BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10770
(253 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q498H0|PD5BA_XENLA Sister chromatid cohesion protein PDS5 homolog B-A OS=Xenopus
laevis GN=pds5b-a PE=1 SV=1
Length = 1448
Score = 221 bits (562), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 103/198 (52%), Positives = 140/198 (70%), Gaps = 1/198 (0%)
Query: 23 LAHTLQGMGQD-EGMYQQYIPLALHIAEDHFLSHESKDVQLLIACCIADVLRVYAPEAPY 81
+ T M QD E +QY+ LALH+A D FL H KDV+LL+ACC+AD+ R+YAPEAPY
Sbjct: 38 VVKTFMDMDQDSEEEKEQYLNLALHLASDFFLKHPDKDVRLLVACCLADIFRIYAPEAPY 97
Query: 82 KDPDQVKTIFLFLIKQLNGLKDPKDPAFKRYFYLLENLAYVKSFNMCFELEDSQEIFCAL 141
PD++K IF+F+ +QL GL+D K P F RYFYLLEN+A+VKS+N+CFELEDS EIF L
Sbjct: 98 TSPDKLKDIFMFISRQLKGLEDTKSPQFNRYFYLLENIAWVKSYNICFELEDSNEIFTQL 157
Query: 142 FSLMFKIVNDEHSGKVKSFMLDVLCPLITESDILSHELLDIILMNIVDPQKTQRKNAYLL 201
+ +F ++N+ H+ KV M+D++ ++ E D +S ELLD +L+N+V K K AY L
Sbjct: 158 YRTLFSVINNGHNQKVHMHMVDLMSSIVCEGDTVSQELLDSVLVNLVPAHKNLNKQAYDL 217
Query: 202 AKELIVKTNDTLEPYIQN 219
AK L+ +T +EPYI N
Sbjct: 218 AKALLKRTAQAIEPYITN 235
>sp|Q5F3U9|PDS5B_CHICK Sister chromatid cohesion protein PDS5 homolog B OS=Gallus gallus
GN=PDS5B PE=2 SV=3
Length = 1412
Score = 220 bits (560), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 108/233 (46%), Positives = 149/233 (63%), Gaps = 19/233 (8%)
Query: 6 HSFSRSKHNYLTFTP------------------QTLAHTLQGMGQD-EGMYQQYIPLALH 46
HS +R+ +T+ P + + T M QD E + Y+ LALH
Sbjct: 3 HSKTRANDGKITYPPGVKEISDKISKEEMVRRLKMVVKTFMDMDQDSEEEKELYLNLALH 62
Query: 47 IAEDHFLSHESKDVQLLIACCIADVLRVYAPEAPYKDPDQVKTIFLFLIKQLNGLKDPKD 106
+A D FL H KDV+LL+ACC+AD+ R+YAPEAPY PD++K IF+F+ +QL GL+D K
Sbjct: 63 LASDFFLKHPDKDVRLLVACCLADIFRIYAPEAPYTSPDKLKDIFMFITRQLKGLEDTKS 122
Query: 107 PAFKRYFYLLENLAYVKSFNMCFELEDSQEIFCALFSLMFKIVNDEHSGKVKSFMLDVLC 166
P F RYFYLLEN+A+VKS+N+CFELEDS EIF L+ +F ++N+ H+ KV M+D++
Sbjct: 123 PQFNRYFYLLENIAWVKSYNICFELEDSNEIFTQLYRTLFSVINNGHNQKVHMHMVDLMS 182
Query: 167 PLITESDILSHELLDIILMNIVDPQKTQRKNAYLLAKELIVKTNDTLEPYIQN 219
+I E D +S ELLD +L+N+V K K AY LAK L+ +T +EPYI N
Sbjct: 183 SIICEGDTVSQELLDTVLVNLVPAHKNLNKQAYDLAKALLKRTAQAIEPYITN 235
>sp|Q6TRW4|PDS5B_RAT Sister chromatid cohesion protein PDS5 homolog B OS=Rattus
norvegicus GN=Pds5b PE=2 SV=2
