RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10767
(149 letters)
>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga
maritima [TaxId: 2336]}
Length = 238
Score = 80.8 bits (199), Expect = 5e-20
Identities = 36/142 (25%), Positives = 67/142 (47%), Gaps = 18/142 (12%)
Query: 19 YGLLGPSGCGKTTLLSCIVNRLRLDHGSISL--------SARTVRDIGYMPQV-GLMRSG 69
+GL+GP+G GKTT L I ++ G +++ + I Y+P+ G R+
Sbjct: 31 FGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRN- 89
Query: 70 ALLAEDSPSYLLEYYNCSTLE-----DVFLYLCEQDQILFSLVGSESAFGGQQRRVSFAV 124
+ + ++ +Y S+ E + + + + V + S G R++ A
Sbjct: 90 -MQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSK--GMVRKLLIAR 146
Query: 125 SLIHDPKILILDEPTVGLDPVL 146
+L+ +P++ ILDEPT GLD +
Sbjct: 147 ALMVNPRLAILDEPTSGLDVLN 168
Score = 31.5 bits (71), Expect = 0.023
Identities = 11/63 (17%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 33 LSCIVNRLRLDHGSISLSARTVRDIGYM-PQVGLMRSGALLAEDSPSYLLEYYNCSTLED 91
+ I+ + + +I +S+ + ++ ++ ++ L+ +G ++ + L E Y +E+
Sbjct: 172 VRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYKAQNIEE 231
Query: 92 VFL 94
VF
Sbjct: 232 VFE 234
>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus
furiosus [TaxId: 2261]}
Length = 200
Score = 78.8 bits (194), Expect = 1e-19
Identities = 32/132 (24%), Positives = 54/132 (40%), Gaps = 5/132 (3%)
Query: 19 YGLLGPSGCGKTTLLSCIVNRLRLDHGSISL----SARTVRDIGYMPQVGLMRSGALLAE 74
GP+G GKTTLL I L+ G I + I ++P+ ++ + E
Sbjct: 30 VNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEIIVPRK-ISVE 88
Query: 75 DSPSYLLEYYNCSTLEDVFLYLCEQDQILFSLVGSESAFGGQQRRVSFAVSLIHDPKILI 134
D + Y ++ + E ++L G RRV A +L+ + +I +
Sbjct: 89 DYLKAVASLYGVKVNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYV 148
Query: 135 LDEPTVGLDPVL 146
LD+P V +D
Sbjct: 149 LDDPVVAIDEDS 160
>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance
regulator, CFTR, nucleotide-binding domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 281
Score = 80.3 bits (198), Expect = 1e-19
Identities = 30/134 (22%), Positives = 54/134 (40%), Gaps = 17/134 (12%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAEDSPSY 79
+ G +G GKT+LL I+ L G I S R + + Q + G + +++ +
Sbjct: 66 AITGSTGSGKTSLLMLILGELEASEGIIKHSGR----VSFCSQFSWIMPGTI--KENIIF 119
Query: 80 LLEYYNCSTLEDVFLYLCEQDQILFSLVGSESAF---------GGQQRRVSFAVSLIHDP 130
+ Y + C+ Q + ++ GGQ+ R+S A ++ D
Sbjct: 120 GVSYDEYRYKS--VVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDA 177
Query: 131 KILILDEPTVGLDP 144
+ +LD P LD
Sbjct: 178 DLYLLDSPFGYLDV 191
>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal
domain {Pyrococcus horikoshii [TaxId: 53953]}
Length = 239
Score = 78.3 bits (193), Expect = 4e-19
Identities = 38/140 (27%), Positives = 61/140 (43%), Gaps = 17/140 (12%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISLSAR-------TVRDIGYMPQ-VGLMRSGAL 71
LLGPSGCGKTT L I G I R R+I + Q + +
Sbjct: 36 VLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPH--M 93
Query: 72 LAEDSPSYLLEYYNCSTLE-----DVFLYLCEQDQILFSLVGSESAFGGQQRRVSFAVSL 126
++ ++ L+ E L + +++L S GGQ++RV+ A ++
Sbjct: 94 TVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLS--GGQRQRVAVARAI 151
Query: 127 IHDPKILILDEPTVGLDPVL 146
+ +P +L++DEP LD L
Sbjct: 152 VVEPDVLLMDEPLSNLDAKL 171
>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter
{Thermotoga maritima, TM1139 [TaxId: 2336]}
Length = 240
Score = 76.5 bits (188), Expect = 2e-18
Identities = 36/139 (25%), Positives = 59/139 (42%), Gaps = 16/139 (11%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSI----------SLSARTVRDIGYMPQVGLMRSG 69
L+G +G GKTT LS I +R G I I +P+ +
Sbjct: 36 TLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPE 95
Query: 70 ALLAEDSPSYLLEYYNCS----TLEDVFLYLCEQDQILFSLVGSESAFGGQQRRVSFAVS 125
+ E+ + LE +F + L L G+ S GG+Q+ ++ +
Sbjct: 96 LTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLS--GGEQQMLAIGRA 153
Query: 126 LIHDPKILILDEPTVGLDP 144
L+ PK+L++DEP++GL P
Sbjct: 154 LMSRPKLLMMDEPSLGLAP 172
>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export
ATP-binding/permease protein SAV1866 {Staphylococcus
aureus [TaxId: 1280]}
Length = 255
Score = 75.6 bits (186), Expect = 4e-18
Identities = 34/140 (24%), Positives = 60/140 (42%), Gaps = 15/140 (10%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMP---QVGLMRSGALLAEDS 76
+G SG GK+TL++ I + G I + ++D Q+GL++ +L D+
Sbjct: 48 AFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDT 107
Query: 77 PSYLLEYYNCSTLEDVFLYLCEQDQI----------LFSLVGSESAF--GGQQRRVSFAV 124
+ + ++ + + + VG GGQ++R+S A
Sbjct: 108 VKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIAR 167
Query: 125 SLIHDPKILILDEPTVGLDP 144
+++P ILILDE T LD
Sbjct: 168 IFLNNPPILILDEATSALDL 187
>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 230
Score = 74.5 bits (183), Expect = 1e-17
Identities = 34/148 (22%), Positives = 58/148 (39%), Gaps = 25/148 (16%)
Query: 19 YGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAEDSPS 78
++GPSG GK+T+L+ I + G + + D+ + R +
Sbjct: 34 VSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFN 93
Query: 79 YLLEYYNCSTLEDVFLYLC-------------EQDQILFSLVGSESAF---------GGQ 116
+ LE+V L L ++ + E F GGQ
Sbjct: 94 L---IPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQ 150
Query: 117 QRRVSFAVSLIHDPKILILDEPTVGLDP 144
Q+RV+ A +L ++P I++ D+PT LD
Sbjct: 151 QQRVAIARALANNPPIILADQPTGALDS 178
>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA,
C-terminal domain {Lactococcus lactis [TaxId: 1358]}
Length = 242
Score = 73.0 bits (179), Expect = 4e-17
Identities = 33/141 (23%), Positives = 59/141 (41%), Gaps = 16/141 (11%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIG---YMPQVGLMRSGALL---- 72
GPSG GK+T+ S + + G I++ + + +I + Q+G + + +
Sbjct: 32 AFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAGT 91
Query: 73 -AEDSPSYLLEYYNCSTLEDVFLYLCEQDQILFSLVGSESAF--------GGQQRRVSFA 123
E+ L Y L V + + + GGQ++R++ A
Sbjct: 92 IRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIA 151
Query: 124 VSLIHDPKILILDEPTVGLDP 144
+ + +PKIL+LDE T LD
Sbjct: 152 RAFLRNPKILMLDEATASLDS 172
>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 254
Score = 70.8 bits (173), Expect = 3e-16
Identities = 35/155 (22%), Positives = 59/155 (38%), Gaps = 29/155 (18%)
Query: 19 YGLLGPSGCGKTTLLSCIVNRLRLDHGSISL----------SARTVRDIGYMPQVGL--- 65
++GP+G GK+TL++ I L+ D G + + I Q
Sbjct: 33 TLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLK 92
Query: 66 -------MRSGALLAEDSPSYLLEYYNCSTLEDV-------FLYLCEQDQILFSLVGSES 111
+ G + +SP L Y E+ L + + G S
Sbjct: 93 EMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELS 152
Query: 112 AFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVL 146
GGQ + V +L+ +PK++++DEP G+ P L
Sbjct: 153 --GGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGL 185
>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter
MsbA, C-terminal domain {Salmonella typhimurium [TaxId:
90371]}
Length = 253
Score = 70.3 bits (172), Expect = 4e-16
Identities = 34/141 (24%), Positives = 60/141 (42%), Gaps = 16/141 (11%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRD---------IGYMPQ-----VGL 65
L+G SG GK+T+ S I +D G I + +R+ + + Q
Sbjct: 45 ALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDT 104
Query: 66 MRSGALLAEDSPSYLLEYYNCSTLEDVFLYLCEQDQILFSLVGSESAF--GGQQRRVSFA 123
+ + A + + + ++ + D L +++G GGQ++R++ A
Sbjct: 105 VANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIA 164
Query: 124 VSLIHDPKILILDEPTVGLDP 144
+L+ D ILILDE T LD
Sbjct: 165 RALLRDSPILILDEATSALDT 185
>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine
permease {Salmonella typhimurium [TaxId: 90371]}
Length = 258
Score = 69.9 bits (171), Expect = 6e-16
Identities = 39/165 (23%), Positives = 61/165 (36%), Gaps = 48/165 (29%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV----------------------RDI 57
++G SG GK+T L CI + G+I ++ + + +
Sbjct: 32 SIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRL 91
Query: 58 GYMPQ---------------VGLMRSGALLAEDSPSYLLEYYNCSTLEDVFLYLCEQDQI 102
+ Q ++ L D+ L+Y L V + Q +
Sbjct: 92 TMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKY-----LAKVGIDERAQGKY 146
Query: 103 LFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDPVLS 147
L GGQQ+RVS A +L +P +L+ DEPT LDP L
Sbjct: 147 PVHL------SGGQQQRVSIARALAMEPDVLLFDEPTSALDPELV 185
>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK,
N-terminal domain {Archaeon Thermococcus litoralis
[TaxId: 2265]}
Length = 240
Score = 69.2 bits (169), Expect = 9e-16
Identities = 36/142 (25%), Positives = 53/142 (37%), Gaps = 15/142 (10%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAEDSPSY 79
LLGPSGCGKTT L I G I + + V D V + S +
Sbjct: 33 ILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYAL 92
Query: 80 LLEYYNCSTLEDVFLYL----CEQDQI---LFSLVGSESAF--------GGQQRRVSFAV 124
+ E DQ + L+G GGQ++RV+
Sbjct: 93 YPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGR 152
Query: 125 SLIHDPKILILDEPTVGLDPVL 146
+++ P++ ++DEP LD L
Sbjct: 153 AIVRKPQVFLMDEPLSNLDAKL 174
>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 232
Score = 68.8 bits (168), Expect = 1e-15
Identities = 36/144 (25%), Positives = 60/144 (41%), Gaps = 25/144 (17%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRD-------IGYMPQVGLMRSGALL 72
