydrolysis of GTP
to GDP. Guanine nucleotide exchange factors (GEFs)
interact with GDP-bound Rabs to promote the formation
of the GTP-bound state. Rabs are further regulated by
guanine nucleotide dissociation inhibitors (GDIs),
which facilitate Rab recycling by masking C-terminal
lipid binding and promoting cytosolic localization.
Most Rab GTPases contain a lipid modification site at
the C-terminus, with sequence motifs CC, CXC, or CCX.
Lipid binding is essential for membrane attachment, a
key feature of most Rab proteins. Due to the presence
of truncated sequences in this CD, the lipid
modification site is not available for annotation.
Length = 172
Score = 25.7 bits (57), Expect = 8.0
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 21 LLGPSGCGKTTLLSCIVNR 39
+LG SG GKT+L++ VN+
Sbjct: 5 ILGDSGVGKTSLMNQYVNK 23
>gnl|CDD|215198 PLN02348, PLN02348, phosphoribulokinase.
Length = 395
Score = 26.3 bits (58), Expect = 8.0
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 5/30 (16%)
Query: 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTLL 33
A+ TV+ G+ A SGCGK+T +
Sbjct: 42 ALAADDGTVVIGLAA-----DSGCGKSTFM 66
>gnl|CDD|180750 PRK06921, PRK06921, hypothetical protein; Provisional.
Length = 266
Score = 25.9 bits (57), Expect = 8.1
Identities = 11/20 (55%), Positives = 12/20 (60%)
Query: 21 LLGPSGCGKTTLLSCIVNRL 40
LLG G GKT LL+ N L
Sbjct: 122 LLGQPGSGKTHLLTAAANEL 141
>gnl|CDD|234734 PRK00349, uvrA, excinuclease ABC subunit A; Reviewed.
Length = 943
Score = 26.2 bits (59), Expect = 8.1
Identities = 8/9 (88%), Positives = 8/9 (88%)
Query: 134 ILDEPTVGL 142
ILDEPT GL
Sbjct: 856 ILDEPTTGL 864
>gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter. This model
describes cyclic peptide transporter in bacteria.
Bacteria have elaborate pathways for the production of
toxins and secondary metabolites. Many such compounds,
including syringomycin and pyoverdine are synthesized on
non-ribosomal templates consisting of a multienzyme
complex. On several occasions the proteins of the
complex and transporter protein are present on the same
operon. Often times these compounds cross the biological
membrane by specific transporters. Syringomycin is an
amphipathic, cylclic lipodepsipeptide when inserted into
host causes formation of channels, permeable to variety
of cations. On the other hand, pyoverdine is a cyclic
octa-peptidyl dihydroxyquinoline, which is efficient in
sequestering iron for uptake [Transport and binding
proteins, Amino acids, peptides and amines, Transport
and binding proteins, Other].
Length = 555
Score = 26.5 bits (58), Expect = 8.1
Identities = 11/36 (30%), Positives = 15/36 (41%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRD 56
++G +GCGK+TL G I L V
Sbjct: 373 IVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSA 408
>gnl|CDD|217066 pfam02492, cobW, CobW/HypB/UreG, nucleotide-binding domain. This
domain is found in HypB, a hydrogenase expression /
formation protein, and UreG a urease accessory protein.
Both these proteins contain a P-loop nucleotide binding
motif. HypB has GTPase activity and is a guanine
nucleotide binding protein. It is not known whether
UreG binds GTP or some other nucleotide. Both enzymes
are involved in nickel binding. HypB can store nickel
and is required for nickel dependent hydrogenase
expression. UreG is required for functional
incorporation of the urease nickel metallocenter. GTP
hydrolysis may required by these proteins for nickel
incorporation into other nickel proteins. This family
of domains also contains P47K, a Pseudomonas
chlororaphis protein needed for nitrile hydratase
expression, and the cobW gene product, which may be
involved in cobalamin biosynthesis in Pseudomonas
denitrificans.
Length = 178
Score = 25.7 bits (57), Expect = 8.1
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 18 AYGLLGPSGCGKTTLLSCIVNRLRLD 43
L G G GKTTLL ++ + R
Sbjct: 2 VTVLTGFLGSGKTTLLEHLLEKNREG 27
>gnl|CDD|234806 PRK00635, PRK00635, excinuclease ABC subunit A; Provisional.
Length = 1809
Score = 26.3 bits (58), Expect = 8.2
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Query: 114 GGQQRRVSFAVSLIH---DPKILILDEPTVGL 142
GG+ +R+ A L+ P + +LDEPT GL
Sbjct: 812 GGEIQRLKLAYELLAPSKKPTLYVLDEPTTGL 843
>gnl|CDD|190347 pfam02562, PhoH, PhoH-like protein. PhoH is a cytoplasmic
protein and predicted ATPase that is induced by
phosphate starvation.