Length = 1447
Score = 220 bits (560), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 108/233 (46%), Positives = 149/233 (63%), Gaps = 19/233 (8%)
Query: 6 HSFSRSKHNYLTFTP------------------QTLAHTLQGMGQD-EGMYQQYIPLALH 46
HS +R+ +T+ P + + T M QD E + Y+ LALH
Sbjct: 3 HSKTRTNDGKITYPPGVKEISDKISKEEMVRRLKMVVKTFMDMDQDSEEEKELYLNLALH 62
Query: 47 IAEDHFLSHESKDVQLLIACCIADVLRVYAPEAPYKDPDQVKTIFLFLIKQLNGLKDPKD 106
+A D FL H KDV+LL+ACC+AD+ R+YAPEAPY PD++K IF+F+ +QL GL+D K
Sbjct: 63 LASDFFLKHPDKDVRLLVACCLADIFRIYAPEAPYTSPDKLKDIFMFITRQLKGLEDTKS 122
Query: 107 PAFKRYFYLLENLAYVKSFNMCFELEDSQEIFCALFSLMFKIVNDEHSGKVKSFMLDVLC 166
P F RYFYLLEN+A+VKS+N+CFELEDS EIF L+ +F ++N+ H+ KV M+D++
Sbjct: 123 PQFNRYFYLLENIAWVKSYNICFELEDSNEIFTQLYRTLFSVINNGHNQKVHMHMVDLMS 182
Query: 167 PLITESDILSHELLDIILMNIVDPQKTQRKNAYLLAKELIVKTNDTLEPYIQN 219
+I E D +S ELLD +L+N+V K K AY LAK L+ +T +EPYI N
Sbjct: 183 SIICEGDTVSQELLDTVLVNLVPAHKNLNKQAYDLAKALLKRTAQAIEPYITN 235
>sp|Q9NTI5|PDS5B_HUMAN Sister chromatid cohesion protein PDS5 homolog B OS=Homo sapiens
GN=PDS5B PE=1 SV=1
Length = 1447
Score = 220 bits (560), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 108/233 (46%), Positives = 149/233 (63%), Gaps = 19/233 (8%)
Query: 6 HSFSRSKHNYLTFTP------------------QTLAHTLQGMGQD-EGMYQQYIPLALH 46
HS +R+ +T+ P + + T M QD E + Y+ LALH
Sbjct: 3 HSKTRTNDGKITYPPGVKEISDKISKEEMVRRLKMVVKTFMDMDQDSEEEKELYLNLALH 62
Query: 47 IAEDHFLSHESKDVQLLIACCIADVLRVYAPEAPYKDPDQVKTIFLFLIKQLNGLKDPKD 106
+A D FL H KDV+LL+ACC+AD+ R+YAPEAPY PD++K IF+F+ +QL GL+D K
Sbjct: 63 LASDFFLKHPDKDVRLLVACCLADIFRIYAPEAPYTSPDKLKDIFMFITRQLKGLEDTKS 122
Query: 107 PAFKRYFYLLENLAYVKSFNMCFELEDSQEIFCALFSLMFKIVNDEHSGKVKSFMLDVLC 166
P F RYFYLLEN+A+VKS+N+CFELEDS EIF L+ +F ++N+ H+ KV M+D++
Sbjct: 123 PQFNRYFYLLENIAWVKSYNICFELEDSNEIFTQLYRTLFSVINNGHNQKVHMHMVDLMS 182
Query: 167 PLITESDILSHELLDIILMNIVDPQKTQRKNAYLLAKELIVKTNDTLEPYIQN 219
+I E D +S ELLD +L+N+V K K AY LAK L+ +T +EPYI N
Sbjct: 183 SIICEGDTVSQELLDTVLVNLVPAHKNLNKQAYDLAKALLKRTAQAIEPYITN 235
>sp|Q4VA53|PDS5B_MOUSE Sister chromatid cohesion protein PDS5 homolog B OS=Mus musculus
GN=Pds5b PE=1 SV=1
Length = 1446
Score = 219 bits (559), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 108/233 (46%), Positives = 149/233 (63%), Gaps = 19/233 (8%)
