RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10767
(149 letters)
>1sgw_A Putative ABC transporter; structural genomics, P protein structure
initiative, southeast collaboratory for S genomics,
secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Length = 214
Score = 101 bits (255), Expect = 5e-28
Identities = 34/137 (24%), Positives = 57/137 (41%), Gaps = 19/137 (13%)
Query: 19 YGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV----RDIGYMPQ-VGLMRSGALLA 73
GP+G GKTTLL I L+ G I + + I ++P+ + + R +
Sbjct: 38 VNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEIIVPRK--ISV 95
Query: 74 EDSPSYLLEYYNCSTLEDVFLYLCEQDQILFSL------VGSESAFGGQQRRVSFAVSLI 127
ED + Y ++ + E + +G S G RRV A +L+
Sbjct: 96 EDYLKAVASLYGVKVNKNEIMDALE----SVEVLDLKKKLGELS--QGTIRRVQLASTLL 149
Query: 128 HDPKILILDEPTVGLDP 144
+ +I +LD+P V +D
Sbjct: 150 VNAEIYVLDDPVVAIDE 166
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint
center for structural genomics, JCSG, protein structu
initiative, PSI; 2.10A {Thermotoga maritima} SCOP:
c.37.1.12
Length = 256
Score = 87.6 bits (218), Expect = 4e-22
Identities = 38/140 (27%), Positives = 67/140 (47%), Gaps = 18/140 (12%)
Query: 19 YGLLGPSGCGKTTLLSCIVNRLRLDHGSISLS-------ARTVR-DIGYMPQ-VGLMRSG 69
+GL+GP+G GKTT L I ++ G +++ VR I Y+P+ G R+
Sbjct: 44 FGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRN- 102
Query: 70 ALLAEDSPSYLLEYYNCSTLE-----DVFLYLCEQDQILFSLVGSESAFGGQQRRVSFAV 124
+ + ++ +Y S+ E + + + + V + S G R++ A
Sbjct: 103 -MQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYS--KGMVRKLLIAR 159
Query: 125 SLIHDPKILILDEPTVGLDP 144
+L+ +P++ ILDEPT GLD
Sbjct: 160 ALMVNPRLAILDEPTSGLDV 179
Score = 32.1 bits (74), Expect = 0.045
Identities = 8/38 (21%), Positives = 18/38 (47%)
Query: 63 VGLMRSGALLAEDSPSYLLEYYNCSTLEDVFLYLCEQD 100
+ L+ +G ++ + L E Y +E+VF + +
Sbjct: 216 IALIHNGTIVETGTVEELKERYKAQNIEEVFEEVVKCS 253
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural
genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Length = 263
Score = 87.0 bits (216), Expect = 7e-22
Identities = 34/147 (23%), Positives = 56/147 (38%), Gaps = 35/147 (23%)
Query: 19 YGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRD----IGYMPQVGLMRSGALLAE 74
+LGP+G GKTTLL I + L G+I ++ VR I Y +
Sbjct: 33 VIILGPNGSGKTTLLRAI-SGLLPYSGNIFINGMEVRKIRNYIRYSTNL----------- 80
Query: 75 DSPSYLLEYYNCSTLEDVFLYL----CEQDQI--LFSLVGSESAF---------GGQQRR 119
+Y + + + V+LY ++D + + GQ
Sbjct: 81 -PEAYEIGV---TVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVL 136
Query: 120 VSFAVSLIHDPKILILDEPTVGLDPVL 146
V +++L P+I+ LDEP +D
Sbjct: 137 VRTSLALASQPEIVGLDEPFENVDAAR 163
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase,
translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Length = 538
Score = 81.6 bits (202), Expect = 4e-19
Identities = 33/127 (25%), Positives = 60/127 (47%), Gaps = 8/127 (6%)
Query: 19 YGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAEDSPS 78
G+LGP+G GKTT +V + D GS++ + + Y PQ + + +
Sbjct: 297 IGILGPNGIGKTTFARILVGEITADEGSVTPEKQ---ILSYKPQRIFPNYDGTVQQYLEN 353
Query: 79 YLLEYYNCST--LEDVFLYLCEQDQILFSLVGSESAFGGQQRRVSFAVSLIHDPKILILD 136
+ + S+ E+V L ++L S V S GG+ +++ A +L + + +LD
Sbjct: 354 ASKDALSTSSWFFEEVTKRL-NLHRLLESNVNDLS--GGELQKLYIAATLAKEADLYVLD 410
Query: 137 EPTVGLD 143
+P+ LD
Sbjct: 411 QPSSYLD 417
Score = 64.3 bits (157), Expect = 5e-13
Identities = 25/147 (17%), Positives = 52/147 (35%), Gaps = 28/147 (19%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQ------VGLMRSGALLA 73
G+LG +G GKTT+L + + + G + + + S L
Sbjct: 29 GVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNEL-- 86
Query: 74 EDSPSYLLEYYNCSTLEDVFL---YLCEQDQI------LFSLVGSESAF--------GGQ 116
+ ++Y + + + + + L+ + + GG
Sbjct: 87 --KIVHKIQYVE-YASKFLKGTVNEILTKIDERGKKDEVKELLNMTNLWNKDANILSGGG 143
Query: 117 QRRVSFAVSLIHDPKILILDEPTVGLD 143
+R+ A SL+ + + I D+P+ LD
Sbjct: 144 LQRLLVAASLLREADVYIFDQPSSYLD 170
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur
cluster, adenosine diphosphate, nucleotide-binding; HET:
ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Length = 607
Score = 79.3 bits (196), Expect = 2e-18
Identities = 32/125 (25%), Positives = 53/125 (42%), Gaps = 8/125 (6%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAE-DSPS 78
G++GP+G GKTT + + G + Y+ LL++ DS
Sbjct: 386 GIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYELLSKIDSSK 445
Query: 79 YLLEYYNCSTLEDVFLYLCEQDQILFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEP 138
+Y L+ + + + V S GG+ +RV+ A +L+ D I +LDEP
Sbjct: 446 LNSNFYKTELLKPLGI-----IDLYDRNVEDLS--GGELQRVAIAATLLRDADIYLLDEP 498
Query: 139 TVGLD 143
+ LD
Sbjct: 499 SAYLD 503
Score = 63.5 bits (155), Expect = 9e-13
Identities = 34/153 (22%), Positives = 54/153 (35%), Gaps = 42/153 (27%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISLS------------------ARTVRDIGYMP 61
G++GP+G GKTT + + +L + + S +I +
Sbjct: 121 GIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVV 180
Query: 62 Q-----------VGLMRSGALLAEDSPSYLLEYYNCSTLEDVFLYLCEQDQILFSLVGSE 110
+ G +R L D E LE+V D+ L L
Sbjct: 181 KPQYVDLLPKAVKGKVREL-LKKVDEVGKFEEVVKELELENVL------DRELHQL---- 229
Query: 111 SAFGGQQRRVSFAVSLIHDPKILILDEPTVGLD 143
S GG+ +RV+ A +L+ DEP+ LD
Sbjct: 230 S--GGELQRVAIAAALLRKAHFYFFDEPSSYLD 260
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette,
hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Length = 279
Score = 75.3 bits (186), Expect = 2e-17
Identities = 34/160 (21%), Positives = 57/160 (35%), Gaps = 49/160 (30%)
Query: 19 YGLLGPSGCGKTTLLSCIVNRLRLDHGSISL-------SARTVRD----IGYMPQ----- 62
+ L G +G GKTTLL+ + G+++L + IG++
Sbjct: 50 WILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEK 109
Query: 63 ------------------VGLMRSGALLAEDSPSYLLEYYNCSTLEDVFLYLCEQDQILF 104
+G+ + + LL+ S
Sbjct: 110 FQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQ------------- 156
Query: 105 SLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDP 144
+G S G+++RV A +L+ P++LILDEP GLD
Sbjct: 157 QYIGYLS--TGEKQRVMIARALMGQPQVLILDEPAAGLDF 194
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET:
ATP; NMR {Saccharomyces cerevisiae}
Length = 608
Score = 74.7 bits (184), Expect = 1e-16
Identities = 29/130 (22%), Positives = 53/130 (40%), Gaps = 16/130 (12%)
Query: 19 YGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQ----VGLMRSGALLAE 74
++G +G GKTTL+ + L+ D G ++ PQ L +
Sbjct: 381 LVMMGENGTGKTTLIKLLAGALKPDEGQDIPK----LNVSMKPQKIAPKFPGTVRQLFFK 436
Query: 75 D-SPSYLLEYYNCSTLEDVFLYLCEQDQILFSLVGSESAFGGQQRRVSFAVSLIHDPKIL 133
+L + ++ + + D I+ V S GG+ +RV+ ++L I
Sbjct: 437 KIRGQFLNPQFQTDVVKPLRI-----DDIIDQEVQHLS--GGELQRVAIVLALGIPADIY 489
Query: 134 ILDEPTVGLD 143
++DEP+ LD
Sbjct: 490 LIDEPSAYLD 499
Score = 62.7 bits (153), Expect = 2e-12
Identities = 25/148 (16%), Positives = 52/148 (35%), Gaps = 23/148 (15%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAEDSPSY 79
GL+G +G GK+T L + + + + G I Y L + ED
Sbjct: 107 GLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKA 166
Query: 80 LL----EYYNCSTLEDVFLYLCEQDQI-----------LFSLVGSESAF--------GGQ 116
++ ++ + E ++ ++ E+ GG+
Sbjct: 167 IIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEKLSGGE 226
Query: 117 QRRVSFAVSLIHDPKILILDEPTVGLDP 144
+R + +S + + + + DEP+ LD
Sbjct: 227 LQRFAIGMSCVQEADVYMFDEPSSYLDV 254
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein
biosynthesis, nucleotide-binding, phosphorylation, RNA-
binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces
cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Length = 986
Score = 72.4 bits (177), Expect = 7e-16
Identities = 29/133 (21%), Positives = 50/133 (37%), Gaps = 24/133 (18%)
Query: 19 YGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAEDSPS 78
YG+ GP+GCGK+TL+ I N Y+ + S +
Sbjct: 464 YGICGPNGCGKSTLMRAIANG---QVDGFPTQEEC--RTVYVEH-------DIDGTHSDT 511
Query: 79 YLLEYYNCSTLEDVFLYLCEQDQILFSLVGSESAF--------GGQQRRVSFAVSLIHDP 130
+L++ E L ++ GG + +++ A +++ +
Sbjct: 512 SVLDFVF----ESGVGTKEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNA 567
Query: 131 KILILDEPTVGLD 143
IL+LDEPT LD
Sbjct: 568 DILLLDEPTNHLD 580
Score = 48.1 bits (114), Expect = 2e-07
Identities = 23/116 (19%), Positives = 43/116 (37%), Gaps = 9/116 (7%)
Query: 35 CIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALL------AEDSPSYLLEYYNCST 88
+ + S D ++P+ L+ S + + E S
Sbjct: 820 SFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKE 879
Query: 89 LEDVFLYL-CEQDQILFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLD 143
+E+ L + + + S + S GGQ+ ++ A P +++LDEPT LD
Sbjct: 880 IEEHCSMLGLDPEIVSHSRIRGLS--GGQKVKLVLAAGTWQRPHLIVLDEPTNYLD 933
Score = 40.8 bits (95), Expect = 7e-05
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQ 62
++GP+G GK+TL++ + L G + R I Y+ Q
Sbjct: 703 AVIGPNGAGKSTLINVLTGELLPTSGEVYTH-ENCR-IAYIKQ 743
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis,
hydrolyase/translation complex; HET: ADP; 1.90A
{Pyrococcus furiosus}
Length = 538
Score = 71.9 bits (177), Expect = 9e-16
Identities = 32/125 (25%), Positives = 53/125 (42%), Gaps = 8/125 (6%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAE-DSPS 78
G++GP+G GKTT + + G I Y+ LL++ D+
Sbjct: 316 GIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYIKADYEGTVYELLSKIDASK 375
Query: 79 YLLEYYNCSTLEDVFLYLCEQDQILFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEP 138
+Y L+ + + + V S GG+ +RV+ A +L+ D I +LDEP
Sbjct: 376 LNSNFYKTELLKPLGI-----IDLYDREVNELS--GGELQRVAIAATLLRDADIYLLDEP 428
Query: 139 TVGLD 143
+ LD
Sbjct: 429 SAYLD 433
Score = 54.2 bits (131), Expect = 1e-09
Identities = 30/152 (19%), Positives = 54/152 (35%), Gaps = 40/152 (26%)
Query: 20 GLLGPSGCGKTTLLSCIVNRL-------------RLDHGSIS-----LSARTVRDIGYMP 61
G++GP+G GK+T + + +L + + +I +
Sbjct: 51 GIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVV 110
Query: 62 Q------VGLMRSG----ALLAEDSPSYLLEYYNCSTLEDVFLYLCEQDQILFSLVGSES 111
+ + G L D L E LE+V ++ + L S
Sbjct: 111 KPQYVDLIPKAVKGKVIELLKKADETGKLEEVVKALELENVL------EREIQHL----S 160
Query: 112 AFGGQQRRVSFAVSLIHDPKILILDEPTVGLD 143
GG+ +RV+ A +L+ + DEP+ LD
Sbjct: 161 --GGELQRVAIAAALLRNATFYFFDEPSSYLD 190
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative
iron chelatin ABC transporter, nucleotide binding
domain; 2.40A {Haemophilus influenzae}
Length = 253
Score = 68.7 bits (169), Expect = 4e-15
Identities = 35/145 (24%), Positives = 57/145 (39%), Gaps = 40/145 (27%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISLSAR--------------TVRDI---GYMPQ 62
+LG +GCGK+TLL ++ R G I + +V DI G
Sbjct: 35 AVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQFFSSPFAYSVLDIVLMGRSTH 94
Query: 63 VGLMRS-GA---LLAEDSPSYLLEYYNCSTLEDVFLYLCEQDQILFSLVGSESAFGGQQR 118
+ + +A + L+Y N + L S S GGQ++
Sbjct: 95 INTFAKPKSHDYQVAMQA----LDYLNLTHLAK-------------REFTSLS--GGQRQ 135
Query: 119 RVSFAVSLIHDPKILILDEPTVGLD 143
+ A ++ + K+++LDEPT LD
Sbjct: 136 LILIARAIASECKLILLDEPTSALD 160
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding
domain, ABC motor domain, ferric iron transport, cell
inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Length = 359
Score = 67.2 bits (165), Expect = 3e-14
Identities = 44/156 (28%), Positives = 64/156 (41%), Gaps = 53/156 (33%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV-----------RDIGYMPQ------- 62
++G SGCGKTTLL C+ + D G ISLS +T+ R +GY+ Q
Sbjct: 35 IIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPH 94
Query: 63 --V------GLMRSGALLAEDSP--SYLLEYYNCSTLEDVFLYLCEQDQILFSLVGSESA 112
V GL A++ +LE L +
Sbjct: 95 LTVYRNIAYGLGNGKGRTAQERQRIEAMLE--------------------LTGISELAGR 134
Query: 113 F-----GGQQRRVSFAVSLIHDPKILILDEPTVGLD 143
+ GGQQ+R + A +L DP++++LDEP LD
Sbjct: 135 YPHELSGGQQQRAALARALAPDPELILLDEPFSALD 170
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane,
membrane, transmembrane, transport, ATP- binding,
hydrolase, nucleotide-binding, periplasm; HET: 1PE;
2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Length = 249
Score = 56.8 bits (138), Expect = 1e-10
Identities = 32/158 (20%), Positives = 50/158 (31%), Gaps = 54/158 (34%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISL--------SARTV-RDIGYMPQ-------- 62
L+GP+G GK+TLL+ + + GSI SA + Y+ Q
Sbjct: 30 HLVGPNGAGKSTLLARM-AGMTSGKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFAT 88
Query: 63 -----VGLMRS----GALLAEDSPSYLLEYYNCSTLEDVFLYLCEQDQILFSLVGSESAF 113
+ L + LL + + S
Sbjct: 89 PVWHYLTLHQHDKTRTELLND-----VAGALALDDKLG-------------RSTNQLS-- 128
Query: 114 GGQQRRVSFAVSL-------IHDPKILILDEPTVGLDP 144
GG+ +RV A + ++L+LDEP LD
Sbjct: 129 GGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDV 166
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt
transport, TM02 hydrolase, inner membrane, membrane,
nucleotide-binding; 2.30A {Thermotoga maritima}
Length = 266
Score = 55.7 bits (135), Expect = 3e-10
Identities = 38/153 (24%), Positives = 60/153 (39%), Gaps = 46/153 (30%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSIS-------------------------LSARTV 54
+ G +G GK+TLL + + G + A V
Sbjct: 37 LVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERV 96
Query: 55 R-DIGYMPQ-VGLMRSGALLAEDSPSYLLEYYNCSTLEDVFLYLCE-QDQILFSLVGSES 111
++ + + R L + + +E V L +D++ F L S
Sbjct: 97 FDEVAFAVKNFYPDRDPVPLVKKA------------MEFVGLDFDSFKDRVPFFL----S 140
