BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10770
(253 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2QUH|A Chain A, Crystal Structures Of Human Tryptophanyl-Trna Synthetase
In Complex With Trp
pdb|2QUI|A Chain A, Crystal Structures Of Human Tryptophanyl-Trna Synthetase
In Complex With Tryptophanamide And Atp
pdb|2QUI|B Chain B, Crystal Structures Of Human Tryptophanyl-Trna Synthetase
In Complex With Tryptophanamide And Atp
pdb|2QUJ|A Chain A, Crystal Structures Of Human Tryptophanyl-Trna Synthetase
In Complex With Trpamp
pdb|2QUK|A Chain A, Crystal Structures Of Human Tryptophanyl-Trna Synthetase
In Complex With Atp(Putative)
pdb|2QUH|B Chain B, Crystal Structures Of Human Tryptophanyl-Trna Synthetase
In Complex With Trp
Length = 477
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 23/39 (58%)
Query: 154 SGKVKSFMLDVLCPLITESDILSHELLDIILMNIVDPQK 192
+G++K +++VL PLI E E+ D I+ + P+K
Sbjct: 427 TGELKKALIEVLQPLIAEHQARRKEVTDEIVKEFMTPRK 465
>pdb|1O5T|A Chain A, Crystal Structure Of The Aminoacylation Catalytic Fragment
Of Human Tryptophanyl-Trna Synthetase
Length = 378
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 23/39 (58%)
Query: 154 SGKVKSFMLDVLCPLITESDILSHELLDIILMNIVDPQK 192
+G++K +++VL PLI E E+ D I+ + P+K
Sbjct: 334 TGELKKALIEVLQPLIAEHQARRKEVTDEIVKEFMTPRK 372
>pdb|2QUJ|B Chain B, Crystal Structures Of Human Tryptophanyl-Trna Synthetase
In Complex With Trpamp
Length = 384
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 23/39 (58%)
Query: 154 SGKVKSFMLDVLCPLITESDILSHELLDIILMNIVDPQK 192
+G++K +++VL PLI E E+ D I+ + P+K
Sbjct: 334 TGELKKALIEVLQPLIAEHQARRKEVTDEIVKEFMTPRK 372
>pdb|2AKE|A Chain A, Structure Of Human Tryptophanyl-Trna Synthetase In Complex
With Trna(Trp)
pdb|2DR2|A Chain A, Structure Of Human Tryptophanyl-trna Synthetase In Complex
With Trna(trp)
Length = 384
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 23/39 (58%)
Query: 154 SGKVKSFMLDVLCPLITESDILSHELLDIILMNIVDPQK 192
+G++K +++VL PLI E E+ D I+ + P+K
Sbjct: 334 TGELKKALIEVLQPLIAEHQARRKEVTDEIVKEFMTPRK 372
>pdb|1ULH|A Chain A, A Short Peptide Insertion Crucial For Angiostatic Activity
Of Human Tryptophanyl-Trna Synthetase
pdb|1ULH|B Chain B, A Short Peptide Insertion Crucial For Angiostatic Activity
Of Human Tryptophanyl-Trna Synthetase
Length = 390
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 23/39 (58%)
Query: 154 SGKVKSFMLDVLCPLITESDILSHELLDIILMNIVDPQK 192
+G++K +++VL PLI E E+ D I+ + P+K
Sbjct: 346 TGELKKALIEVLQPLIAEHQARRKEVTDEIVKEFMTPRK 384
>pdb|1R6U|A Chain A, Crystal Structure Of An Active Fragment Of Human
Tryptophanyl-Trna Synthetase With Cytokine Activity
pdb|1R6U|B Chain B, Crystal Structure Of An Active Fragment Of Human
Tryptophanyl-Trna Synthetase With Cytokine Activity
Length = 437
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 154 SGKVKSFMLDVLCPLITESDILSHELLDIILMNIVDPQK 192
+G++K +++VL PLI E E+ D I+ P+K
Sbjct: 380 TGELKKALIEVLQPLIAEHQARRKEVTDEIVKEFXTPRK 418
>pdb|1R6T|A Chain A, Crystal Structure Of Human Tryptophanyl-Trna Synthetase
pdb|1R6T|B Chain B, Crystal Structure Of Human Tryptophanyl-Trna Synthetase
Length = 477
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 154 SGKVKSFMLDVLCPLITESDILSHELLDIILMNIVDPQK 192
+G++K +++VL PLI E E+ D I+ P+K
Sbjct: 427 TGELKKALIEVLQPLIAEHQARRKEVTDEIVKEFXTPRK 465
>pdb|3K8G|A Chain A, Structure Of Crystal Form I Of Tp0453