Query: 6 HSFSRSKHNYLTFTP------------------QTLAHTLQGMGQD-EGMYQQYIPLALH 46
HS +R+ +T+ P + + T M QD E + Y+ LALH
Sbjct: 3 HSKTRTNDGKITYPPGVKEISDKISKEEMVRRLKMVVKTFMDMDQDSEEEKELYLNLALH 62
Query: 47 IAEDHFLSHESKDVQLLIACCIADVLRVYAPEAPYKDPDQVKTIFLFLIKQLNGLKDPKD 106
+A D FL H KDV+LL+ACC+AD+ R+YAPEAPY PD++K IF+F+ +QL GL+D K
Sbjct: 63 LASDFFLKHPDKDVRLLVACCLADIFRIYAPEAPYTSPDKLKDIFMFITRQLKGLEDTKS 122
Query: 107 PAFKRYFYLLENLAYVKSFNMCFELEDSQEIFCALFSLMFKIVNDEHSGKVKSFMLDVLC 166
P F RYFYLLEN+A+VKS+N+CFELEDS EIF L+ +F ++N+ H+ KV M+D++
Sbjct: 123 PQFNRYFYLLENIAWVKSYNICFELEDSNEIFTQLYRTLFSVINNGHNQKVHMHMVDLMS 182
Query: 167 PLITESDILSHELLDIILMNIVDPQKTQRKNAYLLAKELIVKTNDTLEPYIQN 219
+I E D +S ELLD +L+N+V K K AY LAK L+ +T +EPYI N
Sbjct: 183 SIICEGDTVSQELLDTVLVNLVPAHKNLNKQAYDLAKALLKRTAQAIEPYITN 235
>sp|Q5U241|PD5BB_XENLA Sister chromatid cohesion protein PDS5 homolog B-B OS=Xenopus
laevis GN=pds5b-b PE=2 SV=2
Length = 1464
Score = 219 bits (558), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 102/198 (51%), Positives = 139/198 (70%), Gaps = 1/198 (0%)
Query: 23 LAHTLQGMGQD-EGMYQQYIPLALHIAEDHFLSHESKDVQLLIACCIADVLRVYAPEAPY 81
+ T M QD E +QY+ LALH+A D FL H KDV+LL+ACC+AD+ R+YAPEAPY
Sbjct: 38 VVKTFMDMDQDSEEEKEQYLNLALHLASDFFLKHPDKDVRLLVACCLADIFRIYAPEAPY 97
Query: 82 KDPDQVKTIFLFLIKQLNGLKDPKDPAFKRYFYLLENLAYVKSFNMCFELEDSQEIFCAL 141
PD++K IF+F+ +QL GL+D K P F RYFYLLEN+A+VKS+N+CFELED EIF L
Sbjct: 98 TSPDKLKDIFMFITRQLKGLEDTKSPQFNRYFYLLENIAWVKSYNICFELEDCNEIFTQL 157
Query: 142 FSLMFKIVNDEHSGKVKSFMLDVLCPLITESDILSHELLDIILMNIVDPQKTQRKNAYLL 201
+ +F ++N+ H+ KV M+D++ ++ E D +S ELLD +L+N+V K K AY L
Sbjct: 158 YRTLFSVINNGHNQKVHMHMVDLMSSIVCEGDTVSQELLDSVLVNLVPAHKNLNKQAYDL 217
Query: 202 AKELIVKTNDTLEPYIQN 219
AK L+ +T +EPYI N
Sbjct: 218 AKALLKRTAQAIEPYITN 235
>sp|Q5F3V3|PDS5A_CHICK Sister chromatid cohesion protein PDS5 homolog A OS=Gallus gallus
GN=PDS5A PE=2 SV=2
Length = 1330
Score = 215 bits (548), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 104/198 (52%), Positives = 141/198 (71%), Gaps = 1/198 (0%)
Query: 23 LAHTLQGMGQD-EGMYQQYIPLALHIAEDHFLSHESKDVQLLIACCIADVLRVYAPEAPY 81
+ T M QD E QQY+PLALH+A + FL + +KDV+LL+ACC+AD+ R+YAPEAPY
Sbjct: 42 VVKTFMDMDQDSEDEKQQYLPLALHLASEFFLRNPNKDVRLLVACCLADIFRIYAPEAPY 101