Query: 112 AFGGQQRRVSFAVSLIHDPKILILDEPTVGLDP 144
GG++RRV+ A ++H+P ILILDEP VGLD
Sbjct: 141 --GGEKRRVAIASVIVHEPDILILDEPLVGLDR 171
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane
protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Length = 240
Score = 55.2 bits (134), Expect = 3e-10
Identities = 33/146 (22%), Positives = 60/146 (41%), Gaps = 39/146 (26%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV-------RDIGYMPQVGLMRSGALLA 73
LLGP+G GK+ L I ++ D G + L+ + R IG++PQ
Sbjct: 29 LLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQ----------- 77
Query: 74 EDSPSYLLEYYNCSTLEDV-F-LYLCEQDQI---------LFSLVGSESAFGGQ-----Q 117
Y L + + S ++ + L E+ + + + +
Sbjct: 78 ----DYAL-FPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGER 132
Query: 118 RRVSFAVSLIHDPKILILDEPTVGLD 143
+RV+ A +L+ P++L+LDEP +D
Sbjct: 133 QRVALARALVIQPRLLLLDEPLSAVD 158
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell
membrane, cobalt transport, hydrolase, ION transport;
2.30A {Clostridium perfringens atcc 13124}
Length = 275
Score = 54.9 bits (133), Expect = 6e-10
Identities = 39/172 (22%), Positives = 58/172 (33%), Gaps = 80/172 (46%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSI-------SLSARTVRDIGYMPQVGLMRSGALL 72
+LG +G GK+TL L+ G I S + + + +G+
Sbjct: 38 AILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRE--SIGI------- 88
Query: 73 AEDSPSYLLEYYNCSTLEDVFLYLCEQD---QILFSLVGSESAFG--------------- 114
VF QD Q+ + V + +FG
Sbjct: 89 -------------------VF-----QDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRV 124
Query: 115 ----------------------GQQRRVSFAVSLIHDPKILILDEPTVGLDP 144
GQ++RV+ A L+ +PK+LILDEPT GLDP
Sbjct: 125 DNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDP 176
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I
ABC type importer, methionine uptake transporter,
membrane protein; HET: ADP; 2.90A {Escherichia coli}
PDB: 3tuj_C 3tuz_C* 3dhw_C
Length = 366
Score = 53.1 bits (128), Expect = 3e-09
Identities = 46/154 (29%), Positives = 71/154 (46%), Gaps = 42/154 (27%)
Query: 19 YGLLGPSGCGKTTLLSCIVNRL-RLDHGSI--------SLSARTVR----DIGYMPQ-VG 64
YG++G SG GK+TL+ C+ N L R GS+ +LS + IG + Q
Sbjct: 57 YGVIGASGAGKSTLIRCV-NLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFN 115
Query: 65 LMRSGALLAEDSPSYLLEYYNCSTLEDVFLYLCEQDQI------LFSLVG---SESAF-- 113
L+ S + + LE N +D++ L SLVG ++
Sbjct: 116 LLSSRT--VFGNVALPLELDNTP-----------KDEVKRRVTELLSLVGLGDKHDSYPS 162
Query: 114 ---GGQQRRVSFAVSLIHDPKILILDEPTVGLDP 144
GGQ++RV+ A +L +PK+L+ D+ T LDP
Sbjct: 163 NLSGGQKQRVAIARALASNPKVLLCDQATSALDP 196
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI,
protein structure initiative, midwest center for
structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga
maritima} SCOP: c.37.1.12
Length = 240
Score = 51.7 bits (125), Expect = 6e-09
Identities = 42/150 (28%), Positives = 64/150 (42%), Gaps = 36/150 (24%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSISL---------SARTVRD-IGYMPQ----VGLM 66
L+G +G GKTT LS I +R G I + R I +P+ +
Sbjct: 37 LIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPEL 96
Query: 67 ------RSGALLAEDSPSYLLEYYNCSTLEDVFLY---LCE-QDQILFSLVGSESAFGGQ 116
GA +D LE +F L E Q L G+ S GG+
Sbjct: 97 TVYENLMMGAYNRKDKEGIK------RDLEWIFSLFPRLKERLKQ----LGGTLS--GGE 144
Query: 117 QRRVSFAVSLIHDPKILILDEPTVGLDPVL 146
Q+ ++ +L+ PK+L++DEP++GL P+L
Sbjct: 145 QQMLAIGRALMSRPKLLMMDEPSLGLAPIL 174
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter,
ABCB6, nucleotide binding domain, heme BIOS transport
protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A*
3nhb_A*
Length = 306
Score = 48.4 bits (116), Expect = 1e-07
Identities = 37/152 (24%), Positives = 63/152 (41%), Gaps = 43/152 (28%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRL---DHGSISLSARTVRD---------IGYMPQVGLMRS 68
L+GPSG GK+T+L + R G I + + + IG +PQ
Sbjct: 85 LVGPSGAGKSTILRLL---FRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQ------ 135
Query: 69 GALLAEDSPSYLLEYYNCS-TLEDVFLYLCEQDQI----------LFSLVG------SES 111
+L D+ + + Y + ++V + I + VG S
Sbjct: 136 DTVLFNDTIADNIRYGRVTAGNDEVE-AAAQAAGIHDAIMAFPEGYRTQVGERGLKLS-- 192
Query: 112 AFGGQQRRVSFAVSLIHDPKILILDEPTVGLD 143
GG+++RV+ A +++ P I++LDE T LD
Sbjct: 193 --GGEKQRVAIARTILKAPGIILLDEATSALD 222
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein;
ATP-binding, nucleotide-binding, membrane,
transmembrane, transport protein; 3.00A {Methanosarcina
acetivorans} SCOP: b.40.6.3 c.37.1.12
Length = 348
Score = 48.3 bits (116), Expect = 1e-07
Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 7/49 (14%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV-------RDIGYMPQ 62
+LGP+G GKT L I D G I L + V DI ++ Q
Sbjct: 31 ILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQ 79
Score = 42.5 bits (101), Expect = 1e-05
Identities = 17/30 (56%), Positives = 24/30 (80%)
Query: 114 GGQQRRVSFAVSLIHDPKILILDEPTVGLD 143
GG+Q+RV+ A +L+ +PKIL+LDEP LD
Sbjct: 130 GGEQQRVALARALVTNPKILLLDEPLSALD 159
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET:
ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A*
2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Length = 263
Score = 46.4 bits (111), Expect = 5e-07
Identities = 17/31 (54%), Positives = 23/31 (74%)
Query: 114 GGQQRRVSFAVSLIHDPKILILDEPTVGLDP 144
GGQ +RV+ A +L +PKI++ DEPT LDP
Sbjct: 162 GGQAQRVAIARALAMEPKIMLFDEPTSALDP 192
Score = 39.1 bits (92), Expect = 2e-04
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 21 LLGPSGCGKTTLLSCIVNRL-RLDHGSISLSARTVRD 56
++GPSG GK+T L C+ N L D G I + ++
Sbjct: 55 VIGPSGSGKSTFLRCL-NLLEDFDEGEIIIDGINLKA 90
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP,
cyclic peptide, membrane protein; 3.80A {Mus musculus}
PDB: 3g61_A* 3g60_A*
Length = 1284
Score = 46.6 bits (111), Expect = 7e-07
Identities = 16/31 (51%), Positives = 24/31 (77%)
Query: 114 GGQQRRVSFAVSLIHDPKILILDEPTVGLDP 144
GGQ++R++ A +L+ +PKIL+LDE T LD
Sbjct: 529 GGQKQRIAIARALVRNPKILLLDEATSALDT 559
Score = 42.7 bits (101), Expect = 1e-05
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 114 GGQQRRVSFAVSLIHDPKILILDEPTVGLDP 144
GGQ++R++ A +L+ P IL+LDE T LD
Sbjct: 1174 GGQKQRIAIARALVRQPHILLLDEATSALDT 1204
Score = 32.3 bits (74), Expect = 0.055
Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 6/41 (14%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRL---DHGSISLSARTVRDI 57
L+G SGCGK+T++ + R GS+ L + ++ +
Sbjct: 1063 ALVGSSGCGKSTVVQLL---ERFYDPMAGSVFLDGKEIKQL 1100
Score = 31.9 bits (73), Expect = 0.068
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 6/40 (15%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRL---DHGSISLSARTVRDI 57
L+G SGCGK+T + + RL G +S+ + +R I
Sbjct: 421 LVGNSGCGKSTTVQLM---QRLYDPLDGMVSIDGQDIRTI 457
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta
motif, beta sandwich, ligand binding protein; 1.90A
{Alicyclobacillus acidocaldarius}
Length = 355
Score = 46.1 bits (110), Expect = 8e-07
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 7/49 (14%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV-------RDIGYMPQ 62
LLGPSG GKTT+L I R G + + + V R++G + Q
Sbjct: 46 LLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVGLVFQ 94
Score = 41.8 bits (99), Expect = 3e-05
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 114 GGQQRRVSFAVSLIHDPKILILDEPTVGLD 143
GGQQ+RV+ A +L P++L+ DEP +D
Sbjct: 148 GGQQQRVALARALAPRPQVLLFDEPFAAID 177
>3tif_A Uncharacterized ABC transporter ATP-binding prote;
nucleotide-binding domain, ABC transporter ATPase; HET:
ADP; 1.80A {Methanocaldococcus jannaschii dsm
2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Length = 235
Score = 45.2 bits (108), Expect = 1e-06
Identities = 15/30 (50%), Positives = 23/30 (76%)
Query: 114 GGQQRRVSFAVSLIHDPKILILDEPTVGLD 143
GGQQ+RV+ A +L ++P I++ D+PT LD
Sbjct: 148 GGQQQRVAIARALANNPPIILADQPTWALD 177
Score = 28.7 bits (65), Expect = 0.62
Identities = 8/11 (72%), Positives = 10/11 (90%)
Query: 23 GPSGCGKTTLL 33
GPSG GK+T+L
Sbjct: 38 GPSGSGKSTML 48
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding
protein; beta-core domain; HET: ADP; 1.60A
{Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB:
1gaj_A 1g9x_A*
Length = 257
Score = 44.8 bits (107), Expect = 2e-06
Identities = 13/34 (38%), Positives = 23/34 (67%)
Query: 114 GGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLS 147
GGQ + V +L+ +PK++++DEP G+ P L+
Sbjct: 156 GGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLA 189
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP;
1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Length = 262
Score = 44.5 bits (106), Expect = 2e-06
Identities = 18/31 (58%), Positives = 23/31 (74%)
Query: 114 GGQQRRVSFAVSLIHDPKILILDEPTVGLDP 144
GGQQ+RVS A +L +P +L+ DEPT LDP
Sbjct: 156 GGQQQRVSIARALAMEPDVLLFDEPTSALDP 186
Score = 40.2 bits (95), Expect = 8e-05
Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 21 LLGPSGCGKTTLLSCIVNRL-RLDHGSISLSARTVR 55
++G SG GK+T L CI N L + G+I ++ + +
Sbjct: 37 IIGSSGSGKSTFLRCI-NFLEKPSEGAIIVNGQNIN 71
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein;
structural genomics; 1.70A {Aquifex aeolicus} PDB:
2pcl_A
Length = 224
Score = 44.0 bits (105), Expect = 3e-06
Identities = 15/30 (50%), Positives = 22/30 (73%)
Query: 114 GGQQRRVSFAVSLIHDPKILILDEPTVGLD 143
GG+Q+RV+ A +L ++P +L DEPT LD
Sbjct: 143 GGEQQRVAIARALANEPILLFADEPTGNLD 172
Score = 30.2 bits (69), Expect = 0.17
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 23 GPSGCGKTTLLSCI 36
G SG GK+TLL +
Sbjct: 37 GASGSGKSTLLYIL 50
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION
channel, transport protein, casse protein; 2.00A {Homo
sapiens} PDB: 2onj_A* 2hyd_A
Length = 578
Score = 44.5 bits (106), Expect = 3e-06
Identities = 16/30 (53%), Positives = 22/30 (73%)
Query: 114 GGQQRRVSFAVSLIHDPKILILDEPTVGLD 143
GGQ++R+S A +++P ILILDE T LD
Sbjct: 480 GGQKQRLSIARIFLNNPPILILDEATSALD 509
Score = 32.9 bits (76), Expect = 0.031
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 11/53 (20%)
Query: 20 GLLGPSGCGKTTLLSCIVNRL-RLDHGSISLSARTVRD---------IGYMPQ 62
+G SG GK+TL++ I R + G I + ++D IG + Q
Sbjct: 371 AFVGMSGGGKSTLINLI-PRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQ 422
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB;
ABC-transporter, transport protein; HET: ADP; 1.60A
{Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A*
2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Length = 247
Score = 43.6 bits (104), Expect = 4e-06
Identities = 16/30 (53%), Positives = 24/30 (80%)
Query: 114 GGQQRRVSFAVSLIHDPKILILDEPTVGLD 143
GGQ++R++ A +L+++PKILI DE T LD
Sbjct: 148 GGQRQRIAIARALVNNPKILIFDEATSALD 177
Score = 33.2 bits (77), Expect = 0.017
Identities = 13/55 (23%), Positives = 23/55 (41%), Gaps = 15/55 (27%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRL---DHGSISLSARTVRD---------IGYMPQ 62
G++G SG GK+TL I R ++G + + + +G + Q
Sbjct: 39 GIVGRSGSGKSTLTKLI---QRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQ 90
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP;
2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Length = 271
Score = 43.7 bits (104), Expect = 5e-06
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 114 GGQQRRVSFAVSLIHDPKILILDEPTVGLDP 144
GGQ++ V+ A +LI P++LILD T LD
Sbjct: 159 GGQRQAVALARALIRKPRLLILDNATSALDA 189
Score = 31.3 bits (72), Expect = 0.070
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 8/45 (17%)
Query: 16 VTAYGLLGPSGCGKTTLLSCIVNRLRL---DHGSISLSARTVRDI 57
VTA L+GP+G GK+T+ + + L G + L +
Sbjct: 47 VTA--LVGPNGSGKSTVAALL---QNLYQPTGGKVLLDGEPLVQY 86
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease
protein; asymmetric dimer, tetramer, P-glycoprotein;
HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Length = 243
Score = 43.2 bits (103), Expect = 5e-06
Identities = 15/30 (50%), Positives = 23/30 (76%)
Query: 114 GGQQRRVSFAVSLIHDPKILILDEPTVGLD 143
GGQ++R++ A + + +PKIL+LDE T LD
Sbjct: 142 GGQRQRLAIARAFLRNPKILMLDEATASLD 171
Score = 35.1 bits (82), Expect = 0.004
Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 15/54 (27%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRL---DHGSISLSARTVRD---------IGYMPQ 62
GPSG GK+T+ S + R G I++ + + + IG++ Q
Sbjct: 33 FAGPSGGGKSTIFSLL---ERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQ 83
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding
cassette, transport protein; HET: ATP; 2.05A {Homo
sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A*
1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A*
1xfa_A*
Length = 290
Score = 43.5 bits (103), Expect = 7e-06
Identities = 35/126 (27%), Positives = 53/126 (42%), Gaps = 20/126 (15%)
Query: 23 GPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGAL------LAEDS 76
G +G GKT+LL I+ L G I S R I + Q + G + ++ D
Sbjct: 71 GSTGAGKTSLLMMIMGELEPSEGKIKHSGR----ISFCSQNSWIMPGTIKENIIGVSYDE 126
Query: 77 PSYLLEYYNCSTLEDVFLYLCEQDQILFSLVG----SESAFGGQQRRVSFAVSLIHDPKI 132
Y C ED E+D ++G + S GGQ+ R+S A ++ D +
Sbjct: 127 YRYRSVIKACQLEED-ISKFAEKDN---IVLGEGGITLS--GGQRARISLARAVYKDADL 180
Query: 133 LILDEP 138
+LD P
Sbjct: 181 YLLDSP 186
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural
genomics, structural genomics consortium, SGC; 2.20A
{Plasmodium yoelii yoelii str}
