Query psy10770
Match_columns 253
No_of_seqs 118 out of 205
Neff 5.5
Searched_HMMs 46136
Date Fri Aug 16 18:04:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10770.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10770hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1525|consensus 100.0 5.1E-53 1.1E-57 442.0 21.6 214 11-227 17-230 (1266)
2 KOG1525|consensus 99.4 2.5E-12 5.5E-17 136.7 13.7 209 24-236 445-661 (1266)
3 KOG1992|consensus 90.2 7.1 0.00015 41.5 13.7 119 102-226 603-733 (960)
4 PF02985 HEAT: HEAT repeat; I 86.9 0.65 1.4E-05 28.5 2.4 24 51-74 7-30 (31)
5 PF01602 Adaptin_N: Adaptin N 80.7 16 0.00034 35.4 10.2 25 51-75 274-298 (526)
6 PF14500 MMS19_N: Dos2-interac 78.1 55 0.0012 29.9 13.5 160 51-228 6-172 (262)
7 KOG2023|consensus 70.5 29 0.00064 36.5 9.3 128 95-230 566-714 (885)
8 PF03224 V-ATPase_H_N: V-ATPas 65.8 66 0.0014 29.6 10.1 115 38-173 146-272 (312)
9 PTZ00429 beta-adaptin; Provisi 62.9 2.1E+02 0.0046 30.3 14.1 140 51-216 263-402 (746)
10 KOG1241|consensus 61.4 1.8E+02 0.0038 31.2 12.9 47 50-100 557-607 (859)
11 PF00514 Arm: Armadillo/beta-c 59.8 9.4 0.0002 24.4 2.4 23 51-73 19-41 (41)
12 PF01602 Adaptin_N: Adaptin N 57.5 48 0.001 32.0 7.9 25 50-74 120-144 (526)
13 PF12755 Vac14_Fab1_bd: Vacuol 57.1 90 0.002 24.2 8.0 60 51-119 34-94 (97)
14 PF03378 CAS_CSE1: CAS/CSE pro 55.4 1.2E+02 0.0026 29.9 10.3 142 62-213 44-194 (435)
15 PF03224 V-ATPase_H_N: V-ATPas 53.9 1.8E+02 0.0039 26.7 12.2 98 13-121 27-134 (312)
16 PF09450 DUF2019: Domain of un 49.9 35 0.00076 27.5 4.7 47 14-74 28-74 (106)
17 PF13513 HEAT_EZ: HEAT-like re 48.3 60 0.0013 21.6 5.1 45 25-71 9-55 (55)
18 PF12612 TFCD_C: Tubulin foldi 46.4 1.7E+02 0.0037 25.0 8.9 34 58-93 21-57 (193)
19 cd00280 TRFH Telomeric Repeat 45.2 1.6E+02 0.0034 26.4 8.3 119 34-164 29-153 (200)
20 PTZ00429 beta-adaptin; Provisi 43.4 2.8E+02 0.0061 29.4 11.3 28 50-78 146-173 (746)
21 KOG0915|consensus 42.4 1.8E+02 0.004 33.4 10.0 176 14-232 990-1185(1702)
22 KOG2025|consensus 40.4 1.3E+02 0.0029 32.0 8.2 66 134-200 79-144 (892)
23 cd00020 ARM Armadillo/beta-cat 37.4 83 0.0018 23.1 4.9 64 52-122 15-79 (120)
24 PF12719 Cnd3: Nuclear condens 36.6 3.3E+02 0.0072 24.8 13.8 166 54-230 74-289 (298)
25 PF05004 IFRD: Interferon-rela 36.0 57 0.0012 30.5 4.5 42 51-92 235-279 (309)
26 KOG1248|consensus 35.7 6.9E+02 0.015 28.2 18.0 209 4-224 658-874 (1176)
27 PF14911 MMS22L_C: S-phase gen 33.1 4.7E+02 0.01 25.5 14.0 118 11-149 226-346 (373)
28 smart00139 MyTH4 Domain in Myo 33.1 2.3E+02 0.0051 23.4 7.3 90 134-228 18-117 (144)
29 KOG2022|consensus 32.8 6.2E+02 0.013 27.8 11.7 103 134-240 502-608 (982)
30 PF11864 DUF3384: Domain of un 32.3 4.6E+02 0.0099 25.8 10.3 130 105-243 147-280 (464)
31 PF05327 RRN3: RNA polymerase 30.7 3.3E+02 0.0071 27.6 9.2 63 123-190 61-123 (563)
32 COG5218 YCG1 Chromosome conden 30.5 5.1E+02 0.011 27.5 10.4 94 89-189 46-139 (885)
33 KOG1060|consensus 30.4 7.5E+02 0.016 27.0 12.1 156 38-224 318-475 (968)
34 cd07958 Anticodon_Ia_Leu_BEm A 30.1 1.7E+02 0.0037 21.8 5.6 27 60-87 87-113 (117)
35 KOG3674|consensus 29.9 73 0.0016 32.6 4.3 49 76-125 12-75 (696)
36 cd00197 VHS_ENTH_ANTH VHS, ENT 29.8 1.6E+02 0.0034 22.9 5.5 61 158-219 18-78 (115)
37 PF14000 Packaging_FI: DNA pac 29.7 41 0.0009 27.9 2.2 18 12-29 1-18 (125)
38 PF13764 E3_UbLigase_R4: E3 ub 28.3 6.8E+02 0.015 27.0 11.3 124 107-233 137-282 (802)
39 PF05997 Nop52: Nucleolar prot 27.7 4.3E+02 0.0093 23.4 9.4 165 17-190 18-196 (217)
40 smart00707 RPEL Repeat in Dros 27.6 39 0.00085 20.6 1.3 17 3-19 3-19 (26)
41 KOG2171|consensus 27.5 9E+02 0.02 27.0 14.3 176 38-228 74-294 (1075)
42 PF07781 Reovirus_Mu2: Reoviru 27.1 1E+02 0.0022 32.7 4.9 148 72-236 434-608 (735)
43 PF04118 Dopey_N: Dopey, N-ter 26.5 91 0.002 29.4 4.2 36 86-121 131-167 (307)
44 smart00288 VHS Domain present 25.6 2.3E+02 0.0049 23.0 5.9 73 153-226 13-86 (133)
45 PF12825 DUF3818: Domain of un 25.4 6E+02 0.013 24.3 9.5 152 69-226 160-335 (341)
46 PLN02959 aminoacyl-tRNA ligase 24.5 1.5E+02 0.0034 32.6 6.0 28 60-88 847-874 (1084)
47 PF10508 Proteasom_PSMB: Prote 24.3 7.1E+02 0.015 24.7 12.3 67 51-123 84-150 (503)
48 cd07959 Anticodon_Ia_Leu_AEc A 23.0 2.2E+02 0.0049 21.3 5.2 27 60-87 87-113 (117)
49 smart00185 ARM Armadillo/beta- 22.9 78 0.0017 19.1 2.1 21 52-72 20-40 (41)
50 PF12717 Cnd1: non-SMC mitotic 22.7 4.6E+02 0.01 21.9 10.7 140 57-213 1-159 (178)
51 PF05327 RRN3: RNA polymerase 22.6 6.7E+02 0.014 25.4 9.7 96 11-121 48-154 (563)
52 cd04405 RhoGAP_BRCC3-like RhoG 22.5 6.1E+02 0.013 23.3 8.8 104 88-192 106-225 (235)
53 PRK12539 RNA polymerase sigma 22.5 3.4E+02 0.0073 22.5 6.6 59 107-165 25-84 (184)
54 PF08568 Kinetochor_Ybp2: Unch 21.5 8.8E+02 0.019 24.8 10.9 77 11-103 36-115 (633)
55 PF02565 RecO_C: Recombination 21.4 1.8E+02 0.0039 21.7 4.3 60 59-123 4-64 (118)
56 PRK09639 RNA polymerase sigma 21.4 2.5E+02 0.0055 22.5 5.4 55 108-167 8-62 (166)
57 cd08050 TAF6 TATA Binding Prot 21.3 7E+02 0.015 23.6 11.2 128 85-227 174-320 (343)
58 PF02106 Fanconi_C: Fanconi an 21.2 7.1E+02 0.015 25.7 9.3 85 123-208 186-301 (559)
59 PF10363 DUF2435: Protein of u 20.1 4.1E+02 0.0089 20.4 8.3 83 140-223 3-88 (92)
No 1
>KOG1525|consensus
Probab=100.00 E-value=5.1e-53 Score=442.02 Aligned_cols=214 Identities=43% Similarity=0.689 Sum_probs=209.2
Q ss_pred CChhHHHHhHHHHHHHHhhcCCCchhhhhhHHHHHHHhhhhhhcCCCcchHHHHHHHHHHHHhhcCCCCCCCChHHHHHH
Q psy10770 11 SKHNYLTFTPQTLAHTLQGMGQDEGMYQQYIPLALHIAEDHFLSHESKDVQLLIACCIADVLRVYAPEAPYKDPDQVKTI 90 (253)
Q Consensus 11 ~~~~eLlkrLk~L~~~L~~~dQ~~~~~~sl~~~~~~Lv~~~LL~HkD~~Vr~~vAcCLadIlRI~APdaPy~d~~qLkdI 90 (253)
=+++||++||++|+++|.+++|+..+.+++.|++.||+++.||+|+|+|||+|||||++||||||||||||+| .|||||
T Consensus 17 ~s~~ell~rLk~l~~~l~~~~qd~~~~~~~~pl~~~l~~~~~L~h~d~dvrllvacCvseilRi~aPeaPy~~-~~lkdI 95 (1266)
T KOG1525|consen 17 ISKDELLKRLKKLANCLASLDQDNLDLASLLPLADHLIKDFLLKHKDKDVRLLVACCVSEILRIYAPEAPYTD-EQLKDI 95 (1266)
T ss_pred ccHHHHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHhhHHHhcCCCcChhHHHHHHHHHHHHHhCCCCCCcH-HHHHHH
Confidence 3899999999999999999999999999999999999999999999999999999999999999999999998 599999
Q ss_pred HHHHHHHhcCCCCCCCcchhHHHHHHHHHHhhhhhheeccCCCchHHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHhc
Q psy10770 91 FLFLIKQLNGLKDPKDPAFKRYFYLLENLAYVKSFNMCFELEDSQEIFCALFSLMFKIVNDEHSGKVKSFMLDVLCPLIT 170 (253)
Q Consensus 91 F~l~v~~l~~L~d~~~p~f~~~~~lLesLA~vks~vl~~DL~d~d~Li~~lF~~ff~~v~~~~~~~V~~~m~~Il~~vIe 170 (253)
|++|++||.||.|+.||||.||+||||+||+|| ++++.+++||++++.++|++||+++|.+|+++|.+ |.+||+.+|.