+GPSGCGK+TLL I + G + + + + D +G + Q L
Sbjct: 30 VFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQ-SYALYPHLS 88
Query: 73 AEDSPSYLLEYYNCST----------LEDVFLYLCEQDQILFSLVGSESAFGGQQRRVSF 122
++ S+ L+ E + L +L + S GGQ++RV+
Sbjct: 89 VAENMSFGLKLAGAKKEVINQRVNQVAEVLQL-----AHLLDRKPKALS--GGQRQRVAI 141
Query: 123 AVSLIHDPKILILDEPTVGLDPVL 146
+L+ +P + +LDEP LD L
Sbjct: 142 GRTLVAEPSVFLLDEPLSNLDAAL 165
>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12
uptake, BtuD {Escherichia coli [TaxId: 562]}
Length = 231
Score = 67.7 bits (165), Expect = 3e-15
Identities = 32/142 (22%), Positives = 52/142 (36%), Gaps = 20/142 (14%)
Query: 19 YGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRD---------IGYMPQVGLMRSG 69
L+GP+G GK+TLL+ + + GSI + + + Y+ Q
Sbjct: 28 LHLVGPNGAGKSTLLARM-AGMTSGKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFA 86
Query: 70 ALLAEDSPSYLLEYYNCSTLEDVFLYLCEQDQILFSLVGSESAFGGQQRRVSFAVSLIH- 128
+ + + L DV D L S GG+ +RV A ++
Sbjct: 87 TPVWHYLTLHQHDKTRTELLNDV-AGALALDDKLGRSTNQLS--GGEWQRVRLAAVVLQI 143
Query: 129 ------DPKILILDEPTVGLDP 144
++L+LDEP LD
Sbjct: 144 TPQANPAGQLLLLDEPMNSLDV 165
>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein
{Escherichia coli [TaxId: 562]}
Length = 241
Score = 67.2 bits (164), Expect = 6e-15
Identities = 35/140 (25%), Positives = 57/140 (40%), Gaps = 15/140 (10%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIG---YMPQVGLMRSGALLAEDS 76
G++G SG GK+TL I ++G + + + QVG++ +L S
Sbjct: 33 GIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRS 92
Query: 77 P----SYLLEYYNCSTLEDVFLYLCEQDQILFSLVGSESAF--------GGQQRRVSFAV 124
S + + D I G + GGQ++R++ A
Sbjct: 93 IIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIAR 152
Query: 125 SLIHDPKILILDEPTVGLDP 144
+L+++PKILI DE T LD
Sbjct: 153 ALVNNPKILIFDEATSALDY 172
>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein
MetN {Escherichia coli [TaxId: 562]}
Length = 240
Score = 66.4 bits (162), Expect = 9e-15
Identities = 39/144 (27%), Positives = 64/144 (44%), Gaps = 22/144 (15%)
Query: 19 YGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAEDSPS 78
YG++G SG GK+TL+ C+ R GS+ + + + + R ++ +
Sbjct: 34 YGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNL 93
Query: 79 YLLEYYNCSTLEDVFLYLCEQ----DQI------LFSLVGSESAF--------GGQQRRV 120
+ + +V L L D++ L SLVG GGQ++RV
Sbjct: 94 L----SSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRV 149
Query: 121 SFAVSLIHDPKILILDEPTVGLDP 144
+ A +L +PK+L+ DE T LDP
Sbjct: 150 AIARALASNPKVLLCDEATSALDP 173
>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding
protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId:
2234]}
Length = 240
Score = 61.6 bits (149), Expect = 7e-13
Identities = 34/136 (25%), Positives = 58/136 (42%), Gaps = 15/136 (11%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV-------RDIGYMPQ----VGLMRS 68
LLGP+G GK+ L I ++ D G + L+ + R IG++PQ +
Sbjct: 28 VLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSV 87
Query: 69 GALLAEDSPSYLLEYYNCSTLEDVFLYLCEQDQILFSLVGSESAFGGQQRRVSFAVSLIH 128
+A + + E +L S GG+++RV+ A +L+
Sbjct: 88 YRNIAYGLRNVERVERDRRVRE--MAEKLGIAHLLDRKPARLS--GGERQRVALARALVI 143
Query: 129 DPKILILDEPTVGLDP 144
P++L+LDEP +D
Sbjct: 144 QPRLLLLDEPLSAVDL 159
>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 251
Score = 61.1 bits (148), Expect = 1e-12
Identities = 30/141 (21%), Positives = 56/141 (39%), Gaps = 16/141 (11%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV---------RDIGYMPQV-----GL 65
L+GP+G GK+T+ + + N + G + L + + R + + Q
Sbjct: 44 ALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRS 103
Query: 66 MRSGALLAEDSPSYLLEYYNCSTLEDVFLYLCEQDQILFSLVGSESAF--GGQQRRVSFA 123
++ + E + ++ Q + V + GGQ++ V+ A
Sbjct: 104 LQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALA 163
Query: 124 VSLIHDPKILILDEPTVGLDP 144
+LI P +LILD+ T LD
Sbjct: 164 RALIRKPCVLILDDATSALDA 184
>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV,
N-terminal domain {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 242
Score = 60.1 bits (145), Expect = 2e-12
Identities = 38/139 (27%), Positives = 54/139 (38%), Gaps = 14/139 (10%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV------------RDIGYMPQVGLMR 67
G+LGPSG GKTT + I G + R V R IG + Q +
Sbjct: 35 GILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALY 94
Query: 68 SGALLAEDSPSYL-LEYYNCSTLEDVFLYLCEQDQILFSLVGSESAF-GGQQRRVSFAVS 125
E+ L + + + + I L G QQ+RV+ A +
Sbjct: 95 PNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARA 154
Query: 126 LIHDPKILILDEPTVGLDP 144
L+ DP +L+LDEP LD
Sbjct: 155 LVKDPSLLLLDEPFSNLDA 173
>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter,
ATP-binding protein {Methanosarcina acetivorans [TaxId:
2214]}
Length = 229
Score = 57.0 bits (137), Expect = 3e-11
Identities = 36/135 (26%), Positives = 57/135 (42%), Gaps = 10/135 (7%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDI-------GYMPQ-VGLMRSGAL 71
+LGP+G GKT L I D G I L + V D+ ++ Q L +
Sbjct: 30 VILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPH--M 87
Query: 72 LAEDSPSYLLEYYNCSTLEDVFLYLCEQDQILFSLVGSESAFGGQQRRVSFAVSLIHDPK 131
+ + + + + V + + GG+Q+RV+ A +L+ +PK
Sbjct: 88 NVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPK 147
Query: 132 ILILDEPTVGLDPVL 146
IL+LDEP LDP
Sbjct: 148 ILLLDEPLSALDPRT 162
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein
Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
Length = 178
Score = 52.3 bits (124), Expect = 8e-10
Identities = 22/125 (17%), Positives = 33/125 (26%), Gaps = 14/125 (11%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAEDSPSY 79
+ G G GKTTL+ IV RL VRD + G E
Sbjct: 4 IITGEPGVGKTTLVKKIVERLGKRAIGFWT--EEVRDPETKKRTGFRIIT---TEGKKKI 58
Query: 80 LLEYYNCSTLEDVFLYLCEQDQILFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEPT 139
+ S + Q ++ + K++I+DE
Sbjct: 59 FSSKFFTSKKLVGSYGVNVQYFEE---------LAIPILERAYREAKKDRRKVIIIDEIG 109
Query: 140 VGLDP 144
Sbjct: 110 KMELF 114
>g1ii8.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 369
Score = 41.7 bits (96), Expect = 1e-05
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 108 GSESAFGGQQRRVSFAVSLIHDPKILILDEPTVGLDP 144
G E G R++ ++ L + +LILDEPT LD
Sbjct: 281 GGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDE 317
Score = 32.1 bits (71), Expect = 0.021
Identities = 8/22 (36%), Positives = 14/22 (63%), Gaps = 2/22 (9%)
Query: 15 GVTAYGLLGPSGCGKTTLLSCI 36
G+ ++G +G GK++LL I
Sbjct: 24 GINL--IIGQNGSGKSSLLDAI 43
>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId:
562]}
Length = 205
Score = 38.3 bits (88), Expect = 1e-04
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSISLSART 53
+ PSG GK++L+ ++ L +S+S T
Sbjct: 7 VSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTT 39
>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Bacillus stearothermophilus
[TaxId: 1422]}
Length = 165
Score = 37.5 bits (86), Expect = 2e-04
Identities = 9/60 (15%), Positives = 14/60 (23%), Gaps = 15/60 (25%)
Query: 13 IFGVTAYGLLGPSGCGKTTLLSCIVNRLR----------LDHGSISLSARTVRDIGYMPQ 62
++ V G GKTTL+ V + D +
Sbjct: 3 VWQVV-----GYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGHGGEPARPEGVDSVRHER 57
>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal
domain {Aeropyrum pernix [TaxId: 56636]}
Length = 287
Score = 37.0 bits (84), Expect = 4e-04
Identities = 12/82 (14%), Positives = 23/82 (28%)
Query: 18 AYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAEDSP 77
YG +G G GKTTL V R+ L+ + + ++ +
Sbjct: 48 IYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGY 107
Query: 78 SYLLEYYNCSTLEDVFLYLCEQ 99
+ + +
Sbjct: 108 PIQVRGAPALDILKALVDNLYV 129
>g1f2t.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 292
Score = 36.7 bits (83), Expect = 4e-04
Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 6/38 (15%)
Query: 113 FGGQQRRV------SFAVSLIHDPKILILDEPTVGLDP 144
GG++ + + ++ L + +LILDEPT LD
Sbjct: 203 SGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDE 240
Score = 36.7 bits (83), Expect = 5e-04
Identities = 9/26 (34%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Query: 15 GVTAYGLLGPSGCGKTTLLSCIVNRL 40
G+ ++G +G GK++LL I+ L
Sbjct: 24 GINL--IIGQNGSGKSSLLDAILVGL 47
>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 182
Score = 36.1 bits (82), Expect = 6e-04
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSIS 48
L GPS GK+T++ C+ R+ H S+S
Sbjct: 7 LSGPSAVGKSTVVRCLRERIPNLHFSVS 34
>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 190
Score = 35.3 bits (80), Expect = 0.001
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 7/36 (19%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSI---SLSART 53
L GPSG GK+TL + +L +H SI S+S T
Sbjct: 5 LSGPSGAGKSTL----LKKLFQEHSSIFGFSVSHTT 36
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta,
toxin zeta subunit {Streptococcus pyogenes [TaxId:
1314]}
Length = 273
Score = 34.9 bits (79), Expect = 0.002
Identities = 10/30 (33%), Positives = 13/30 (43%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSISLS 50
L G G GKT+L S I + + I
Sbjct: 37 LGGQPGSGKTSLRSAIFEETQGNVIVIDND 66
>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 286
Score = 34.8 bits (79), Expect = 0.002
Identities = 9/26 (34%), Positives = 11/26 (42%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHG 45