Length = 260
Score = 42.6 bits (101), Expect = 1e-05
Identities = 38/151 (25%), Positives = 61/151 (40%), Gaps = 42/151 (27%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRL-D-HGSISLSARTVRD---------IGYMPQVGLMRSG 69
L+G +G GK+T+ + R D G I + + V IG +PQ
Sbjct: 51 LVGHTGSGKSTIAKLL---YRFYDAEGDIKIGGKNVNKYNRNSIRSIIGIVPQ------D 101
Query: 70 ALLAEDSPSYLLEYYNCS-TLEDVFLYLCEQ--------DQILFSLVGSESAFG------ 114
+L ++ Y + Y T E+V + D I ++ G
Sbjct: 102 TILFNETIKYNILYGKLDATDEEV-----IKATKSAQLYDFIEALPKKWDTIVGNKGMKL 156
Query: 115 --GQQRRVSFAVSLIHDPKILILDEPTVGLD 143
G+++R++ A L+ DPKI+I DE T LD
Sbjct: 157 SGGERQRIAIARCLLKDPKIVIFDEATSSLD 187
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance
regulator, residues 1193-1427...; CFTR, ABC transporter,
nucleotide binding domain, NBD; HET: B44; 2.70A {Homo
sapiens}
Length = 390
Score = 42.8 bits (101), Expect = 1e-05
Identities = 39/144 (27%), Positives = 61/144 (42%), Gaps = 25/144 (17%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGY---------MPQVGLMRSGA 70
GLLG +G GK+TLLS + RL G I + + I +PQ + SG
Sbjct: 51 GLLGRTGSGKSTLLSAFL-RLLNTEGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGT 109
Query: 71 L------LAEDSPSYLLEYYNCSTLEDVFL--YLCEQDQILFSLV--GSESAFGGQQRRV 120
A S + + ++V L + + L ++ G G ++ +
Sbjct: 110 FRKNLDPNAAHSDQEIWK-----VADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLM 164
Query: 121 SFAVSLIHDPKILILDEPTVGLDP 144
A S++ KIL+LDEP+ LDP
Sbjct: 165 CLARSVLSKAKILLLDEPSAHLDP 188
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC
transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo
sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A
1ckz_A
Length = 229
Score = 42.2 bits (100), Expect = 1e-05
Identities = 35/127 (27%), Positives = 53/127 (41%), Gaps = 21/127 (16%)
Query: 23 GPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGAL-------LAED 75
G +G GKT+LL I+ L G I S R I + Q + G + ++ D
Sbjct: 41 GSTGAGKTSLLMMIMGELEPSEGKIKHSGR----ISFCSQFSWIMPGTIKENIIFGVSYD 96
Query: 76 SPSYLLEYYNCSTLEDVFLYLCEQDQILFSLVG----SESAFGGQQRRVSFAVSLIHDPK 131
Y C ED E+D ++G + S GGQ+ R+S A ++ D
Sbjct: 97 EYRYRSVIKACQLEED-ISKFAEKDN---IVLGEGGITLS--GGQRARISLARAVYKDAD 150
Query: 132 ILILDEP 138
+ +LD P
Sbjct: 151 LYLLDSP 157
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; HET: ANP; 3.70A {Salmonella
typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A*
3b5z_A* 3b5w_A
Length = 582
Score = 41.8 bits (99), Expect = 2e-05
Identities = 16/30 (53%), Positives = 22/30 (73%)
Query: 114 GGQQRRVSFAVSLIHDPKILILDEPTVGLD 143
GGQ++R++ A +L+ D ILILDE T LD
Sbjct: 483 GGQRQRIAIARALLRDSPILILDEATSALD 512
Score = 30.6 bits (70), Expect = 0.19
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 6/40 (15%)
Query: 21 LLGPSGCGKTTLLSCIVNRLR---LDHGSISLSARTVRDI 57
L+G SG GK+T+ S I R +D G I + +R+
Sbjct: 374 LVGRSGSGKSTIASLI---TRFYDIDEGHILMDGHDLREY 410
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; 5.50A {Vibrio cholerae}
Length = 582
Score = 41.8 bits (99), Expect = 3e-05
Identities = 16/30 (53%), Positives = 22/30 (73%)
Query: 114 GGQQRRVSFAVSLIHDPKILILDEPTVGLD 143
GGQ++RV+ A +L+ D +LILDE T LD
Sbjct: 483 GGQRQRVAIARALLRDAPVLILDEATSALD 512
Score = 29.9 bits (68), Expect = 0.28
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 21 LLGPSGCGKTTLLSCIVNRL-RLDHGSISLSARTVRDI 57
L+G SG GK+T+ + R +D GSI L VRD
Sbjct: 374 LVGRSGSGKSTIANLF-TRFYDVDSGSICLDGHDVRDY 410
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold,
coiled-coils, ATP binding, DNA bindi MRE11, replication;
HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A*
1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Length = 339
Score = 41.2 bits (96), Expect = 4e-05
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 6/37 (16%)
Query: 114 GGQQRRVSFAVSL------IHDPKILILDEPTVGLDP 144
GG++ + A L + +LILDEPT LD
Sbjct: 251 GGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDE 287
Score = 28.9 bits (64), Expect = 0.65
Identities = 8/22 (36%), Positives = 14/22 (63%), Gaps = 2/22 (9%)
Query: 15 GVTAYGLLGPSGCGKTTLLSCI 36
G+ ++G +G GK++LL I
Sbjct: 24 GINL--IIGQNGSGKSSLLDAI 43
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins,
MRP1/ABCC1, nucleotide-binding domain, ATP- binding,
hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Length = 237
Score = 41.0 bits (97), Expect = 4e-05
Identities = 32/127 (25%), Positives = 61/127 (48%), Gaps = 21/127 (16%)
Query: 23 GPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGAL-------LAED 75
G GCGK++LLS ++ + G +++ + Y+PQ +++ +L +
Sbjct: 38 GQVGCGKSSLLSALLAEMDKVEGHVAIKGS----VAYVPQQAWIQNDSLRENILFGCQLE 93
Query: 76 SPSYLLEYYNCSTLEDVFLYLCEQDQILFSLVG----SESAFGGQQRRVSFAVSLIHDPK 131
P Y C+ L D+ + L D+ + +G + S GGQ++RVS A ++ +
Sbjct: 94 EPYYRSVIQACALLPDLEI-LPSGDR---TEIGEKGVNLS--GGQKQRVSLARAVYSNAD 147
Query: 132 ILILDEP 138
I + D+P
Sbjct: 148 IYLFDDP 154
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial;
membrane protein, mitochondrial transport; HET: ACP LMT
CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Length = 595
Score = 40.3 bits (95), Expect = 9e-05
Identities = 16/30 (53%), Positives = 24/30 (80%)
Query: 114 GGQQRRVSFAVSLIHDPKILILDEPTVGLD 143
GGQ++R++ A +L+ +PKIL+LDE T LD
Sbjct: 486 GGQKQRIAIARALLKNPKILLLDEATSALD 515
Score = 32.6 bits (75), Expect = 0.033
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 15/54 (27%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRL---DHGSISLSARTVRD---------IGYMPQ 62
L+GPSG GK+T+LS + LRL G+ISL +R IG + Q
Sbjct: 375 LVGPSGSGKSTVLSLL---LRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQ 425
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 40.2 bits (93), Expect = 1e-04
Identities = 17/129 (13%), Positives = 35/129 (27%), Gaps = 34/129 (26%)
Query: 15 GVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIG---YMP-QVGLMRSGA 70
V G+LG GKT ++ M ++ +
Sbjct: 152 NVLIDGVLG---SGKTW-----------------VALDVCLSYKVQCKMDFKIFWLNLK- 190
Query: 71 LLAEDSPSYLLEYYN--CSTLEDVFLYLCEQDQILFSLVGSESAFGGQQRRVSFAVSLIH 128
+SP +LE ++ + + + + S Q S +
Sbjct: 191 --NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI-----QAELRRLLKSKPY 243
Query: 129 DPKILILDE 137
+ +L+L
Sbjct: 244 ENCLLVLLN 252
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase,
ATP-binding cassette, ATPase, transport protein; 1.45A
{Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB:
1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Length = 353
Score = 39.6 bits (93), Expect = 1e-04
Identities = 10/16 (62%), Positives = 12/16 (75%)
Query: 21 LLGPSGCGKTTLLSCI 36
+LGPSG GKTT + I
Sbjct: 36 ILGPSGAGKTTFMRII 51
Score = 36.1 bits (84), Expect = 0.002
Identities = 16/30 (53%), Positives = 22/30 (73%)
Query: 114 GGQQRRVSFAVSLIHDPKILILDEPTVGLD 143
G QQ+RV+ A +L+ DP +L+LDEP LD
Sbjct: 143 GAQQQRVALARALVKDPSLLLLDEPFSNLD 172
>2it1_A 362AA long hypothetical maltose/maltodextrin transport
ATP-binding protein; structural genomics, NPPSFA; 1.94A
{Pyrococcus horikoshii}
Length = 362
Score = 39.1 bits (92), Expect = 2e-04
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 7/44 (15%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV-------RDI 57
LLGPSG GK+TLL I + G I + V R++
Sbjct: 34 LLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNV 77
Score = 32.6 bits (75), Expect = 0.035
Identities = 16/30 (53%), Positives = 24/30 (80%)
Query: 114 GGQQRRVSFAVSLIHDPKILILDEPTVGLD 143
GGQQ+RV+ A +L+ +P++L+LDEP LD
Sbjct: 136 GGQQQRVAIARALVKEPEVLLLDEPLSNLD 165
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport,
maltose uptake and regulation, sugar binding protein;
1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3
c.37.1.12 PDB: 2d62_A
Length = 372
Score = 38.4 bits (90), Expect = 4e-04
Identities = 18/43 (41%), Positives = 20/43 (46%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQV 63
LLGPSGCGKTT L I G I + + V D V
Sbjct: 34 LLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFV 76
Score = 29.1 bits (66), Expect = 0.49
Identities = 11/30 (36%), Positives = 21/30 (70%)
Query: 114 GGQQRRVSFAVSLIHDPKILILDEPTVGLD 143
GGQ++RV+ +++ P++ ++DEP LD
Sbjct: 142 GGQRQRVALGRAIVRKPQVFLMDEPLSNLD 171
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport,
alpha and beta proteins (A/B) TM0421, structural
genomics, NPPSFA; 2.11A {Thermotoga maritima}
Length = 359
Score = 38.3 bits (90), Expect = 4e-04
Identities = 12/16 (75%), Positives = 13/16 (81%)
Query: 21 LLGPSGCGKTTLLSCI 36
LLGPSGCGKTT L +
Sbjct: 34 LLGPSGCGKTTTLLML 49
Score = 31.0 bits (71), Expect = 0.13
Identities = 16/30 (53%), Positives = 22/30 (73%)
Query: 114 GGQQRRVSFAVSLIHDPKILILDEPTVGLD 143
GGQQ+RV+ A +L+ PK+L+ DEP LD
Sbjct: 136 GGQQQRVALARALVKQPKVLLFDEPLSNLD 165
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active
transport, sugar uptake and regulation, transport
protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3
b.40.6.3 c.37.1.12 PDB: 1vci_A*
Length = 372
Score = 38.4 bits (90), Expect = 4e-04
Identities = 19/44 (43%), Positives = 20/44 (45%), Gaps = 7/44 (15%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV-------RDI 57
LLGPSGCGKTT L I G I R V R+I
Sbjct: 42 LLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNI 85
Score = 29.9 bits (68), Expect = 0.27
Identities = 13/30 (43%), Positives = 23/30 (76%)
Query: 114 GGQQRRVSFAVSLIHDPKILILDEPTVGLD 143
GGQ++RV+ A +++ +P +L++DEP LD
Sbjct: 144 GGQRQRVAVARAIVVEPDVLLMDEPLSNLD 173
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral
membrane protein, ATPase, ABC transporter, membrane
transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia
coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A*
3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A*
1q1b_A
Length = 381
Score = 37.1 bits (87), Expect = 0.001
Identities = 11/16 (68%), Positives = 13/16 (81%)
Query: 21 LLGPSGCGKTTLLSCI 36
+GPSGCGK+TLL I
Sbjct: 34 FVGPSGCGKSTLLRMI 49
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication;
1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B*
1us8_B*
Length = 148
Score = 35.1 bits (81), Expect = 0.002
Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 10/62 (16%)
Query: 88 TLEDVFLYLCEQDQILFSLVGSESAFGGQQR-----RVSFAVSLIHDPKILILDEPTVGL 142
+F+ +++ L L G E R++ ++ L + +LILDEPT L
Sbjct: 40 NKVRLFVVWEGKERPLTFLSGGER-----IALGLAFRLAMSLYLAGEISLLILDEPTPYL 94
Query: 143 DP 144
D
Sbjct: 95 DE 96
>2qgz_A Helicase loader, putative primosome component; structural genomics,
PSI-2, protein structure initiative; 2.40A
{Streptococcus pyogenes serotype M3}
Length = 308
Score = 36.0 bits (83), Expect = 0.003
Identities = 9/37 (24%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDI 57
L G G GK+ LL+ + + L + +S +
Sbjct: 157 LYGDMGIGKSYLLAAMAHEL-SEKKGVSTTLLHFPSF 192
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding
protein; 2.30A {Archaeoglobus fulgidus}
Length = 221
Score = 35.7 bits (83), Expect = 0.003
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 15 GVTAYGLLGPSGCGKTTLLSCIVNRLRLDH 44
G A ++G G GKT L+ + R+ +
Sbjct: 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEV 58
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic
region; yeast protein, ATP binding protein; 2.25A
{Saccharomyces cerevisiae} SCOP: c.37.1.6
Length = 290
Score = 35.8 bits (81), Expect = 0.003
Identities = 24/137 (17%), Positives = 44/137 (32%), Gaps = 14/137 (10%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAEDSPSY 79
GP G GK+ I N L +G D Y+ ++ +
Sbjct: 35 FFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKLNEQFKNN---K 91
Query: 80 LLEY------YNCSTLEDVFLYL-----CEQDQILFSLVGSESAFGGQQRRVSFAVSLIH 128
LL+ ++ L++V + + +S F G+ R +
Sbjct: 92 LLQGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL 151
Query: 129 DPKILILDEPTVGLDPV 145
I IL+ +G +P+
Sbjct: 152 PVDIFILEGWFLGFNPI 168
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and
beta protein; HET: GSP; 1.90A {Methanocaldococcus
jannaschii} PDB: 2hf8_A*
Length = 226
Score = 35.3 bits (82), Expect = 0.003
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 15 GVTAYGLLGPSGCGKTTLLSCIVNRLRLDH 44
GV A+ +G G GKT L+ +++ L+ +
Sbjct: 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKY 66
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.8 bits (82), Expect = 0.003
Identities = 22/121 (18%), Positives = 42/121 (34%), Gaps = 37/121 (30%)
Query: 40 LRLDHGSISLS----------ARTVRD--IGYMPQVGLMRSGALLAEDSPSYLLEYYNCS 87
L L HGS+ A +++ +P+ + A+D P+ E
Sbjct: 9 LTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEP----TEGFAADDEPTTPAE----- 59
Query: 88 TLEDVFL-YLCEQ---------DQILFSLVGS-ESAF-GGQQRRV-SFAVSLIHDPKILI 134
L FL Y+ DQ+L + E+ + G + + A L+ + +
Sbjct: 60 -LVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGND--IHALAAKLLQENDTTL 116
Query: 135 L 135
+
Sbjct: 117 V 117
Score = 28.5 bits (63), Expect = 0.92
Identities = 13/44 (29%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Query: 106 LVGSESAFGGQQRRVSFAVSLIHDPKILILD-EPTVGLDPVLSF 148
LV + S F Q + F L + D EPT + V F
Sbjct: 21 LVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKF 64
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system
kinase, STRU genomics, joint center for structural
genomics, JCSG; 1.95A {Silicibacter SP}
Length = 208
Score = 34.7 bits (80), Expect = 0.005