T Consensus 96 f~~~~~q~~gL~d~~sp~f~r~~~lletl~~~k-~~l~~~l~d~~e~~~~~f~~f~d~~~~~~~~~v~~-~~~i~~~li~ 173 (1266)
T KOG1525|consen 96 FQLILSQFSGLGDVESPYFKRYFYLLETLAKVK-FCLLMLLEDCQELVHELFRTFFDLARKGHPKKVFN-MLDIAIMLIT 173 (1266)
T ss_pred HHHHHHHHhhccCCCCcchhhHHHHHHHHHHhH-HHheeeccchHHHHHHHHHHHHHHHhccccHHHHH-HHHHHHHHHH
Confidence 999999999999999999999999999999999 88889999999999999999999999999999999 9999999999
Q ss_pred cccCCCHHHHHHHHHcccCCcccCChhHHHHHHHHHHHchhhhhHHHHHHhhhhccc
Q psy10770 171 ESDILSHELLDIILMNIVDPQKTQRKNAYLLAKELIVKTNDTLEPYIQNLTRLANAV 227 (253)
Q Consensus 171 E~e~vp~~vld~IL~~l~~~~k~~~p~A~~LA~~vi~~c~~kL~~~v~~~f~~~~~~ 227 (253)
|.+.||.++|++||.++++++++..+.|++||..++++|++++++.+++||+..+.-
T Consensus 174 e~d~v~~e~L~~ll~~lv~~~~~~~~~a~~la~~li~~~a~~~~~~i~~f~~~~~~~ 230 (1266)
T KOG1525|consen 174 EEDTVQSELLDVLLENLVKPGRDTIKEADKLASDLIERCADNLEDTIANFLNSCLTE 230 (1266)
T ss_pred hhccchHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHhhhhhchhHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999988543
No 2
>KOG1525|consensus
Probab=99.40 E-value=2.5e-12 Score=136.73 Aligned_cols=209 Identities=18% Similarity=0.204 Sum_probs=189.4
Q ss_pred HHHHhhcCCC--chhhhhhHHHHHHHhhhhhhcCCCcchHHHHHHHHHHHHh--hcCCCCCCCChHHHHHHHHHHHHHhc
Q psy10770 24 AHTLQGMGQD--EGMYQQYIPLALHIAEDHFLSHESKDVQLLIACCIADVLR--VYAPEAPYKDPDQVKTIFLFLIKQLN 99 (253)
Q Consensus 24 ~~~L~~~dQ~--~~~~~sl~~~~~~Lv~~~LL~HkD~~Vr~~vAcCLadIlR--I~APdaPy~d~~qLkdIF~l~v~~l~ 99 (253)
.-.|..+.|+ -++.+++.++.+.++.=....|++-++..-...||.+.+| |.+|..||++ +.++.||..|+..++
T Consensus 445 E~il~~~L~P~~l~~q~Rmk~l~~~l~~~D~~a~kaf~~i~~~q~~ls~~vr~~I~~~k~~~~d-~~~k~i~~~i~~i~~ 523 (1266)
T KOG1525|consen 445 ERILAEYLVPYPLSTQERMKHLYQLLAGLDLNAHKAFNEILKRQSRLSEEVRDYITLSKTPNTD-DSMKKIFSKIVKISE 523 (1266)
T ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHhcccHhhhhHHHHHHHHHHHHHHHHHHHhccccCCCcc-HhHHHHHHHHHHHHH
Confidence 4456666565 4678999999999999999999999999999999999999 9999999998 699999999999999
Q ss_pred CCCCCCCcchhHHH--HHHHHHHhhhhhheeccCCC--chHHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHhccccCC
Q psy10770 100 GLKDPKDPAFKRYF--YLLENLAYVKSFNMCFELED--SQEIFCALFSLMFKIVNDEHSGKVKSFMLDVLCPLITESDIL 175 (253)
Q Consensus 100 ~L~d~~~p~f~~~~--~lLesLA~vks~vl~~DL~d--~d~Li~~lF~~ff~~v~~~~~~~V~~~m~~Il~~vIeE~e~v 175 (253)
.|.|+.+..|.... .+|+.++++++++.+++.+. |.++...+|+.|+..++..++.++...|..+|++.|.| |
T Consensus 524 ~lpD~~s~~~~~~~f~~~L~~~~~~~s~~~~L~~~~~~C~~l~~~v~~~l~e~~~~~~s~nlF~~~~~~li~~I~~---v 600 (1266)
T KOG1525|consen 524 NLPDPSSRSYDSMKFADVLETLAKVRSCLVSLDSPSISCKELLITVKEILFELGRKKQSKNLFSSMEKELIERIAE---V 600 (1266)
T ss_pred hcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHhcc---h
Confidence 99999886555444 49999999999999999664 88888899999999999999999999999999999999 8
Q ss_pred CHHHHHHHHHcccCCcccCChhHHHHHHHHHHHchhhhhHHHHHHhhhhcccCCCCCCccc
Q psy10770 176 SHELLDIILMNIVDPQKTQRKNAYLLAKELIVKTNDTLEPYIQNLTRLANAVFPNLGDIAP 236 (253)
Q Consensus 176 p~~vld~IL~~l~~~~k~~~p~A~~LA~~vi~~c~~kL~~~v~~~f~~~~~~~~~~~~~~~ 236 (253)
+-+++..+...+...+...+..+..+++.++..|+-++.+++-+-++.++.+...||.+++
T Consensus 601 ~~di~~s~~~~ik~~~~~i~~~~~~l~e~v~~~~a~kl~~~lle~ls~~~~~~~~~s~~v~ 661 (1266)
T KOG1525|consen 601 SLDILESISALIKLNNIVIAEVSLLLLEGVLSEKALKLKKYLLEALSSIHPDLFKYSESVL 661 (1266)
T ss_pred hhhhHHHHHHHHhhhhhhHHHHHhhcccccchhhHHhHHHHHHHHhhhcCcchhhhhHHHH
Confidence 9999999998888888889999999999999999999999999999999888777776654
No 3
>KOG1992|consensus
Probab=90.16 E-value=7.1 Score=41.53 Aligned_cols=119 Identities=16% Similarity=0.299 Sum_probs=77.6
Q ss_pred CCCCCcchhHHHHHHHHHHhhhhhheeccCCC--chHHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHhccccC-CCHH
Q psy10770 102 KDPKDPAFKRYFYLLENLAYVKSFNMCFELED--SQEIFCALFSLMFKIVNDEHSGKVKSFMLDVLCPLITESDI-LSHE 178 (253)
Q Consensus 102 ~d~~~p~f~~~~~lLesLA~vks~vl~~DL~d--~d~Li~~lF~~ff~~v~~~~~~~V~~~m~~Il~~vIeE~e~-vp~~ 178 (253)
++|++|.| ++|+.|+++-+ +.-.++-.- --.+...||=.|-.+.+.+. .+...+...+|+.+++-+.. +|.+
T Consensus 603 KNPs~P~f--nHYLFEsi~~l--i~~t~~~~~~~vs~~e~aL~p~fq~Il~eDI-~EfiPYvfQlla~lve~~~~~ip~~ 677 (960)
T KOG1992|consen 603 KNPSNPQF--NHYLFESIGLL--IRKTCKANPSAVSSLEEALFPVFQTILSEDI-QEFIPYVFQLLAVLVEHSSGTIPDS 677 (960)
T ss_pred cCCCCchh--HHHHHHHHHHH--HHHHhccCchHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCCchh
Confidence 56888844 67899999843 222233210 11355566644444433332 35567889999999999887 8877
Q ss_pred HHHHHHHcccCCc----ccCChhHHHHHHHHHHHchhhhh-----HHHHHHhhhhcc
Q psy10770 179 LLDIILMNIVDPQ----KTQRKNAYLLAKELIVKTNDTLE-----PYIQNLTRLANA 226 (253)
Q Consensus 179 vld~IL~~l~~~~----k~~~p~A~~LA~~vi~~c~~kL~-----~~v~~~f~~~~~ 226 (253)
....+- .++.|+ +..-|+.-+|-+..+++.+...+ .+|-.+|..++.
T Consensus 678 ~~~l~~-~lLsp~lW~r~gNipalvrLl~aflk~g~~~~~~~~~l~~iLGifqkLia 733 (960)
T KOG1992|consen 678 YSPLFP-PLLSPNLWKRSGNIPALVRLLQAFLKTGSQIVEAADKLSGILGIFQKLIA 733 (960)
T ss_pred HHHHHH-HhcCHHHHhhcCCcHHHHHHHHHHHhcCchhhcccccchhHHHHHHHHhc
Confidence 655444 777664 45668888999999998876555 567778877755
No 4
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=86.93 E-value=0.65 Score=28.48 Aligned_cols=24 Identities=21% Similarity=0.387 Sum_probs=20.8
Q ss_pred hhhcCCCcchHHHHHHHHHHHHhh
Q psy10770 51 HFLSHESKDVQLLIACCIADVLRV 74 (253)
Q Consensus 51 ~LL~HkD~~Vr~~vAcCLadIlRI 74 (253)
+++++++.+||..++-||.+|.+.
T Consensus 7 ~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 7 QLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred HHcCCCCHHHHHHHHHHHHHHHhh
Confidence 578899999999999999999875
No 5
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=80.68 E-value=16 Score=35.35 Aligned_cols=25 Identities=12% Similarity=0.242 Sum_probs=21.8
Q ss_pred hhhcCCCcchHHHHHHHHHHHHhhc
Q psy10770 51 HFLSHESKDVQLLIACCIADVLRVY 75 (253)
Q Consensus 51 ~LL~HkD~~Vr~~vAcCLadIlRI~ 75 (253)
.+|.++|..+|..+..||..+.+.+
T Consensus 274 ~lL~s~~~nvr~~~L~~L~~l~~~~ 298 (526)
T PF01602_consen 274 KLLSSSDPNVRYIALDSLSQLAQSN 298 (526)
T ss_dssp HHHTSSSHHHHHHHHHHHHHHCCHC
T ss_pred HHhhcccchhehhHHHHHHHhhccc
Confidence 5677999999999999999998875
No 6
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=78.11 E-value=55 Score=29.93 Aligned_cols=160 Identities=14% Similarity=0.229 Sum_probs=103.0
Q ss_pred hhhcCCCcchHHHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHHHhcCCCCCCCcchhHHHHHHHHHHhhhhhheecc
Q psy10770 51 HFLSHESKDVQLLIACCIADVLRVYAPEAPYKDPDQVKTIFLFLIKQLNGLKDPKDPAFKRYFYLLENLAYVKSFNMCFE 130 (253)
Q Consensus 51 ~LL~HkD~~Vr~~vAcCLadIlRI~APdaPy~d~~qLkdIF~l~v~~l~~L~d~~~p~f~~~~~lLesLA~vks~vl~~D 130 (253)
..|.+.|..+|+-.--||++++-=..|+. .+. +|..-+++|+.+-+ +|...- .....-|..|.+ +-.
T Consensus 6 ~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~-L~~-~ev~~L~~F~~~rl---~D~~~~--~~~l~gl~~L~~------~~~ 72 (262)
T PF14500_consen 6 EYLTSEDPIIRAKALELLSEVLERLPPDF-LSR-QEVQVLLDFFCSRL---DDHACV--QPALKGLLALVK------MKN 72 (262)
T ss_pred hhhCCCCHHHHHHHHHHHHHHHHhCCHhh-ccH-HHHHHHHHHHHHHh---ccHhhH--HHHHHHHHHHHh------CcC
Confidence 46788899999999999999998755554 774 79999999999865 443331 112222333332 222
Q ss_pred CCCchHHHHHHHHHHHHhhcc-CcchhHHHHHHHHHHHHhccc----cCCCHHHHHHHHHcccCCcccC--ChhHHHHHH
Q psy10770 131 LEDSQEIFCALFSLMFKIVND-EHSGKVKSFMLDVLCPLITES----DILSHELLDIILMNIVDPQKTQ--RKNAYLLAK 203 (253)
Q Consensus 131 L~d~d~Li~~lF~~ff~~v~~-~~~~~V~~~m~~Il~~vIeE~----e~vp~~vld~IL~~l~~~~k~~--~p~A~~LA~ 203 (253)
.+ .+...++.+.+|+-+.. .++.+.+...-.|+..+++.. .....+.+..++ +.+.+.|+. ---++++.+
T Consensus 73 ~~--~~~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i-~~~~gEkDPRnLl~~F~l~~ 149 (262)
T PF14500_consen 73 FS--PESAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFI-QLIDGEKDPRNLLLSFKLLK 149 (262)
T ss_pred CC--hhhHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHH-HHhccCCCHHHHHHHHHHHH
Confidence 22 23355666666655543 566777777777777766654 356778888888 677776653 346778887
Q ss_pred HHHHHchhhhhHHHHHHhhhhcccC
Q psy10770 204 ELIVKTNDTLEPYIQNLTRLANAVF 228 (253)
Q Consensus 204 ~vi~~c~~kL~~~v~~~f~~~~~~~ 228 (253)
.+++.-. +.+....+|--+.--|
T Consensus 150 ~i~~~~~--~~~~~e~lFd~~~cYF 172 (262)
T PF14500_consen 150 VILQEFD--ISEFAEDLFDVFSCYF 172 (262)
T ss_pred HHHHhcc--cchhHHHHHHHhhhee
Confidence 7766655 3677777776655433
No 7
>KOG2023|consensus
Probab=70.49 E-value=29 Score=36.49 Aligned_cols=128 Identities=23% Similarity=0.279 Sum_probs=82.7
Q ss_pred HHHhcCCCCCCCcchhHHHHHHHHHHhhhhhheeccCCCchHHHHHHHHHHHHhhc--------cCcchhHH-------H
Q psy10770 95 IKQLNGLKDPKDPAFKRYFYLLENLAYVKSFNMCFELEDSQEIFCALFSLMFKIVN--------DEHSGKVK-------S 159 (253)
Q Consensus 95 v~~l~~L~d~~~p~f~~~~~lLesLA~vks~vl~~DL~d~d~Li~~lF~~ff~~v~--------~~~~~~V~-------~ 159 (253)
++.+..|+|.+. .-|-+||-++.|-+..-.--+|=|+ ..|+-+|+++. ..|+..++ -
T Consensus 566 i~KW~~lsd~DK----dLfPLLEClSsia~AL~~gF~P~~~----~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI 637 (885)
T KOG2023|consen 566 IEKWELLSDSDK----DLFPLLECLSSIASALGVGFLPYAQ----PVYQRCFRILQKTLQLLAKVQQDPTVEAPDKDFII 637 (885)
T ss_pred HHHHHhcCcccc----hHHHHHHHHHHHHHHHhccccccCH----HHHHHHHHHHHHHHHHHHhccCCccccCCCcceEE
Confidence 444445555443 3456788888877665544445454 44555555553 23322222 1
Q ss_pred HHHHHHHHHhcc----ccC--CCHHHHHHHHHcccCCcccCChhHHHHHHHHHHHchhhhhHHHHHHhhhhcccCCC
Q psy10770 160 FMLDVLCPLITE----SDI--LSHELLDIILMNIVDPQKTQRKNAYLLAKELIVKTNDTLEPYIQNLTRLANAVFPN 230 (253)
Q Consensus 160 ~m~~Il~~vIeE----~e~--vp~~vld~IL~~l~~~~k~~~p~A~~LA~~vi~~c~~kL~~~v~~~f~~~~~~~~~ 230 (253)
.-+|.++.+.+- .+. -++.+++.++.++..+.-...-.||.|-.++++.|.+...|++..|+-.++..++.
T Consensus 638 ~sLDL~SGLaegLg~~ie~Lva~snl~~lll~C~~D~~peVRQS~FALLGDltk~c~~~v~p~~~~fl~~lg~Nl~~ 714 (885)
T KOG2023|consen 638 VSLDLLSGLAEGLGSHIEPLVAQSNLLDLLLQCLQDEVPEVRQSAFALLGDLTKACFEHVIPNLADFLPILGANLNP 714 (885)
T ss_pred EeHHHHhHHHHHhhhchHHHhhhccHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHhhcCCh
Confidence 223344443332 222 35678999999998887777888999999999999999999999999888766654
No 8
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=65.79 E-value=66 Score=29.60 Aligned_cols=115 Identities=20% Similarity=0.300 Sum_probs=63.2
Q ss_pred hhhHHHHHHHhhhhhhcCCCcchHHHHHHHHHHHHhhcCCCCCCCChHHHHHHH------HHHHHHhcCCC-CCCCcchh
Q psy10770 38 QQYIPLALHIAEDHFLSHESKDVQLLIACCIADVLRVYAPEAPYKDPDQVKTIF------LFLIKQLNGLK-DPKDPAFK 110 (253)
Q Consensus 38 ~sl~~~~~~Lv~~~LL~HkD~~Vr~~vAcCLadIlRI~APdaPy~d~~qLkdIF------~l~v~~l~~L~-d~~~p~f~ 110 (253)
+.+..+.+-|.+ .++++|.+++-.+..|++.++|. ++.+.+| ..+++.++... ..++...+
T Consensus 146 ~~l~~ll~~L~~--~l~~~~~~~~~~av~~L~~LL~~----------~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Q 213 (312)
T PF03224_consen 146 EALPKLLQWLSS--QLSSSDSELQYIAVQCLQNLLRS----------KEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQ 213 (312)
T ss_dssp HHHHHHHHHHH---TT-HHHH---HHHHHHHHHHHTS----------HHHHHHHHTHHHHHHHHHHHH---------HHH
T ss_pred HHHHHHHHHHHH--hhcCCCcchHHHHHHHHHHHhCc----------chhHHHHHhcCcHHHHHHHHHhhcccCCCCchh
Confidence 445555555555 67778899999999999999996 4777666 34444443222 23344455
Q ss_pred HHHHHHHHHHhhhhhheeccCCCchHHHHH-----HHHHHHHhhccCcchhHHHHHHHHHHHHhcccc
Q psy10770 111 RYFYLLENLAYVKSFNMCFELEDSQEIFCA-----LFSLMFKIVNDEHSGKVKSFMLDVLCPLITESD 173 (253)
Q Consensus 111 ~~~~lLesLA~vks~vl~~DL~d~d~Li~~-----lF~~ff~~v~~~~~~~V~~~m~~Il~~vIeE~e 173 (253)
-.|+.+ .|++++-.+. +.+.+ ++..+.++++....++|.+....++..+++...