GP G GK+ I N L +G
Sbjct: 31 FFSGPQGSGKSFTSIQIYNHLMEKYG 56
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 189
Score = 34.6 bits (78), Expect = 0.002
Identities = 12/58 (20%), Positives = 18/58 (31%), Gaps = 2/58 (3%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAEDSP 77
L GP G GKTTL+ L+ + ++ + L P
Sbjct: 5 FLTGPPGVGKTTLIHKASEVLKSSGVPVDGFY--TEEVRQGGRRIGFDVVTLSGTRGP 60
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Escherichia coli [TaxId:
562]}
Length = 170
Score = 34.2 bits (77), Expect = 0.003
Identities = 12/45 (26%), Positives = 15/45 (33%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVG 64
SG GKTTLL ++ L L T D+
Sbjct: 6 AFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHDMDVDKPGK 50
>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens),
isoenzyme 6 [TaxId: 9606]}
Length = 173
Score = 33.8 bits (76), Expect = 0.004
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDH 44
L G G GKTTL + ++ L +
Sbjct: 9 LTGTPGVGKTTLGKELASKSGLKY 32
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus
voltae [TaxId: 2188]}
Length = 190
Score = 33.8 bits (76), Expect = 0.004
Identities = 9/40 (22%), Positives = 16/40 (40%), Gaps = 6/40 (15%)
Query: 10 NTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISL 49
N V+ + G G G TT ++ LR + + +
Sbjct: 1 NKVVV------VTGVPGVGSTTSSQLAMDNLRKEGVNYKM 34
>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK
{Escherichia coli [TaxId: 562]}
Length = 327
Score = 34.1 bits (77), Expect = 0.004
Identities = 10/46 (21%), Positives = 18/46 (39%), Gaps = 3/46 (6%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISLSA---RTVRDIGYMPQ 62
G+ G G GK+T L L + +++ A + G +
Sbjct: 58 GVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILG 103
>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human
(Homo sapiens) [TaxId: 9606]}
Length = 178
Score = 33.7 bits (76), Expect = 0.004
Identities = 8/49 (16%), Positives = 17/49 (34%), Gaps = 1/49 (2%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHG-SISLSARTVRDIGYMPQVGLMRS 68
LLG G G+ + + ++ + I + R + + S
Sbjct: 8 LLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVS 56
>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum
[TaxId: 44689]}
Length = 194
Score = 33.4 bits (75), Expect = 0.005
Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 2/48 (4%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRS 68
+LG G GK T + IV H +S ++ + G M +
Sbjct: 11 VLGGPGSGKGTQCANIVRDFGWVH--LSAGDLLRQEQQSGSKDGEMIA 56
>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId:
9823]}
Length = 194
Score = 33.4 bits (75), Expect = 0.005
Identities = 11/47 (23%), Positives = 17/47 (36%), Gaps = 2/47 (4%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMR 67
++G G GK T IV + H +S ++ G M
Sbjct: 13 VVGGPGSGKGTQCEKIVQKYGYTH--LSTGDLLRAEVSSGSARGKML 57
>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 180
Score = 33.4 bits (75), Expect = 0.005
Identities = 9/24 (37%), Positives = 11/24 (45%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDH 44
L+GP G GK T + R H
Sbjct: 7 LIGPPGAGKGTQAPNLQERFHAAH 30
>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea
mays) [TaxId: 4577]}
Length = 189
Score = 33.3 bits (75), Expect = 0.005
Identities = 8/28 (28%), Positives = 11/28 (39%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSIS 48
+ G GK T I + +L H S
Sbjct: 8 ISGAPASGKGTQCELIKTKYQLAHISAG 35
>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 198
Score = 33.2 bits (74), Expect = 0.006
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLR 41
G+ G S GKTTL + + LR
Sbjct: 26 GIDGLSRSGKTTLANQLSQTLR 47
>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 196
Score = 33.0 bits (74), Expect = 0.006
Identities = 13/42 (30%), Positives = 16/42 (38%), Gaps = 6/42 (14%)
Query: 11 TVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSAR 52
+VIF +LG G GK T +V H S R
Sbjct: 9 SVIF------VLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLR 44
>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 182
Score = 33.0 bits (74), Expect = 0.008
Identities = 9/24 (37%), Positives = 11/24 (45%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDH 44
L+G G GK T IV + H
Sbjct: 5 LMGLPGAGKGTQAEKIVAAYGIPH 28
>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus
acidocaldarius [TaxId: 2285]}
Length = 194
Score = 33.1 bits (74), Expect = 0.008
Identities = 7/29 (24%), Positives = 14/29 (48%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSISL 49
+ G G GK+T+L+ + L + +
Sbjct: 6 VTGIPGVGKSTVLAKVKEILDNQGINNKI 34
>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania
major [TaxId: 5664]}
Length = 174
Score = 32.7 bits (73), Expect = 0.008
Identities = 7/24 (29%), Positives = 10/24 (41%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDH 44
+ G G GKT++ I L
Sbjct: 10 ITGTPGTGKTSMAEMIAAELDGFQ 33
>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus
halodurans [TaxId: 86665]}
Length = 176
Score = 32.7 bits (73), Expect = 0.008
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDH 44
+ GP+G GK+T + +L
Sbjct: 7 ITGPAGVGKSTTCKRLAAQLDNSA 30
>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 186
Score = 33.0 bits (74), Expect = 0.008
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV 54
+ GPSG GK+TLL + G S+S+ T
Sbjct: 6 ISGPSGTGKSTLLKKLFAEYPDSFG-FSVSSTTR 38
>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARL1 [TaxId: 9606]}
Length = 169
Score = 32.8 bits (73), Expect = 0.008
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 21 LLGPSGCGKTTLLSCIVN 38
+LG G GKTT+L +
Sbjct: 10 ILGLDGAGKTTILYRLQV 27
>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos
taurus), mitochondrial izozyme-3 [TaxId: 9913]}
Length = 189
Score = 32.5 bits (73), Expect = 0.010
Identities = 11/46 (23%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLM 66
++G G GK T+ S I L H +S ++ ++G++
Sbjct: 11 IMGAPGSGKGTVSSRITKHFELKH--LSSGDLLRDNMLRGTEIGVL 54
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 176
Score = 32.6 bits (73), Expect = 0.010
Identities = 7/35 (20%), Positives = 14/35 (40%), Gaps = 2/35 (5%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVR 55
L G G GK+T+ + N + + + +
Sbjct: 9 LSGHPGSGKSTIAEALANLPGVPK--VHFHSDDLW 41
>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos
taurus), mitochondrial izozyme-2 [TaxId: 9913]}
Length = 190
Score = 32.6 bits (73), Expect = 0.011
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSI 47
LLGP G GK T + + H +
Sbjct: 8 LLGPPGAGKGTQAPKLAKNFCVCHLAT 34
>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase
{Escherichia coli [TaxId: 562]}
Length = 179
Score = 32.2 bits (72), Expect = 0.011
Identities = 7/24 (29%), Positives = 10/24 (41%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDH 44
LLG GK T I+ + +
Sbjct: 5 LLGAPVAGKGTQAQFIMEKYGIPQ 28
>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 181
Score = 32.2 bits (72), Expect = 0.012
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDH 44
LLGP G GK T + +L +
Sbjct: 5 LLGPPGAGKGTQAVKLAEKLGIPQ 28
>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
{Thermus thermophilus [TaxId: 274]}
Length = 247
Score = 32.5 bits (74), Expect = 0.012
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSISLS 50
L+GP G GKT L + R+ + S S
Sbjct: 47 LVGPPGVGKTHLARAVAGEARVPFITASGS 76
>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo
sapiens), ARL8A [TaxId: 9606]}
Length = 164
Score = 32.4 bits (72), Expect = 0.012
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 21 LLGPSGCGKTTLLSCIVN 38
L+G GKTT ++ I +
Sbjct: 7 LVGLQYSGKTTFVNVIAS 24
>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId:
562]}
Length = 171
Score = 32.3 bits (72), Expect = 0.012
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDH 44
L+G SG GK+ + S + ++L
Sbjct: 11 LMGVSGSGKSAVASEVAHQLHAAF 34
>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 166
Score = 32.0 bits (71), Expect = 0.013
Identities = 9/18 (50%), Positives = 10/18 (55%)
Query: 21 LLGPSGCGKTTLLSCIVN 38
LG GKTTLL + N
Sbjct: 5 FLGLDNAGKTTLLHMLKN 22
>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 213
Score = 32.2 bits (72), Expect = 0.014
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLR 41
G+ G + GK+++ + IV L
Sbjct: 6 GVSGGTASGKSSVCAKIVQLLG 27
>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus
globisporus [TaxId: 1459]}
Length = 182
Score = 32.2 bits (72), Expect = 0.015
Identities = 9/24 (37%), Positives = 11/24 (45%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDH 44
L+G G GK T IV + H
Sbjct: 5 LMGLPGAGKGTQADRIVEKYGTPH 28
>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase
domain {Simian virus 40 [TaxId: 10633]}
Length = 362
Score = 32.3 bits (73), Expect = 0.015
Identities = 17/119 (14%), Positives = 34/119 (28%), Gaps = 20/119 (16%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAE-DSPSY 79
GP GKTTL + ++ +++++ R + V + + + +
Sbjct: 159 FKGPIDSGKTTLAAALLELCGGK--ALNVNLPLDRLNFEL-GVAIDQFLVVFEDVKGTGG 215
Query: 80 LLEYYNCSTLEDVFLYLCEQDQILFSLVGSESAFGGQQRRVSFAVSLIHDPKILILDEP 138
+ D + L GS V + H K + P
Sbjct: 216 ESRDLPSGQGIN------NLDNLRDYLDGS----------VKVNLEKKHLNKRTQIFPP 258
>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 194
Score = 31.9 bits (71), Expect = 0.016