Identities = 19/117 (16%), Positives = 45/117 (38%), Gaps = 12/117 (10%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAEDSPSY 79
L G G GK+TL + + L + D ++ L G L + +P
Sbjct: 26 ALSGAPGSGKSTLSNPLAAALSAQGLPAEV---VPMDGFHLDNRLLEPRGLLPRKGAP-- 80
Query: 80 LLEYYNCSTLEDVFLYLCEQDQILFSLVGSESAFGGQQRRVSFAVSLIHDPKILILD 136
E ++ + + L Q+++++ L + ++ A + + ++ I++
Sbjct: 81 --ETFDFEGFQRLCHALKHQERVIYPLFDRA-----RDIAIAGAAEVGPECRVAIIE 130
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR;
2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB:
1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Length = 207
Score = 34.5 bits (80), Expect = 0.006
Identities = 10/28 (35%), Positives = 14/28 (50%), Gaps = 4/28 (14%)
Query: 23 GPSGCGKTTLLSCIVNRLRLDHGSISLS 50
GPS GK+T+ V LR ++ S
Sbjct: 27 GPSAVGKSTV----VRCLRERIPNLHFS 50
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288;
multidrug transporter, transport protein; HET: ANP;
2.90A {Thermotoga maritima}
Length = 598
Score = 34.8 bits (81), Expect = 0.007
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 115 GQQRRVSFAVSLIHDPKILILDEPT 139
GQ++ ++ + + +PKILILDE T
Sbjct: 495 GQRQLLAITRAFLANPKILILDEAT 519
Score = 31.8 bits (73), Expect = 0.062
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 8/39 (20%)
Query: 23 GPSGCGKTTLLSCIVNRL-R---LDHGSISLSARTVRDI 57
GP+G GKTT IVN L R +D G I + +R I
Sbjct: 388 GPTGSGKTT----IVNLLMRFYDVDRGQILVDGIDIRKI 422
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding,
nucleoside kinase, nucleotide-binding; 2.50A {Homo
sapiens} PDB: 2uvq_A*
Length = 245
Score = 34.4 bits (79), Expect = 0.007
Identities = 9/41 (21%), Positives = 19/41 (46%), Gaps = 5/41 (12%)
Query: 3 DVSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLD 43
++ S+ + GV+ G + GK+T+ I+ L +
Sbjct: 17 NLYFQSMRPFLIGVS-----GGTASGKSTVCEKIMELLGQN 52
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain,
PIN-tower interface, coupling hydrolysis to DNA
unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Length = 459
Score = 34.6 bits (79), Expect = 0.008
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 21 LLGPSGCGKTTLLSCIVNRL-RLDHGSISLSART 53
+ GP+G G TTL I+ L I L+A T
Sbjct: 50 INGPAGTGATTLTKFIIEALISTGETGIILAAPT 83
>1xjc_A MOBB protein homolog; structural genomics, midwest center for
structural GEN PSI, protein structure initiative, MCSG;
2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Length = 169
Score = 33.9 bits (77), Expect = 0.008
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 19 YGLLGPSGCGKTTLLSCIVNRLR 41
+ ++G GKTTL+ V
Sbjct: 7 WQVVGYKHSGKTTLMEKWVAAAV 29
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase;
2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A*
2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Length = 219
Score = 34.1 bits (79), Expect = 0.008
Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
Query: 20 GLL----GPSGCGKTTLLSCIVNRLRLDHGSISLSART 53
G L PSG GK++L+ ++ L +S+S T
Sbjct: 16 GTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTT 53
>2w58_A DNAI, primosome component (helicase loader); ATP-binding,
nucleotide-binding, hydrolase; HET: ADP; 2.50A
{Geobacillus kaustophilus HTA426}
Length = 202
Score = 33.9 bits (78), Expect = 0.009
Identities = 11/25 (44%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHG 45
L G G GKT LL+ I N L
Sbjct: 59 LHGSFGVGKTYLLAAIANEL-AKRN 82
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB);
structural genomics, PSI, protein structure initiative;
2.10A {Archaeoglobus fulgidus}
Length = 171
Score = 33.5 bits (76), Expect = 0.011
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 19 YGLLGPSGCGKTTLLSCIVNRLR 41
++G S GKTTL++ ++ LR
Sbjct: 5 LSIVGTSDSGKTTLITRMMPILR 27
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides,
nucleotides, transferase; HET: 5GP; 1.85A {Coxiella
burnetii}
Length = 205
Score = 33.6 bits (78), Expect = 0.012
Identities = 12/35 (34%), Positives = 14/35 (40%), Gaps = 8/35 (22%)
Query: 20 GLL----GPSGCGKTTLLSCIVNRLRLDHGSISLS 50
L PSG GKT+L V L I +S
Sbjct: 7 ANLFIISAPSGAGKTSL----VRALVKALAEIKIS 37
>3ec2_A DNA replication protein DNAC; helicase loader, replication
initiation factor, ATP-binding, nucleotide-binding;
HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Length = 180
Score = 33.5 bits (77), Expect = 0.012
Identities = 7/25 (28%), Positives = 10/25 (40%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHG 45
+G G GKT L + + G
Sbjct: 43 FVGSPGVGKTHLAVATLKAIYEKKG 67
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter,
transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Length = 587
Score = 34.1 bits (79), Expect = 0.013
Identities = 15/30 (50%), Positives = 23/30 (76%)
Query: 114 GGQQRRVSFAVSLIHDPKILILDEPTVGLD 143
GGQ++R+S A +L+ PK+LILD+ T +D
Sbjct: 482 GGQKQRLSIARALVKKPKVLILDDCTSSVD 511
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed
alpha-beta fold, elongated beta-sheet, walker A motif,
P-loop structural motif; 1.90A {Escherichia coli} SCOP:
c.37.1.10 PDB: 1p9n_A
Length = 174
Score = 33.3 bits (75), Expect = 0.015
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 19 YGLLGPSGCGKTTLLSCIVNRLR 41
SG GKTTLL ++ L
Sbjct: 9 LAFAAWSGTGKTTLLKKLIPALC 31
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding
HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens}
SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A*
1xrj_A*
Length = 252
Score = 33.3 bits (76), Expect = 0.016
Identities = 8/33 (24%), Positives = 16/33 (48%), Gaps = 5/33 (15%)
Query: 11 TVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLD 43
+ GV+ G + GK+++ + IV L +
Sbjct: 22 PFLIGVS-----GGTASGKSSVCAKIVQLLGQN 49
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural
genomics, BSGC structure funded by NIH, protein
structure initiative, PSI; HET: GDP; 2.80A {Thermotoga
maritima} SCOP: b.40.4.5 c.37.1.8
Length = 301
Score = 32.9 bits (76), Expect = 0.025
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSIS 48
+ G SG GK++LL+ I L+L +S
Sbjct: 174 MAGLSGVGKSSLLNAINPGLKLRVSEVS 201
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI,
protein structure initiative; 1.90A {Geobacillus
stearothermophilus} SCOP: c.37.1.6
Length = 201
Score = 32.7 bits (75), Expect = 0.028
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 23 GPSGCGKTTLLSCIVNRLRLDHGSISL 49
G S GKTTL + + LR S+ +
Sbjct: 29 GLSRSGKTTLANQLSQTLREQGISVCV 55
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with
oligonucleotide binding fold, central GTP binding
domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5
c.37.1.8
Length = 307
Score = 32.5 bits (75), Expect = 0.033
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSIS 48
G SG GK++LL+ I L L IS
Sbjct: 178 FAGQSGVGKSSLLNAISPELGLRTNEIS 205
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P;
2.25A {Thermus thermophilus} PDB: 3asy_A*
Length = 211
Score = 32.2 bits (74), Expect = 0.036
Identities = 9/43 (20%), Positives = 16/43 (37%), Gaps = 5/43 (11%)
Query: 7 SSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISL 49
S+ + G+ G + GKTTL + L + +
Sbjct: 2 SAPKPFVIGIA-----GGTASGKTTLAQALARTLGERVALLPM 39
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD,
CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A*
1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Length = 806
Score = 32.5 bits (74), Expect = 0.042
Identities = 9/23 (39%), Positives = 12/23 (52%), Gaps = 2/23 (8%)
Query: 20 GLL--GPSGCGKTTLLSCIVNRL 40
G+L GP G GKT + + N
Sbjct: 240 GILLYGPPGTGKTLIARAVANET 262
Score = 28.2 bits (63), Expect = 1.0
Identities = 16/47 (34%), Positives = 19/47 (40%), Gaps = 10/47 (21%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSIS----------LSARTVRDI 57
GP GCGKT L I N + + SI S VR+I
Sbjct: 516 FYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREI 562
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide-
binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Length = 207
Score = 31.7 bits (73), Expect = 0.047
Identities = 14/34 (41%), Positives = 16/34 (47%), Gaps = 5/34 (14%)
Query: 20 GLL----GPSGCGKTTLLSCIVNRLRLDHG-SIS 48
GLL GPSG GK T+ I + SIS
Sbjct: 6 GLLIVLSGPSGVGKGTVRKRIFEDPSTSYKYSIS 39
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A
{Mus musculus} SCOP: c.37.1.1
Length = 198
Score = 31.7 bits (73), Expect = 0.047
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 7/34 (20%)
Query: 23 GPSGCGKTTLLSCIVNRLRLDHGSI---SLSART 53
GPSG GK+TL + +L +H SI S+S T
Sbjct: 11 GPSGAGKSTL----LKKLFQEHSSIFGFSVSHTT 40
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography,
emerald biostructures, ATP-binding, cytoplasm,
nucleotide-binding; HET: 5GP; 1.95A {Anaplasma
phagocytophilum}
Length = 231
Score = 31.8 bits (73), Expect = 0.051
Identities = 13/41 (31%), Positives = 25/41 (60%), Gaps = 5/41 (12%)
Query: 20 GLL----GPSGCGKTTLLSCIVNRLRLD-HGSISLSARTVR 55
G++ PSGCGKTT+ + ++ + + + S+S++ R R
Sbjct: 27 GVILVLSSPSGCGKTTVANKLLEKQKNNIVKSVSVTTRAAR 67
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A
{Rhodobacter sphaeroides} SCOP: c.37.1.6
Length = 290
Score = 31.9 bits (72), Expect = 0.053
Identities = 10/37 (27%), Positives = 13/37 (35%), Gaps = 5/37 (13%)
Query: 8 SLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDH 44
S I VT G SG G +T+ R +
Sbjct: 2 SKKHPIISVT-----GSSGAGTSTVKHTFDQIFRREG 33
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta
proteins (A/B), protein binding, transferase,
phosphotransferase; HET: ADP; 1.76A {Homo sapiens} PDB:
3iik_A 3iil_A* 3iim_A* 1rkb_A
Length = 180
Score = 31.5 bits (71), Expect = 0.055
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSIS 48
L G G GKTTL + ++ L + ++
Sbjct: 16 LTGTPGVGKTTLGKELASKSGLKYINVG 43
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics
consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A
{Homo sapiens}
Length = 197
Score = 31.8 bits (73), Expect = 0.055
Identities = 8/36 (22%), Positives = 14/36 (38%), Gaps = 7/36 (19%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGS---ISLSART 53
L+G SG G++ + N L + + T
Sbjct: 24 LIGASGVGRSHI----KNALLSQNPEKFVYPVPYTT 55
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for
structural genomics of infec diseases, csgid, putative
guanylate kinase; HET: MSE; 2.05A {Listeria
monocytogenes}
Length = 208
Score = 31.7 bits (73), Expect = 0.063
Identities = 13/34 (38%), Positives = 15/34 (44%), Gaps = 5/34 (14%)
Query: 20 GLL----GPSGCGKTTLLSCIVNRLRLDHG-SIS 48
GLL GPSG GK T+ + SIS
Sbjct: 8 GLLIVLSGPSGVGKGTVREAVFKDPETSFDYSIS 41
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism,
structural genomics, structural genomics of pathogenic
protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium
vivax}
Length = 204
Score = 31.4 bits (72), Expect = 0.071
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 7/34 (20%)
Query: 23 GPSGCGKTTLLSCIVNRLRLDHGS---ISLSART 53
GPSG GK TL + ++ + S S+S T
Sbjct: 19 GPSGVGKGTL----IKKVLSEFPSRFRFSISCTT 48
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom
consortium, transferase; HET: EPE; 2.18A {Plasmodium
falciparum}
Length = 218
Score = 31.4 bits (72), Expect = 0.076
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 23 GPSGCGKTTLLSCIVNRLRLDHG-SIS 48
GPSG GK TL+ ++N S+S
Sbjct: 30 GPSGVGKGTLIKKLLNEFPNYFYFSVS 56
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292;
mixed alpha-beta protein, rossman fold, signaling
protein, transferase; 1.40A {Aquifex aeolicus} SCOP:
c.37.1.11
Length = 178
Score = 31.1 bits (70), Expect = 0.087
Identities = 22/118 (18%), Positives = 40/118 (33%), Gaps = 14/118 (11%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAEDSPSY 79
+ G G GKTTL+ IV RL VRD + G ++ +
Sbjct: 4 IITGEPGVGKTTLVKKIVERLGKRAI--GFWTEEVRDPETKKRTGFR----IITTEGKKK 57
Query: 80 LLEYYNCSTLEDVFLYLCEQDQILFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDE 137
+ ++ + V Y + F + ++ + K++I+DE
Sbjct: 58 IFSSKFFTSKKLVGSY--GVNVQYFEELAIPIL------ERAYREAKKDRRKVIIIDE 107
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase
like domain, protein binding; 1.31A {Homo sapiens}
SCOP: c.37.1.1
Length = 180
Score = 30.9 bits (71), Expect = 0.090
Identities = 9/36 (25%), Positives = 12/36 (33%), Gaps = 7/36 (19%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGS---ISLSART 53
LLG G G+ + N L H + T
Sbjct: 10 LLGAHGVGRRHI----KNTLITKHPDRFAYPIPHTT 41
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1,
nicotinic acid riboside kinase activity, NAD
biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB:
2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Length = 207
Score = 30.6 bits (69), Expect = 0.14
Identities = 10/31 (32%), Positives = 14/31 (45%), Gaps = 5/31 (16%)
Query: 10 NTVIFGVTAYGLLGPSGCGKTTLLSCIVNRL 40
T I G++ G + GKTTL + L
Sbjct: 20 KTFIIGIS-----GVTNSGKTTLAKNLQKHL 45
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization,
acetylation, ATP-binding, nucleotide-binding,
phosphoprotein, transferase; 1.80A {Saccharomyces
cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A
2zzy_A
Length = 186
Score = 30.5 bits (70), Expect = 0.14
Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 23 GPSGCGKTTLLSCIVNRLRLDHG-SIS 48
GPSG GK+TLL + G S+S
Sbjct: 8 GPSGTGKSTLLKKLFAEYPDSFGFSVS 34
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein,
ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus
radiodurans} PDB: 3gp8_A 3gpl_A*
Length = 574
Score = 30.8 bits (70), Expect = 0.15
Identities = 9/33 (27%), Positives = 13/33 (39%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSISLSART 53
L G G GK+T + + + L A T
Sbjct: 209 LTGGPGTGKSTTTKAVADLAESLGLEVGLCAPT 241
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic;
photosynthesis, rubisco activase, AAA+ protein; 2.95A
{Nicotiana tabacum} PDB: 3zw6_A
Length = 293
Score = 30.5 bits (69), Expect = 0.17
Identities = 12/61 (19%), Positives = 23/61 (37%), Gaps = 11/61 (18%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLR----------LDHGSISLSARTVRDIGYMPQVGLMRSG 69
G+ G G GK+ + ++ L+ G+ A+ +R Y ++R G
Sbjct: 40 GIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQR-YREAAEIIRKG 98
Query: 70 A 70
Sbjct: 99 N 99
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP,
replication; HET: ADP; 2.80A {Pyrococcus furiosus}
SCOP: a.80.1.1 c.37.1.20
Length = 327
Score = 30.4 bits (69), Expect = 0.18
Identities = 8/18 (44%), Positives = 9/18 (50%)
Query: 23 GPSGCGKTTLLSCIVNRL 40
GP G GKTT + L
Sbjct: 53 GPPGVGKTTAALALAREL 70
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP;
1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A*
2wwi_A*
Length = 212
Score = 29.9 bits (68), Expect = 0.22
Identities = 12/56 (21%), Positives = 23/56 (41%), Gaps = 4/56 (7%)
Query: 23 GPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAEDSPS 78
G GK+T +V L+ + ++ + + +G + S L E+S S
Sbjct: 17 GLDRSGKSTQSKLLVEYLK----NNNVEVKHLYFPNRETGIGQIISKYLKMENSMS 68
>2ged_A SR-beta, signal recognition particle receptor beta subunit;
protein transport, G protein, proline isomerization,
circular permutation; 2.20A {Saccharomyces cerevisiae}
Length = 193
Score = 30.1 bits (68), Expect = 0.22
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 21 LLGPSGCGKTTLLSCIVN 38
+ GP GKT+LL+ +
Sbjct: 53 IAGPQNSGKTSLLTLLTT 70
>1kht_A Adenylate kinase; phosphotransferase, signaling protein,
transferase; HET: AMP; 2.50A {Methanococcus voltae}
SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Length = 192
Score = 30.0 bits (67), Expect = 0.22
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSISL 49
+ G G G TT ++ LR + + +
Sbjct: 8 VTGVPGVGSTTSSQLAMDNLRKEGVNYKM 36
>1nrj_B SR-beta, signal recognition particle receptor beta subunit;
transmembrane, endoplasmic reticulum, GTP-binding; HET:
GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Length = 218
Score = 29.7 bits (67), Expect = 0.25
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 21 LLGPSGCGKTTLLSCIVN 38
+ GP GKT+LL+ +
Sbjct: 17 IAGPQNSGKTSLLTLLTT 34
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA
replication, clamp loader, AAA+ ATPase, ATP-binding,
nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus
fulgidus}
Length = 226
Score = 29.9 bits (68), Expect = 0.25
Identities = 7/18 (38%), Positives = 8/18 (44%)
Query: 23 GPSGCGKTTLLSCIVNRL 40
GP G GKT + L
Sbjct: 45 GPPGTGKTATAIALARDL 62
>3pvs_A Replication-associated recombination protein A; maintenance of
genome stability Pro recombination; 2.50A {Escherichia
coli}
Length = 447
Score = 29.8 bits (68), Expect = 0.26
Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 4/37 (10%)
Query: 23 GPSGCGKTTLLSCIVNRLRLDHGSISLSART--VRDI 57
GP G GKTTL I D +SA T V++I
Sbjct: 57 GPPGTGKTTLAEVIARYANADV--ERISAVTSGVKEI 91
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding,
hydrolase, nucleotide-binding; HET: GDP; 2.25A
{Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Length = 358
Score = 29.9 bits (68), Expect = 0.27
Identities = 8/29 (27%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 21 LLGPSGCGKTTLLSCIV-NRLRLDHGSIS 48
G SG GK++LL+ ++ + + +S
Sbjct: 220 FAGQSGVGKSSLLNALLGLQNEILTNDVS 248
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme
function initiative, EFI, STRU genomics, transferase;
1.60A {Janibacter SP}
Length = 200
Score = 29.7 bits (66), Expect = 0.30
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDH 44
++G SG GKTT+ + + L+
Sbjct: 34 VMGVSGSGKTTIAHGVADETGLEF 57
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA
replication, clamp loader, AAA+ ATP ATP-binding,
nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus
fulgidus} PDB: 2chv_A
Length = 319
Score = 29.6 bits (67), Expect = 0.30
Identities = 7/18 (38%), Positives = 8/18 (44%)
Query: 23 GPSGCGKTTLLSCIVNRL 40
GP G GKT + L
Sbjct: 45 GPPGTGKTATAIALARDL 62
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane,
transmembra membrane protein, signaling protein; 1.99A
{Mus musculus} PDB: 3ryt_A*
Length = 627
Score = 29.7 bits (66), Expect = 0.33
Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Query: 55 RDIGYMPQVGLMRSGALLAEDSPSYLLEYYNCSTLEDVFLYLCE-QDQILFSLVGSESAF 113
RDI M + A L E S + ++ S L +++ Y+ + + +IL SL A
Sbjct: 549 RDIAKMASISDQDMDAYLVEQSRLHANDFNVLSALSELYFYVTKYRQEILTSL--DRDAS 606
Query: 114 GGQQR 118
+ +
Sbjct: 607 CRKHK 611
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein
structure initiati YORK structural genomics research
consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Length = 202
Score = 29.3 bits (65), Expect = 0.35
Identities = 9/44 (20%), Positives = 16/44 (36%)
Query: 1 MADVSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDH 44
M+ S V + ++G SG GK+++ I
Sbjct: 3 MSIEYKSEAAAVRRFPGSIVVMGVSGSGKSSVGEAIAEACGYPF 46
>3llu_A RAS-related GTP-binding protein C; structural genomics
consortium, SGC, cytoplasm, nucleotide-binding,
nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens}
PDB: 2q3f_A*
Length = 196
Score = 29.2 bits (65), Expect = 0.35
Identities = 4/23 (17%), Positives = 13/23 (56%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLD 43
L+G GK+++ + +++ +
Sbjct: 25 LMGLRRSGKSSIQKVVFHKMSPN 47
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC
transporter ATPase domain-like; HET: DNA ADP; 2.70A
{Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Length = 371
Score = 29.4 bits (66), Expect = 0.36
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 7/37 (18%)
Query: 114 GGQQRRVSFAVSL-------IHDPKILILDEPTVGLD 143
GG+Q V+ ++ L + + +ILDEPTV LD
Sbjct: 283 GGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLD 319
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein
struct initiative, northeast structural genomics
consortium, NESG, function; 2.40A {Bacillus halodurans}
SCOP: c.37.1.25
Length = 189
Score = 29.1 bits (65), Expect = 0.38
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDH 44
+ GP+G GK+T + +L
Sbjct: 7 ITGPAGVGKSTTCKRLAAQLDNSA 30
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A
{Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A
1ko5_A* 1ko8_A* 1kof_A*
Length = 175
Score = 29.2 bits (65), Expect = 0.39
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDH 44
L+G SG GK+ + S + ++L
Sbjct: 13 LMGVSGSGKSAVASEVAHQLHAAF 36
>2fh5_B SR-beta, signal recognition particle receptor beta subunit;
endomembrane targeting, GTPase, GAP, longin domain,
SEDL, transport protein; HET: GTP; 2.45A {Mus musculus}
SCOP: c.37.1.8 PDB: 2go5_2
Length = 214
Score = 28.9 bits (65), Expect = 0.43
Identities = 5/14 (35%), Positives = 6/14 (42%)
Query: 21 LLGPSGCGKTTLLS 34
+G GKT L
Sbjct: 12 FVGLCDSGKTLLFV 25
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 516
Score = 29.5 bits (66), Expect = 0.46
Identities = 10/23 (43%), Positives = 11/23 (47%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLD 43
L GP G GKTT + L D
Sbjct: 82 LYGPPGIGKTTAAHLVAQELGYD 104
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane,
transmembrane receptor, cell membrane, glycoprotein,
phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D*
3su8_X*
Length = 644
Score = 29.3 bits (65), Expect = 0.49
Identities = 14/65 (21%), Positives = 27/65 (41%), Gaps = 3/65 (4%)
Query: 55 RDIGYMPQVGLMRSGALLAEDSPSYLLEYYNCSTLEDVFLYLCE-QDQILFSLVGSESAF 113
DI ++LAE S +Y + L +++ Y+ + DQI+ +L E
Sbjct: 563 ADIRQTVPASDQEMNSVLAELSWNYSGDLGARVALHELYKYINKYYDQIITAL--EEDGT 620
Query: 114 GGQQR 118
+ +
Sbjct: 621 AQKMQ 625
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta
protein., structural genomics, PSI-2, protein structure
initiative; HET: G3D; 2.20A {Bacillus subtilis} PDB:
2axp_A*
Length = 173
Score = 28.9 bits (65), Expect = 0.49
Identities = 6/12 (50%), Positives = 8/12 (66%)
Query: 21 LLGPSGCGKTTL 32
L GP C K+T+
Sbjct: 6 LEGPDCCFKSTV 17
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain
cytoplasmic; motor protein, AAA+ protein, ASCE protein,
P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma
japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Length = 2695
Score = 29.4 bits (66), Expect = 0.51
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 21 LLGPSGCGKTTLL-SCIVNRLRLDHGSISLSART 53
L GP G GKT ++ + + N D I+ S T
Sbjct: 1272 LCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDT 1305
Score = 28.3 bits (63), Expect = 1.1
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 21 LLGPSGCGKTTLLSC 35
L+G +GCGKT
Sbjct: 928 LVGKAGCGKTATWKT 942
>2qag_C Septin-7; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 418
Score = 29.0 bits (64), Expect = 0.63
Identities = 18/88 (20%), Positives = 35/88 (39%), Gaps = 5/88 (5%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGA----LLAEDS 76
++G SG GK+TL++ + S R + + L++ G L D+
Sbjct: 36 VVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDT 95
Query: 77 PSYLLEYYNCSTLEDVFLYLCEQ-DQIL 103
P + N + + V Y+ + + L
Sbjct: 96 PGFGDAVDNSNCWQPVIDYIDSKFEDYL 123
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Length = 347
Score = 28.8 bits (65), Expect = 0.65
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISL---SARTVRD-IGYMPQVGLMRS 68
G+ SG GK+TLL I N D ++L R V + + +PQ L +
Sbjct: 75 GIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLPQSTLSKC 127
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3;
winged-helix domain, helix-turn-helix, AAA+ ATPase
domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A
{Sulfolobus solfataricus}
Length = 384
Score = 29.0 bits (64), Expect = 0.65
Identities = 19/135 (14%), Positives = 32/135 (23%), Gaps = 29/135 (21%)
Query: 6 ASSLNTVIFGVTAYGLL--GPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQV 63
A ++ + + L G +G GKT + I N +
Sbjct: 33 AIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEI----------------------- 69
Query: 64 GLMRSGALLAEDSPSYLLEYYNCSTLEDV-FLYLCEQDQILFSLVGSESAFGGQQRRVSF 122
E+ Y NC + L L + +
Sbjct: 70 ---EEVKKEDEEYKDVKQAYVNCREVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKI 126
Query: 123 AVSLIHDPKILILDE 137
+ I+ LDE
Sbjct: 127 KNGTRNIRAIIYLDE 141
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1;
winged-helix domain, helix-turn-helix, AAA+ ATPase
domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A
{Sulfolobus solfataricus}
Length = 386
Score = 28.9 bits (64), Expect = 0.68
Identities = 6/26 (23%), Positives = 14/26 (53%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGS 46
+ G +G GKT ++ ++++L
Sbjct: 50 IYGLTGTGKTAVVKFVLSKLHKKFLG 75
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding,
chromatin regulator, growth regulation, hydrolase,
nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo
sapiens} PDB: 2xsz_A*
Length = 456
Score = 28.8 bits (64), Expect = 0.68
Identities = 11/34 (32%), Positives = 12/34 (35%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV 54
L GP G GKT L I L + V
Sbjct: 68 LAGPPGTGKTALALAIAQELGSKVPFCPMVGSEV 101
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein;
HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Length = 274
Score = 28.6 bits (63), Expect = 0.71
Identities = 16/81 (19%), Positives = 31/81 (38%), Gaps = 4/81 (4%)
Query: 23 GPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAE----DSPS 78
G SG GK+TL++ + S R + + L++ G + D+P
Sbjct: 15 GESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPG 74
Query: 79 YLLEYYNCSTLEDVFLYLCEQ 99
+ N + + V Y+ +
Sbjct: 75 FGDAVDNSNCWQPVIDYIDSK 95
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P,
MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 307
Score = 28.8 bits (64), Expect = 0.73
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLD 43
L+G SG GK+++ S I +
Sbjct: 8 LMGRSGSGKSSMRSIIFSNYSAF 30
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 28.7 bits (64), Expect = 0.81
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 21 LLGPSGCGKT-TLLSCIVNRLRLDHGSISLSART 53
L GP G GKT TL S + + S++ S+ T
Sbjct: 1309 LCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSAT 1342
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase,
antibiotic resistance, phosphorylation, mononucleoti
binding fold; HET: ATP; 2.50A {Streptomyces venezuelae}
SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A*
1qhy_A*
Length = 178
Score = 28.2 bits (62), Expect = 0.83
Identities = 9/64 (14%), Positives = 23/64 (35%), Gaps = 3/64 (4%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAEDSPSYL 80
L G S GK+ ++ C+ + L ++ ++ + ++ G D +
Sbjct: 8 LNGGSSAGKSGIVRCLQS--VLPEPWLAFGVDSLIEAM-PLKMQSAEGGIEFDADGGVSI 64
Query: 81 LEYY 84
+
Sbjct: 65 GPEF 68
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease,
LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation,
GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo
sapiens} PDB: 3d6t_B*
Length = 184
Score = 28.1 bits (63), Expect = 0.90
Identities = 11/38 (28%), Positives = 16/38 (42%), Gaps = 6/38 (15%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIG 58
++G +G GKTTLL +L S +G
Sbjct: 7 IVGNTGSGKTTLL------QQLMKTKKSDLGMQSATVG 38
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A
{Sulfolobus acidocaldarius} SCOP: c.37.1.1
Length = 194
Score = 28.2 bits (62), Expect = 0.93
Identities = 7/29 (24%), Positives = 14/29 (48%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSISL 49
+ G G GK+T+L+ + L + +
Sbjct: 6 VTGIPGVGKSTVLAKVKEILDNQGINNKI 34
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Length = 302
Score = 27.9 bits (63), Expect = 1.1
Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSIS 48
L GPSG GK+++LS + L +S
Sbjct: 170 LAGPSGVGKSSILSRLTG-EELRTQEVS 196
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase
activation, cytochrome C, procaspase-9, A nucleotide,
cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A*
3iyt_A* 3iza_A*
Length = 1249
Score = 28.3 bits (63), Expect = 1.1
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRL 42
+ G +GCGK+ L + V L
Sbjct: 151 TIYGMAGCGKSVLAAEAVRDHSL 173
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function;
HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Length = 359
Score = 28.1 bits (62), Expect = 1.1
Identities = 14/75 (18%), Positives = 28/75 (37%), Gaps = 15/75 (20%)
Query: 20 GLLGPSGCGKTTLLSCIVNRL---RLDHGSISLSARTVRDIGY-----------MPQVGL 65
++ G ++ + N + +L SI+++ D G+ PQ
Sbjct: 123 AVVARGGTANAIRIAAVDNPVNVNKLAQDSINIAQIVPMD-GFHLSRRCLDLFKDPQTAH 181
Query: 66 MRSGALLAEDSPSYL 80
R G+ DS ++L
Sbjct: 182 KRRGSPSTFDSNNFL 196
Score = 26.2 bits (57), Expect = 5.8
Identities = 10/49 (20%), Positives = 20/49 (40%), Gaps = 2/49 (4%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDI--GYMPQVGLMR 67
L+G G GK+T+ + + + + V ++ P V L+
Sbjct: 29 LVGSPGSGKSTIAEELCQIINEKYHTFLSEHPNVIEVNDRLKPMVNLVD 77
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+
molecular machine, hexamer, asymmetric,, ATP-BIN
chaperone, metal-binding; HET: ADP; 3.25A {Escherichia
coli} PDB: 3hte_A
Length = 363
Score = 27.9 bits (63), Expect = 1.1
Identities = 8/12 (66%), Positives = 10/12 (83%)
Query: 21 LLGPSGCGKTTL 32
L+GP+G GKT L
Sbjct: 56 LIGPTGSGKTLL 67
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding
loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori}
SCOP: c.37.1.20
Length = 376
Score = 28.0 bits (63), Expect = 1.1
Identities = 7/12 (58%), Positives = 10/12 (83%)
Query: 21 LLGPSGCGKTTL 32
L+GP+G GKT +
Sbjct: 77 LIGPTGSGKTLM 88
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein;
HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A*
1e32_A* 1s3s_A* 2pjh_B
Length = 489
Score = 28.2 bits (63), Expect = 1.1
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 21 LLGPSGCGKTTLLSCIVNRL 40
L GP G GKT + + N
Sbjct: 243 LYGPPGTGKTLIARAVANET 262
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial
GTPase, bacterial POL motility, POLE localisation,
alpha/beta protein; HET: GDP; 1.90A {Thermus
thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Length = 198
Score = 27.8 bits (62), Expect = 1.2
Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
Query: 22 LGPSGCGKTTLLSCIVNRLRLDHGS--ISLSARTVRDIG 58
GP GKTT L I +++ +SL+ R +
Sbjct: 20 YGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLF 58
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann,
hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Length = 189
Score = 27.8 bits (61), Expect = 1.2
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 23 GPSGCGKTTLLSCIVNRLRLDHGSIS 48
GP G GKTTL+ L+ +
Sbjct: 8 GPPGVGKTTLIHKASEVLKSSGVPVD 33
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P;
hydrolase, type IV secretion, conjugation; 2.35A
{Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Length = 392
Score = 28.0 bits (62), Expect = 1.2
Identities = 5/27 (18%), Positives = 11/27 (40%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSI 47
+L G GK+ ++ R + +
Sbjct: 40 ILAKPGAGKSFTAKMLLLREYMQGSRV 66
>2eyu_A Twitching motility protein PILT; pilus retraction motor,
C-terminal domain PILT, protein transport; 1.87A
{Aquifex aeolicus}
Length = 261
Score = 27.6 bits (62), Expect = 1.4
Identities = 8/25 (32%), Positives = 16/25 (64%), Gaps = 3/25 (12%)
Query: 23 GPSGCGKTTLLSCIV---NRLRLDH 44
GP+G GK+T ++ ++ N+ + H
Sbjct: 32 GPTGSGKSTTIASMIDYINQTKSYH 56
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure
initiative, PSI, SGPP structural genomics of pathogenic
protozoa consortium; HET: ADP; 1.70A {Leishmania major}
SCOP: c.37.1.1
Length = 184
Score = 27.4 bits (60), Expect = 1.4
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 21 LLGPSGCGKTTLLSCIVNRL 40
+ G G GKT++ I L
Sbjct: 15 ITGTPGTGKTSMAEMIAAEL 34
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside
modification, isopentenyl-tRNA transferase,
transferase-RNA complex; 2.50A {Escherichia coli k-12}
PDB: 2zxu_A* 2zm5_A
Length = 316
Score = 27.5 bits (62), Expect = 1.5
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 6/32 (18%)
Query: 1 MADVSASSLNTVIFGVTAYGLLGPSGCGKTTL 32
M+D+S +SL IF L+GP+ GKT L
Sbjct: 1 MSDISKASLPKAIF------LMGPTASGKTAL 26
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate
hydrolases fold, S genomics, joint center for
structural genomics, JCSG; HET: MSE; 1.70A
{Chloroflexus aurantiacus}
Length = 193
Score = 27.2 bits (60), Expect = 1.6
Identities = 9/22 (40%), Positives = 10/22 (45%)
Query: 23 GPSGCGKTTLLSCIVNRLRLDH 44
G GKTTL + LRL
Sbjct: 12 GHPATGKTTLSQALATGLRLPL 33
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase,
hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex
aeolicus} PDB: 2eww_A* 2gsz_A*
Length = 372
Score = 27.6 bits (62), Expect = 1.6
Identities = 8/25 (32%), Positives = 16/25 (64%), Gaps = 3/25 (12%)
Query: 23 GPSGCGKTTLLSCIV---NRLRLDH 44
GP+G GK+T ++ ++ N+ + H
Sbjct: 143 GPTGSGKSTTIASMIDYINQTKSYH 167
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial
conjugation, F1-ATPase-like quaternary structure, ring
helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB:
1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Length = 437
Score = 27.6 bits (61), Expect = 1.6
Identities = 7/27 (25%), Positives = 12/27 (44%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSI 47
+ G +G GK+ LL + L +
Sbjct: 58 VNGATGTGKSVLLRELAYTGLLRGDRM 84
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC,
mitosis, GDP, C cycle, cell division, GTP-binding,
nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB:
2qa5_A* 3ftq_A*
Length = 301
Score = 27.5 bits (60), Expect = 1.7
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDH 44
++G SG GK+TL++ +
Sbjct: 23 VVGESGLGKSTLINSLFLTDLYPE 46
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion
ATPase, ATP-binding, FIMB nucleotide-binding, transport;
HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB:
3jvu_A*
Length = 356
Score = 27.5 bits (62), Expect = 1.8
Identities = 9/25 (36%), Positives = 15/25 (60%), Gaps = 3/25 (12%)
Query: 23 GPSGCGKTTLLSCIV---NRLRLDH 44
GP+G GK+T L+ ++ N + H
Sbjct: 130 GPTGSGKSTTLAAMLDYLNNTKYHH 154
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P,
MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 331
Score = 27.3 bits (60), Expect = 2.1
Identities = 5/20 (25%), Positives = 12/20 (60%)
Query: 21 LLGPSGCGKTTLLSCIVNRL 40
L+G CGK+++ + + +
Sbjct: 4 LMGVRRCGKSSICKVVFHNM 23
>1u09_A Polyprotein; protein-DNA complex, RNA-dependent RNA polymerase,
foot and disease virus, transferase; 1.91A
{Foot-and-mouth disease virus} SCOP: e.8.1.4 PDB: 1wne_A
2e9r_X* 2e9t_A* 2e9z_A* 2ec0_A 3kmq_A 3kms_A 3koa_A
3kna_A 3klv_A 3nky_A 3nma_A 2f8e_X* 2d7s_A* 3nl0_A
Length = 476
Score = 27.5 bits (60), Expect = 2.1
Identities = 14/95 (14%), Positives = 30/95 (31%), Gaps = 2/95 (2%)
Query: 12 VIFGVTAYGLLG--PSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSG 69
+ + G PSGC T++++ I+N + + + D M G
Sbjct: 283 HAYENKRITVEGGMPSGCSATSIINTILNNIYVLYALRRHYEGVELDTYTMISYGDDIVV 342
Query: 70 ALLAEDSPSYLLEYYNCSTLEDVFLYLCEQDQILF 104
A + L ++ ++ +L
Sbjct: 343 ASDYDLDFEALKPHFKSLGQTITPADKSDKGFVLG 377
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase;
HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A*
2jas_A*
Length = 205
Score = 26.9 bits (59), Expect = 2.2
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 23 GPSGCGKTTLLSCIVNRLRLDH 44
G G GK+T+ + I +L +
Sbjct: 7 GTVGAGKSTISAEISKKLGYEI 28
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP,
transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP:
c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A*
1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A*
1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A*
1e9f_A*
Length = 215
Score = 27.2 bits (61), Expect = 2.2
Identities = 11/56 (19%), Positives = 19/56 (33%), Gaps = 4/56 (7%)
Query: 23 GPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAEDSPS 78
G GK+T +V L + A +R ++G + S L +
Sbjct: 16 GVDRAGKSTQSRKLVEALC----AAGHRAELLRFPERSTEIGKLLSSYLQKKSDVE 67
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA
replication initation factor, cell cycle control
factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP:
a.4.5.11 c.37.1.20
Length = 389
Score = 27.5 bits (60), Expect = 2.2
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 21 LLGPSGCGKTTLLSCIVNRLR 41
LLG G GKT L + +
Sbjct: 49 LLGRPGTGKTVTLRKLWELYK 69
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW,
emerald biostructures, ehrlich chaffeensis; 2.15A
{Ehrlichia chaffeensis}
Length = 223
Score = 26.8 bits (60), Expect = 2.3
Identities = 8/26 (30%), Positives = 11/26 (42%)
Query: 23 GPSGCGKTTLLSCIVNRLRLDHGSIS 48
G G GKTT + L +G +
Sbjct: 28 GIDGSGKTTQSHLLAEYLSEIYGVNN 53
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC
F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1
b.49.1.1 c.37.1.11
Length = 473
Score = 27.3 bits (61), Expect = 2.3
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISLSA 51
GL G +G GKT L+ +++ + +HG IS+ A
Sbjct: 155 GLFGGAGVGKTVLIQELIHNIAQEHGGISVFA 186
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis,
ATP-binding, nucleotide-binding, poxvirus, transferase;
HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB:
2w0s_A*
Length = 204
Score = 26.9 bits (60), Expect = 2.3
Identities = 9/56 (16%), Positives = 18/56 (32%), Gaps = 6/56 (10%)
Query: 23 GPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAEDSPS 78
G GKTT I+ + + + + + G M L + + +
Sbjct: 11 GLDKSGKTTQCMNIMESIP------ANTIKYLNFPQRSTVTGKMIDDYLTRKKTYN 60
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC,
coiled coil, GTP- binding, nucleotide-binding, immune
system; HET: GDP; 2.15A {Homo sapiens}
Length = 239
Score = 26.9 bits (59), Expect = 2.3
Identities = 9/44 (20%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVG 64
L+G +G GK+ + I+ R G+ + + T +
Sbjct: 34 LVGKTGAGKSATGNSILGRKVFHSGT-AAKSITKKCEKRSSSWK 76
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural
genomics, PSI, protein struc initiative; 3.20A
{Agrobacterium tumefaciens str} SCOP: c.37.1.25
Length = 191
Score = 27.0 bits (59), Expect = 2.5
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRL 42
L G G GK+T+ + N +
Sbjct: 14 LSGHPGSGKSTIAEALANLPGV 35
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR;
HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10
PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Length = 262
Score = 27.0 bits (59), Expect = 2.5
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 22 LGPSGCGKTTLLSCIVNRLRLDH 44
+G +G GKTTL L ++
Sbjct: 20 VGTAGSGKTTLTGEFGRYLEDNY 42
>2ijd_1 Picornain 3C, RNA-directed RNA polymerase; RNA-dependent RNA
polymerase, picornavirus, protease, hydrolase,
transferase; 3.40A {Human poliovirus 1} SCOP: b.47.1.4
e.8.1.4
Length = 644
Score = 27.1 bits (59), Expect = 2.6
Identities = 7/26 (26%), Positives = 14/26 (53%)
Query: 24 PSGCGKTTLLSCIVNRLRLDHGSISL 49
PSGC T++ + ++N L + +
Sbjct: 470 PSGCSGTSIFNSMINNLIIRTLLLKT 495
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle
structural genomics center for infectious transferase;
1.90A {Burkholderia thailandensis}
Length = 227
Score = 26.8 bits (60), Expect = 2.7
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 23 GPSGCGKTTLLSCIVNRLR 41
G G GKTT L +RL+
Sbjct: 32 GIDGAGKTTHLQWFCDRLQ 50
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta
structure, hydrolase; HET: ADP; 2.40A {Salmonella
typhimurium}
Length = 438
Score = 26.9 bits (60), Expect = 2.8
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 20 GLLGPSGCGKTTLLSCIV 37
GL SG GK+ LL +
Sbjct: 161 GLFAGSGVGKSVLLGMMA 178
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus
P2}
Length = 235
Score = 26.9 bits (60), Expect = 2.9
Identities = 6/13 (46%), Positives = 6/13 (46%)
Query: 21 LLGPSGCGKTTLL 33
L G G GKT
Sbjct: 28 LTGEPGTGKTIFS 40
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 354
Score = 26.8 bits (59), Expect = 3.0
Identities = 6/18 (33%), Positives = 10/18 (55%)
Query: 23 GPSGCGKTTLLSCIVNRL 40
GP+G GK T ++ +
Sbjct: 43 GPNGTGKKTRCMALLESI 60
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD,