pdb|3K8G|B Chain B, Structure Of Crystal Form I Of Tp0453
pdb|3K8H|A Chain A, Structure Of Crystal Form I Of Tp0453
pdb|3K8H|B Chain B, Structure Of Crystal Form I Of Tp0453
pdb|3K8I|A Chain A, Structure Of Crystal Form Iv Of Tp0453
pdb|3K8J|A Chain A, Structure Of Crystal Form Iii Of Tp0453
Length = 262
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 11/77 (14%)
Query: 177 HELLDIILMNIVDPQKTQRKNAYLLAKELIVK-TNDTLEPYIQN----LTRLANAVFPNL 231
E + +L +V+P + Q + KE + T+ T+ YI+N +T+L N FP L
Sbjct: 127 RERMSKMLSRLVNPDRPQLPPRF--EKECTSEGTSQTVALYIKNGGHFITKLLN--FPQL 182
Query: 232 GDIAPLGAMEIFMGAMK 248
PLGAME+++ A +
Sbjct: 183 N--LPLGAMELYLTARR 197
>pdb|3VX6|A Chain A, Crystal Structure Of Kluyveromyces Marxianus Atg7ntd
pdb|3VX7|A Chain A, Crystal Structure Of Kluyveromyces Marxianus Atg7ntd-Atg10
Complex
Length = 283
Score = 28.1 bits (61), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 42/102 (41%), Gaps = 8/102 (7%)
Query: 32 QDEGMYQQYIPLALHIAEDHFLSHESKDVQLLIACCIADVLRVYAPEAPYKDPDQVKTIF 91
Q +G Q I + IA D +S ++IAC I+ V++ P D +K
Sbjct: 146 QSDGATYQIISSKV-IASDSDISVSFIKQNVIIACVISGVIQKATP-------DNLKVCE 197
Query: 92 LFLIKQLNGLKDPKDPAFKRYFYLLENLAYVKSFNMCFELED 133
+ K + LKD K + L+ +++ +CF D
Sbjct: 198 KVVFKDFSHLKDIPSAVTKNILTVWSKLSPRETYTICFLRSD 239
>pdb|2AZX|A Chain A, Charged And Uncharged Trnas Adopt Distinct Conformations
When Complexed With Human Tryptophanyl-Trna Synthetase
pdb|2AZX|B Chain B, Charged And Uncharged Trnas Adopt Distinct Conformations
When Complexed With Human Tryptophanyl-Trna Synthetase
Length = 477
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 154 SGKVKSFMLDVLCPLITESDILSHELLDIILMNIVDPQK 192
+G++K +++VL PLI E E+ D I+ P+K
Sbjct: 427 TGELKKALIEVLQPLIAEHQARRKEVTDEIVKEFXTPRK 465
>pdb|3FWN|A Chain A, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With 6-
Phosphogluconate And
2'-Monophosphoadenosine-5'-Diphosphate
pdb|3FWN|B Chain B, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With 6-
Phosphogluconate And
2'-Monophosphoadenosine-5'-Diphosphate
Length = 480
Score = 28.1 bits (61), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 52/113 (46%), Gaps = 14/113 (12%)
Query: 121 YVKSFNMCFELEDSQEIFCALFSLM---FKIVNDE--------HSGKVKSFMLDVLCPLI 169
YVK + E D Q + +SL+ + N+E ++G++ S+++D+ +
Sbjct: 193 YVKMVHNGIEYGDMQ-LIAEAYSLLKGGLNLTNEELAQTFTEWNNGELSSYLIDITKDIF 251
Query: 170 TESDILSHELLDIILMNIVD--PQKTQRKNAYLLAKELIVKTNDTLEPYIQNL 220
T+ D + L+D+IL + K ++A L + L + T YI +L
Sbjct: 252 TKKDEDGNYLVDVILDEAANKGTGKWTSQSALDLGEPLSLITESVFARYISSL 304
>pdb|2ZYA|A Chain A, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With 6-
Phosphogluconate
pdb|2ZYA|B Chain B, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With 6-
Phosphogluconate
pdb|2ZYD|A Chain A, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With
Glucose
pdb|2ZYD|B Chain B, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With
Glucose
Length = 480
Score = 28.1 bits (61), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 52/113 (46%), Gaps = 14/113 (12%)
Query: 121 YVKSFNMCFELEDSQEIFCALFSLM---FKIVNDE--------HSGKVKSFMLDVLCPLI 169
YVK + E D Q + +SL+ + N+E ++G++ S+++D+ +
Sbjct: 193 YVKMVHNGIEYGDMQ-LIAEAYSLLKGGLNLTNEELAQTFTEWNNGELSSYLIDITKDIF 251
Query: 170 TESDILSHELLDIILMNIVD--PQKTQRKNAYLLAKELIVKTNDTLEPYIQNL 220
T+ D + L+D+IL + K ++A L + L + T YI +L
Sbjct: 252 TKKDEDGNYLVDVILDEAANKGTGKWTSQSALDLGEPLSLITESVFARYISSL 304