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDH 44
+LG G GK T + IV + H
Sbjct: 6 VLGGPGAGKGTQCARIVEKYGYTH 29
>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB
{Thermus thermophilus [TaxId: 274]}
Length = 239
Score = 32.2 bits (72), Expect = 0.016
Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQ 62
L GP G GKTTL I + L ++ S + G +
Sbjct: 40 LFGPPGLGKTTLAHVIAHELGVNL--RVTSGPAIEKPGDLAA 79
>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF1 [TaxId: 9606]}
Length = 160
Score = 31.9 bits (71), Expect = 0.016
Identities = 6/18 (33%), Positives = 10/18 (55%)
Query: 21 LLGPSGCGKTTLLSCIVN 38
++G GKTT+L +
Sbjct: 5 MVGLDAAGKTTILYKLKL 22
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL2 [TaxId: 10090]}
Length = 165
Score = 31.9 bits (71), Expect = 0.017
Identities = 7/18 (38%), Positives = 9/18 (50%)
Query: 21 LLGPSGCGKTTLLSCIVN 38
+LG GKTT+L
Sbjct: 7 MLGLDNAGKTTILKKFNG 24
>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 165
Score = 31.5 bits (70), Expect = 0.020
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDH 44
L+G G GK+T+ + L +
Sbjct: 6 LVGLPGSGKSTIGRRLAKALGVGL 29
>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 427
Score = 32.0 bits (71), Expect = 0.021
Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 4/37 (10%)
Query: 113 FGGQQRRVS----FAVSLIHDPKILILDEPTVGLDPV 145
GG++ + FA++ +LDE LD
Sbjct: 334 SGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDIT 370
Score = 29.3 bits (64), Expect = 0.20
Identities = 11/43 (25%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
Query: 15 GVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDI 57
T+ ++GP+G GK+ ++ I L S L + ++D+
Sbjct: 26 NFTS--IIGPNGSGKSNMMDAI--SFVLGVRSNHLRSNILKDL 64
>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 31.4 bits (70), Expect = 0.022
Identities = 9/26 (34%), Positives = 14/26 (53%), Gaps = 4/26 (15%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGS 46
LLG GK+ + ++R+ HGS
Sbjct: 7 LLGTGESGKS----TFIKQMRIIHGS 28
>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId:
9606]}
Length = 168
Score = 31.6 bits (70), Expect = 0.023
Identities = 7/19 (36%), Positives = 8/19 (42%)
Query: 21 LLGPSGCGKTTLLSCIVNR 39
LLG G GK+ L
Sbjct: 6 LLGAPGVGKSALARIFGGV 24
>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter
sphaeroides [TaxId: 1063]}
Length = 288
Score = 31.8 bits (72), Expect = 0.023
Identities = 10/34 (29%), Positives = 12/34 (35%), Gaps = 5/34 (14%)
Query: 8 SLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLR 41
S I VT G SG G +T+ R
Sbjct: 1 SKKHPIISVT-----GSSGAGTSTVKHTFDQIFR 29
>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal
domain {Thermotoga maritima [TaxId: 2336]}
Length = 225
Score = 31.6 bits (71), Expect = 0.023
Identities = 18/83 (21%), Positives = 33/83 (39%), Gaps = 4/83 (4%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAEDSP--- 77
+ G SG GK++LL+ I L+L +S + R Q+ G + D+P
Sbjct: 100 MAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVV-DTPGFA 158
Query: 78 SYLLEYYNCSTLEDVFLYLCEQD 100
+ + L+ F ++
Sbjct: 159 NLEINDIEPEELKHYFKEFGDKQ 181
>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 31.4 bits (70), Expect = 0.023
Identities = 10/28 (35%), Positives = 14/28 (50%), Gaps = 4/28 (14%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSIS 48
LLG GK+T L ++R+ HG
Sbjct: 7 LLGAGESGKSTFL----KQMRIIHGQDP 30
>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit)
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 195
Score = 31.5 bits (70), Expect = 0.024
Identities = 8/24 (33%), Positives = 13/24 (54%), Gaps = 4/24 (16%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDH 44
LLG GK+ IV ++++ H
Sbjct: 7 LLGAGESGKS----TIVKQMKIIH 26
>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus)
[TaxId: 10029]}
Length = 186
Score = 31.6 bits (70), Expect = 0.025
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 21 LLGPSGCGKTTLLSCIVN 38
LG GKTTLL + +
Sbjct: 18 FLGLDNAGKTTLLHMLKD 35
>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli
[TaxId: 562]}
Length = 169
Score = 31.2 bits (69), Expect = 0.025
Identities = 9/42 (21%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQ 62
L+GP G GK+T+ + +L ++ + G
Sbjct: 7 LVGPMGAGKSTIGRQLAQQLNMEF--YDSDQEIEKRTGADVG 46
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor
beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}
Length = 207
Score = 31.5 bits (70), Expect = 0.025
Identities = 5/18 (27%), Positives = 8/18 (44%)
Query: 21 LLGPSGCGKTTLLSCIVN 38
+G GKT L ++
Sbjct: 5 FVGLCDSGKTLLFVRLLT 22
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 283
Score = 31.6 bits (70), Expect = 0.025
Identities = 7/28 (25%), Positives = 15/28 (53%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSIS 48
+LG GK++++ +N L L + +
Sbjct: 34 VLGLRRTGKSSIIKIGINELNLPYIYLD 61
>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia
chrysanthemi [TaxId: 556]}
Length = 170
Score = 31.1 bits (69), Expect = 0.026
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDH 44
++G GCG TT+ + L +
Sbjct: 7 MVGARGCGMTTVGRELARALGYEF 30
>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain
{Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Length = 183
Score = 31.2 bits (69), Expect = 0.029
Identities = 6/25 (24%), Positives = 8/25 (32%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHG 45
L G GK + + L G
Sbjct: 11 LTGYMNSGKDAIARALQVTLNQQGG 35
>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho,
ATPase domain {Escherichia coli [TaxId: 562]}
Length = 289
Score = 31.5 bits (71), Expect = 0.030
Identities = 19/141 (13%), Positives = 38/141 (26%), Gaps = 13/141 (9%)
Query: 8 SLNTVIFGVTAYGLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIG--YMPQVGL 65
+ + G ++ P GKT LL I + +H L + + L
Sbjct: 36 LASPIGRGQRG-LIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRL 94
Query: 66 MRSGALLAEDSPSYLLEYYNCSTLEDVFLYLCEQDQILFSLVGSESAFGGQQRRVSFAVS 125
++ + + + + L E + + L+ S + V
Sbjct: 95 VKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVV---P 151
Query: 126 LIHDPKILILDEPTVGLDPVL 146
T G+D
Sbjct: 152 ASGKV-------LTGGVDANA 165
>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 184
Score = 31.2 bits (69), Expect = 0.031
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 21 LLGPSGCGKTTLLSCIVNR 39
+LG SG GKT+L++ VN+
Sbjct: 7 ILGDSGVGKTSLMNQYVNK 25
>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 253
Score = 31.3 bits (69), Expect = 0.031
Identities = 10/24 (41%), Positives = 11/24 (45%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDH 44
L GP G GKTT + L D
Sbjct: 57 LYGPPGIGKTTAAHLVAQELGYDI 80
>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 30.8 bits (68), Expect = 0.034
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 21 LLGPSGCGKTTLLSCIVN 38
L+G G GKTT + +
Sbjct: 8 LVGDGGTGKTTFVKRHLT 25
>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR,
ribosylnicotinamide kinase domain {Haemophilus
influenzae [TaxId: 727]}
Length = 192
Score = 31.2 bits (69), Expect = 0.034
Identities = 5/20 (25%), Positives = 10/20 (50%)
Query: 21 LLGPSGCGKTTLLSCIVNRL 40
+LG GK+ L++ +
Sbjct: 12 ILGGESSGKSVLVNKLAAVF 31
>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo
sapiens), ARL5A [TaxId: 9606]}
Length = 177
Score = 30.7 bits (68), Expect = 0.036
Identities = 6/18 (33%), Positives = 9/18 (50%)
Query: 21 LLGPSGCGKTTLLSCIVN 38
++G GKTT+L
Sbjct: 20 IVGLDNAGKTTILYQFSM 37
>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}
Length = 177
Score = 30.7 bits (68), Expect = 0.036
Identities = 7/18 (38%), Positives = 9/18 (50%)
Query: 21 LLGPSGCGKTTLLSCIVN 38
++G CGKT LL
Sbjct: 7 IVGDGACGKTCLLIVNSK 24
>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo
sapiens) [TaxId: 9606]}
Length = 167
Score = 30.9 bits (68), Expect = 0.038
Identities = 6/18 (33%), Positives = 9/18 (50%)
Query: 21 LLGPSGCGKTTLLSCIVN 38
+LG GK++L V
Sbjct: 9 ILGYRSVGKSSLTIQFVE 26
>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}
Length = 225
Score = 31.2 bits (69), Expect = 0.038
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 23 GPSGCGKTTLLSCIVNRLRLDH 44
GPSG GK TL + L+
Sbjct: 10 GPSGAGKGTLCKAMAEALQWHL 31
>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 30.8 bits (68), Expect = 0.039
Identities = 5/19 (26%), Positives = 9/19 (47%)
Query: 21 LLGPSGCGKTTLLSCIVNR 39
++G G GK+ L +
Sbjct: 11 VVGGGGVGKSALTIQFIQS 29
>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 164
Score = 30.8 bits (68), Expect = 0.041
Identities = 3/18 (16%), Positives = 9/18 (50%)
Query: 21 LLGPSGCGKTTLLSCIVN 38
++G GK++++
Sbjct: 7 VVGNGAVGKSSMIQRYCK 24
>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae
[TaxId: 1313]}
Length = 223
Score = 30.7 bits (68), Expect = 0.042
Identities = 6/22 (27%), Positives = 10/22 (45%)
Query: 23 GPSGCGKTTLLSCIVNRLRLDH 44
GP+ GK+T+ I +
Sbjct: 10 GPASSGKSTVAKIIAKDFGFTY 31
>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 175
Score = 30.8 bits (68), Expect = 0.043
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 21 LLGPSGCGKTTLLSCIVN 38
+LG SG GKT+L+ VN
Sbjct: 7 ILGDSGVGKTSLMHRYVN 24
>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor
beta-subunit {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 209