Query: 82 KDPDQVKTIFLFLIKQLNGLKDPKDPAFKRYFYLLENLAYVKSFNMCFELEDSQEIFCAL 141
D++K IFLF+ +QL GL+D K P F RYFYLLENLA+VKS+N+CFELED EIF L
Sbjct: 102 TSHDKLKDIFLFITRQLKGLEDTKSPQFNRYFYLLENLAWVKSYNICFELEDCNEIFIQL 161
Query: 142 FSLMFKIVNDEHSGKVKSFMLDVLCPLITESDILSHELLDIILMNIVDPQKTQRKNAYLL 201
F +F ++N+ H+ KV+ MLD++ +I E D ++ ELLD IL+N++ K K A+ L
Sbjct: 162 FRTLFSVINNSHNQKVQMHMLDLMSSIIMEGDGVTQELLDSILINLIPAHKNLNKQAFDL 221
Query: 202 AKELIVKTNDTLEPYIQN 219
AK L+ +T T+EP I N
Sbjct: 222 AKVLLKRTVQTIEPCIAN 239
>sp|Q4KLU7|PD5AB_XENLA Sister chromatid cohesion protein PDS5 homolog A-B OS=Xenopus
laevis GN=pds5a-b PE=1 SV=1
Length = 1323
Score = 213 bits (542), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 102/198 (51%), Positives = 139/198 (70%), Gaps = 1/198 (0%)
Query: 23 LAHTLQGMGQD-EGMYQQYIPLALHIAEDHFLSHESKDVQLLIACCIADVLRVYAPEAPY 81
+ T M QD E QQY+PLALH++ D FL + +KDV+LL+ACC+AD+ R+YAPEAPY
Sbjct: 40 VVKTFMDMDQDSEEEKQQYLPLALHLSSDFFLRNPNKDVRLLVACCLADIFRIYAPEAPY 99
Query: 82 KDPDQVKTIFLFLIKQLNGLKDPKDPAFKRYFYLLENLAYVKSFNMCFELEDSQEIFCAL 141
D++K IFLF+ +QL GL+D K P F RYFYLLENLA+VKS+N+CFELED EIF L
Sbjct: 100 TSHDKLKEIFLFITRQLKGLEDTKSPQFNRYFYLLENLAWVKSYNICFELEDCNEIFIQL 159
Query: 142 FSLMFKIVNDEHSGKVKSFMLDVLCPLITESDILSHELLDIILMNIVDPQKTQRKNAYLL 201
F +F ++N+ H+ KV+ MLD++ + E D ++ E LD IL+N++ K K A+ L
Sbjct: 160 FKTLFSVINNSHNQKVQMHMLDLMSSITMEGDGVTQEQLDSILINLISAHKNLNKQAFDL 219
Query: 202 AKELIVKTNDTLEPYIQN 219
AK L+ +T T+EP I N
Sbjct: 220 AKVLLKRTAQTIEPCIAN 237
>sp|Q6A026|PDS5A_MOUSE Sister chromatid cohesion protein PDS5 homolog A OS=Mus musculus
GN=Pds5a PE=3 SV=3
Length = 1332
Score = 211 bits (537), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 102/198 (51%), Positives = 140/198 (70%), Gaps = 1/198 (0%)
Query: 23 LAHTLQGMGQD-EGMYQQYIPLALHIAEDHFLSHESKDVQLLIACCIADVLRVYAPEAPY 81
+ T M QD E QQY+PLALH+A + FL + +KDV+LL+ACC+AD+ R+YAPEAPY
Sbjct: 47 VVKTFMDMDQDSEDEKQQYLPLALHLASEFFLRNPNKDVRLLVACCLADIFRIYAPEAPY 106
Query: 82 KDPDQVKTIFLFLIKQLNGLKDPKDPAFKRYFYLLENLAYVKSFNMCFELEDSQEIFCAL 141
D++K IFLF+ +QL GL+D K P F RYFYLLENLA+VKS+N+CFELED EIF L
Sbjct: 107 TSHDKLKDIFLFITRQLKGLEDTKSPQFNRYFYLLENLAWVKSYNICFELEDCNEIFIQL 166
Query: 142 FSLMFKIVNDEHSGKVKSFMLDVLCPLITESDILSHELLDIILMNIVDPQKTQRKNAYLL 201
F +F ++N+ H+ KV+ MLD++ +I E D ++ ELLD IL+N++ K K ++ L