T Consensus 214 l~Y~~l-------l~lWlLSF~~--~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~ 272 (312)
T PF03224_consen 214 LQYQAL-------LCLWLLSFEP--EIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAP 272 (312)
T ss_dssp HHHHHH-------HHHHHHTTSH--HHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSS
T ss_pred HHHHHH-------HHHHHHhcCH--HHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccH
Confidence 555544 3555555542 22222 455666666666777777777777777776654
No 9
>PTZ00429 beta-adaptin; Provisional
Probab=62.85 E-value=2.1e+02 Score=30.34 Aligned_cols=140 Identities=13% Similarity=0.061 Sum_probs=80.7
Q ss_pred hhhcCCCcchHHHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHHHhcCCCCCCCcchhHHHHHHHHHHhhhhhheecc
Q psy10770 51 HFLSHESKDVQLLIACCIADVLRVYAPEAPYKDPDQVKTIFLFLIKQLNGLKDPKDPAFKRYFYLLENLAYVKSFNMCFE 130 (253)
Q Consensus 51 ~LL~HkD~~Vr~~vAcCLadIlRI~APdaPy~d~~qLkdIF~l~v~~l~~L~d~~~p~f~~~~~lLesLA~vks~vl~~D 130 (253)
..|+|.|..|-.-++.|+..+. |+.+++..+.+++-+..-+-.|.. ++| .-+|-+|.++..+-.
T Consensus 263 ~~Lq~~N~AVVl~Aik~il~l~-------~~~~~~~~~~~~~rl~~pLv~L~s-s~~--eiqyvaLr~I~~i~~------ 326 (746)
T PTZ00429 263 PRMSHQNPAVVMGAIKVVANLA-------SRCSQELIERCTVRVNTALLTLSR-RDA--ETQYIVCKNIHALLV------ 326 (746)
T ss_pred HHhcCCCHHHHHHHHHHHHHhc-------CcCCHHHHHHHHHHHHHHHHHhhC-CCc--cHHHHHHHHHHHHHH------
Confidence 4488999999999998888764 222234566666555443333422 222 456666777643321
Q ss_pred CCCchHHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHhccccCCCHHHHHHHHHcccCCcccCChhHHHHHHHHHHHch
Q psy10770 131 LEDSQEIFCALFSLMFKIVNDEHSGKVKSFMLDVLCPLITESDILSHELLDIILMNIVDPQKTQRKNAYLLAKELIVKTN 210 (253)
Q Consensus 131 L~d~d~Li~~lF~~ff~~v~~~~~~~V~~~m~~Il~~vIeE~e~vp~~vld~IL~~l~~~~k~~~p~A~~LA~~vi~~c~ 210 (253)
....++..-++.||-. .+-|..|...-++||..+.+|... .++++.+..... ...+.=.+-|-+-|.+|+
T Consensus 327 --~~P~lf~~~~~~Ff~~--~~Dp~yIK~~KLeIL~~Lane~Nv--~~IL~EL~eYa~----d~D~ef~r~aIrAIg~lA 396 (746)
T PTZ00429 327 --IFPNLLRTNLDSFYVR--YSDPPFVKLEKLRLLLKLVTPSVA--PEILKELAEYAS----GVDMVFVVEVVRAIASLA 396 (746)
T ss_pred --HCHHHHHHHHHhhhcc--cCCcHHHHHHHHHHHHHHcCcccH--HHHHHHHHHHhh----cCCHHHHHHHHHHHHHHH
Confidence 1235666667888754 445667899999999998888642 345555554333 222222233334445566
Q ss_pred hhhhHH
Q psy10770 211 DTLEPY 216 (253)
Q Consensus 211 ~kL~~~ 216 (253)
.|+...
T Consensus 397 ~k~~~~ 402 (746)
T PTZ00429 397 IKVDSV 402 (746)
T ss_pred HhChHH
Confidence 555443
No 10
>KOG1241|consensus
Probab=61.41 E-value=1.8e+02 Score=31.24 Aligned_cols=47 Identities=15% Similarity=0.328 Sum_probs=35.0
Q ss_pred hhhhcCCCc----chHHHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHHHhcC
Q psy10770 50 DHFLSHESK----DVQLLIACCIADVLRVYAPEAPYKDPDQVKTIFLFLIKQLNG 100 (253)
Q Consensus 50 ~~LL~HkD~----~Vr~~vAcCLadIlRI~APdaPy~d~~qLkdIF~l~v~~l~~ 100 (253)
.+.|.+.|+ +++...+-||.-|+|..+||.|-.. | +|-.+|++.|..
T Consensus 557 ~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~-d---~iM~lflri~~s 607 (859)
T KOG1241|consen 557 SQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIREVS-D---QIMGLFLRIFES 607 (859)
T ss_pred HHhccHhhHHHHHHHHHHHHHHHHHHHHHccccchhHH-H---HHHHHHHHHHcC
Confidence 445555554 6899999999999999999988764 3 455666676665
No 11
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=59.81 E-value=9.4 Score=24.36 Aligned_cols=23 Identities=17% Similarity=0.238 Sum_probs=20.0
Q ss_pred hhhcCCCcchHHHHHHHHHHHHh
Q psy10770 51 HFLSHESKDVQLLIACCIADVLR 73 (253)
Q Consensus 51 ~LL~HkD~~Vr~~vAcCLadIlR 73 (253)
++|+|.|.+||--++.+|..|.|
T Consensus 19 ~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 19 QLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp HHTTSSSHHHHHHHHHHHHHHHT
T ss_pred HHHcCCCHHHHHHHHHHHHHHhC
Confidence 46779999999999999998865
No 12
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=57.46 E-value=48 Score=31.98 Aligned_cols=25 Identities=24% Similarity=0.178 Sum_probs=22.9
Q ss_pred hhhhcCCCcchHHHHHHHHHHHHhh
Q psy10770 50 DHFLSHESKDVQLLIACCIADVLRV 74 (253)
Q Consensus 50 ~~LL~HkD~~Vr~~vAcCLadIlRI 74 (253)
.++|.|++.-||--++.|+..+.|.
T Consensus 120 ~~ll~~~~~~VRk~A~~~l~~i~~~ 144 (526)
T PF01602_consen 120 IKLLSDPSPYVRKKAALALLKIYRK 144 (526)
T ss_dssp HHHHHSSSHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCchHHHHHHHHHHHHHhcc
Confidence 4678899999999999999999998
No 13
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=57.11 E-value=90 Score=24.24 Aligned_cols=60 Identities=15% Similarity=0.213 Sum_probs=35.6
Q ss_pred hhhcCCCcchHHHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHHHhc-CCCCCCCcchhHHHHHHHHH
Q psy10770 51 HFLSHESKDVQLLIACCIADVLRVYAPEAPYKDPDQVKTIFLFLIKQLN-GLKDPKDPAFKRYFYLLENL 119 (253)
Q Consensus 51 ~LL~HkD~~Vr~~vAcCLadIlRI~APdaPy~d~~qLkdIF~l~v~~l~-~L~d~~~p~f~~~~~lLesL 119 (253)
..+..+|..||-|++-||-+|.|++- +++-.-|.-+++.+. ..+|++ +.=++.-.+|.++
T Consensus 34 ~~~~D~d~rVRy~AcEaL~ni~k~~~--------~~~l~~f~~IF~~L~kl~~D~d-~~Vr~~a~~Ld~l 94 (97)
T PF12755_consen 34 KCFDDQDSRVRYYACEALYNISKVAR--------GEILPYFNEIFDALCKLSADPD-ENVRSAAELLDRL 94 (97)
T ss_pred HHcCCCcHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHcCCc-hhHHHHHHHHHHH
Confidence 45667788899999999999999852 233334444444333 234443 3344444555543
No 14
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=55.38 E-value=1.2e+02 Score=29.94 Aligned_cols=142 Identities=20% Similarity=0.334 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHhhcCCC-CCCCChHHHHHHHHHHHHHhcCCCCCCCcchhHHHHHHHHHHhhhhhheeccCCCch---HH
Q psy10770 62 LLIACCIADVLRVYAPE-APYKDPDQVKTIFLFLIKQLNGLKDPKDPAFKRYFYLLENLAYVKSFNMCFELEDSQ---EI 137 (253)
Q Consensus 62 ~~vAcCLadIlRI~APd-aPy~d~~qLkdIF~l~v~~l~~L~d~~~p~f~~~~~lLesLA~vks~vl~~DL~d~d---~L 137 (253)
-|+.=|+.=++=++.-+ .||.+ ++-.-+.-++.... ++|++|.|. +|+-|+++.+=- .+++- +.+ .+
T Consensus 44 eylMk~iMRvl~~~~e~~~p~~~--~il~~L~~il~~v~--kNPsnP~Fn--HylFEsi~~lir--~~~~~-~~~~v~~~ 114 (435)
T PF03378_consen 44 EYLMKCIMRVLSVLQEDILPIAV--EILQHLTAILKEVS--KNPSNPRFN--HYLFESIGALIR--FVCEA-DPEAVSQF 114 (435)
T ss_dssp HHHHHHHHHHHHHSTTTTGGGHH--HHHHHHHHHHHHHH--TS---HHHH--HHHHHHHHHHHH--HS-GG-GHH---HH
T ss_pred hHHHHHHHHHHHHhHHHHHHHHH--HHHHHHHHHHHHHH--hCCCCcchh--hhHHHHHHHHHH--hccCC-ChhHHHHH
Confidence 37777877777665555 67752 33333333333332 358899775 567899985422 22321 122 45
Q ss_pred HHHHHHHHHHhhccCcchhHHHHHHHHHHHHhcccc--CCCHH---HHHHHHHcccCCcccCChhHHHHHHHHHHHchhh
Q psy10770 138 FCALFSLMFKIVNDEHSGKVKSFMLDVLCPLITESD--ILSHE---LLDIILMNIVDPQKTQRKNAYLLAKELIVKTNDT 212 (253)
Q Consensus 138 i~~lF~~ff~~v~~~~~~~V~~~m~~Il~~vIeE~e--~vp~~---vld~IL~~l~~~~k~~~p~A~~LA~~vi~~c~~k 212 (253)
-..+|-.|-.+...+. .+...+...|++.++|-.. .+|.. ++..+|..-.=+.+..-|+--+|-+..+++.+..
T Consensus 115 E~~L~P~f~~ILq~dV-~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~gniPalvrLL~a~i~k~~~~ 193 (435)
T PF03378_consen 115 EEALFPPFQEILQQDV-QEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERRGNIPALVRLLQAYIKKDPSF 193 (435)
T ss_dssp HHHHHHHHHHHHHTT--TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGSTTTHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccCCCcCcHHHHHHHHHHhCchh
Confidence 5556666665554443 3556777889999888876 55543 3444443333334555677778999999998876
Q ss_pred h
Q psy10770 213 L 213 (253)
Q Consensus 213 L 213 (253)
+
T Consensus 194 i 194 (435)
T PF03378_consen 194 I 194 (435)
T ss_dssp -
T ss_pred h
Confidence 5
No 15
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=53.94 E-value=1.8e+02 Score=26.71 Aligned_cols=98 Identities=15% Similarity=0.119 Sum_probs=47.2
Q ss_pred hhHHHHhHHHHHHHHhhcCCC--chhhhhhHHHHHHHhhhhhhcCCCcchHHHHHHHHHHHHhhcCCCCCCCChHHHHH-
Q psy10770 13 HNYLTFTPQTLAHTLQGMGQD--EGMYQQYIPLALHIAEDHFLSHESKDVQLLIACCIADVLRVYAPEAPYKDPDQVKT- 89 (253)
Q Consensus 13 ~~eLlkrLk~L~~~L~~~dQ~--~~~~~sl~~~~~~Lv~~~LL~HkD~~Vr~~vAcCLadIlRI~APdaPy~d~~qLkd- 89 (253)
+++=.+.++++++....-.++ +.+.+.+..+.-.|.+.- .++.++.-|+-..+.|+++- -|.-. +-+.+
T Consensus 27 s~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~~---~~~~d~v~yvL~li~dll~~----~~~~~-~~~~~~ 98 (312)
T PF03224_consen 27 SEEDLSLIKKLDKQSKEERRELLEEDGDQYASLFLNLLNKL---SSNDDTVQYVLTLIDDLLSD----DPSRV-ELFLEL 98 (312)
T ss_dssp -HHHHHHHHHHHHHHH-------------------HHHHHH------HHHHHHHHHHHHHHHH-----SSSSH-HHHHHH
T ss_pred CHHHHHHHHHHHCCCHHHHHHHHHhchhhHHHHHHHHHHHc---cCcHHHHHHHHHHHHHHHhc----CHHHH-HHHHHh
Confidence 445566677777776664222 345566777777777665 66889999999999999985 33332 22222
Q ss_pred -------HHHHHHHHhcCCCCCCCcchhHHHHHHHHHHh
Q psy10770 90 -------IFLFLIKQLNGLKDPKDPAFKRYFYLLENLAY 121 (253)
Q Consensus 90 -------IF~l~v~~l~~L~d~~~p~f~~~~~lLesLA~ 121 (253)
.|.-|++. |..++..--.+..++|.++..
T Consensus 99 ~~~~~~~~~~~fl~l---l~~~D~~i~~~a~~iLt~Ll~ 134 (312)
T PF03224_consen 99 AKQDDSDPYSPFLKL---LDRNDSFIQLKAAFILTSLLS 134 (312)
T ss_dssp HH-TTH--HHHHHHH----S-SSHHHHHHHHHHHHHHHT
T ss_pred cccccchhHHHHHHH---hcCCCHHHHHHHHHHHHHHHH
Confidence 55655552 333444455566667766653
No 16
>PF09450 DUF2019: Domain of unknown function (DUF2019); InterPro: IPR018568 Protein of unknown function found in bacteria. ; PDB: 2I9C_A.