Length = 205
Score = 25.9 bits (58), Expect = 8.3
Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 7/33 (21%)
Query: 10 NTVIFGVTAYGLLGPSGCGKTTL-LSCIVNRLR 41
N ++FG+ GP+G GKT L ++ V+ L+
Sbjct: 19 NDIVFGI------GPAGTGKTYLAVAAAVDALK 45
>gnl|CDD|221955 pfam13173, AAA_14, AAA domain. This family of domains contain a
P-loop motif that is characteristic of the AAA
superfamily.
Length = 127
Score = 25.6 bits (57), Expect = 8.3
Identities = 8/16 (50%), Positives = 9/16 (56%)
Query: 18 AYGLLGPSGCGKTTLL 33
+ GP GKTTLL
Sbjct: 4 IIVITGPRQVGKTTLL 19
>gnl|CDD|238417 cd00819, PEPCK_GTP, Phosphoenolpyruvate carboxykinase (PEPCK), a
critical gluconeogenic enzyme, catalyzes the first
committed step in the diversion of tricarboxylic acid
cycle intermediates toward gluconeogenesis. It catalyzes
the reversible decarboxylation and phosphorylation of
oxaloacetate to yield phosphoenolpyruvate and carbon
dioxide, using a nucleotide molecule (GTP) for the
phosphoryl transfer, and has a strict requirement for
divalent metal ions for activity. PEPCK's separate into
two phylogenetic groups based on their nucleotide
substrate specificity, this model describes the
GTP-dependent group.
Length = 579
Score = 26.1 bits (58), Expect = 8.3
Identities = 7/9 (77%), Positives = 7/9 (77%)
Query: 24 PSGCGKTTL 32
PS CGKT L
Sbjct: 249 PSACGKTNL 257
>gnl|CDD|224337 COG1419, FlhF, Flagellar GTP-binding protein [Cell motility and
secretion].
Length = 407
Score = 26.2 bits (58), Expect = 8.4
Identities = 9/13 (69%), Positives = 11/13 (84%)
Query: 21 LLGPSGCGKTTLL 33
L+GP+G GKTT L
Sbjct: 208 LVGPTGVGKTTTL 220
>gnl|CDD|216791 pfam01926, MMR_HSR1, 50S ribosome-binding GTPase. The
full-length GTPase protein is required for the complete
activity of the protein of interacting with the 50S
ribosome and binding of both adenine and guanine
nucleotides, with a preference for guanine nucleotide.
Length = 117
Score = 25.3 bits (56), Expect = 8.6
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 20 GLLGPSGCGKTTLLSCIVNR 39
L+G GK+TL++ +
Sbjct: 3 ALVGRPNVGKSTLINALTGA 22
>gnl|CDD|218024 pfam04317, DUF463, YcjX-like family, DUF463. These proteins
possess a P-loop motif.
Length = 443
Score = 26.0 bits (58), Expect = 9.0
Identities = 19/59 (32%), Positives = 24/59 (40%), Gaps = 16/59 (27%)
Query: 15 GVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLA 73
VT GL S GKT ++ +VN+L HG G +P R G LL
Sbjct: 4 AVT--GL---SRAGKTAFITSLVNQLL--HGGNG---------GRLPLFEAAREGRLLG 46
>gnl|CDD|206641 cd00157, Rho, Ras homology family (Rho) of small guanosine
triphosphatases (GTPases). Members of the Rho (Ras
homology) family include RhoA, Cdc42, Rac, Rnd, Wrch1,
RhoBTB, and Rop. There are 22 human Rho family members
identified currently. These proteins are all involved
in the reorganization of the actin cytoskeleton in
response to external stimuli. They also have roles in
cell transformation by Ras in cytokinesis, in focal
adhesion formation and in the stimulation of
stress-activated kinase. These various functions are
controlled through distinct effector proteins and
mediated through a GTP-binding/GTPase cycle involving
three classes of regulating proteins: GAPs
(GTPase-activating proteins), GEFs (guanine nucleotide
exchange factors), and GDIs (guanine nucleotide
dissociation inhibitors). Most Rho proteins contain a
lipid modification site at the C-terminus, with a
typical sequence motif CaaX, where a = an aliphatic
amino acid and X = any amino acid. Lipid binding is
essential for membrane attachment, a key feature of
most Rho proteins. Since crystal structures often lack
C-terminal residues, this feature is not available for
annotation in many of the CDs in the hierarchy.