Score = 30.8 bits (68), Expect = 0.044
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 21 LLGPSGCGKTTLLSCIVNR 39
+ GP GKT+LL+ +
Sbjct: 8 IAGPQNSGKTSLLTLLTTD 26
>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain
{Bacteriophage T4 [TaxId: 10665]}
Length = 152
Score = 30.5 bits (67), Expect = 0.046
Identities = 7/36 (19%), Positives = 14/36 (38%), Gaps = 3/36 (8%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRD 56
+G G GK+T + + G +++ R
Sbjct: 7 TIGCPGSGKSTWAREFIAKN---PGFYNINRDDYRQ 39
>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF6 [TaxId: 9606]}
Length = 173
Score = 30.7 bits (68), Expect = 0.046
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 21 LLGPSGCGKTTLLSCIVN 38
+LG GKTT+L +
Sbjct: 17 MLGLDAAGKTTILYKLKL 34
>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1
ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 276
Score = 30.9 bits (70), Expect = 0.046
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 6/44 (13%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISLSA------RTVRDI 57
GL G +G GKT L+ ++N + HG S+ A R D+
Sbjct: 72 GLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDL 115
>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter
jejuni [TaxId: 197]}
Length = 161
Score = 30.7 bits (68), Expect = 0.047
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDH 44
+G G GK+TL + L L
Sbjct: 5 FIGFMGSGKSTLARALAKDLDLVF 28
>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo
sapiens) [TaxId: 9606]}
Length = 172
Score = 30.5 bits (67), Expect = 0.047
Identities = 8/27 (29%), Positives = 12/27 (44%), Gaps = 4/27 (14%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSI 47
L+G G GK+ + N H S+
Sbjct: 8 LIGEQGVGKS----TLANIFAGVHDSM 30
>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 221
Score = 30.5 bits (68), Expect = 0.048
Identities = 9/24 (37%), Positives = 13/24 (54%), Gaps = 4/24 (16%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDH 44
LLG GK+ IV ++R+ H
Sbjct: 11 LLGAGESGKS----TIVKQMRILH 30
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum
aerophilum [TaxId: 13773]}
Length = 276
Score = 30.9 bits (68), Expect = 0.049
Identities = 8/25 (32%), Positives = 10/25 (40%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHG 45
LLG G GKT L + +
Sbjct: 48 LLGRPGTGKTVTLRKLWELYKDKTT 72
>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 179
Score = 30.4 bits (67), Expect = 0.050
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 21 LLGPSGCGKTTLLSCIVN 38
++G S CGKT LL
Sbjct: 7 VVGDSQCGKTALLHVFAK 24
>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 166
Score = 30.3 bits (67), Expect = 0.053
Identities = 5/18 (27%), Positives = 10/18 (55%)
Query: 21 LLGPSGCGKTTLLSCIVN 38
++G G GK+ L ++
Sbjct: 8 VVGAGGVGKSALTIQLIQ 25
>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
{Escherichia coli [TaxId: 562]}
Length = 256
Score = 30.6 bits (69), Expect = 0.054
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSISLS 50
++GP G GKT L I ++ +IS S
Sbjct: 50 MVGPPGTGKTLLAKAIAGEAKVPFFTISGS 79
>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL3 [TaxId: 10090]}
Length = 176
Score = 30.3 bits (67), Expect = 0.054
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 21 LLGPSGCGKTTLLSCIVN 38
LLG GKTTLL + +
Sbjct: 21 LLGLDNAGKTTLLKQLAS 38
>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase
{Streptomyces venezuelae [TaxId: 54571]}
Length = 178
Score = 30.4 bits (67), Expect = 0.056
Identities = 8/40 (20%), Positives = 16/40 (40%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYM 60
L G S GK+ ++ C+ + L + + + M
Sbjct: 8 LNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKM 47
>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 169
Score = 30.4 bits (67), Expect = 0.056
Identities = 5/19 (26%), Positives = 9/19 (47%)
Query: 21 LLGPSGCGKTTLLSCIVNR 39
++G G GK+ L +
Sbjct: 9 VVGDGGVGKSALTIQFFQK 27
>d1d2na_ c.37.1.20 (A:) Hexamerization domain of
N-ethylmalemide-sensitive fusion (NSF) protein {Chinese
hamster (Cricetulus griseus) [TaxId: 10029]}
Length = 246
Score = 30.7 bits (68), Expect = 0.057
Identities = 9/39 (23%), Positives = 12/39 (30%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGY 59
L GP GKT L + I I + +
Sbjct: 45 LEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSET 83
>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 30.4 bits (67), Expect = 0.058
Identities = 5/19 (26%), Positives = 9/19 (47%)
Query: 21 LLGPSGCGKTTLLSCIVNR 39
++G G GK+ L +
Sbjct: 10 VVGGGGVGKSALTIQFIQS 28
>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Length = 443
Score = 30.5 bits (68), Expect = 0.061
Identities = 6/16 (37%), Positives = 11/16 (68%)
Query: 21 LLGPSGCGKTTLLSCI 36
++GP+G GKT + +
Sbjct: 54 MIGPTGVGKTEIARRL 69
>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle
domain {Bacillus subtilis [TaxId: 1423]}
Length = 185
Score = 30.3 bits (67), Expect = 0.065
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 20 GLLGPSGCGKTTLLSCIVNR 39
GL+G GK+TLLS + +
Sbjct: 5 GLVGFPSVGKSTLLSVVSSA 24
>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 30.0 bits (66), Expect = 0.066
Identities = 6/18 (33%), Positives = 10/18 (55%)
Query: 21 LLGPSGCGKTTLLSCIVN 38
+ G G GK++L+ V
Sbjct: 7 VFGAGGVGKSSLVLRFVK 24
>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId:
9606]}
Length = 186
Score = 30.2 bits (67), Expect = 0.066
Identities = 9/18 (50%), Positives = 10/18 (55%)
Query: 21 LLGPSGCGKTTLLSCIVN 38
LG SG GKTT L +
Sbjct: 10 ALGDSGVGKTTFLYRYTD 27
>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId:
9606]}
Length = 185
Score = 30.3 bits (67), Expect = 0.067
Identities = 8/33 (24%), Positives = 12/33 (36%), Gaps = 3/33 (9%)
Query: 6 ASSLNTVIFGVTAYGLLGPSGCGKTTLLSCIVN 38
A ++ ++G GKT LL N
Sbjct: 2 AHGPGALMLKCV---VVGDGAVGKTCLLMSYAN 31
>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 194
Score = 30.2 bits (67), Expect = 0.073
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 21 LLGPSGCGKTTLLSCIVN 38
L+G SG GK+ LL +
Sbjct: 11 LIGNSGVGKSCLLLRFSD 28
>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 167
Score = 30.0 bits (66), Expect = 0.075
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 21 LLGPSGCGKTTLLSCIVN 38
LLG +G GK++++ V
Sbjct: 9 LLGDTGVGKSSIMWRFVE 26
>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId:
9606]}
Length = 174
Score = 29.9 bits (66), Expect = 0.076
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 21 LLGPSGCGKTTLLSCIVN 38
++G +G GK+ LL +
Sbjct: 10 VIGNAGTGKSCLLHQFIE 27
>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 241
Score = 30.0 bits (66), Expect = 0.077
Identities = 6/62 (9%), Positives = 18/62 (29%), Gaps = 4/62 (6%)
Query: 23 GPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAEDSPSYLLE 82
G GK+T ++ + + V + +++ + +L+
Sbjct: 9 GNIAAGKSTFVNILKQLCE----DWEVVPEPVARWCNVQSTQDEFEELTMSQKNGGNVLQ 64
Query: 83 YY 84
Sbjct: 65 MM 66
>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top
tamarin (Saguinus oedipus) [TaxId: 9490]}
Length = 168
Score = 29.9 bits (66), Expect = 0.079
Identities = 5/18 (27%), Positives = 9/18 (50%)
Query: 21 LLGPSGCGKTTLLSCIVN 38
++G G GK+ L +
Sbjct: 9 MVGSGGVGKSALTLQFMY 26
>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 209
Score = 29.9 bits (66), Expect = 0.080
Identities = 6/19 (31%), Positives = 8/19 (42%)
Query: 23 GPSGCGKTTLLSCIVNRLR 41
G GK+T +V L
Sbjct: 10 GVDRAGKSTQSRKLVEALC 28
>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}
Length = 191
Score = 30.0 bits (66), Expect = 0.083
Identities = 6/18 (33%), Positives = 8/18 (44%)
Query: 21 LLGPSGCGKTTLLSCIVN 38
++G GKT LL
Sbjct: 8 VVGDGAVGKTCLLISYTT 25
>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth
inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 30.0 bits (66), Expect = 0.084
Identities = 5/18 (27%), Positives = 10/18 (55%)
Query: 21 LLGPSGCGKTTLLSCIVN 38
+ G +G GK+ L+ +
Sbjct: 7 IFGRAGVGKSALVVRFLT 24
>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 170
Score = 29.6 bits (65), Expect = 0.085
Identities = 6/18 (33%), Positives = 12/18 (66%)
Query: 21 LLGPSGCGKTTLLSCIVN 38
LLG + GK++++ V+
Sbjct: 8 LLGEAAVGKSSIVLRFVS 25
>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 208
Score = 30.0 bits (66), Expect = 0.086
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 23 GPSGCGKTTLLSCIVNRLR 41
G G GK TL+ + R
Sbjct: 7 GVDGAGKRTLVEKLSGAFR 25
>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId:
10090]}
Length = 165
Score = 29.6 bits (65), Expect = 0.089
Identities = 6/18 (33%), Positives = 8/18 (44%)
Query: 21 LLGPSGCGKTTLLSCIVN 38
++G S GKT L
Sbjct: 7 VIGDSNVGKTCLTYRFCA 24
>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId:
9606]}
Length = 175
Score = 29.8 bits (66), Expect = 0.089
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 21 LLGPSGCGKTTLLSCIVN 38
L+G SG GK+ LLS
Sbjct: 9 LIGDSGVGKSNLLSRFTR 26
>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 184
Score = 29.7 bits (65), Expect = 0.090
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 20 GLLGPSGCGKTTLLSCIVNR 39
G S GK+TL+ + +
Sbjct: 4 IFAGRSNVGKSTLIYRLTGK 23
>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 29.8 bits (66), Expect = 0.091
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 21 LLGPSGCGKTTLLSCIVN 38