Probab=49.94 E-value=35 Score=27.48 Aligned_cols=47 Identities=26% Similarity=0.260 Sum_probs=28.7
Q ss_pred hHHHHhHHHHHHHHhhcCCCchhhhhhHHHHHHHhhhhhhcCCCcchHHHHHHHHHHHHhh
Q psy10770 14 NYLTFTPQTLAHTLQGMGQDEGMYQQYIPLALHIAEDHFLSHESKDVQLLIACCIADVLRV 74 (253)
Q Consensus 14 ~eLlkrLk~L~~~L~~~dQ~~~~~~sl~~~~~~Lv~~~LL~HkD~~Vr~~vAcCLadIlRI 74 (253)
|.+-+++..+.++|...+-+. ++.+ -.||+|.|.+||+..|- ..||+
T Consensus 28 Nr~~~k~~~~~~eLk~r~gd~--r~aL---------l~LL~hpn~~VRl~AA~---~~L~~ 74 (106)
T PF09450_consen 28 NRLYDKMIRIYDELKSRGGDQ--RDAL---------LPLLKHPNMQVRLWAAA---HTLRY 74 (106)
T ss_dssp HHHHHHHHHHHHHHHHSTT-G--GGGG---------GGGGGSS-HHHHHHHHH---TTTTT
T ss_pred HHHHHHHHHHHHHHHhcCcch--HHHH---------HHHHcCCChhHHHHHHH---HHHHh
Confidence 445566666666665543221 2222 36899999999999984 66774
No 17
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=48.34 E-value=60 Score=21.60 Aligned_cols=45 Identities=13% Similarity=0.183 Sum_probs=29.1
Q ss_pred HHHhhcCCC--chhhhhhHHHHHHHhhhhhhcCCCcchHHHHHHHHHHH
Q psy10770 25 HTLQGMGQD--EGMYQQYIPLALHIAEDHFLSHESKDVQLLIACCIADV 71 (253)
Q Consensus 25 ~~L~~~dQ~--~~~~~sl~~~~~~Lv~~~LL~HkD~~Vr~~vAcCLadI 71 (253)
..|..+-+. +....-+..+...|. .+|++.+.+||...+-||..|
T Consensus 9 ~aLg~l~~~~~~~~~~~~~~~~~~L~--~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 9 WALGRLAEGCPELLQPYLPELLPALI--PLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHCTTTTTHHHHHHHHHHHHHHHH--HHTTSSSHHHHHHHHHHHHCH
T ss_pred HHHhhHhcccHHHHHHHHHHHHHHHH--HHHcCCCHHHHHHHHHHHhcC
Confidence 345555443 233344455555555 677888889999999998764
No 18
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=46.44 E-value=1.7e+02 Score=25.05 Aligned_cols=34 Identities=21% Similarity=0.463 Sum_probs=23.9
Q ss_pred cchHHHHHHHHHHHHhhcCC---CCCCCChHHHHHHHHH
Q psy10770 58 KDVQLLIACCIADVLRVYAP---EAPYKDPDQVKTIFLF 93 (253)
Q Consensus 58 ~~Vr~~vAcCLadIlRI~AP---daPy~d~~qLkdIF~l 93 (253)
..||..++-|+..++.-..| ..|+- ++|+++|..
T Consensus 21 DrvR~~A~~~l~~ll~~~~~~~~~ip~~--~~L~~i~~~ 57 (193)
T PF12612_consen 21 DRVREVAGKCLQRLLHSQDPTIPHIPHR--EELQDIFPS 57 (193)
T ss_pred HHHHHHHHHHHHHHhcCCCccccCCCcH--HHHHHHccc
Confidence 45999999999999954433 45543 578887764
No 19
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=45.19 E-value=1.6e+02 Score=26.36 Aligned_cols=119 Identities=9% Similarity=0.120 Sum_probs=76.4
Q ss_pred chhhhhhHHHHHHHhhhhhhcCCCcchHHHHHHHHHHHHhhcCCCCCCCChHHH------HHHHHHHHHHhcCCCCCCCc
Q psy10770 34 EGMYQQYIPLALHIAEDHFLSHESKDVQLLIACCIADVLRVYAPEAPYKDPDQV------KTIFLFLIKQLNGLKDPKDP 107 (253)
Q Consensus 34 ~~~~~sl~~~~~~Lv~~~LL~HkD~~Vr~~vAcCLadIlRI~APdaPy~d~~qL------kdIF~l~v~~l~~L~d~~~p 107 (253)
..|=.....++..|+...+=.+....=++++++||+=|--==.+|.-|++++.+ -.||..|-+.+. -|
T Consensus 29 ~~dFr~~rdi~e~ll~~~~~~~a~~~k~l~i~QfLsRI~eG~~LD~~Fd~~~~~TPLESAl~v~~~I~~E~~------~~ 102 (200)
T cd00280 29 YEDFRRTRDIAEALLVGPLKLTATQLKTLRIMQFLSRIAEGKNLDCQFENDEELTPLESALMVLESIEKEFS------LP 102 (200)
T ss_pred hHHHHHHHHHHHHHHhccccccccchhHhHHHHHHHHHHcCCCCCCccCCCCCcChHHHHHHHHHHHHHhcC------Cc
Confidence 456677788899999887777777888999999998666666788888864322 345555544432 11
Q ss_pred chhHHHHHHHHHHhhhhhheeccCCCchHHHHHHHHHHHHhhccCcchhHHHHHHHH
Q psy10770 108 AFKRYFYLLENLAYVKSFNMCFELEDSQEIFCALFSLMFKIVNDEHSGKVKSFMLDV 164 (253)
Q Consensus 108 ~f~~~~~lLesLA~vks~vl~~DL~d~d~Li~~lF~~ff~~v~~~~~~~V~~~m~~I 164 (253)
..-+...+++-.+..+++|..-. ..+.-.++++.+|+ +++.++. +..+..|
T Consensus 103 --~~lhe~i~~lik~~aV~VCm~~g-~Fk~A~eiLkr~~~--d~~~~~~-r~kL~~I 153 (200)
T cd00280 103 --ETLHEEIRKLIKEQAVAVCMENG-EFKKAEEVLKRLFS--DPESQKL-RMKLLMI 153 (200)
T ss_pred --HHHHHHHHHHHHHHHHHHHHhcC-chHHHHHHHHHHhc--CCCchhH-HHHHHHH
Confidence 22344455566666667777654 45666778888887 3343333 5554443
No 20
>PTZ00429 beta-adaptin; Provisional
Probab=43.40 E-value=2.8e+02 Score=29.44 Aligned_cols=28 Identities=7% Similarity=0.031 Sum_probs=23.5
Q ss_pred hhhhcCCCcchHHHHHHHHHHHHhhcCCC
Q psy10770 50 DHFLSHESKDVQLLIACCIADVLRVYAPE 78 (253)
Q Consensus 50 ~~LL~HkD~~Vr~~vAcCLadIlRI~APd 78 (253)
++.|.|++.-||--+|.|+.-++|+ .|+
T Consensus 146 kk~L~D~~pYVRKtAalai~Kly~~-~pe 173 (746)
T PTZ00429 146 RRAVADPDPYVRKTAAMGLGKLFHD-DMQ 173 (746)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHhh-Ccc
Confidence 3456899999999999999999997 454
No 21
>KOG0915|consensus
Probab=42.37 E-value=1.8e+02 Score=33.45 Aligned_cols=176 Identities=16% Similarity=0.180 Sum_probs=86.2
Q ss_pred hHHHHhHHHHHHHHhhc--CCCchhhhhh---------------HHHHHHHhhhhhhcCCCcchHHHHHHHHH--HHHhh
Q psy10770 14 NYLTFTPQTLAHTLQGM--GQDEGMYQQY---------------IPLALHIAEDHFLSHESKDVQLLIACCIA--DVLRV 74 (253)
Q Consensus 14 ~eLlkrLk~L~~~L~~~--dQ~~~~~~sl---------------~~~~~~Lv~~~LL~HkD~~Vr~~vAcCLa--dIlRI 74 (253)
+++---|++|-=.|.+. |.+..-+++. +...++..+.=|=+-.+++-|+--|||+| |++|=
T Consensus 990 ~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g 1069 (1702)
T KOG0915|consen 990 EKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQG 1069 (1702)
T ss_pred HhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcC
Confidence 34444566666666665 3332223333 33444444444444589999999999964 99984
Q ss_pred cCCCCCCCC-hHHHHHHHHHHHHHhcCCCCCCCcchhHHHHHHHHHHhhhhhheeccCCCchHHHHHHHHHHHHhhccCc
Q psy10770 75 YAPEAPYKD-PDQVKTIFLFLIKQLNGLKDPKDPAFKRYFYLLENLAYVKSFNMCFELEDSQEIFCALFSLMFKIVNDEH 153 (253)
Q Consensus 75 ~APdaPy~d-~~qLkdIF~l~v~~l~~L~d~~~p~f~~~~~lLesLA~vks~vl~~DL~d~d~Li~~lF~~ff~~v~~~~ 153 (253)
.|++. .+.+.++|...++....+.+ .-=.-.--....++ |.||-++|.. |
T Consensus 1070 ----~~~~~~~e~lpelw~~~fRvmDDIKE---sVR~aa~~~~~~ls--Kl~vr~~d~~--------------------~ 1120 (1702)
T KOG0915|consen 1070 ----RPFDQVKEKLPELWEAAFRVMDDIKE---SVREAADKAARALS--KLCVRICDVT--------------------N 1120 (1702)
T ss_pred ----CChHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH--HHHhhhcccC--------------------C
Confidence 45542 13455566555555443332 11111222333444 4455555542 2
Q ss_pred chhHHHHHHHHHHHHhccccCCCHHHHHHHHHcccCCcccCChhHHHHHHHHHHHchhhhhHHHHHHhhhhcccCCCCC
Q psy10770 154 SGKVKSFMLDVLCPLITESDILSHELLDIILMNIVDPQKTQRKNAYLLAKELIVKTNDTLEPYIQNLTRLANAVFPNLG 232 (253)
Q Consensus 154 ~~~V~~~m~~Il~~vIeE~e~vp~~vld~IL~~l~~~~k~~~p~A~~LA~~vi~~c~~kL~~~v~~~f~~~~~~~~~~~ 232 (253)
+.+-...|-.||=.++++.-- . ........+...--++.+..+..++|++....-..+..+++..
T Consensus 1121 ~~~~~~~l~~iLPfLl~~gim--s------------~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE 1185 (1702)
T KOG0915|consen 1121 GAKGKEALDIILPFLLDEGIM--S------------KVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELE 1185 (1702)
T ss_pred cccHHHHHHHHHHHHhccCcc--c------------chHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccc
Confidence 333333344444444433210 0 0012233444555556666666666666666666655555543
No 22
>KOG2025|consensus
Probab=40.36 E-value=1.3e+02 Score=32.03 Aligned_cols=66 Identities=14% Similarity=0.263 Sum_probs=51.6
Q ss_pred chHHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHhccccCCCHHHHHHHHHcccCCcccCChhHHH
Q psy10770 134 SQEIFCALFSLMFKIVNDEHSGKVKSFMLDVLCPLITESDILSHELLDIILMNIVDPQKTQRKNAYL 200 (253)
Q Consensus 134 ~d~Li~~lF~~ff~~v~~~~~~~V~~~m~~Il~~vIeE~e~vp~~vld~IL~~l~~~~k~~~p~A~~ 200 (253)
.+|++..+|.+.+... +...++|+.-...|+..+.+|...+|.+|-+.|...+...-+...|+-+.
T Consensus 79 e~DlV~~~f~hlLRg~-Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRi 144 (892)
T KOG2025|consen 79 EEDLVAGTFYHLLRGT-ESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRI 144 (892)
T ss_pred hhhHHHHHHHHHHhcc-cCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHH
Confidence 5689999999988765 45567999999999999999999999999988887776544343444443
No 23
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=37.41 E-value=83 Score=23.14 Aligned_cols=64 Identities=20% Similarity=0.184 Sum_probs=39.5
Q ss_pred hhcCCCcchHHHHHHHHHHHHhhcCCCCCCCChHHHH-HHHHHHHHHhcCCCCCCCcchhHHHHHHHHHHhh
Q psy10770 52 FLSHESKDVQLLIACCIADVLRVYAPEAPYKDPDQVK-TIFLFLIKQLNGLKDPKDPAFKRYFYLLENLAYV 122 (253)
Q Consensus 52 LL~HkD~~Vr~~vAcCLadIlRI~APdaPy~d~~qLk-dIF~l~v~~l~~L~d~~~p~f~~~~~lLesLA~v 122 (253)
+|++.+..+|-.++-||..+..-. +++.. ..++ +++..++..+. +.+..-.......|.+++..
T Consensus 15 ~l~~~~~~~~~~a~~~l~~l~~~~---~~~~~-~~~~~~~i~~l~~~l~---~~~~~v~~~a~~~L~~l~~~ 79 (120)
T cd00020 15 LLSSSDENVQREAAWALSNLSAGN---NDNIQ-AVVEAGGLPALVQLLK---SEDEEVVKAALWALRNLAAG 79 (120)
T ss_pred HHHcCCHHHHHHHHHHHHHHhcCC---HHHHH-HHHHCCChHHHHHHHh---CCCHHHHHHHHHHHHHHccC
Confidence 567778899999999999877652 22221 2223 55556666554 34444555666777777643
No 24
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=36.56 E-value=3.3e+02 Score=24.80 Aligned_cols=166 Identities=14% Similarity=0.185 Sum_probs=95.6
Q ss_pred cCCCcchHHHHHHHHHHHHhhcCCCCCCCCh-----HHHHHHHHHHHHHhcCCCCCCCcchhHHHHHHHHHHhhhhhhee
Q psy10770 54 SHESKDVQLLIACCIADVLRVYAPEAPYKDP-----DQVKTIFLFLIKQLNGLKDPKDPAFKRYFYLLENLAYVKSFNMC 128 (253)
Q Consensus 54 ~HkD~~Vr~~vAcCLadIlRI~APdaPy~d~-----~qLkdIF~l~v~~l~~L~d~~~p~f~~~~~lLesLA~vks~vl~ 128 (253)
+..+..||.-+.-|+.|++..|-++..-+.. .....+.+++.+.+..- ++ .-+....|-+++.= .
T Consensus 74 ~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~----~~--~~~~~a~EGl~KLl----L 143 (298)
T PF12719_consen 74 QKDDEEVKITALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSE----NP--ELQAIAVEGLCKLL----L 143 (298)
T ss_pred HhCCHHHHHHHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcC----CH--HHHHHHHHHHHHHH----h
Confidence 4568889999999999999999877444321 12466777777776543 22 23444445554311 1
Q ss_pred ccCCCc-hHHHHHHHHHHHHhhcc---------------------CcchhHHHHHHHHHHHHhccccC-------C-CHH
Q psy10770 129 FELEDS-QEIFCALFSLMFKIVND---------------------EHSGKVKSFMLDVLCPLITESDI-------L-SHE 178 (253)
Q Consensus 129 ~DL~d~-d~Li~~lF~~ff~~v~~---------------------~~~~~V~~~m~~Il~~vIeE~e~-------v-p~~ 178 (253)
.+.-.. .+++..|.-.+|+-.+. .|+..+.......+..+.+-.+. | |..