Sbjct: 167 FRTLFSVINNSHNTKVQMHMLDLMSSIIMEGDGVTQELLDSILINLIPAHKNLNKQSFDL 226
Query: 202 AKELIVKTNDTLEPYIQN 219
AK L+ +T T+E I N
Sbjct: 227 AKVLLKRTVQTIEACIAN 244
>sp|A4L9P7|PDS5A_RAT Sister chromatid cohesion protein PDS5 homolog A OS=Rattus
norvegicus GN=Pds5a PE=2 SV=1
Length = 1333
Score = 211 bits (537), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 102/198 (51%), Positives = 140/198 (70%), Gaps = 1/198 (0%)
Query: 23 LAHTLQGMGQD-EGMYQQYIPLALHIAEDHFLSHESKDVQLLIACCIADVLRVYAPEAPY 81
+ T M QD E QQY+PLALH+A + FL + +KDV+LL+ACC+AD+ R+YAPEAPY
Sbjct: 47 VVKTFMDMDQDSEDEKQQYLPLALHLASEFFLRNPNKDVRLLVACCLADIFRIYAPEAPY 106
Query: 82 KDPDQVKTIFLFLIKQLNGLKDPKDPAFKRYFYLLENLAYVKSFNMCFELEDSQEIFCAL 141
D++K IFLF+ +QL GL+D K P F RYFYLLENLA+VKS+N+CFELED EIF L
Sbjct: 107 TSHDKLKDIFLFITRQLKGLEDTKSPQFNRYFYLLENLAWVKSYNICFELEDCNEIFIQL 166
Query: 142 FSLMFKIVNDEHSGKVKSFMLDVLCPLITESDILSHELLDIILMNIVDPQKTQRKNAYLL 201
F +F ++N+ H+ KV+ MLD++ +I E D ++ ELLD IL+N++ K K ++ L
Sbjct: 167 FRTLFSVINNSHNKKVQMHMLDLMSSIIMEGDGVTQELLDSILINLIPAHKNLNKQSFDL 226
Query: 202 AKELIVKTNDTLEPYIQN 219
AK L+ +T T+E I N
Sbjct: 227 AKVLLKRTVQTIEACIAN 244
>sp|Q29RF7|PDS5A_HUMAN Sister chromatid cohesion protein PDS5 homolog A OS=Homo sapiens
GN=PDS5A PE=1 SV=1
Length = 1337
Score = 211 bits (537), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 102/198 (51%), Positives = 140/198 (70%), Gaps = 1/198 (0%)
Query: 23 LAHTLQGMGQD-EGMYQQYIPLALHIAEDHFLSHESKDVQLLIACCIADVLRVYAPEAPY 81
+ T M QD E QQY+PLALH+A + FL + +KDV+LL+ACC+AD+ R+YAPEAPY
Sbjct: 48 VVKTFMDMDQDSEDEKQQYLPLALHLASEFFLRNPNKDVRLLVACCLADIFRIYAPEAPY 107
Query: 82 KDPDQVKTIFLFLIKQLNGLKDPKDPAFKRYFYLLENLAYVKSFNMCFELEDSQEIFCAL 141
D++K IFLF+ +QL GL+D K P F RYFYLLENLA+VKS+N+CFELED EIF L
Sbjct: 108 TSHDKLKDIFLFITRQLKGLEDTKSPQFNRYFYLLENLAWVKSYNICFELEDCNEIFIQL 167
Query: 142 FSLMFKIVNDEHSGKVKSFMLDVLCPLITESDILSHELLDIILMNIVDPQKTQRKNAYLL 201
F +F ++N+ H+ KV+ MLD++ +I E D ++ ELLD IL+N++ K K ++ L
Sbjct: 168 FRTLFSVINNSHNKKVQMHMLDLMSSIIMEGDGVTQELLDSILINLIPAHKNLNKQSFDL 227
Query: 202 AKELIVKTNDTLEPYIQN 219
AK L+ +T T+E I N
Sbjct: 228 AKVLLKRTVQTIEACIAN 245
>sp|Q4QXM3|PD5AA_XENLA Sister chromatid cohesion protein PDS5 homolog A-A OS=Xenopus
laevis GN=pds5a-a PE=1 SV=1
Length = 1323