L+G +G GKT L+
Sbjct: 10 LIGNAGVGKTCLVRRFTQ 27
>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli
[TaxId: 562]}
Length = 210
Score = 29.9 bits (66), Expect = 0.093
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 23 GPSGCGKTTLLSCIVNRLR 41
G G GKTT + +V L
Sbjct: 9 GLEGAGKTTARNVVVETLE 27
>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 166
Score = 29.7 bits (66), Expect = 0.095
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 21 LLGPSGCGKTTLLSCIVN 38
L+G SG GK+ LL V
Sbjct: 7 LIGDSGVGKSCLLVRFVE 24
>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 175
Score = 29.6 bits (65), Expect = 0.096
Identities = 5/19 (26%), Positives = 11/19 (57%)
Query: 21 LLGPSGCGKTTLLSCIVNR 39
+LG + GK++L+ +
Sbjct: 10 VLGDARSGKSSLIHRFLTG 28
>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium
extorquens [TaxId: 408]}
Length = 323
Score = 29.9 bits (66), Expect = 0.098
Identities = 9/46 (19%), Positives = 19/46 (41%), Gaps = 3/46 (6%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLR---LDHGSISLSARTVRDIGYMPQ 62
G+ G G GK+T + + + L +++ + R G +
Sbjct: 55 GITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILG 100
>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast
(Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}
Length = 182
Score = 29.6 bits (65), Expect = 0.098
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 21 LLGPSGCGKTTLLSCIVN 38
+LG G GKTT+L +
Sbjct: 22 ILGLDGAGKTTILYRLQI 39
>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId:
9606]}
Length = 170
Score = 29.5 bits (65), Expect = 0.099
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 21 LLGPSGCGKTTLLSCIVN 38
L+G SG GKT LL +
Sbjct: 11 LVGDSGVGKTCLLVRFKD 28
>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 169
Score = 29.5 bits (65), Expect = 0.099
Identities = 6/18 (33%), Positives = 10/18 (55%)
Query: 21 LLGPSGCGKTTLLSCIVN 38
++G S GKT+ L +
Sbjct: 10 IIGNSSVGKTSFLFRYAD 27
>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 29.6 bits (65), Expect = 0.10
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 21 LLGPSGCGKTTLLSCIVN 38
LLG S GK++L+ V
Sbjct: 11 LLGESAVGKSSLVLRFVK 28
>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle
domain {Thermus thermophilus [TaxId: 274]}
Length = 180
Score = 29.6 bits (65), Expect = 0.10
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 20 GLLGPSGCGKTTLLSCIVNR 39
GL+G GK++LL+ +
Sbjct: 5 GLVGYPNAGKSSLLAAMTRA 24
>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 29.6 bits (65), Expect = 0.10
Identities = 7/18 (38%), Positives = 9/18 (50%)
Query: 21 LLGPSGCGKTTLLSCIVN 38
+LG G GK+ L V
Sbjct: 8 VLGSGGVGKSALTVQFVQ 25
>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase
TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}
Length = 161
Score = 29.3 bits (64), Expect = 0.10
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 20 GLLGPSGCGKTTLLSCIVNR 39
+ G GK++LL+ + R
Sbjct: 5 VIAGRPNAGKSSLLNALAGR 24
>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId:
9606]}
Length = 164
Score = 29.5 bits (65), Expect = 0.11
Identities = 6/18 (33%), Positives = 10/18 (55%)
Query: 21 LLGPSGCGKTTLLSCIVN 38
LG GKT+L++ +
Sbjct: 5 FLGEQSVGKTSLITRFMY 22
>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId:
9606]}
Length = 177
Score = 29.4 bits (65), Expect = 0.11
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 21 LLGPSGCGKTTLLSCIVN 38
++G SG GK++LL +
Sbjct: 12 IIGESGVGKSSLLLRFTD 29
>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId:
9606]}
Length = 166
Score = 29.5 bits (65), Expect = 0.11
Identities = 6/18 (33%), Positives = 9/18 (50%)
Query: 21 LLGPSGCGKTTLLSCIVN 38
++G G GK+ LL
Sbjct: 9 IIGDMGVGKSCLLHQFTE 26
>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 29.6 bits (65), Expect = 0.11
Identities = 6/18 (33%), Positives = 8/18 (44%)
Query: 21 LLGPSGCGKTTLLSCIVN 38
++G GKT LL
Sbjct: 10 VVGDGAVGKTCLLISYTT 27
>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 214
Score = 29.5 bits (65), Expect = 0.12
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 23 GPSGCGKTTLLSCIVNRLR 41
G GKTT + + +L+
Sbjct: 10 GLDRTGKTTQCNILYKKLQ 28
>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 173
Score = 29.3 bits (65), Expect = 0.13
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 21 LLGPSGCGKTTLLSCIVN 38
L+G SG GKT +L
Sbjct: 11 LIGDSGVGKTCVLFRFSE 28
>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 197
Score = 29.2 bits (64), Expect = 0.13
Identities = 15/83 (18%), Positives = 23/83 (27%)
Query: 23 GPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAEDSPSYLLE 82
G G GKTT L+ + G + + A SY+
Sbjct: 16 GNIGSGKTTYLNHFEKYKNDICLLTEPVEKWRNVNGVNLLELMYKDPKKWAMPFQSYVTL 75
Query: 83 YYNCSTLEDVFLYLCEQDQILFS 105
S L ++ +FS
Sbjct: 76 TMLQSHTAPTNKKLKIMERSIFS 98
>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 179
Score = 29.3 bits (64), Expect = 0.13
Identities = 6/20 (30%), Positives = 13/20 (65%)
Query: 20 GLLGPSGCGKTTLLSCIVNR 39
++G GK+TLL+ ++ +
Sbjct: 9 AIVGRPNVGKSTLLNKLLGQ 28
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 252
Score = 29.4 bits (64), Expect = 0.13
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 18 AYGLLGPSGCGKTTLLSCIVNRL 40
L GP+G GK T ++ +
Sbjct: 35 HLLLYGPNGTGKKTRCMALLESI 57
>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 29.1 bits (64), Expect = 0.14
Identities = 7/18 (38%), Positives = 9/18 (50%)
Query: 21 LLGPSGCGKTTLLSCIVN 38
+LG G GK+ L V
Sbjct: 8 VLGSGGVGKSALTVQFVT 25
>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus
thermophilus [TaxId: 274]}
Length = 178
Score = 29.3 bits (64), Expect = 0.14
Identities = 6/20 (30%), Positives = 12/20 (60%)
Query: 20 GLLGPSGCGKTTLLSCIVNR 39
++G GK+TLL+ ++
Sbjct: 9 AIVGKPNVGKSTLLNNLLGV 28
>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis
[TaxId: 1423]}
Length = 195
Score = 29.3 bits (64), Expect = 0.14
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRL 42
L G S GK++ ++ ++NR L
Sbjct: 27 ALAGRSNVGKSSFINSLINRKNL 49
>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase
(APS kinase) {Human (Homo sapiens) [TaxId: 9606]}
Length = 195
Score = 29.3 bits (64), Expect = 0.14
Identities = 9/24 (37%), Positives = 11/24 (45%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDH 44
L G SG GKTT+ + L
Sbjct: 24 LTGLSGAGKTTVSMALEEYLVCHG 47
>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}
Length = 174
Score = 29.2 bits (64), Expect = 0.14
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 21 LLGPSGCGKTTLLSCIVN 38
LLG G GK++L++ V
Sbjct: 11 LLGDGGVGKSSLMNRYVT 28
>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 171
Score = 29.0 bits (63), Expect = 0.15
Identities = 6/20 (30%), Positives = 12/20 (60%)
Query: 20 GLLGPSGCGKTTLLSCIVNR 39
++G GK+TL + +V +
Sbjct: 4 LIVGRPNVGKSTLFNKLVKK 23
>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 29.1 bits (64), Expect = 0.15
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 21 LLGPSGCGKTTLLSCIVN 38
++G +G GK+ LL +
Sbjct: 8 IIGDTGVGKSCLLLQFTD 25
>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId:
9606]}
Length = 167
Score = 29.1 bits (64), Expect = 0.15
Identities = 7/18 (38%), Positives = 9/18 (50%)
Query: 21 LLGPSGCGKTTLLSCIVN 38
LLG GKT+L+
Sbjct: 8 LLGEGCVGKTSLVLRYCE 25
>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase
III, N-domain {Escherichia coli [TaxId: 562]}
Length = 207
Score = 28.9 bits (63), Expect = 0.20
Identities = 4/21 (19%), Positives = 7/21 (33%)
Query: 18 AYGLLGPSGCGKTTLLSCIVN 38
A + G G L+ +
Sbjct: 26 ALLIQALPGMGDDALIYALSR 46
>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 400
Score = 29.0 bits (64), Expect = 0.21
Identities = 5/39 (12%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSI-SLSARTVRDI 57
+ G +G GK++ ++ + + G+ + +
Sbjct: 60 AVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMER 98
>g1xew.1 c.37.1.12 (X:,Y:) Smc head domain {Pyrococcus furiosus
[TaxId: 2261]}
Length = 329
Score = 28.8 bits (63), Expect = 0.23
Identities = 8/22 (36%), Positives = 13/22 (59%), Gaps = 2/22 (9%)
Query: 15 GVTAYGLLGPSGCGKTTLLSCI 36
G TA ++G +G GK+ + I
Sbjct: 27 GFTA--IVGANGSGKSNIGDAI 46
>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 241
Score = 28.5 bits (62), Expect = 0.26
Identities = 4/19 (21%), Positives = 7/19 (36%)
Query: 23 GPSGCGKTTLLSCIVNRLR 41
G GK+T + +
Sbjct: 9 GNIAVGKSTFVKLLTKTYP 27
>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima
[TaxId: 2336]}
Length = 308
Score = 28.5 bits (62), Expect = 0.29
Identities = 9/22 (40%), Positives = 15/22 (68%), Gaps = 2/22 (9%)
Query: 15 GVTAYGLLGPSGCGKTTLLSCI 36
VTA ++GP+G GK+ ++ I
Sbjct: 25 RVTA--IVGPNGSGKSNIIDAI 44
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus
thermophilus [TaxId: 274]}
Length = 387
Score = 28.5 bits (63), Expect = 0.32
Identities = 18/96 (18%), Positives = 36/96 (37%), Gaps = 8/96 (8%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGA-LLAEDSPSY 79
L+G G GKT ++ + R+ L + + + Q+G + +GA E
Sbjct: 48 LIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSL----QMGSLLAGAKYRGEFEERL 103
Query: 80 LLEYYNCSTLEDVFLYLCEQDQILFSLVGSESAFGG 115
+ + ++ L ++VG+ A G
Sbjct: 104 KAVIQEVVQSQGEVILFIDE---LHTVVGAGKAEGA 136
>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3'