>pdb|2GL6|A Chain A, Crystal Structure Of Human Sarcomeric Mitochondrial
Creatine Kinase
pdb|2GL6|B Chain B, Crystal Structure Of Human Sarcomeric Mitochondrial
Creatine Kinase
pdb|2GL6|C Chain C, Crystal Structure Of Human Sarcomeric Mitochondrial
Creatine Kinase
pdb|2GL6|D Chain D, Crystal Structure Of Human Sarcomeric Mitochondrial
Creatine Kinase
pdb|2GL6|E Chain E, Crystal Structure Of Human Sarcomeric Mitochondrial
Creatine Kinase
pdb|2GL6|F Chain F, Crystal Structure Of Human Sarcomeric Mitochondrial
Creatine Kinase
pdb|2GL6|G Chain G, Crystal Structure Of Human Sarcomeric Mitochondrial
Creatine Kinase
pdb|2GL6|H Chain H, Crystal Structure Of Human Sarcomeric Mitochondrial
Creatine Kinase
Length = 392
Score = 27.7 bits (60), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 29/60 (48%)
Query: 121 YVKSFNMCFELEDSQEIFCALFSLMFKIVNDEHSGKVKSFMLDVLCPLITESDILSHELL 180
++K+ M E+S E+F LF + K+ ++ + +V D+ IT+ H +L
Sbjct: 78 FIKTVGMVAGDEESYEVFADLFDPVIKLRHNGYDPRVMKHTTDLDASKITQGQFDEHYVL 137
>pdb|4AV3|A Chain A, Crystal Structure Of Thermotoga Maritima Sodium Pumping
Membrane Integral Pyrophosphatase With Metal Ions In
Active Site
pdb|4AV3|B Chain B, Crystal Structure Of Thermotoga Maritima Sodium Pumping
Membrane Integral Pyrophosphatase With Metal Ions In
Active Site
pdb|4AV6|A Chain A, Crystal Structure Of Thermotoga Maritima Sodium Pumping
Membrane Integral Pyrophosphatase At 4 A In Complex With
Phosphate And Magnesium
pdb|4AV6|B Chain B, Crystal Structure Of Thermotoga Maritima Sodium Pumping
Membrane Integral Pyrophosphatase At 4 A In Complex With
Phosphate And Magnesium
Length = 735
Score = 27.7 bits (60), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 3/50 (6%)
Query: 201 LAKELIVKTNDTL-EPYIQNLTRLANAVFPNLGDIAPLGA--MEIFMGAM 247
+A +L+ KT L E +N +A+ V N+GD+A LGA +E F+GA+
Sbjct: 212 MAADLVGKTELNLPEDDPRNPATIADNVGDNVGDVAGLGADLLESFVGAI 261
>pdb|3ORU|A Chain A, Crystal Structure Of A Duf1989 Family Protein
(Tm1040_0329) From Silicibacter Sp. Tm1040 At 1.11 A
Resolution
pdb|3SIY|A Chain A, Crystal Structure Of A Duf1989 Family Protein
(Tm1040_0329) From Silicibacter Sp. Tm1040 At 1.35 A
Resolution
pdb|3SIY|B Chain B, Crystal Structure Of A Duf1989 Family Protein
(Tm1040_0329) From Silicibacter Sp. Tm1040 At 1.35 A
Resolution
pdb|3SIY|C Chain C, Crystal Structure Of A Duf1989 Family Protein
(Tm1040_0329) From Silicibacter Sp. Tm1040 At 1.35 A
Resolution
pdb|3SIY|D Chain D, Crystal Structure Of A Duf1989 Family Protein
(Tm1040_0329) From Silicibacter Sp. Tm1040 At 1.35 A
Resolution
Length = 234
Score = 27.3 bits (59), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 34 EGMYQQYIPLALHIAEDHFLSHESKDVQLLIACCIADVLRVYAPEA 79
EG ++ P + DH L DV ++I+CC D+L + EA
Sbjct: 176 EGGAXEWRP-PVSRRGDHVLFRAELDVVVVISCCPXDLLPINGEEA 220
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.140 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,347,318
Number of Sequences: 62578
Number of extensions: 296858
Number of successful extensions: 828
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 818
Number of HSP's gapped (non-prelim): 16
length of query: 253
length of database: 14,973,337
effective HSP length: 97
effective length of query: 156
effective length of database: 8,903,271
effective search space: 1388910276
effective search space used: 1388910276
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.9 bits)