T Consensus 144 ~~~i~~~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ffp~y~~s~~~~Q~~l~~~f~~~l~~~~~~~~~~~~~~~~v~~~~ 223 (298)
T PF12719_consen 144 SGRISDPPKVLSRLLLLYFNPSTEDNQRLRQCLSVFFPVYASSSPENQERLAEAFLPTLRTLSNAPDELDSPLAMVSPSQ 223 (298)
T ss_pred cCCCCcHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhCcccccCchhhCCHHH
Confidence 222112 34444444444443322 35567777777777776666554 2 344
Q ss_pred HHHHHHHcccCCcc-----c----CChhHHHHHHHHHHHch----hh--hhHHHHHHhhhhcccCCC
Q psy10770 179 LLDIILMNIVDPQK-----T----QRKNAYLLAKELIVKTN----DT--LEPYIQNLTRLANAVFPN 230 (253)
Q Consensus 179 vld~IL~~l~~~~k-----~----~~p~A~~LA~~vi~~c~----~k--L~~~v~~~f~~~~~~~~~ 230 (253)
+...++ .+..+.+ + ..+..-.||.++++.-. .+ -.+.+++.++.+-++.++
T Consensus 224 v~~~lv-~lt~~~~~~~~~~~~~~~~~~h~~La~~il~~i~~~~~~~~~~~k~~~~~L~~L~i~~~~ 289 (298)
T PF12719_consen 224 VASFLV-DLTDPSKLVKESNQEIQNESVHVDLAIDILNEILSDPEKEKEERKALCKALSKLEISLDE 289 (298)
T ss_pred HHHHHH-HHCChhhccCccccccccccHHHHHHHHHHHHHHhccccchHHHHHHHHHHhccccCcCC
Confidence 444444 4443321 1 23455577777776654 33 678888888888776544
No 25
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=35.96 E-value=57 Score=30.46 Aligned_cols=42 Identities=19% Similarity=0.293 Sum_probs=33.3
Q ss_pred hhhcCCCcchHHHHHHHHH---HHHhhcCCCCCCCChHHHHHHHH
Q psy10770 51 HFLSHESKDVQLLIACCIA---DVLRVYAPEAPYKDPDQVKTIFL 92 (253)
Q Consensus 51 ~LL~HkD~~Vr~~vAcCLa---dIlRI~APdaPy~d~~qLkdIF~ 92 (253)
.+|.+.|.+||..++-+|| |+.|=...|.+|.+.++|....+
T Consensus 235 ~lL~s~d~~VRiAAGEaiAll~E~~~~~~~~~~~~~~~~l~~~l~ 279 (309)
T PF05004_consen 235 ELLDSDDVDVRIAAGEAIALLYELARDHEEDFLYEDMEELLEQLR 279 (309)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHhhcccccccccCHHHHHHHHH
Confidence 4899999999999999988 88887777778877666644443
No 26
>KOG1248|consensus
Probab=35.71 E-value=6.9e+02 Score=28.17 Aligned_cols=209 Identities=15% Similarity=0.163 Sum_probs=126.0
Q ss_pred hhhhccCCChhHHHHhHHHHHHHHhhcCCCc-hhhhhhHHHHHHHhhhhhhcCCCcchHHHHHHHHHHHHhhcCCCCCCC
Q psy10770 4 IEHSFSRSKHNYLTFTPQTLAHTLQGMGQDE-GMYQQYIPLALHIAEDHFLSHESKDVQLLIACCIADVLRVYAPEAPYK 82 (253)
Q Consensus 4 ~~~~~~~~~~~eLlkrLk~L~~~L~~~dQ~~-~~~~sl~~~~~~Lv~~~LL~HkD~~Vr~~vAcCLadIlRI~APdaPy~ 82 (253)
+.+-+.+++.+.+-||.=++-++|....-.+ -..+....+.+.|.+. ++..+.-+|+----|+.-|++...
T Consensus 658 v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds--~qs~~~~~~~~rl~~L~~L~~~~~------ 729 (1176)
T KOG1248|consen 658 VDPEFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDS--FQSSSSPAQASRLKCLKRLLKLLS------ 729 (1176)
T ss_pred hhHHhhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHH--HhccchHHHHHHHHHHHHHHHhcc------
Confidence 4566777777888888888888888863322 2334455555555544 345566678888889999999853
Q ss_pred ChHHHHHHHHHHHHHhcCCCCCCCcchhHHHHHHHHHHhhhhhheeccCCC--chHHHHHHHHHHHHhhccCcchhHHHH
Q psy10770 83 DPDQVKTIFLFLIKQLNGLKDPKDPAFKRYFYLLENLAYVKSFNMCFELED--SQEIFCALFSLMFKIVNDEHSGKVKSF 160 (253)
Q Consensus 83 d~~qLkdIF~l~v~~l~~L~d~~~p~f~~~~~lLesLA~vks~vl~~DL~d--~d~Li~~lF~~ff~~v~~~~~~~V~~~ 160 (253)
. +..--|++++-..+=.+.+.+...=+..|-+|-.+..+++ -+|..+ +.+.+.+++..+....-++-...+-..
T Consensus 730 ~-e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~---~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~ 805 (1176)
T KOG1248|consen 730 A-EHCDLIPKLIPEVILSLKEVNVKARRNAFALLVFIGAIQS---SLDDGNEPASAILNEFLSIISAGLVGDSTRVVASD 805 (1176)
T ss_pred H-HHHHHHHHHHHHHHHhcccccHHHHhhHHHHHHHHHHHHh---hhcccccchHHHHHHHHHHHHhhhcccHHHHHHHH
Confidence 1 4555566666666555566666666777888888887554 444433 245666666666654333333334444
Q ss_pred HHHHHHHHhccccCCCHHHHHHHHHcccCCcccCChhHHHHHHHHHHHch-----hhhhHHHHHHhhhh
Q psy10770 161 MLDVLCPLITESDILSHELLDIILMNIVDPQKTQRKNAYLLAKELIVKTN-----DTLEPYIQNLTRLA 224 (253)
Q Consensus 161 m~~Il~~vIeE~e~vp~~vld~IL~~l~~~~k~~~p~A~~LA~~vi~~c~-----~kL~~~v~~~f~~~ 224 (253)
+..+-..+-++.+.+..+.+.-++.++----.+.+|.-.+-|-..+..+. ..+++++.+.+..+
T Consensus 806 Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sl 874 (1176)
T KOG1248|consen 806 IVAITHILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSL 874 (1176)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHH
Confidence 77777777777888898888888855532112233333344444444333 33445554444444
No 27
>PF14911 MMS22L_C: S-phase genomic integrity recombination mediator, C-terminal
Probab=33.12 E-value=4.7e+02 Score=25.51 Aligned_cols=118 Identities=14% Similarity=0.166 Sum_probs=73.4
Q ss_pred CChhHHHHhHHHHHHHHhhcCCC-chhhhhhHHHHHHHhhhhhhcCCCcchHHHHHHHHHHHHhhcC--CCCCCCChHHH
Q psy10770 11 SKHNYLTFTPQTLAHTLQGMGQD-EGMYQQYIPLALHIAEDHFLSHESKDVQLLIACCIADVLRVYA--PEAPYKDPDQV 87 (253)
Q Consensus 11 ~~~~eLlkrLk~L~~~L~~~dQ~-~~~~~sl~~~~~~Lv~~~LL~HkD~~Vr~~vAcCLadIlRI~A--PdaPy~d~~qL 87 (253)
|...-.+.-|++|.+.+.. |+ ..+..-+..+.-.+.+.-++-|...-||..+.-=+-.|++-+. ++..- .+++
T Consensus 226 p~l~~vL~fl~~Ll~~~~~--~~~~~~~~~~~~~lp~lL~c~~~v~e~~~~k~~a~e~l~~mv~~~~~~~~~~~--~~~l 301 (373)
T PF14911_consen 226 PRLASVLAFLQQLLKRLQR--QNENQILTLLRLVLPSLLECLMLVNEEPQVKKLATELLQYMVESCQVGSSGEP--REQL 301 (373)
T ss_pred CcHHHHHHHHHHHHHhcCc--ccchhHHHHHHHhhHHHHHHHhhcCCCcchhHHHHHHHHHHHHcccccCcchH--HHHH
Confidence 4555666667777666652 22 2333444555556666666667677788888777777776544 22222 2577
Q ss_pred HHHHHHHHHHhcCCCCCCCcchhHHHHHHHHHHhhhhhheeccCCCchHHHHHHHHHHHHhh
Q psy10770 88 KTIFLFLIKQLNGLKDPKDPAFKRYFYLLENLAYVKSFNMCFELEDSQEIFCALFSLMFKIV 149 (253)
Q Consensus 88 kdIF~l~v~~l~~L~d~~~p~f~~~~~lLesLA~vks~vl~~DL~d~d~Li~~lF~~ff~~v 149 (253)
..+|+-|+.--- .-|-.++|.+||++|+.. .++|..++-+.=..+
T Consensus 302 ~s~lrsfvqk~l------~~~t~~~f~~l~~vA~l~-----------p~lV~~Lip~i~q~l 346 (373)
T PF14911_consen 302 TSVLRSFVQKYL------AHYTYQYFQFLEKVAELD-----------PQLVISLIPTIRQSL 346 (373)
T ss_pred HHHHHHHHHHHh------hhhhHHHHHHHHHHHHhC-----------HHHHHHHHHHHHHHH
Confidence 777776665422 235588999999999644 467777776665555
No 28
>smart00139 MyTH4 Domain in Myosin and Kinesin Tails. Domain present twice in myosin-VIIa, and also present in 3 other myosins.
Probab=33.07 E-value=2.3e+02 Score=23.42 Aligned_cols=90 Identities=14% Similarity=0.154 Sum_probs=55.3
Q ss_pred chHHHHHHHHHHHHhhccCcc---hhHHHHHHHHHHHHhccccCCCHHHHHHHHHcccCC-----cccCChhHHHHHHHH
Q psy10770 134 SQEIFCALFSLMFKIVNDEHS---GKVKSFMLDVLCPLITESDILSHELLDIILMNIVDP-----QKTQRKNAYLLAKEL 205 (253)
Q Consensus 134 ~d~Li~~lF~~ff~~v~~~~~---~~V~~~m~~Il~~vIeE~e~vp~~vld~IL~~l~~~-----~k~~~p~A~~LA~~v 205 (253)
....-.++|+.+.....+... ..-...+..|+...++ .+++-|.|.-|+++. +....--+|+|-.-.
T Consensus 18 ~~~~A~~iF~~Il~ymgd~~~~~~~~~~~l~~~i~~~~~~-----~~~LrDEiy~QLiKQtt~Np~~~s~~rgW~Ll~l~ 92 (144)
T smart00139 18 LQKEAVKIFKAILKFMGDLPLPKPDSHLDLVQFILQKGLA-----HPELRDEIYCQLIKQLTDNPSRQSEERGWELLYLC 92 (144)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHhc-----cHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHH
Confidence 345667888888877654222 2233455566666665 367788888777753 222233455554433
Q ss_pred HHH--chhhhhHHHHHHhhhhcccC
Q psy10770 206 IVK--TNDTLEPYIQNLTRLANAVF 228 (253)
Q Consensus 206 i~~--c~~kL~~~v~~~f~~~~~~~ 228 (253)
+.- .+..+.+|+..|++...-+.
T Consensus 93 ~~~FpPS~~l~~yL~~~l~~~~~~~ 117 (144)
T smart00139 93 TSLFPPSERLLPYLLQFLSRRADQP 117 (144)
T ss_pred HhHcCChHHHHHHHHHHHHhcCCCc
Confidence 332 35889999999999986553
No 29
>KOG2022|consensus
Probab=32.80 E-value=6.2e+02 Score=27.81 Aligned_cols=103 Identities=14% Similarity=0.186 Sum_probs=64.2
Q ss_pred chHHHHHHHHHHHHhhccC-cchhHHHHHHHH--HHHHhcccc-CCCHHHHHHHHHcccCCcccCChhHHHHHHHHHHHc
Q psy10770 134 SQEIFCALFSLMFKIVNDE-HSGKVKSFMLDV--LCPLITESD-ILSHELLDIILMNIVDPQKTQRKNAYLLAKELIVKT 209 (253)
Q Consensus 134 ~d~Li~~lF~~ff~~v~~~-~~~~V~~~m~~I--l~~vIeE~e-~vp~~vld~IL~~l~~~~k~~~p~A~~LA~~vi~~c 209 (253)
.++-+..+|++.+++-=.. +++-+..++..| ++.-..|-. .+++ .+..++.-+-.+ +.+-.|-.=-+++|+.|
T Consensus 502 ~~~~i~rl~~~~asik~S~~n~ql~~Tss~~igs~s~~l~e~P~~ln~-sl~~L~~~Lh~s--k~s~q~i~tl~tlC~~C 578 (982)
T KOG2022|consen 502 ESTWIPRLFETSASIKLSAPNPQLLSTSSDLIGSLSNWLGEHPMYLNP-SLPLLFQGLHNS--KESEQAISTLKTLCETC 578 (982)
T ss_pred hhHHHHHHHHhccccccccCChhHHHHHHHHHHHHHHHHhcCCcccCc-hHHHHHHHhcCc--hHHHHHHHHHHHHHHhh
Confidence 4567899999988864222 333333333322 333344433 3443 477777665422 23333444488999999
Q ss_pred hhhhhHHHHHHhhhhcccCCCCCCccccchh
Q psy10770 210 NDTLEPYIQNLTRLANAVFPNLGDIAPLGAM 240 (253)
Q Consensus 210 ~~kL~~~v~~~f~~~~~~~~~~~~~~~~~~~ 240 (253)
...|.||..+|.+-.-..+.+ |+..+-.-+
T Consensus 579 ~~~L~py~d~~~a~~~e~l~~-~~~~~S~~~ 608 (982)
T KOG2022|consen 579 PESLDPYADQFSAVCYEVLNK-SNAKDSDRL 608 (982)
T ss_pred hhhCchHHHHHHHHHHHHhcc-cccCchHHH
Confidence 999999999998877666777 777665544
No 30
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=32.30 E-value=4.6e+02 Score=25.76 Aligned_cols=130 Identities=16% Similarity=0.157 Sum_probs=77.6
Q ss_pred CCcchhHHHHHHHHHHhhhhhheeccCCCchHHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHhccccCCCHHHHHHHH
Q psy10770 105 KDPAFKRYFYLLENLAYVKSFNMCFELEDSQEIFCALFSLMFKIVNDEHSGKVKSFMLDVLCPLITESDILSHELLDIIL 184 (253)
Q Consensus 105 ~~p~f~~~~~lLesLA~vks~vl~~DL~d~d~Li~~lF~~ff~~v~~~~~~~V~~~m~~Il~~vIeE~e~vp~~vld~IL 184 (253)
+...+.+.+.++.++-+-.+..+ .++-+..+-+..+.+.+....+.....-..++..+|. ...||.+-+..++
T Consensus 147 ~~~~l~~ll~~l~nviKfn~~~l------~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~-y~~iP~~sl~~~i 219 (464)
T PF11864_consen 147 EESNLSDLLQFLVNVIKFNFNYL------DEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIIT-YGDIPSESLSPCI 219 (464)
T ss_pred hhhhHHHHHHHHHHHHhcCCCCC------CHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHH-cCcCChHHHHHHH
Confidence 44567788888887776665444 2345555666666665544444444555777777776 5688888888877
Q ss_pred HcccC--CcccCChhHHHHHHHHHH-HchhhhhHHHHHHhhhhcccCCCCCCcccc-chhhhh
Q psy10770 185 MNIVD--PQKTQRKNAYLLAKELIV-KTNDTLEPYIQNLTRLANAVFPNLGDIAPL-GAMEIF 243 (253)
Q Consensus 185 ~~l~~--~~k~~~p~A~~LA~~vi~-~c~~kL~~~v~~~f~~~~~~~~~~~~~~~~-~~~~~~ 243 (253)
.-+=. ...+-..++|+..+++|+ .++...=..++.++.+ -+-.+..|+.-+ ||..++
T Consensus 220 ~vLCsi~~~~~l~~~~w~~m~nL~~S~~g~~~i~~L~~iL~~--~~~~~~~~~~~lRGAv~~l 280 (464)
T PF11864_consen 220 EVLCSIVNSVSLCKPSWRTMRNLLKSHLGHSAIRTLCDILRS--PDPQNKRDINVLRGAVFFL 280 (464)
T ss_pred HHHhhHhcccccchhHHHHHHHHHcCccHHHHHHHHHHHHcc--cCccccccHHHHhhHHHHH
Confidence 44432 122456788998888884 3345555666666611 122334444433 666554
No 31
>PF05327 RRN3: RNA polymerase I specific transcription initiation factor RRN3; InterPro: IPR007991 This family consists of several eukaryotic proteins which are homologous to the Saccharomyces cerevisiae RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in the S. cerevisiae [] RNA polymerase I complex within the nucleolus. In mammalian cells, the phosphorylation state of Rrn3 regulates rDNA transcription by determining the steady-state concentration of the Rrn3 [].; PDB: 3TJ1_B.