Score = 211 bits (536), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 101/198 (51%), Positives = 139/198 (70%), Gaps = 1/198 (0%)
Query: 23 LAHTLQGMGQD-EGMYQQYIPLALHIAEDHFLSHESKDVQLLIACCIADVLRVYAPEAPY 81
+ T M QD E QQY+PLALH++ + FL + +KDV+LL+ACC+AD+ R+YAPEAPY
Sbjct: 40 VVKTYMDMDQDSEEEKQQYLPLALHLSSEFFLRNPNKDVRLLVACCLADIFRIYAPEAPY 99
Query: 82 KDPDQVKTIFLFLIKQLNGLKDPKDPAFKRYFYLLENLAYVKSFNMCFELEDSQEIFCAL 141
D++K IFLF+ +QL GL+D K P F RYFYLLENLA+VKS+N+CFELED EIF L
Sbjct: 100 TSHDKLKEIFLFITRQLKGLEDTKSPQFNRYFYLLENLAWVKSYNICFELEDCNEIFIQL 159
Query: 142 FSLMFKIVNDEHSGKVKSFMLDVLCPLITESDILSHELLDIILMNIVDPQKTQRKNAYLL 201
F +F ++N+ H+ KV+ MLD++ + E D ++ E LD IL+N++ K K A+ L
Sbjct: 160 FKTLFSVINNSHNQKVQMHMLDLMSSITMEGDGVTQEQLDSILINLISAHKNLNKQAFDL 219
Query: 202 AKELIVKTNDTLEPYIQN 219
AK L+ +T T+EP I N
Sbjct: 220 AKVLLKRTAQTIEPCIAN 237
>sp|A1L1F4|PDS5A_DANRE Sister chromatid cohesion protein PDS5 homolog A OS=Danio rerio
GN=pds5a PE=2 SV=1
Length = 1320
Score = 208 bits (529), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 101/196 (51%), Positives = 138/196 (70%), Gaps = 1/196 (0%)
Query: 23 LAHTLQGMGQD-EGMYQQYIPLALHIAEDHFLSHESKDVQLLIACCIADVLRVYAPEAPY 81
+ T M QD E QQY+ LALH+A + FL + +KDV+LL+ACC+AD+ R+YAPEAPY
Sbjct: 43 VVKTYMDMDQDSEEEKQQYLALALHLASEFFLRNPNKDVRLLVACCLADIFRIYAPEAPY 102
Query: 82 KDPDQVKTIFLFLIKQLNGLKDPKDPAFKRYFYLLENLAYVKSFNMCFELEDSQEIFCAL 141
D++K IFLF+ +QL GL+D K P F RYFYLLENLA+VKS+N+CFELED EIF L
Sbjct: 103 TSHDKLKEIFLFITRQLKGLEDTKSPQFNRYFYLLENLAWVKSYNICFELEDCNEIFIQL 162
Query: 142 FSLMFKIVNDEHSGKVKSFMLDVLCPLITESDILSHELLDIILMNIVDPQKTQRKNAYLL 201
F +F ++N+ H+ KV+ MLD++ +I E D ++ ELLD IL+N++ K K AY L
Sbjct: 163 FKTLFSVINNSHNQKVQMHMLDLMSSIIMEGDGVTQELLDTILINLIPAHKNLNKQAYDL 222
Query: 202 AKELIVKTNDTLEPYI 217
A+ L+ +T T+E I
Sbjct: 223 ARTLLKRTVQTIETCI 238
>sp|Q9HFF5|PDS5_SCHPO Sister chromatid cohesion protein pds5 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=pds5 PE=1 SV=1
Length = 1205
Score = 83.2 bits (204), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 103/201 (51%), Gaps = 11/201 (5%)
Query: 27 LQGMGQDEGMYQQYIPLALHIAEDHFLSHESKDVQLLIACCIADVLRVYAPEAPYKDPDQ 86
L + QD +P+A + ++ L H+ K ++ CCI ++LR+ AP+AP+ Q
Sbjct: 34 LTSLSQDTIDRDSVLPVARSLVNNNLLHHKDKGIRSYTLCCIVELLRLCAPDAPFT-LSQ 92