phosphatase, C-terminal domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 172
Score = 27.9 bits (61), Expect = 0.35
Identities = 6/26 (23%), Positives = 11/26 (42%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGS 46
+G G GK+T + + H +
Sbjct: 19 AVGFPGAGKSTFIQEHLVSAGYVHVN 44
>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 186
Score = 28.1 bits (61), Expect = 0.35
Identities = 7/20 (35%), Positives = 13/20 (65%)
Query: 20 GLLGPSGCGKTTLLSCIVNR 39
++G GK+TL + I+N+
Sbjct: 12 AIVGRPNVGKSTLFNAILNK 31
>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4
[TaxId: 10331]}
Length = 333
Score = 28.4 bits (63), Expect = 0.36
Identities = 5/27 (18%), Positives = 10/27 (37%)
Query: 23 GPSGCGKTTLLSCIVNRLRLDHGSISL 49
G G GK+T + + ++
Sbjct: 13 GVYGIGKSTTGRVMASAASGGSPTLYF 39
>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga
maritima [TaxId: 2336]}
Length = 160
Score = 28.0 bits (61), Expect = 0.37
Identities = 17/85 (20%), Positives = 36/85 (42%), Gaps = 7/85 (8%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV--RDIGYMPQVGLMRSGALLAEDSPS 78
++G GK+TLL+ ++N R I + R V +I + + A + ++
Sbjct: 5 IVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETND 64
Query: 79 YLLEYYNCSTLE-----DVFLYLCE 98
+ TL+ D+ L++ +
Sbjct: 65 LVERLGIERTLQEIEKADIVLFVLD 89
>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli
[TaxId: 562]}
Length = 308
Score = 28.1 bits (62), Expect = 0.38
Identities = 5/31 (16%), Positives = 9/31 (29%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISLS 50
+ G GK+T + L +
Sbjct: 84 SIAGSVAVGKSTTARVLQALLSRWPEHRRVE 114
>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955
{Pyrococcus abyssi [TaxId: 29292]}
Length = 244
Score = 28.0 bits (61), Expect = 0.38
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDH 44
+G +G GKTTL L ++
Sbjct: 4 VFVGTAGSGKTTLTGEFGRYLEDNY 28
>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein
TrwB {Escherichia coli [TaxId: 562]}
Length = 433
Score = 28.4 bits (62), Expect = 0.38
Identities = 7/27 (25%), Positives = 12/27 (44%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSI 47
+ G +G GK+ LL + L +
Sbjct: 55 VNGATGTGKSVLLRELAYTGLLRGDRM 81
>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 237
Score = 28.1 bits (61), Expect = 0.41
Identities = 7/22 (31%), Positives = 10/22 (45%)
Query: 19 YGLLGPSGCGKTTLLSCIVNRL 40
GP G GKT+ + + L
Sbjct: 36 MLFYGPPGTGKTSTILALTKEL 57
>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia
coli [TaxId: 562]}
Length = 222
Score = 27.7 bits (60), Expect = 0.46
Identities = 8/22 (36%), Positives = 12/22 (54%), Gaps = 2/22 (9%)
Query: 15 GVTAYGLLGPSGCGKTTLLSCI 36
VT L G +G GK+T ++
Sbjct: 25 LVTT--LSGGNGAGKSTTMAAF 44
>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli
[TaxId: 562]}
Length = 188
Score = 27.4 bits (59), Expect = 0.57
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 20 GLLGPSGCGKTTLLSCIVN 38
G S GK++ L+ + N
Sbjct: 20 AFAGRSNAGKSSALNTLTN 38
>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Length = 309
Score = 27.5 bits (60), Expect = 0.65
Identities = 6/12 (50%), Positives = 10/12 (83%)
Query: 21 LLGPSGCGKTTL 32
++GP+G GKT +
Sbjct: 54 MIGPTGVGKTEI 65
>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase,
BchI {Rhodobacter capsulatus [TaxId: 1061]}
Length = 333
Score = 27.6 bits (60), Expect = 0.68
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 21 LLGPSGCGKTTLLSCIVNRL 40
+ G G GK+T + + L
Sbjct: 33 VFGDRGTGKSTAVRALAALL 52
>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34
{Garden pea (Pisum sativum) [TaxId: 3888]}
Length = 257
Score = 27.5 bits (60), Expect = 0.71
Identities = 12/115 (10%), Positives = 34/115 (29%), Gaps = 6/115 (5%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAEDSPSYL 80
++G G GK++ ++ I+ + + + Y+
Sbjct: 37 VMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYI 96
Query: 81 LEYYNCSTLEDVFLYLCEQD--QILFSLVGSESAFGGQQRRVSFAVSLIHDPKIL 133
+ L + +L ++ +L+ + V+ A++ I
Sbjct: 97 NDMA----LNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIW 147
>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus
[TaxId: 10335]}
Length = 331
Score = 27.3 bits (60), Expect = 0.72
Identities = 6/19 (31%), Positives = 8/19 (42%)
Query: 23 GPSGCGKTTLLSCIVNRLR 41
G G GKTT ++
Sbjct: 12 GAYGIGKTTAAEEFLHHFA 30
>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus
[TaxId: 274]}
Length = 191
Score = 26.8 bits (58), Expect = 1.0
Identities = 6/20 (30%), Positives = 12/20 (60%)
Query: 20 GLLGPSGCGKTTLLSCIVNR 39
G+ G G GK+T+ + + +
Sbjct: 7 GITGNIGSGKSTVAALLRSW 26
>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP)
carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus
thermophilus [TaxId: 274]}
Length = 318
Score = 26.9 bits (59), Expect = 1.1
Identities = 8/12 (66%), Positives = 8/12 (66%)
Query: 21 LLGPSGCGKTTL 32
G SG GKTTL
Sbjct: 19 FFGLSGTGKTTL 30
>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP)
carboxykinase (ATP-oxaloacetate carboxy-lyase)
{Escherichia coli [TaxId: 562]}
Length = 313
Score = 26.9 bits (59), Expect = 1.1
Identities = 8/12 (66%), Positives = 8/12 (66%)
Query: 21 LLGPSGCGKTTL 32
G SG GKTTL
Sbjct: 19 FFGLSGTGKTTL 30
>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type
1, different strains [TaxId: 10298]}
Length = 329
Score = 26.5 bits (58), Expect = 1.2
Identities = 8/19 (42%), Positives = 9/19 (47%)
Query: 23 GPSGCGKTTLLSCIVNRLR 41
GP G GKTT +V
Sbjct: 11 GPHGMGKTTTTQLLVALGS 29
>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence
recognition protein Ffh {Thermus aquaticus [TaxId:
271]}
Length = 207
Score = 26.6 bits (58), Expect = 1.3
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSISLSA 51
L+G G GKTT + + + L A
Sbjct: 15 LVGLQGSGKTTTAAKLALYYKGKGRRPLLVA 45
>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS
kinase) {Fungus (Penicillium chrysogenum) [TaxId:
5076]}
Length = 208
Score = 26.3 bits (57), Expect = 1.3
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDH 44
L G S GK+TL + ++L D
Sbjct: 29 LTGLSASGKSTLAVELEHQLVRDR 52
>d1bifa1 c.37.1.7 (A:37-249)
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase,
kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 213
Score = 26.5 bits (57), Expect = 1.3
Identities = 6/36 (16%), Positives = 13/36 (36%), Gaps = 1/36 (2%)
Query: 21 LLGPSGCGKTTLLSCIVNRLR-LDHGSISLSARTVR 55
++G GKT + + L + + + R
Sbjct: 7 MVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYR 42
>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal
recognition particle receptor FtsY {Escherichia coli
[TaxId: 562]}
Length = 211
Score = 26.6 bits (58), Expect = 1.3
Identities = 9/38 (23%), Positives = 17/38 (44%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIG 58
++G +G GKTT + + + S+ L+A
Sbjct: 14 MVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAA 51
>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus
influenzae [TaxId: 727]}
Length = 158
Score = 26.2 bits (57), Expect = 1.3
Identities = 10/41 (24%), Positives = 15/41 (36%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMP 61
L G G GKTTL ++ + S + V +
Sbjct: 38 LNGDLGAGKTTLTRGMLQGIGHQGNVKSPTYTLVEEYNIAG 78
>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 258
Score = 26.5 bits (57), Expect = 1.4
Identities = 10/40 (25%), Positives = 14/40 (35%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYM 60
L GP G GKT + + N I+ + G
Sbjct: 43 LYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGES 82
>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal
recognition particle receptor FtsY {Thermus aquaticus
[TaxId: 271]}
Length = 207
Score = 26.2 bits (57), Expect = 1.4
Identities = 7/31 (22%), Positives = 15/31 (48%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSISLSA 51
++G +G GKTT ++ + + + A
Sbjct: 11 VVGVNGVGKTTTIAKLGRYYQNLGKKVMFCA 41
>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP)
carboxykinase (ATP-oxaloacetate carboxy-lyase)
{Trypanosoma cruzi [TaxId: 5693]}
Length = 323
Score = 26.5 bits (58), Expect = 1.5
Identities = 8/12 (66%), Positives = 8/12 (66%)
Query: 21 LLGPSGCGKTTL 32
G SG GKTTL
Sbjct: 19 FFGLSGTGKTTL 30
>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus
influenzae [TaxId: 727]}
Length = 205
Score = 26.0 bits (56), Expect = 1.6
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 20 GLLGPSGCGKTTLLSCIVNR 39
GL G G GKTT+ + +
Sbjct: 6 GLTGGIGSGKTTIANLFTDL 25
>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase
{Bacteriophage T4 [TaxId: 10665]}
Length = 241
Score = 26.0 bits (56), Expect = 1.6
Identities = 6/21 (28%), Positives = 8/21 (38%)
Query: 20 GLLGPSGCGKTTLLSCIVNRL 40
L G GK T I++
Sbjct: 5 FLSGVKRSGKDTTADFIMSNY 25
>d1kgsa1 a.4.6.1 (A:124-225) PhoB {Thermotoga maritima [TaxId:
2336]}
Length = 102
Score = 25.5 bits (55), Expect = 1.6
Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 2/40 (5%)
Query: 23 GPSGCGKTTLLSCIVNRLR--LDHGSISLSARTVRDIGYM 60
+ +L + LR +D G TVR IGY+
Sbjct: 59 SFDDEVFSDVLRSHIKNLRKKVDKGFKKKIIHTVRGIGYV 98
>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB
{Thermotoga maritima [TaxId: 2336]}
Length = 238
Score = 26.1 bits (56), Expect = 1.8
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 18 AYGLLGPSGCGKTTLLSCIVNRLRLDHGSIS 48
L GP G GKTTL I + L+ + S
Sbjct: 37 HVLLAGPPGLGKTTLAHIIASELQTNIHVTS 67