Probab=30.66 E-value=3.3e+02 Score=27.63 Aligned_cols=63 Identities=14% Similarity=0.250 Sum_probs=30.0
Q ss_pred hhhheeccCCCchHHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHhccccCCCHHHHHHHHHcccCC
Q psy10770 123 KSFNMCFELEDSQEIFCALFSLMFKIVNDEHSGKVKSFMLDVLCPLITESDILSHELLDIILMNIVDP 190 (253)
Q Consensus 123 ks~vl~~DL~d~d~Li~~lF~~ff~~v~~~~~~~V~~~m~~Il~~vIeE~e~vp~~vld~IL~~l~~~ 190 (253)
+++|-.+|-. |..|+..+++.-+- +.+..+.......+..++.-...-=..+++.+..+|.++
T Consensus 61 ~~~Vs~Ld~~-~~~LV~ail~~~W~----~~~~~~v~~y~~Fl~~Lvsa~~~yl~~vl~~LV~~f~p~ 123 (563)
T PF05327_consen 61 SSCVSLLDSS-CKQLVEAILSLNWL----GRDEDFVEAYIQFLINLVSAQPKYLSPVLSMLVKNFIPP 123 (563)
T ss_dssp HHGGGGG-SC-CHHHHHHHHT-TGG----GS-HHHHHHHHHHHHHHHHH-GGGHHHHHHHHHHGGGS-
T ss_pred HHHHHHhhhH-HHHHHHHHHcCCCC----CCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccCC
Confidence 3444455544 66666655555221 223444544555555544444444555666666666654
No 32
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=30.50 E-value=5.1e+02 Score=27.46 Aligned_cols=94 Identities=16% Similarity=0.209 Sum_probs=61.0
Q ss_pred HHHHHHHHHhcCCCCCCCcchhHHHHHHHHHHhhhhhheeccCCCchHHHHHHHHHHHHhhccCcchhHHHHHHHHHHHH
Q psy10770 89 TIFLFLIKQLNGLKDPKDPAFKRYFYLLENLAYVKSFNMCFELEDSQEIFCALFSLMFKIVNDEHSGKVKSFMLDVLCPL 168 (253)
Q Consensus 89 dIF~l~v~~l~~L~d~~~p~f~~~~~lLesLA~vks~vl~~DL~d~d~Li~~lF~~ff~~v~~~~~~~V~~~m~~Il~~v 168 (253)
++.+..-..+.-=.+++.| .+-+..|.++-+.+ +-|.|...+++...|++.+..+. .--++|+.-...|+..+
T Consensus 46 ~flr~vn~IL~~Kk~~si~--dRil~fl~~f~~Y~----~~~dpeg~~~V~~~~~h~lRg~e-skdk~VR~r~lqila~~ 118 (885)
T COG5218 46 EFLRVVNTILACKKNPSIP--DRILSFLKRFFEYD----MPDDPEGEELVAGTFYHLLRGTE-SKDKKVRKRSLQILALL 118 (885)
T ss_pred HHHHHHHHhhccccCCCcH--HHHHHHHHHHHHhc----CCCChhhhHHHHHHHHHHHhccc-CcchhHHHHHHHHHHHH
Confidence 3334444444433445555 56666776666543 66766667899999999887762 34468998888888887
Q ss_pred hccccCCCHHHHHHHHHcccC
Q psy10770 169 ITESDILSHELLDIILMNIVD 189 (253)
Q Consensus 169 IeE~e~vp~~vld~IL~~l~~ 189 (253)
.+-...|...+-..++..+.+
T Consensus 119 ~d~v~eIDe~l~N~L~ekl~~ 139 (885)
T COG5218 119 SDVVREIDEVLANGLLEKLSE 139 (885)
T ss_pred HHhcchHHHHHHHHHHHHHHH
Confidence 777666666666655554443
No 33
>KOG1060|consensus
Probab=30.36 E-value=7.5e+02 Score=27.00 Aligned_cols=156 Identities=15% Similarity=0.185 Sum_probs=94.1
Q ss_pred hhhHHHHHHHhhhhhhcCCCcchHHHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHHHhcCCCCCCCcchhH--HHHH
Q psy10770 38 QQYIPLALHIAEDHFLSHESKDVQLLIACCIADVLRVYAPEAPYKDPDQVKTIFLFLIKQLNGLKDPKDPAFKR--YFYL 115 (253)
Q Consensus 38 ~sl~~~~~~Lv~~~LL~HkD~~Vr~~vAcCLadIlRI~APdaPy~d~~qLkdIF~l~v~~l~~L~d~~~p~f~~--~~~l 115 (253)
+....++++|++ || -.+++||-.|-|||+-|-- .-+.+|.=.++.|--- +++|+--+ -..|
T Consensus 318 ~~~~~i~kaLvr--LL-rs~~~vqyvvL~nIa~~s~------------~~~~lF~P~lKsFfv~--ssDp~~vk~lKlei 380 (968)
T KOG1060|consen 318 NQVTKIAKALVR--LL-RSNREVQYVVLQNIATISI------------KRPTLFEPHLKSFFVR--SSDPTQVKILKLEI 380 (968)
T ss_pred HHHHHHHHHHHH--HH-hcCCcchhhhHHHHHHHHh------------cchhhhhhhhhceEee--cCCHHHHHHHHHHH
Confidence 455667888887 33 3468899888888887643 2245555434443211 23332222 2345
Q ss_pred HHHHHhhhhhheeccCCCchHHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHhccccCCCHHHHHHHHHcccCCcccCC
Q psy10770 116 LENLAYVKSFNMCFELEDSQEIFCALFSLMFKIVNDEHSGKVKSFMLDVLCPLITESDILSHELLDIILMNIVDPQKTQR 195 (253)
Q Consensus 116 LesLA~vks~vl~~DL~d~d~Li~~lF~~ff~~v~~~~~~~V~~~m~~Il~~vIeE~e~vp~~vld~IL~~l~~~~k~~~ 195 (253)
|.+|++-.+ +.++|+.|-.-|+..+- .+...-..-+..+=.-...++..+++-++.-+...+....
T Consensus 381 Ls~La~esn-------------i~~ILrE~q~YI~s~d~-~faa~aV~AiGrCA~~~~sv~~tCL~gLv~Llsshde~Vv 446 (968)
T KOG1060|consen 381 LSNLANESN-------------ISEILRELQTYIKSSDR-SFAAAAVKAIGRCASRIGSVTDTCLNGLVQLLSSHDELVV 446 (968)
T ss_pred HHHHhhhcc-------------HHHHHHHHHHHHhcCch-hHHHHHHHHHHHHHHhhCchhhHHHHHHHHHHhcccchhH
Confidence 666664332 34455555555555444 3444444444555555567889999999855555655666
Q ss_pred hhHHHHHHHHHHHchhhhhHHHHHHhhhh
Q psy10770 196 KNAYLLAKELIVKTNDTLEPYIQNLTRLA 224 (253)
Q Consensus 196 p~A~~LA~~vi~~c~~kL~~~v~~~f~~~ 224 (253)
-+|-..-+.++++.+.+-...+.+.+.-.
T Consensus 447 ~eaV~vIk~Llq~~p~~h~~ii~~La~ll 475 (968)
T KOG1060|consen 447 AEAVVVIKRLLQKDPAEHLEILFQLARLL 475 (968)
T ss_pred HHHHHHHHHHHhhChHHHHHHHHHHHHHh
Confidence 77777888888888877777777766543
No 34
>cd07958 Anticodon_Ia_Leu_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial leucyl tRNA synthetases. This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes bacterial and eukaryotic mitochondrial members, as well as LeuRS from the archaeal Halobacteria. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA.
Probab=30.07 E-value=1.7e+02 Score=21.83 Aligned_cols=27 Identities=15% Similarity=0.271 Sum_probs=23.0
Q ss_pred hHHHHHHHHHHHHhhcCCCCCCCChHHH
Q psy10770 60 VQLLIACCIADVLRVYAPEAPYKDPDQV 87 (253)
Q Consensus 60 Vr~~vAcCLadIlRI~APdaPy~d~~qL 87 (253)
++..+.-|+..+.++.+|=.|+.. +++
T Consensus 87 ~~~~~~~~l~~~~~lL~P~~P~~a-eei 113 (117)
T cd07958 87 HAAVLREALETLVLLLAPFAPHIA-EEL 113 (117)
T ss_pred hHHHHHHHHHHHHHHHcccchHHH-HHH
Confidence 677788889999999999999996 554
No 35
>KOG3674|consensus
Probab=29.90 E-value=73 Score=32.58 Aligned_cols=49 Identities=27% Similarity=0.469 Sum_probs=37.1
Q ss_pred CCCCCCCChHHHHHHHHHHHHHhc---------CCCCCCCc------chhHHHHHHHHHHhhhhh
Q psy10770 76 APEAPYKDPDQVKTIFLFLIKQLN---------GLKDPKDP------AFKRYFYLLENLAYVKSF 125 (253)
Q Consensus 76 APdaPy~d~~qLkdIF~l~v~~l~---------~L~d~~~p------~f~~~~~lLesLA~vks~ 125 (253)
+|-+-|+. ..++|||++|..-|. .|.+|+.. -|....-+++.++.||+-
T Consensus 12 ~p~~~fs~-~~~~d~~~lF~k~F~y~kpl~nswqlp~Pdq~l~~e~yeF~a~~~l~~qln~vk~k 75 (696)
T KOG3674|consen 12 NPVNLFSE-KEIKDYYNLFIKDFNYCKPLPNSWQLPNPDQALFSEFYEFSAQTNLLTQLNMVKRK 75 (696)
T ss_pred CCccccCc-chHHHHHHHHHHhcccCCcCCCcccCCCchhhhhhhhhhHHHHhhHHHHHHHHHHH
Confidence 56667885 899999999999884 35566643 355566799999999973
No 36
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=29.82 E-value=1.6e+02 Score=22.85 Aligned_cols=61 Identities=11% Similarity=0.163 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHhccccCCCHHHHHHHHHcccCCcccCChhHHHHHHHHHHHchhhhhHHHHH
Q psy10770 158 KSFMLDVLCPLITESDILSHELLDIILMNIVDPQKTQRKNAYLLAKELIVKTNDTLEPYIQN 219 (253)
Q Consensus 158 ~~~m~~Il~~vIeE~e~vp~~vld~IL~~l~~~~k~~~p~A~~LA~~vi~~c~~kL~~~v~~ 219 (253)
...|.+|...+ .+...-+.++++.|...+-.++-..---|-.+-+.++++|++.....++.