CDC48, ATP-binding, lipid-binding, nucle binding,
nucleus, phosphoprotein, transport; HET: ADP; 3.00A
{Mus musculus}
Length = 301
Score = 26.8 bits (60), Expect = 3.1
Identities = 13/22 (59%), Positives = 15/22 (68%), Gaps = 3/22 (13%)
Query: 14 FGVTA-YGLL--GPSGCGKTTL 32
FG+T G+L GP GCGKT L
Sbjct: 44 FGMTPSKGVLFYGPPGCGKTLL 65
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP;
2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB:
3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A*
3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Length = 525
Score = 26.8 bits (59), Expect = 3.1
Identities = 16/128 (12%), Positives = 38/128 (29%), Gaps = 28/128 (21%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHG------SISLSARTVR--------DIGYMPQVGLM 66
+ G SG GKT + ++ + + + + D+ + G +
Sbjct: 44 VSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEGKL 103
Query: 67 RSGALLAEDSPSYLLEYYNCSTLEDVFLYLCEQD----------QILFSLVGSESAFGGQ 116
+ ++ ++ S L + Y ++ +F + S
Sbjct: 104 FILDASPDPEGQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQYDASS----V 159
Query: 117 QRRVSFAV 124
RR F +
Sbjct: 160 VRRELFRL 167
Score = 26.0 bits (57), Expect = 5.7
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 17 TAYGLLGPSGCGKTTLLS 34
+ G +G GKT L+S
Sbjct: 282 SIILATGATGTGKTLLVS 299
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in
diseases, center for structural genomics of infectious
DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio
cholerae o1 biovar eltor} PDB: 3n2i_A*
Length = 236
Score = 26.5 bits (59), Expect = 3.2
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 23 GPSGCGKTTLLSCIVNRLR 41
G G GK+T + +V L+
Sbjct: 34 GLEGAGKSTAIQVVVETLQ 52
>3n6m_A RNA-dependent RNA polymerase; EV71, RDRP, GTP, transferase; HET:
GTP; 2.50A {Human enterovirus 71} PDB: 3n6l_A* 3n6n_A*
Length = 462
Score = 26.6 bits (58), Expect = 3.3
Identities = 10/41 (24%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 11 TVIFGVTAYGLLG--PSGCGKTTLLSCIVNRLRLDHGSISL 49
++ Y +LG PSGC T++ + ++N + + I
Sbjct: 273 HHVYRNKTYCVLGGMPSGCSGTSIFNSMINNIIIRALLIKT 313
>1xr7_A Genome polyprotein; RNA-dependent RNA polymerase, transferase;
2.30A {Human rhinovirus 16} SCOP: e.8.1.4 PDB: 1tp7_A*
1xr6_A
Length = 460
Score = 26.7 bits (58), Expect = 3.4
Identities = 11/41 (26%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 11 TVIFGVTAYGLLG--PSGCGKTTLLSCIVNRLRLDHGSISL 49
IF T Y + G PSGC T++ + ++N + + +
Sbjct: 271 KHIFKSTYYEVEGGVPSGCSGTSIFNSMINNIIIRTLVLDA 311
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region,
conformational changes, transferase; 2.10A {Homo
sapiens} SCOP: c.37.1.1
Length = 196
Score = 26.3 bits (59), Expect = 3.5
Identities = 14/42 (33%), Positives = 18/42 (42%), Gaps = 10/42 (23%)
Query: 10 NTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSA 51
V+F +LG G GK T + IV + H LSA
Sbjct: 3 PLVVF------VLGGPGAGKGTQCARIVEKYGYTH----LSA 34
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein
transport, biosynthetic protein; HET: GNP; 3.00A
{Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Length = 296
Score = 26.6 bits (59), Expect = 3.6
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHG 45
L G +G GKTT L+ + L+
Sbjct: 110 LFGSTGAGKTTTLAKLAAISMLEKH 134
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding,
ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE
PG4; 1.60A {Sulfolobus tokodaii}
Length = 213
Score = 26.5 bits (59), Expect = 3.7
Identities = 5/42 (11%), Positives = 14/42 (33%), Gaps = 7/42 (16%)
Query: 23 GPSGCGKTTLLSCIVNRLRLDHGSI-------SLSARTVRDI 57
G G GK++ + + + + L +++
Sbjct: 11 GIDGSGKSSQATLLKDWIELKRDVYLTEWNSSDWIHDIIKEA 52
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop,
transferase; HET: ADP; 2.33A {Enterobacteria phage T4}
SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A*
2ia5_A
Length = 301
Score = 26.6 bits (58), Expect = 3.9
Identities = 5/12 (41%), Positives = 7/12 (58%)
Query: 21 LLGPSGCGKTTL 32
+G G GK+T
Sbjct: 7 TIGCPGSGKSTW 18
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability,
potential tentoxin binding hydrolase; 3.20A {Spinacia
oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Length = 498
Score = 26.5 bits (59), Expect = 3.9
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISLSA 51
GL G +G GKT L+ ++N + HG +S+
Sbjct: 169 GLFGGAGVGKTVLIMELINNIAKAHGGVSVFG 200
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion,
hydrolas binding complex; 2.40A {Helicobacter pylori}
SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Length = 330
Score = 26.6 bits (59), Expect = 3.9
Identities = 9/30 (30%), Positives = 13/30 (43%), Gaps = 8/30 (26%)
Query: 9 LNTVIFGVTAYGLLGPSGCGKTTLLSCIVN 38
N ++ G T G GKTT + I+
Sbjct: 172 KNVIVCGGT--------GSGKTTYIKSIME 193
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation,
cytoplasm, HOST- virus interaction, nucleotide-binding,
nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens}
PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A*
1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C*
3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C*
...
Length = 221
Score = 26.1 bits (58), Expect = 3.9
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 21 LLGPSGCGKTTLLS 34
L+G G GKTT +
Sbjct: 20 LVGDGGTGKTTFVK 33
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A
{Brucella suis}
Length = 361
Score = 26.5 bits (59), Expect = 4.0
Identities = 9/30 (30%), Positives = 13/30 (43%), Gaps = 8/30 (26%)
Query: 9 LNTVIFGVTAYGLLGPSGCGKTTLLSCIVN 38
V+ G T G GKTTL+ ++
Sbjct: 176 RVIVVAGET--------GSGKTTLMKALMQ 197
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication;
1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB:
1f2u_A* 1us8_A*
Length = 149
Score = 26.2 bits (58), Expect = 4.0
Identities = 10/30 (33%), Positives = 18/30 (60%), Gaps = 5/30 (16%)
Query: 10 NTVI---FGVTAYGLLGPSGCGKTTLLSCI 36
+TV+ G+ ++G +G GK++LL I
Sbjct: 16 DTVVEFKEGINL--IIGQNGSGKSSLLDAI 43
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase,
transferase; HET: T5A; 1.98A {Escherichia coli} SCOP:
c.37.1.1 PDB: 5tmp_A*
Length = 213
Score = 26.4 bits (59), Expect = 4.0
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 23 GPSGCGKTTLLSCIVNRLR 41
G G GKTT + +V L
Sbjct: 10 GLEGAGKTTARNVVVETLE 28
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 26.6 bits (58), Expect = 4.1
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 23 GPSGCGKTTLLSCIVNRLRLDHGS 46
G +G GK+TL+ + N +
Sbjct: 49 GETGLGKSTLMDTLFNTKFEGEPA 72
>1xr5_A Genome polyprotein; RNA-dependent RNA polymerase, transferase;
2.80A {Human rhinovirus 14} SCOP: e.8.1.4
Length = 466
Score = 26.6 bits (58), Expect = 4.2
Identities = 6/19 (31%), Positives = 13/19 (68%)
Query: 24 PSGCGKTTLLSCIVNRLRL 42
PSGC T++ + ++N + +
Sbjct: 286 PSGCSGTSIFNSMINNIII 304
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM:
PF02562, ST genomics, PSI-2, protein structure
initiative; 2.35A {Corynebacterium glutamicum atcc
13032}
Length = 208
Score = 26.0 bits (58), Expect = 4.2
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 6/29 (20%)
Query: 4 VSASSLNTVIFGVTAYGLLGPSGCGKTTL 32
V A NT++FG+ GP+G GKT L
Sbjct: 16 VDAIDTNTIVFGL------GPAGSGKTYL 38
>4edh_A DTMP kinase, thymidylate kinase; structural genomics,
PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas
aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 3uwk_A* 3uwo_A*
3uxm_A*
Length = 213
Score = 26.0 bits (58), Expect = 4.2
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 23 GPSGCGKTTLLSCIVNRLR 41
GP G GK+T + RLR
Sbjct: 13 GPEGAGKSTNRDYLAERLR 31
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR
complex, HMR, HML, TELO AAA+ domain, structural,
nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Length = 318
Score = 26.4 bits (57), Expect = 4.5
Identities = 8/118 (6%), Positives = 29/118 (24%), Gaps = 28/118 (23%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAEDSPSYL 80
+ K L++ +++ L ++ P +
Sbjct: 50 ITNADDSTKFQLVNDVMDELITSSAR---------------------------KELPIFD 82
Query: 81 LEYYNCSTLEDVF-LYLCEQDQILFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDE 137
+ + L + LY I + + + ++ ++++
Sbjct: 83 YIHIDALELAGMDALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQN 140
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA
repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A
{Geobacillus}
Length = 670
Score = 26.3 bits (59), Expect = 4.5
Identities = 8/9 (88%), Positives = 8/9 (88%)
Query: 134 ILDEPTVGL 142
ILDEPT GL
Sbjct: 569 ILDEPTTGL 577
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA
repair, ABC ATPase, at cassette, DNA damage, DNA
excision; HET: ADP; 3.20A {Geobacillus
stearothermophilus} PDB: 3uwx_A
Length = 972
Score = 26.3 bits (59), Expect = 4.6
Identities = 8/9 (88%), Positives = 8/9 (88%)
Query: 134 ILDEPTVGL 142
ILDEPT GL
Sbjct: 871 ILDEPTTGL 879
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair;
3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Length = 993
Score = 26.3 bits (59), Expect = 4.7
Identities = 8/9 (88%), Positives = 8/9 (88%)
Query: 134 ILDEPTVGL 142
ILDEPT GL
Sbjct: 889 ILDEPTTGL 897
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide
biosynthesis, nucleotide-binding, transferase,
structural genomics, NPPSFA; HET: ADP TYD; 2.10A
{Thermotoga maritima} PDB: 3hjn_A*
Length = 197
Score = 26.0 bits (58), Expect = 4.7
Identities = 6/19 (31%), Positives = 9/19 (47%)
Query: 23 GPSGCGKTTLLSCIVNRLR 41
G G GK+T + + L
Sbjct: 7 GIDGSGKSTQIQLLAQYLE 25
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural
genomics consortium, ATP- hydrolase, magnesium,
metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo
sapiens}
Length = 357
Score = 26.3 bits (58), Expect = 4.8
Identities = 9/16 (56%), Positives = 10/16 (62%)
Query: 21 LLGPSGCGKTTLLSCI 36
L GP G GKT + CI
Sbjct: 122 LFGPPGTGKTLIGKCI 137
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo
sapiens}
Length = 389
Score = 26.3 bits (58), Expect = 4.8
Identities = 8/16 (50%), Positives = 9/16 (56%)
Query: 21 LLGPSGCGKTTLLSCI 36
L GP G GKT L +
Sbjct: 153 LFGPPGNGKTMLAKAV 168
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG,
MTBI, transferase; HET: ATM; 1.85A {Staphylococcus
aureus subsp} PDB: 4dwj_A* 4f4i_A
Length = 229
Score = 26.1 bits (58), Expect = 4.8
Identities = 9/19 (47%), Positives = 14/19 (73%)
Query: 23 GPSGCGKTTLLSCIVNRLR 41
GP G GKTT+++ + +RL
Sbjct: 33 GPEGSGKTTVINEVYHRLV 51
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP;
1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB:
1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D*
1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D*
2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Length = 482
Score = 26.1 bits (58), Expect = 4.9
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 4/38 (10%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISLSA----RT 53
GL G +G GKT L+ ++N + HG S+ A RT
Sbjct: 157 GLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERT 194
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP:
a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Length = 549
Score = 26.1 bits (57), Expect = 5.0
Identities = 6/22 (27%), Positives = 12/22 (54%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLR 41
L G +G GK+ + S +++
Sbjct: 156 FLHGRAGSGKSVIASQALSKSD 177
>2ccj_A DTMP kinase, thymidylate kinase; transferase, nucleotide
biosynthesis, TMP-binding, ATP-binding; HET: TMP; 1.7A
{Staphylococcus aureus} PDB: 2cck_A 2ccg_A*
Length = 205
Score = 26.0 bits (58), Expect = 5.0
Identities = 9/19 (47%), Positives = 14/19 (73%)
Query: 23 GPSGCGKTTLLSCIVNRLR 41
GP G GKTT+++ + +RL
Sbjct: 9 GPEGSGKTTVINEVYHRLV 27
>2vli_A Antibiotic resistance protein; transferase, tunicamycin,
phosphotransferase; 1.95A {Deinococcus radiodurans}
Length = 183
Score = 26.1 bits (57), Expect = 5.0
Identities = 8/18 (44%), Positives = 9/18 (50%)
Query: 23 GPSGCGKTTLLSCIVNRL 40
GP G GKT + RL
Sbjct: 12 GPFGVGKTHTAHTLHERL 29
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis,
phosphoprotein, feedback inhibition,
deoxyribonucleoside kinase, salvage pathway; HET: DCP;
2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB:
1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A*
2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Length = 230
Score = 26.2 bits (57), Expect = 5.0
Identities = 7/18 (38%), Positives = 8/18 (44%)
Query: 23 GPSGCGKTTLLSCIVNRL 40
G G GKTT L+
Sbjct: 27 GNIGSGKTTYLNHFEKYK 44
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer,
structural genomics; HET: ADP; 2.00A {Pyrococcus
horikoshii}
Length = 247
Score = 25.8 bits (57), Expect = 5.1
Identities = 6/13 (46%), Positives = 6/13 (46%)
Query: 21 LLGPSGCGKTTLL 33
L G G GKT
Sbjct: 28 LSGGPGTGKTIFS 40
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase,
hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB:
2oaq_1
Length = 511
Score = 26.3 bits (58), Expect = 5.2
Identities = 8/28 (28%), Positives = 12/28 (42%), Gaps = 8/28 (28%)
Query: 9 LNTVIFGVTAYGLLGPSGCGKTTLLSCI 36
+ ++ G T GKTT L+ I
Sbjct: 261 FSAIVVGET--------ASGKTTTLNAI 280
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide
biosynthesis, TMP-binding, A binding, structural
genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Length = 195
Score = 25.9 bits (58), Expect = 5.3
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 23 GPSGCGKTTLLSCIVNRLR 41
G G GKTT + L+
Sbjct: 7 GIDGSGKTTQAKKLYEYLK 25
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain,
ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus}
SCOP: c.37.1.20 PDB: 1nsf_A*
Length = 272
Score = 25.9 bits (57), Expect = 5.3
Identities = 7/12 (58%), Positives = 7/12 (58%)
Query: 21 LLGPSGCGKTTL 32
L GP GKT L
Sbjct: 69 LEGPPHSGKTAL 80
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase,
hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia
coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Length = 1180
Score = 26.4 bits (58), Expect = 5.3
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 26 GCGKTTLLSCIVNRLRLDHGSISLSARTVR 55
G GKT ++ + RL L G + R +
Sbjct: 26 GTGKTFTIAALYLRLLLGLGGSAAFPRPLT 55
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A
{Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A*
1p73_A* 1p75_A*
Length = 334
Score = 26.2 bits (57), Expect = 5.3
Identities = 5/23 (21%), Positives = 8/23 (34%)
Query: 23 GPSGCGKTTLLSCIVNRLRLDHG 45
G G GK+T + +
Sbjct: 14 GVYGIGKSTTGRVMASAASGGSP 36
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair,
nucleotide excision repai hydrolase-DNA complex; HET:
DNA; 2.90A {Thermotoga maritima}
Length = 916
Score = 25.9 bits (58), Expect = 5.8
Identities = 9/9 (100%), Positives = 9/9 (100%)
Query: 134 ILDEPTVGL 142
ILDEPTVGL
Sbjct: 831 ILDEPTVGL 839
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon
cuniculi}
Length = 218
Score = 25.7 bits (57), Expect = 5.8
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 21 LLGPSGCGKTTLLS 34
L+G G GKTT ++
Sbjct: 16 LIGDGGVGKTTYIN 29
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex,
transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Length = 460
Score = 25.9 bits (56), Expect = 6.1
Identities = 6/25 (24%), Positives = 12/25 (48%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHG 45
++G S GKT+L + + +
Sbjct: 143 IVGGSQTGKTSLSRTLCSYALKFNA 167
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A
{Enterobacteria phage T4} SCOP: c.37.1.1
Length = 181
Score = 25.5 bits (56), Expect = 6.1
Identities = 5/10 (50%), Positives = 6/10 (60%)
Query: 23 GPSGCGKTTL 32
G G GK+T
Sbjct: 9 GCPGSGKSTW 18
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex,
transferase; HET: DTP; 2.80A {Homo sapiens} SCOP:
c.37.1.1
Length = 241
Score = 25.9 bits (56), Expect = 6.2
Identities = 4/18 (22%), Positives = 7/18 (38%)
Query: 23 GPSGCGKTTLLSCIVNRL 40
G GK+T + +
Sbjct: 9 GNIAVGKSTFVKLLTKTY 26
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural
genomics of infec diseases, csgid, metal binding,
transferase; 1.70A {Bacteroides thetaiotaomicron}
Length = 199
Score = 25.7 bits (57), Expect = 6.3
Identities = 8/12 (66%), Positives = 8/12 (66%)
Query: 21 LLGPSGCGKTTL 32
L G G GKTTL
Sbjct: 30 LTGYMGAGKTTL 41
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics,
GTP-binding, nucleotide-binding, signaling protein;
HET: GDP; 1.89A {Plasmodium falciparum}
Length = 208
Score = 25.6 bits (56), Expect = 6.3
Identities = 6/14 (42%), Positives = 10/14 (71%)
Query: 21 LLGPSGCGKTTLLS 34
LLG S GK++++
Sbjct: 12 LLGESSVGKSSIVL 25
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP
phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium
tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A*
1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A*
1w2h_A*
Length = 214
Score = 25.8 bits (57), Expect = 6.4
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 23 GPSGCGKTTLLSCIVNRLR 41
G G GK TL+ + R
Sbjct: 7 GVDGAGKRTLVEKLSGAFR 25
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome
condensation, condensin, SMC, N subunit, ABC-type
ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus
ducreyi} PDB: 3euk_A*
Length = 483
Score = 26.0 bits (56), Expect = 6.4
Identities = 12/43 (27%), Positives = 18/43 (41%)
Query: 11 TVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSART 53
T F L G +G GK+T ++ V L D ++ T
Sbjct: 24 TFDFDELVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTT 66
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function;
HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Length = 251
Score = 25.6 bits (56), Expect = 6.5
Identities = 7/15 (46%), Positives = 8/15 (53%)
Query: 19 YGLLGPSGCGKTTLL 33
L G +G GKTT
Sbjct: 33 VLLTGGTGTGKTTFA 47
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway,
P-loop protein, transferase; 1.8A {Erwinia
chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Length = 173
Score = 25.2 bits (56), Expect = 6.8
Identities = 6/11 (54%), Positives = 8/11 (72%)
Query: 21 LLGPSGCGKTT 31
++G GCG TT
Sbjct: 7 MVGARGCGMTT 17
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding,
nucleotide-binding, hydrolase; 2.70A {Drosophila
melanogaster}
Length = 297
Score = 25.7 bits (57), Expect = 7.0
Identities = 8/16 (50%), Positives = 9/16 (56%)
Query: 21 LLGPSGCGKTTLLSCI 36
L GP G GKT L +
Sbjct: 59 LFGPPGNGKTLLARAV 74
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG,
structural genomics, midwest center for structural
genomics; HET: AMP; 2.30A {Sulfolobus solfataricus}
PDB: 3h0k_A
Length = 179
Score = 25.6 bits (56), Expect = 7.1
Identities = 4/12 (33%), Positives = 6/12 (50%)
Query: 20 GLLGPSGCGKTT 31
+ G G GK+
Sbjct: 5 LITGMPGSGKSE 16
>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET:
BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1
Length = 341
Score = 25.5 bits (55), Expect = 7.2
Identities = 7/25 (28%), Positives = 10/25 (40%)
Query: 23 GPSGCGKTTLLSCIVNRLRLDHGSI 47
G G GKTT ++ + I
Sbjct: 19 GAYGIGKTTAAEEFLHHFAITPNRI 43
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable
holliday junction DNA helicase; HET: ADP; 2.69A
{Campylobacter jejuni subsp}
Length = 338
Score = 25.6 bits (57), Expect = 7.2
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 21 LLGPSGCGKTTLLSCIVNRL 40
GP+G GKTTL + I +
Sbjct: 60 FSGPAGLGKTTLANIISYEM 79
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces
cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Length = 203
Score = 25.2 bits (56), Expect = 7.4
Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 10/41 (24%)
Query: 11 TVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSA 51
+VIF +LG G GK T +V H LSA
Sbjct: 16 SVIF------VLGGPGAGKGTQCEKLVKDYSFVH----LSA 46
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase,
winged-helix domain, ATP hydrolysis, walker A, walker
B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga
maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A*
1in8_A* 1in7_A* 1j7k_A*
Length = 334
Score = 25.6 bits (57), Expect = 7.5
Identities = 11/20 (55%), Positives = 12/20 (60%)
Query: 21 LLGPSGCGKTTLLSCIVNRL 40
L GP G GKTTL I + L
Sbjct: 56 LAGPPGLGKTTLAHIIASEL 75
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide,
hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP:
a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Length = 324
Score = 25.6 bits (57), Expect = 7.7
Identities = 11/20 (55%), Positives = 12/20 (60%)
Query: 21 LLGPSGCGKTTLLSCIVNRL 40
L GP G GKTTL I + L
Sbjct: 43 LFGPPGLGKTTLAHVIAHEL 62
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein,
nucleotide-binding, zinc-binding domain, SOS response,
metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans}
PDB: 2vf8_A*
Length = 842
Score = 25.6 bits (57), Expect = 7.7
Identities = 7/9 (77%), Positives = 8/9 (88%)
Query: 134 ILDEPTVGL 142
+LDEPT GL
Sbjct: 756 VLDEPTTGL 764
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A
{Homo sapiens}
Length = 274
Score = 25.6 bits (57), Expect = 7.7
Identities = 9/12 (75%), Positives = 9/12 (75%)
Query: 21 LLGPSGCGKTTL 32
L GP GCGKT L
Sbjct: 49 LAGPPGCGKTLL 60
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET:
MSE; 1.70A {Methylobacterium extorquens} SCOP:
c.37.1.10 PDB: 2qm7_A*
Length = 337
Score = 25.5 bits (56), Expect = 8.0
Identities = 9/41 (21%), Positives = 17/41 (41%), Gaps = 5/41 (12%)
Query: 1 MADVSASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLR 41
+ V + + G+T G G GK+T + + + L
Sbjct: 45 IDAVLPQTGRAIRVGIT-----GVPGVGKSTTIDALGSLLT 80
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate
kinase); nucleoside monophosphate kinase, NMP kinase;
HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP:
c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Length = 194
Score = 25.2 bits (56), Expect = 8.0
Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 10/41 (24%)
Query: 11 TVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSA 51
V+F +LG G GK T + IV H LSA
Sbjct: 7 NVVF------VLGGPGSGKGTQCANIVRDFGWVH----LSA 37
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling
protein, GDPNP, SLP2A, exophil GTP-binding,
lipoprotein, membrane, methylation; HET: GNP; 1.80A
{Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Length = 195
Score = 25.3 bits (56), Expect = 8.1
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 21 LLGPSGCGKTTLLS 34
LG SG GKT++L
Sbjct: 16 ALGDSGVGKTSVLY 29
>2v1u_A Cell division control protein 6 homolog; DNA replication,
nucleotide-binding, replication, archaea; HET: ADP;
3.10A {Aeropyrum pernix}
Length = 387
Score = 25.5 bits (55), Expect = 8.1
Identities = 9/34 (26%), Positives = 17/34 (50%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV 54
L G +G GKT + ++ RL S+ + + +
Sbjct: 49 LYGLTGTGKTAVARLVLRRLEARASSLGVLVKPI 82
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein;
HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Length = 178
Score = 25.2 bits (56), Expect = 8.3
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 21 LLGPSGCGKTTLLS 34
+LG GKT+L +
Sbjct: 11 VLGDGASGKTSLTT 24
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP
binding motif, ATP- binding, nucleotide-binding,
transferase; HET: ADP; 1.79A {Methanocaldococcus
jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A*
3adb_A*
Length = 260
Score = 25.6 bits (56), Expect = 8.3
Identities = 6/19 (31%), Positives = 8/19 (42%)
Query: 23 GPSGCGKTTLLSCIVNRLR 41
G G GK+T + L
Sbjct: 11 GLPGVGKSTFSKNLAKILS 29
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold,
coiled-coils, ATPase, exonuclease, endonucle binding,
DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB:
3qkr_A*
Length = 203
Score = 25.3 bits (56), Expect = 8.3
Identities = 10/30 (33%), Positives = 18/30 (60%), Gaps = 5/30 (16%)
Query: 10 NTVI---FGVTAYGLLGPSGCGKTTLLSCI 36
+TV+ G+ ++G +G GK++LL I
Sbjct: 16 DTVVEFKEGINL--IIGQNGSGKSSLLDAI 43
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural
genomics, structural genomics consortium, SGC,
signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP:
c.37.1.8 PDB: 2iez_A*
Length = 217
Score = 25.4 bits (56), Expect = 8.9
Identities = 9/14 (64%), Positives = 9/14 (64%)
Query: 21 LLGPSGCGKTTLLS 34
LG SG GKTT L
Sbjct: 30 ALGDSGVGKTTFLY 43
>2fna_A Conserved hypothetical protein; structural genomics, joint center
for structural genomics, J protein structure
initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus
solfataricus} SCOP: a.4.5.11 c.37.1.20
Length = 357
Score = 25.4 bits (55), Expect = 9.5
Identities = 8/31 (25%), Positives = 16/31 (51%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSISLSA 51
+LG GK++++ +N L L + + L
Sbjct: 35 VLGLRRTGKSSIIKIGINELNLPYIYLDLRK 65
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase,
transferase; NMR {Streptococcus pneumoniae} SCOP:
c.37.1.1
Length = 236
Score = 25.1 bits (56), Expect = 9.6
Identities = 5/10 (50%), Positives = 8/10 (80%)
Query: 23 GPSGCGKTTL 32
GP+ GK+T+
Sbjct: 23 GPASSGKSTV 32
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.20A {Homo sapiens}
Length = 200
Score = 24.9 bits (55), Expect = 9.6
Identities = 6/14 (42%), Positives = 10/14 (71%)
Query: 21 LLGPSGCGKTTLLS 34
++G +G GK+ LL
Sbjct: 30 VIGSAGTGKSCLLH 43
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural
changes, replication; 1.95A {Escherichia coli} SCOP:
c.37.1.11 PDB: 1g8y_A 1olo_A
Length = 279
Score = 25.1 bits (54), Expect = 9.8
Identities = 6/13 (46%), Positives = 8/13 (61%)
Query: 21 LLGPSGCGKTTLL 33
L+ P G GK+ L
Sbjct: 35 LVSPGGAGKSMLA 47
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein
transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP:
c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A*
1vg9_B*
Length = 207
Score = 24.9 bits (55), Expect = 9.9
Identities = 8/14 (57%), Positives = 12/14 (85%)
Query: 21 LLGPSGCGKTTLLS 34
+LG SG GKT+L++
Sbjct: 13 ILGDSGVGKTSLMN 26
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.139 0.400
Gapped
Lambda K H
0.267 0.0788 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,152,501
Number of extensions: 116714
Number of successful extensions: 729
Number of sequences better than 10.0: 1
Number of HSP's gapped: 720
Number of HSP's successfully gapped: 328
Length of query: 149
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 64
Effective length of database: 4,328,508
Effective search space: 277024512
Effective search space used: 277024512
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.1 bits)