>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal
(G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}
Length = 267
Score = 26.0 bits (56), Expect = 1.9
Identities = 11/41 (26%), Positives = 14/41 (34%), Gaps = 4/41 (9%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYM 60
L+G +G GKTTL L G+ R
Sbjct: 6 ALVGHAGSGKTTL----TEALLYKTGAKERRGRVEEGTTTT 42
>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal
recognition particle receptor FtsY {Thermotoga maritima
[TaxId: 2336]}
Length = 213
Score = 25.9 bits (56), Expect = 2.0
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSISL 49
++G +G GKTT + + S+ L
Sbjct: 16 VVGVNGTGKTTSCGKLAKMFVDEGKSVVL 44
>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic
domain {Archaeon Methanococcus voltae [TaxId: 2188]}
Length = 258
Score = 25.8 bits (55), Expect = 2.1
Identities = 6/25 (24%), Positives = 9/25 (36%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHG 45
G G GKT ++ L+
Sbjct: 39 FAGVFGSGKTQIMHQSCVNLQNPEF 63
>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1
ATP synthase {Cow (Bos taurus) [TaxId: 9913]}
Length = 285
Score = 25.9 bits (57), Expect = 2.1
Identities = 24/123 (19%), Positives = 42/123 (34%), Gaps = 23/123 (18%)
Query: 20 GLLGPSGCGKTTLL-SCIVNRLRLDHGS------------ISLSARTVRD-IGYMPQVGL 65
++G GKT++ I+N+ R + G+ I TV + +
Sbjct: 72 LIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADA 131
Query: 66 MRSGAL---LAEDSPS--YLLEYYNCSTLEDVFLYLCEQDQILFSLVGSESAFGGQQRRV 120
M+ + A D+ YL Y CS E Y + + + S R++
Sbjct: 132 MKYTIVVSATASDAAPLQYLAPYSGCSMGE----YFRDNGKHALIIYDDLSKQAVAYRQM 187
Query: 121 SFA 123
S
Sbjct: 188 SLL 190
>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic
domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 254
Score = 25.8 bits (55), Expect = 2.5
Identities = 8/34 (23%), Positives = 14/34 (41%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV 54
+ G G GKT L + ++L L+ +
Sbjct: 41 VFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVI 74
>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain
{Staphylococcus xylosus [TaxId: 1288]}
Length = 169
Score = 25.3 bits (55), Expect = 2.5
Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Query: 12 VIFGVTAYGLLGPSGCGKTTL-LSCIVNRLRL 42
++GV + G SG GK+ L I RL
Sbjct: 12 DVYGV-GVLITGDSGIGKSETALELIKRGHRL 42
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human
hepatitis C virus (HCV), different isolates [TaxId:
11103]}
Length = 136
Score = 25.2 bits (54), Expect = 2.6
Identities = 6/13 (46%), Positives = 9/13 (69%)
Query: 21 LLGPSGCGKTTLL 33
L P+G GK+T +
Sbjct: 13 LHAPTGSGKSTKV 25
>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2),
N-terminal (G) domain {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 341
Score = 25.5 bits (55), Expect = 2.8
Identities = 10/44 (22%), Positives = 15/44 (34%), Gaps = 5/44 (11%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLRLDHGSISLS-ARTVRDIGYMPQ 62
++ GK+TL + L G IS + A R
Sbjct: 21 SVIAHVDHGKSTL----TDSLVQRAGIISAAKAGEARFTDTRKD 60
>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 242
Score = 25.5 bits (54), Expect = 3.1
Identities = 4/17 (23%), Positives = 7/17 (41%)
Query: 21 LLGPSGCGKTTLLSCIV 37
+ G GKT + +
Sbjct: 28 MFGEFRTGKTQICHTLA 44
>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain
{Mycoplasma pneumoniae [TaxId: 2104]}
Length = 177
Score = 25.3 bits (55), Expect = 3.2
Identities = 10/28 (35%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 12 VIFGVTAYGLLGPSGCGKTTLLSCIVNR 39
+FGV L G SG GK+ ++N+
Sbjct: 12 EVFGV-GVLLTGRSGIGKSECALDLINK 38
>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 222
Score = 25.2 bits (54), Expect = 3.4
Identities = 11/18 (61%), Positives = 12/18 (66%)
Query: 21 LLGPSGCGKTTLLSCIVN 38
L G G GKTTLL I+N
Sbjct: 8 LTGFLGAGKTTLLRHILN 25
>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence
recognition protein Ffh {Archaeon Acidianus ambivalens
[TaxId: 2283]}
Length = 211
Score = 25.1 bits (54), Expect = 3.4
Identities = 7/29 (24%), Positives = 11/29 (37%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSISL 49
L+G G GK T + + + L
Sbjct: 17 LVGVQGTGKATTAGKLAYFYKKKGFKVGL 45
>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain
{Caenorhabditis elegans [TaxId: 6239]}
Length = 277
Score = 25.2 bits (54), Expect = 3.5
Identities = 6/22 (27%), Positives = 12/22 (54%)
Query: 20 GLLGPSGCGKTTLLSCIVNRLR 41
L G +G GK+ + S +++
Sbjct: 48 FLHGRAGSGKSVIASQALSKSD 69
>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal
domain {Fission yeast (Schizosaccharomyces pombe)
[TaxId: 4896]}
Length = 296
Score = 25.2 bits (54), Expect = 3.6
Identities = 6/19 (31%), Positives = 9/19 (47%)
Query: 20 GLLGPSGCGKTTLLSCIVN 38
G++G GK+T I
Sbjct: 14 GIVGMPNVGKSTFFRAITK 32
>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic
domain {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 251
Score = 25.1 bits (53), Expect = 3.7
Identities = 5/34 (14%), Positives = 11/34 (32%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV 54
L G GK+ L + ++ + +
Sbjct: 39 LFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCL 72
>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 25.3 bits (54), Expect = 3.7
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 21 LLGPSGCGKTTLLSCIVNRL 40
G +G GKT L+S V
Sbjct: 31 ATGATGTGKTLLVSRFVENA 50
>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain
{Lactobacillus casei [TaxId: 1582]}
Length = 176
Score = 24.9 bits (54), Expect = 3.7
Identities = 9/28 (32%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 12 VIFGVTAYGLLGPSGCGKTTLLSCIVNR 39
I+G+ + G SG GK+ +V R
Sbjct: 11 DIYGL-GVLITGDSGVGKSETALELVQR 37
>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId:
161736]}
Length = 321
Score = 25.0 bits (54), Expect = 3.9
Identities = 6/34 (17%), Positives = 11/34 (32%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTV 54
+ G GKT L+ + L ++
Sbjct: 128 VTGKGNSGKTPLVHALGEALGGKDKYATVRFGEP 161
>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA
{Escherichia coli [TaxId: 562]}
Length = 274
Score = 25.0 bits (53), Expect = 3.9
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 21 LLGPSGCGKTTLLSCI 36
L+ P G GK+ L +
Sbjct: 34 LVSPGGAGKSMLALQL 49
>d1w36b1 c.37.1.19 (B:1-485) Exodeoxyribonuclease V beta chain
(RecB), N-terminal domain {Escherichia coli [TaxId:
562]}
Length = 485
Score = 25.1 bits (53), Expect = 4.2
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 26 GCGKTTLLSCIVNRLRLDHGSISLSARTVR 55
G GKT ++ + RL L G + R +
Sbjct: 26 GTGKTFTIAALYLRLLLGLGGSAAFPRPLT 55
>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal
domain {Ureaplasma urealyticum [TaxId: 2130]}
Length = 139
Score = 24.7 bits (53), Expect = 4.3
Identities = 15/82 (18%), Positives = 28/82 (34%), Gaps = 2/82 (2%)
Query: 22 LGPSGCGKTTLLSCIVNRLRLDHGSISL--SARTVRDIGYMPQVGLMRSGALLAEDSPSY 79
GP GKT L ++RL + R I + ++ E +P
Sbjct: 8 TGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSRTGTSLPSVEVESAPEI 67
Query: 80 LLEYYNCSTLEDVFLYLCEQDQ 101
L + S ++ + ++ Q
Sbjct: 68 LNYIMSNSFNDETKVIGIDEVQ 89
>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal
domain {Bacillus subtilis [TaxId: 1423]}
Length = 231
Score = 24.7 bits (53), Expect = 4.6
Identities = 19/84 (22%), Positives = 29/84 (34%), Gaps = 5/84 (5%)
Query: 21 LLGPSGCGKTTLLSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAEDSP--- 77
G SG GK++LL+ I L L IS + ++ G + D+P
Sbjct: 102 FAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSGGLVA--DTPGFS 159
Query: 78 SYLLEYYNCSTLEDVFLYLCEQDQ 101
S L F + E+
Sbjct: 160 SLEFTDIEEEELGYTFPDIREKSS 183
>d1khba1 c.91.1.1 (A:260-622) Cytosolic phosphoenolpyruvate
carboxykinase (GTP-hydrolyzing) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 363
Score = 24.8 bits (54), Expect = 5.0
Identities = 7/9 (77%), Positives = 7/9 (77%)
Query: 24 PSGCGKTTL 32
PS CGKT L
Sbjct: 26 PSACGKTNL 34
>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15
homolog {Human (Homo sapiens) [TaxId: 9606]}
Length = 258
Score = 24.7 bits (52), Expect = 5.6
Identities = 13/94 (13%), Positives = 21/94 (22%), Gaps = 1/94 (1%)
Query: 21 LLGPSGCGKTTL-LSCIVNRLRLDHGSISLSARTVRDIGYMPQVGLMRSGALLAEDSPSY 79
G GKT L + V G D + +R A
Sbjct: 42 AFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDA 101
Query: 80 LLEYYNCSTLEDVFLYLCEQDQILFSLVGSESAF 113
+L+ + + D + F
Sbjct: 102 VLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIF 135
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus
type 2 [TaxId: 11060]}
Length = 305
Score = 24.1 bits (51), Expect = 7.5
Identities = 4/11 (36%), Positives = 5/11 (45%)
Query: 21 LLGPSGCGKTT 31
+ G GKT
Sbjct: 14 MDLHPGAGKTK 24
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.139 0.400
Gapped
Lambda K H
0.267 0.0435 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 506,511
Number of extensions: 20524
Number of successful extensions: 310
Number of sequences better than 10.0: 1
Number of HSP's gapped: 297
Number of HSP's successfully gapped: 228
Length of query: 149
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 72
Effective length of database: 1,350,386
Effective search space: 97227792
Effective search space used: 97227792
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.4 bits)