T Consensus 18 ~~~i~~i~d~~-~~~~~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~ 78 (115)
T cd00197 18 WPLIMEICDLI-NETNVGPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVAS 78 (115)
T ss_pred HHHHHHHHHHH-HCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHH
Confidence 35555555544 55566788899999988766544444556778888999999888877754
No 37
>PF14000 Packaging_FI: DNA packaging protein FI
Probab=29.73 E-value=41 Score=27.86 Aligned_cols=18 Identities=17% Similarity=-0.020 Sum_probs=16.1
Q ss_pred ChhHHHHhHHHHHHHHhh
Q psy10770 12 KHNYLTFTPQTLAHTLQG 29 (253)
Q Consensus 12 ~~~eLlkrLk~L~~~L~~ 29 (253)
+++++++||+.|...|-+
T Consensus 1 tKee~l~RL~eLa~~LGR 18 (125)
T PF14000_consen 1 TKEENLARLRELAAQLGR 18 (125)
T ss_pred ChHHHHHHHHHHHHHhCc
Confidence 578999999999999977
No 38
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=28.26 E-value=6.8e+02 Score=26.96 Aligned_cols=124 Identities=10% Similarity=0.191 Sum_probs=74.0
Q ss_pred cchhHHHHHHHHHHhhhhhhe-eccCCCchHHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHhccccCC----------
Q psy10770 107 PAFKRYFYLLENLAYVKSFNM-CFELEDSQEIFCALFSLMFKIVNDEHSGKVKSFMLDVLCPLITESDIL---------- 175 (253)
Q Consensus 107 p~f~~~~~lLesLA~vks~vl-~~DL~d~d~Li~~lF~~ff~~v~~~~~~~V~~~m~~Il~~vIeE~e~v---------- 175 (253)
.....-..||....+||..-= ++.+ ++-..+.+..+.+|..-.++....+..-++.||-.++.|+..-
T Consensus 137 ~ll~~llkLL~~c~Kv~~NR~~Ll~~-~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~IiE~ll~ea~~~~~~~~~~~~~ 215 (802)
T PF13764_consen 137 ELLQVLLKLLRYCCKVKVNRRALLEL-NALNRLLSVLNRALQANQNSSQAEIAEQLLEIIESLLSEANSSSSSESKSSSS 215 (802)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHc-CCHHHHHHHHHHHHhCccccccchHHHHHHHHHHHHHHHHhhhhhhhcccccc
Confidence 455666777777777765432 1333 4556677777777776444445566677777777777776631
Q ss_pred -------CHHHHHHHHHcccCCcccCChhHHHHHHHHHH----HchhhhhHHHHHHhhhhcccCCCCCC
Q psy10770 176 -------SHELLDIILMNIVDPQKTQRKNAYLLAKELIV----KTNDTLEPYIQNLTRLANAVFPNLGD 233 (253)
Q Consensus 176 -------p~~vld~IL~~l~~~~k~~~p~A~~LA~~vi~----~c~~kL~~~v~~~f~~~~~~~~~~~~ 233 (253)
..+-++.+|.++-.+....++.-.+...+||- ...+++ .++.+||...+ +|+++.+
T Consensus 216 ~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m-~~Lv~~F~p~l-~f~~~D~ 282 (802)
T PF13764_consen 216 LSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKM-DALVEHFKPYL-DFDKFDE 282 (802)
T ss_pred ccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHH-HHHHHHHHHhc-Chhhccc
Confidence 45568888877776654444444443333332 222333 45666676654 6777754
No 39
>PF05997 Nop52: Nucleolar protein,Nop52; InterPro: IPR010301 Nop52 is believed to be involved in the generation of 28S rRNA [].; GO: 0006364 rRNA processing, 0030688 preribosome, small subunit precursor
Probab=27.68 E-value=4.3e+02 Score=23.35 Aligned_cols=165 Identities=13% Similarity=0.069 Sum_probs=96.9
Q ss_pred HHhHHHHHHHHhhcCCCchhhhhhHHHHHHHhhhhhhcCCC-cchHHHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHH
Q psy10770 17 TFTPQTLAHTLQGMGQDEGMYQQYIPLALHIAEDHFLSHES-KDVQLLIACCIADVLRVYAPEAPYKDPDQVKTIFLFLI 95 (253)
Q Consensus 17 lkrLk~L~~~L~~~dQ~~~~~~sl~~~~~~Lv~~~LL~HkD-~~Vr~~vAcCLadIlRI~APdaPy~d~~qLkdIF~l~v 95 (253)
-+-|+.|.+.|+.-.+.. +...+..+-+-|-=- +=|+| +-||-=+|..|+++++.+.++. ..-.=++-.|..+.
T Consensus 18 ~~al~~l~~~l~~~~~~~-~~~~~~kLWKGLfy~--mWmsDkpl~Q~~la~~la~l~~~~~~~~--~~~~f~~~f~~tm~ 92 (217)
T PF05997_consen 18 DRALKSLRKWLSKRSQLL-TELDMLKLWKGLFYC--MWMSDKPLVQEELAEELASLIHSFPSEK--AALLFLKAFWETMR 92 (217)
T ss_pred HHHHHHHHHHHHhccccC-CHHHHHHHHHHHHHH--HHhcCCchhHHHHHHHHHHHHHhhcChH--HHHHHHHHHHHHHH
Confidence 345677777777743322 334445555554321 22334 4588899999999999977664 11123455666666
Q ss_pred HHhcCCCCCCCcchhHHHHHHHHHHhhhhhheeccCCCchHHHHHHHHHHHHhhc-c--CcchhHHHHHHHHHHHHhccc
Q psy10770 96 KQLNGLKDPKDPAFKRYFYLLENLAYVKSFNMCFELEDSQEIFCALFSLMFKIVN-D--EHSGKVKSFMLDVLCPLITES 172 (253)
Q Consensus 96 ~~l~~L~d~~~p~f~~~~~lLesLA~vks~vl~~DL~d~d~Li~~lF~~ff~~v~-~--~~~~~V~~~m~~Il~~vIeE~ 172 (253)
+.+.|+.. =- -.-||+|-+.---.++..+-.-.-..+++.+.-+.+.+.+= + ..|..+..++.||-..=++..
T Consensus 93 rEW~~ID~---~R-~DKf~~LvR~~~~~~~~~l~~~~w~~~~v~~~~~~l~~~~l~~~~~~p~Gl~~H~~Di~ldEL~k~ 168 (217)
T PF05997_consen 93 REWDGIDR---LR-MDKFLMLVRRFLRQSFRFLKKNGWDKELVEEFNEILSETPLNPNDQVPNGLRYHFADIFLDELEKV 168 (217)
T ss_pred HHHcccHH---HH-HHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHccCCCcCCCchhHHHHHHHHHHHHHHHH
Confidence 67777643 11 12345555555556666654443234666666666666551 1 156677788887765543332
Q ss_pred c----------CCCHHHHHHHHHcccCC
Q psy10770 173 D----------ILSHELLDIILMNIVDP 190 (253)
Q Consensus 173 e----------~vp~~vld~IL~~l~~~ 190 (253)
. .+|.+-+..++.+++.-
T Consensus 169 ~~~~~~~~e~~~~~~~~~~~ll~PF~~~ 196 (217)
T PF05997_consen 169 GGSESEDEEEENLPAEPLLLLLEPFVKL 196 (217)
T ss_pred hcccccchhcccCCHHHHHHHHHHHHHH
Confidence 2 37888888888887753
No 40
>smart00707 RPEL Repeat in Drosophila CG10860, human KIAA0680 and C. elegans F26H9.2.
Probab=27.57 E-value=39 Score=20.56 Aligned_cols=17 Identities=18% Similarity=0.028 Sum_probs=13.0
Q ss_pred hhhhhccCCChhHHHHh
Q psy10770 3 LIEHSFSRSKHNYLTFT 19 (253)
Q Consensus 3 ~~~~~~~~~~~~eLlkr 19 (253)
|-.++-.||+.+||++|
T Consensus 3 L~~kl~~RP~~eeLv~r 19 (26)
T smart00707 3 LNRKLSQRPTREELEER 19 (26)
T ss_pred HHHHHHcCCCHHHHHHc
Confidence 44566789999999876
No 41
>KOG2171|consensus
Probab=27.52 E-value=9e+02 Score=27.03 Aligned_cols=176 Identities=19% Similarity=0.191 Sum_probs=0.0
Q ss_pred hhhHHHHHHHhhhhhhcCCCcchHHHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHHHhcCCCCCCCcchhHHHHHHH
Q psy10770 38 QQYIPLALHIAEDHFLSHESKDVQLLIACCIADVLRVYAPEAPYKDPDQVKTIFLFLIKQLNGLKDPKDPAFKRYFYLLE 117 (253)
Q Consensus 38 ~sl~~~~~~Lv~~~LL~HkD~~Vr~~vAcCLadIlRI~APdaPy~d~~qLkdIF~l~v~~l~~L~d~~~p~f~~~~~lLe 117 (253)
.+.+.-.+..+=..+.+-.-+-||--.|=-+|+|-|---|+ +--++.+|++.+.. +++.+.-.-.++||-
T Consensus 74 ~e~~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e-------~WPell~~L~q~~~---S~~~~~rE~al~il~ 143 (1075)
T KOG2171|consen 74 AEVQQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPE-------KWPELLQFLFQSTK---SPNPSLRESALLILS 143 (1075)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhcccc-------chHHHHHHHHHHhc---CCCcchhHHHHHHHH
Q ss_pred HHHhhhhhheeccCCCchHHHHHHHHHHHHhhcc------------------------CcchhHHHHHHHHHHHHhcccc
Q psy10770 118 NLAYVKSFNMCFELEDSQEIFCALFSLMFKIVND------------------------EHSGKVKSFMLDVLCPLITESD 173 (253)
Q Consensus 118 sLA~vks~vl~~DL~d~d~Li~~lF~~ff~~v~~------------------------~~~~~V~~~m~~Il~~vIeE~e 173 (253)
++.+.. -..+-..-+-+..||...+.-.+. ++-..+...|..+|..+|+..+
T Consensus 144 s~~~~~----~~~~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d 219 (1075)
T KOG2171|consen 144 SLPETF----GNTLQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGD 219 (1075)
T ss_pred hhhhhh----ccccchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccc
Q ss_pred C---------------CCHHHHHHHHHcccC------CcccCChhHHHHHHHHHHHchhhhhHHHHHHhhhhcccC
Q psy10770 174 I---------------LSHELLDIILMNIVD------PQKTQRKNAYLLAKELIVKTNDTLEPYIQNLTRLANAVF 228 (253)
Q Consensus 174 ~---------------vp~~vld~IL~~l~~------~~k~~~p~A~~LA~~vi~~c~~kL~~~v~~~f~~~~~~~ 228 (253)
. ..+.++...|.+++. .+|.-++..+.+|=+++..+++. .|.-+....+.+-.+
T Consensus 220 ~~~a~~~l~~l~El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~-Ap~~~k~~~~~~~~l 294 (1075)
T KOG2171|consen 220 DDAAKSALEALIELLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEY-APAMCKKLALLGHTL 294 (1075)
T ss_pred hHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHh-hHHHhhhchhhhccH
No 42
>PF07781 Reovirus_Mu2: Reovirus minor core protein Mu-2; InterPro: IPR012494 This family represents the Reovirus core protein Mu-2. Mu-2 is a microtubule associated protein and is thought to play a key role in the formation and structural organisation of reovirus inclusion bodies [, ]. ; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=27.15 E-value=1e+02 Score=32.66 Aligned_cols=148 Identities=14% Similarity=0.202 Sum_probs=84.0
Q ss_pred HhhcCCCCCCCChHHHHHHHHHHHHHhcCCCCCCCcchhHHHHHHHHHHhhhh------hheeccCCCchHHHHHHHHHH
Q psy10770 72 LRVYAPEAPYKDPDQVKTIFLFLIKQLNGLKDPKDPAFKRYFYLLENLAYVKS------FNMCFELEDSQEIFCALFSLM 145 (253)
Q Consensus 72 lRI~APdaPy~d~~qLkdIF~l~v~~l~~L~d~~~p~f~~~~~lLesLA~vks------~vl~~DL~d~d~Li~~lF~~f 145 (253)
.||+-|++=.+++ .++|.-+|.|+++ +++.++.+-. ..+-.+..++++.+.+||..|
T Consensus 434 ~rI~~~~~vvDSD---------------d~GDsL~PTFE~~--l~~~~~~Ld~~d~~~~~~~~~~~~~~~~~~~~my~~F 496 (735)
T PF07781_consen 434 TRIFPPNTVVDSD---------------DVGDSLDPTFEEQ--LLTEWAALDPLDDLIAWALATGLIDDDDALTHMYPIF 496 (735)
T ss_pred ceeecccceeccc---------------ccccccCchHHHH--HHHHHHccCchHHHHHHhhcCCCcCchhHHHHHHHHH
Confidence 4677777777663 4678888999998 7777776654 233455566788889999999
Q ss_pred HHhhccCcchhHHHHHHHHHHHHhcc-ccCCCHHHHHH-----HHHcccC---------CcccCChhHHHHHHHHHHHch
Q psy10770 146 FKIVNDEHSGKVKSFMLDVLCPLITE-SDILSHELLDI-----ILMNIVD---------PQKTQRKNAYLLAKELIVKTN 210 (253)
Q Consensus 146 f~~v~~~~~~~V~~~m~~Il~~vIeE-~e~vp~~vld~-----IL~~l~~---------~~k~~~p~A~~LA~~vi~~c~ 210 (253)
....++-....-+..+..+..+-..= .-+-+.|+|+. ++...++ ..+..-...+|++=+=|.++-
T Consensus 497 l~Ly~~~ltP~~r~~~~~~~~~gR~LtfaHaD~E~LnAn~~~~l~Rc~I~~~~e~NIl~R~~RVGGv~FQl~Ls~CYkm~ 576 (735)
T PF07781_consen 497 LRLYKSLLTPAARARYPERSQEGRSLTFAHADSEFLNANWPGRLMRCYIPFDEEVNILIRPGRVGGVLFQLLLSRCYKMM 576 (735)
T ss_pred HHHHHHHhCHHHHhhhhhhhhcceEEEEeecCHHHHhCCCcceEEEEeecccchhhheeccCccccchHHHHHHHHHHHh
Confidence 99987655554444444443321100 00223444432 2222221 123345778899888888775
Q ss_pred hh------hhHHHHHHhhhhcccCCCCCCccc
Q psy10770 211 DT------LEPYIQNLTRLANAVFPNLGDIAP 236 (253)
Q Consensus 211 ~k------L~~~v~~~f~~~~~~~~~~~~~~~ 236 (253)
.. ..-.+++.|.--+-.-...+++-|
T Consensus 577 Atsa~~~P~g~~lk~Lf~PWL~~a~l~~~~~~ 608 (735)
T PF07781_consen 577 ATSAPPMPFGLLLKSLFGPWLEAAPLLGPLTP 608 (735)
T ss_pred cCCCCCccHHHHHHHhhhHHhhcccccccccc
Confidence 32 233444444443333344444433
No 43
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=26.55 E-value=91 Score=29.39 Aligned_cols=36 Identities=25% Similarity=0.442 Sum_probs=31.5
Q ss_pred HHHHHHH-HHHHHhcCCCCCCCcchhHHHHHHHHHHh
Q psy10770 86 QVKTIFL-FLIKQLNGLKDPKDPAFKRYFYLLENLAY 121 (253)
Q Consensus 86 qLkdIF~-l~v~~l~~L~d~~~p~f~~~~~lLesLA~ 121 (253)
.++-.++ ++..-++||.|.++..|.+-..+|+++..