Query: 87 VKTIFLFLIKQLNGLKDPKDPAFKRYFYLLENLAYVKSFNMCFELEDSQEIFCALFSLMF 146
++ IF ++K L+GL + + + + + +LE+L+ VKS + +L +++E +F L F
Sbjct: 93 LEDIFQVILKILSGLMNQESTYYPQIYEILESLSNVKSAVLIVDLPNAEEFLVNIFRLFF 152
Query: 147 KIVNDEHSGKVKSFMLDVLCPLITESDILSHELLDIILMNIVDPQ----------KTQRK 196
+ + V+ +MLD++ LI E + + L+I+ ++ + T
Sbjct: 153 DLARKGTTKNVEFYMLDIINQLINEINTIPAAALNILFAQLISGKGVRQTIGSSDSTNHG 212
Query: 197 NAYLLAKELIVKTNDTLEPYI 217
A+ LA+ + + D L+ Y+
Sbjct: 213 PAFQLARNIFHDSADRLQRYV 233
>sp|Q04264|PDS5_YEAST Sister chromatid cohesion protein PDS5 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=PDS5 PE=1 SV=1
Length = 1277
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 68/132 (51%), Gaps = 2/132 (1%)
Query: 52 FLSHESKDVQLLIACCIADVLRVYAPEAPYKDPDQVKTIFLFLIKQLNGLKDPKDPAFKR 111
L H+ ++ ACC++D+LR+YAP+APY D Q+ IF ++ Q L D ++ +
Sbjct: 64 LLKHKDVGIRAFTACCLSDILRLYAPDAPYTDA-QLTDIFKLVLSQFEQLGDQENGYHIQ 122
Query: 112 YFYLLENLAYVKSFNMCFELEDSQEIFCALFSLMFKIVNDEHSGKVKSFMLDVLCPLITE 171
YL+ L +S + +L S + LF + + N ++ + + +L +I+E
Sbjct: 123 QTYLITKLLEYRSIVLLADLPSSNNLLIELFHIFYD-PNKSFPARLFNVIGGILGEVISE 181
Query: 172 SDILSHELLDII 183
D + E+L +I
Sbjct: 182 FDSVPLEVLRLI 193
>sp|Q552Q7|PDS5_DICDI Sister chromatid cohesion protein PDS5 homolog OS=Dictyostelium
discoideum GN=pds5 PE=3 SV=1
Length = 1450
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 43/68 (63%), Gaps = 3/68 (4%)
Query: 59 DVQLLIACCIADVLRVYAPEAPYKDPDQVKTIF-LFLIKQLNGLKDPKDPAFKRYFYLLE 117
+++L+ +CC++++ R+YAP P+ D +K +F LF + L G K K F +YF +LE
Sbjct: 215 EIRLMTSCCLSEIFRIYAPTLPF-DMVVLKVVFKLFTEQVLQGDKVDK-KLFPQYFQMLE 272
Query: 118 NLAYVKSF 125
L+ +K F
Sbjct: 273 RLSVIKVF 280
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.140 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,965,873
Number of Sequences: 539616
Number of extensions: 3823209
Number of successful extensions: 10303
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 10276
Number of HSP's gapped (non-prelim): 27
length of query: 253
length of database: 191,569,459
effective HSP length: 115
effective length of query: 138
effective length of database: 129,513,619
effective search space: 17872879422
effective search space used: 17872879422
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (27.7 bits)