Length = 171
Score = 25.6 bits (57), Expect = 9.4
Identities = 6/15 (40%), Positives = 8/15 (53%)
Query: 21 LLGPSGCGKTTLLSC 35
++G GKT LL
Sbjct: 5 VVGDGAVGKTCLLIS 19
>gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter
proteins. ABC-type Class 2 contains systems involved in
cellular processes other than transport. These families
are characterized by the fact that the ABC subunit is
made up of duplicated, fused ABC modules (ABC2). No
known transmembrane proteins or domains are associated
with these proteins.
Length = 162
Score = 25.8 bits (57), Expect = 9.4
Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 4/35 (11%)
Query: 114 GGQQRRVS----FAVSLIHDPKILILDEPTVGLDP 144
GG++ + A++ + + ILDE GLDP
Sbjct: 80 GGEKELSALALILALASLKPRPLYILDEIDRGLDP 114
>gnl|CDD|234619 PRK00080, ruvB, Holliday junction DNA helicase RuvB; Reviewed.
Length = 328
Score = 25.9 bits (58), Expect = 9.5
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 21 LLGPSGCGKTTLLSCIVNRL 40
L GP G GKTTL + I N +
Sbjct: 56 LYGPPGLGKTTLANIIANEM 75
>gnl|CDD|238550 cd01130, VirB11-like_ATPase, Type IV secretory pathway component
VirB11, and related ATPases. The homohexamer, VirB11 is
one of eleven Vir proteins, which are required for
T-pilus biogenesis and virulence in the transfer of
T-DNA from the Ti (tumor-inducing) plasmid of bacterial
to plant cells. The pilus is a fibrous cell surface
organelle, which mediates adhesion between bacteria
during conjugative transfer or between bacteria and
host eukaryotic cells during infection. VirB11- related
ATPases include the archaeal flagella biosynthesis
protein and the pilus assembly proteins CpaF/TadA and
TrbB. This alignment contains the C-terminal domain,
which is the ATPase.
Length = 186
Score = 25.7 bits (57), Expect = 9.5
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 23 GPSGCGKTTLLSCI 36
G +G GKTTLL+ +
Sbjct: 32 GGTGSGKTTLLNAL 45
>gnl|CDD|129465 TIGR00368, TIGR00368, Mg chelatase-related protein. The N-terminal
end matches very strongly a pfam Mg_chelatase domain
[Unknown function, General].
Length = 499
Score = 26.0 bits (57), Expect = 9.5
Identities = 9/16 (56%), Positives = 10/16 (62%)
Query: 21 LLGPSGCGKTTLLSCI 36
L GP G GKT L S +
Sbjct: 216 LFGPPGSGKTMLASRL 231
>gnl|CDD|222165 pfam13481, AAA_25, AAA domain. This AAA domain is found in a
wide variety of presumed DNA repair proteins.
Length = 154
Score = 25.7 bits (57), Expect = 9.6
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 21 LLGPSGCGKTTLLSCIV 37
L G G GK+TL +
Sbjct: 38 LAGAPGTGKSTLALDLA 54
>gnl|CDD|237358 PRK13351, PRK13351, elongation factor G; Reviewed.
Length = 687
Score = 26.1 bits (58), Expect = 9.8
Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 5/45 (11%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDH--GSISLSARTVRDIGYMPQ 62
G+L GKTTL I+ H G + TV D +MPQ
Sbjct: 12 GILAHIDAGKTTLTERILFYTGKIHKMGEVE-DGTTVTD--WMPQ 53
>gnl|CDD|238549 cd01129, PulE-GspE, PulE/GspE The type II secretory pathway is the
main terminal branch of the general secretory pathway
(GSP). It is responsible for the export the majority of
Gram-negative bacterial exoenzymes and toxins. PulE is a
cytoplasmic protein of the GSP, which contains an ATP
binding site and a tetracysteine motif. This subgroup
also includes PillB and HofB.
Length = 264
Score = 25.7 bits (57), Expect = 10.0
Identities = 10/25 (40%), Positives = 16/25 (64%), Gaps = 3/25 (12%)
Query: 19 YGLL---GPSGCGKTTLLSCIVNRL 40
+G++ GP+G GKTT L ++ L
Sbjct: 80 HGIILVTGPTGSGKTTTLYSALSEL 104
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.139 0.400
Gapped
Lambda K H
0.267 0.0740 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,447,072
Number of extensions: 667135
Number of successful extensions: 1775
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1708
Number of HSP's successfully gapped: 821
Length of query: 149
Length of database: 10,937,602
Length adjustment: 88
Effective length of query: 61
Effective length of database: 7,034,450
Effective search space: 429101450
Effective search space used: 429101450
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (24.6 bits)