T Consensus 131 ~L~p~l~~li~slLpGLede~sE~~~~~~~ll~~l~~ 167 (307)
T PF04118_consen 131 ALRPCLKGLILSLLPGLEDEGSEFFDRTLKLLDKLKE 167 (307)
T ss_pred HHHHHHHHHHHHhccccccCCchHHHHHHHHHHHHHH
Confidence 5777777 77778999999999999999999999984
No 44
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=25.61 E-value=2.3e+02 Score=22.97 Aligned_cols=73 Identities=8% Similarity=0.058 Sum_probs=50.6
Q ss_pred cchhHHHHHHHHHHHHhccccCCCHHHHHHHHHcccCCcccCChhHHHHHHHHHHHchhhhhHHHHHH-hhhhcc
Q psy10770 153 HSGKVKSFMLDVLCPLITESDILSHELLDIILMNIVDPQKTQRKNAYLLAKELIVKTNDTLEPYIQNL-TRLANA 226 (253)
Q Consensus 153 ~~~~V~~~m~~Il~~vIeE~e~vp~~vld~IL~~l~~~~k~~~p~A~~LA~~vi~~c~~kL~~~v~~~-f~~~~~ 226 (253)
.+..=...+.+| ...|...+.-|.+.+..|-..+..++....--|-.+-..++++|..++...++.. |-+.++
T Consensus 13 l~~~dw~~~l~i-cD~i~~~~~~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~ 86 (133)
T smart00288 13 LLEEDWELILEI-CDLINSTPDGPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELV 86 (133)
T ss_pred CCCcCHHHHHHH-HHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHH
Confidence 333334555555 4456777888999999999888876666666677888888899998887766543 444433
No 45
>PF12825 DUF3818: Domain of unknown function in PX-proteins (DUF3818); InterPro: IPR024554 The function of this domain is not known, but it is almost always found C-terminal to a PX-domain (IPR001683 from INTERPRO).
Probab=25.42 E-value=6e+02 Score=24.35 Aligned_cols=152 Identities=11% Similarity=0.158 Sum_probs=81.4
Q ss_pred HHHHhhcCCCCCCCChHHHHHHHHHH---HHHhcCC------CCCCCcchhHHHHHHHHHHhhhhhheeccC---CCchH
Q psy10770 69 ADVLRVYAPEAPYKDPDQVKTIFLFL---IKQLNGL------KDPKDPAFKRYFYLLENLAYVKSFNMCFEL---EDSQE 136 (253)
Q Consensus 69 adIlRI~APdaPy~d~~qLkdIF~l~---v~~l~~L------~d~~~p~f~~~~~lLesLA~vks~vl~~DL---~d~d~ 136 (253)
+=|||=..+.+..+ ++++..|++-- -..-.+- .+.+..+|....-+|.-+...|==-.+..+ |.--+
T Consensus 160 ~~IL~~~~~~p~L~-~~~~~~v~~sy~~~~~~~~~~~~~~~~~~~~a~lf~~lk~yl~l~~r~RDk~~~~~l~~e~~~~q 238 (341)
T PF12825_consen 160 VAILRSSDIEPKLS-PEQLQRVLESYKAWKNAVESVPDDDGEENEDAWLFSDLKEYLKLYLRKRDKEQMIQLWCEPELTQ 238 (341)
T ss_pred HHHHhCCCCCCCCC-HHHHHHHHHHHHHHHHhhhccccCCCccchhhHHHHHHHHHHHHHHHHhhHHHHHHHHcChhHHH
Confidence 44788766566666 48898888742 2333222 122234555555555554444422222222 22234
Q ss_pred HHHHHHHHHHHhhcc--------CcchhHHHHHHHHHHH---Hhcc-ccCCCHHHHHHHHHcccCCcccCChhHHHHHHH
Q psy10770 137 IFCALFSLMFKIVND--------EHSGKVKSFMLDVLCP---LITE-SDILSHELLDIILMNIVDPQKTQRKNAYLLAKE 204 (253)
Q Consensus 137 Li~~lF~~ff~~v~~--------~~~~~V~~~m~~Il~~---vIeE-~e~vp~~vld~IL~~l~~~~k~~~p~A~~LA~~ 204 (253)
++.+++..||..+.. ++=...+..|.|.+.. +.++ ...=|.+.++.+. .++..+ ...=|+..-+
T Consensus 239 llkd~v~ifYepl~rv~k~a~l~~~l~d~q~Fi~DlI~~~~~~~~~~~~~~~~~~V~~~v-~Ll~rH---~~~~y~FvH~ 314 (341)
T PF12825_consen 239 LLKDLVTIFYEPLVRVHKAADLSEALSDFQKFIDDLIKLVEKLRNGSGSSDPFPSVEDFV-DLLDRH---EQSFYKFVHE 314 (341)
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhcccccCCchhHHHHHH-HHHHHH---HHHHHHHHHH
Confidence 555666666655543 1223445555555432 2221 1123556666655 444333 3678899999
Q ss_pred HHHHchhhhhHHHHHHhhhhcc
Q psy10770 205 LIVKTNDTLEPYIQNLTRLANA 226 (253)
Q Consensus 205 vi~~c~~kL~~~v~~~f~~~~~ 226 (253)
|..+|.+ +--.+.+++.+.+.
T Consensus 315 v~~~d~~-lf~~l~~W~~~~l~ 335 (341)
T PF12825_consen 315 VHKNDPE-LFDELIAWIEKILK 335 (341)
T ss_pred HHHcChH-HHHHHHHHHHHHHH
Confidence 9999988 77777777766643
No 46
>PLN02959 aminoacyl-tRNA ligase
Probab=24.47 E-value=1.5e+02 Score=32.60 Aligned_cols=28 Identities=18% Similarity=0.132 Sum_probs=23.2
Q ss_pred hHHHHHHHHHHHHhhcCCCCCCCChHHHH
Q psy10770 60 VQLLIACCIADVLRVYAPEAPYKDPDQVK 88 (253)
Q Consensus 60 Vr~~vAcCLadIlRI~APdaPy~d~~qLk 88 (253)
.+..+.-||-.++|+.||=+||.. +++-
T Consensus 847 ~~~~L~~vl~~~l~LLaP~~Pfia-EEiW 874 (1084)
T PLN02959 847 NRDLVWRFMDVQTRLITPICPHYA-EHVW 874 (1084)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHH-HHHH
Confidence 566778899999999999999996 5543
No 47
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=24.32 E-value=7.1e+02 Score=24.72 Aligned_cols=67 Identities=22% Similarity=0.191 Sum_probs=42.3
Q ss_pred hhhcCCCcchHHHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHHHhcCCCCCCCcchhHHHHHHHHHHhhh
Q psy10770 51 HFLSHESKDVQLLIACCIADVLRVYAPEAPYKDPDQVKTIFLFLIKQLNGLKDPKDPAFKRYFYLLENLAYVK 123 (253)
Q Consensus 51 ~LL~HkD~~Vr~~vAcCLadIlRI~APdaPy~d~~qLkdIF~l~v~~l~~L~d~~~p~f~~~~~lLesLA~vk 123 (253)
..|.|.++.||.+++-.|..+.|- ++.-..- -.=.+++..++..+ .+++...-+....+|..++..+
T Consensus 84 ~gL~h~~~~Vr~l~l~~l~~~~~~--~~~~~~~-~~~~~l~~~i~~~L---~~~d~~Va~~A~~~L~~l~~~~ 150 (503)
T PF10508_consen 84 RGLTHPSPKVRRLALKQLGRIARH--SEGAAQL-LVDNELLPLIIQCL---RDPDLSVAKAAIKALKKLASHP 150 (503)
T ss_pred HHhcCCCHHHHHHHHHHHHHHhcC--CHHHHHH-hcCccHHHHHHHHH---cCCcHHHHHHHHHHHHHHhCCc
Confidence 356799999999988876666552 2210000 00034566655555 5777777788888888888654
No 48
>cd07959 Anticodon_Ia_Leu_AEc Anticodon-binding domain of archaeal and eukaryotic cytoplasmic leucyl tRNA synthetases. This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes archaeal and eukaryotic cytoplasmic members. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA.
Probab=23.03 E-value=2.2e+02 Score=21.31 Aligned_cols=27 Identities=26% Similarity=0.263 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHHHhhcCCCCCCCChHHH
Q psy10770 60 VQLLIACCIADVLRVYAPEAPYKDPDQV 87 (253)
Q Consensus 60 Vr~~vAcCLadIlRI~APdaPy~d~~qL 87 (253)
.+..+.-++..++|+.+|=.|+.. +++
T Consensus 87 ~~~~~~~~l~~~~~lL~P~~P~~a-eei 113 (117)
T cd07959 87 NKDLLRRFIEVWTRLLAPFAPHLA-EEI 113 (117)
T ss_pred hHHHHHHHHHHHHHHHcCcchHhH-HHH
Confidence 445677889999999999999996 544
No 49
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=22.87 E-value=78 Score=19.12 Aligned_cols=21 Identities=19% Similarity=0.284 Sum_probs=16.4
Q ss_pred hhcCCCcchHHHHHHHHHHHH
Q psy10770 52 FLSHESKDVQLLIACCIADVL 72 (253)
Q Consensus 52 LL~HkD~~Vr~~vAcCLadIl 72 (253)
+|++.|.+++..++.+|..|.
T Consensus 20 ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 20 LLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred HHcCCCHHHHHHHHHHHHHHc
Confidence 455778999999988887764
No 50
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=22.65 E-value=4.6e+02 Score=21.93 Aligned_cols=140 Identities=17% Similarity=0.190 Sum_probs=79.2
Q ss_pred CcchHHHHHHHHHHHHhhcCCC-CCCCChHHHHHHHHHHHHHhcCCCCCCCcchhHHHHHHHHHHh-----hhh---hhe
Q psy10770 57 SKDVQLLIACCIADVLRVYAPE-APYKDPDQVKTIFLFLIKQLNGLKDPKDPAFKRYFYLLENLAY-----VKS---FNM 127 (253)
Q Consensus 57 D~~Vr~~vAcCLadIlRI~APd-aPy~d~~qLkdIF~l~v~~l~~L~d~~~p~f~~~~~lLesLA~-----vks---~vl 127 (253)
|+.||.-+..|++|+.--|..- -||. ..+| ..|.|++..-=.+...+|..|.. +|. ..+
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve~~~-----~~l~-------~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~ 68 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVEPYL-----PNLY-------KCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRI 68 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHHhHH-----HHHH-------HHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHH
Confidence 5679999999999998876211 1222 2222 34456543333344444444432 121 111
Q ss_pred eccCCCchHHHHHHHHHHHHhhccC-cchhHHHHHHHHHHHHhcccc-----CCCH----HHHHHHHHcccCCcccCChh
Q psy10770 128 CFELEDSQEIFCALFSLMFKIVNDE-HSGKVKSFMLDVLCPLITESD-----ILSH----ELLDIILMNIVDPQKTQRKN 197 (253)
Q Consensus 128 ~~DL~d~d~Li~~lF~~ff~~v~~~-~~~~V~~~m~~Il~~vIeE~e-----~vp~----~vld~IL~~l~~~~k~~~p~ 197 (253)
+.-+.|.++-|.+.=+.||.-+... .+..+.+.+.+++..+=+..+ ..+. .+.+.++..+-+ ...
T Consensus 69 l~~l~D~~~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~~i~~-----d~~ 143 (178)
T PF12717_consen 69 LKLLVDENPEIRSLARSFFSELLKKRNPNIIYNNFPELISSLNNCYEHPVYGPLSREKRKKIYKFLLDFIDK-----DKQ 143 (178)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhCccccccccccCHHHHHHHHHHHHHHcCc-----HHH
Confidence 2223456677788888888777665 777788888888887554322 2333 445555533332 345
Q ss_pred HHHHHHHHHHHchhhh
Q psy10770 198 AYLLAKELIVKTNDTL 213 (253)
Q Consensus 198 A~~LA~~vi~~c~~kL 213 (253)
..++.+++|++-...-
T Consensus 144 ~~~l~~kl~~~~~~~~ 159 (178)
T PF12717_consen 144 KESLVEKLCQRFLNAV 159 (178)
T ss_pred HHHHHHHHHHHHHHHc
Confidence 6677777777655443
No 51
>PF05327 RRN3: RNA polymerase I specific transcription initiation factor RRN3; InterPro: IPR007991 This family consists of several eukaryotic proteins which are homologous to the Saccharomyces cerevisiae RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in the S. cerevisiae [] RNA polymerase I complex within the nucleolus. In mammalian cells, the phosphorylation state of Rrn3 regulates rDNA transcription by determining the steady-state concentration of the Rrn3 [].; PDB: 3TJ1_B.
Probab=22.61 E-value=6.7e+02 Score=25.43 Aligned_cols=96 Identities=15% Similarity=0.134 Sum_probs=51.6
Q ss_pred CChhHHHHhHHHHHHHHhhcCCCchhhhhhHHHHHHHhhhhhhcCCCcchHHHHHHHHHHHHhhcCCCCCCCChHHHHHH
Q psy10770 11 SKHNYLTFTPQTLAHTLQGMGQDEGMYQQYIPLALHIAEDHFLSHESKDVQLLIACCIADVLRVYAPEAPYKDPDQVKTI 90 (253)
Q Consensus 11 ~~~~eLlkrLk~L~~~L~~~dQ~~~~~~sl~~~~~~Lv~~~LL~HkD~~Vr~~vAcCLadIlRI~APdaPy~d~~qLkdI 90 (253)
++..+|...|+.|..+-+.++.+ ...+-.++.+-..+...+.-|++|+.-+..=+--- +.-+..+
T Consensus 48 ~~~~~l~~~L~~L~~~Vs~Ld~~------~~~LV~ail~~~W~~~~~~~v~~y~~Fl~~Lvsa~---------~~yl~~v 112 (563)
T PF05327_consen 48 ISVSQLIRWLKALSSCVSLLDSS------CKQLVEAILSLNWLGRDEDFVEAYIQFLINLVSAQ---------PKYLSPV 112 (563)
T ss_dssp --HHHHHHHHHHHHHGGGGG-SC------CHHHHHHHHT-TGGGS-HHHHHHHHHHHHHHHHH----------GGGHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHhhhH------HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHhh---------HHHHHHH
Confidence 35568999999999999988774 45556677777777776666777765322111110 2455666
Q ss_pred HHHHHHHhcCC----------CC-CCCcchhHHHHHHHHHHh
Q psy10770 91 FLFLIKQLNGL----------KD-PKDPAFKRYFYLLENLAY 121 (253)
Q Consensus 91 F~l~v~~l~~L----------~d-~~~p~f~~~~~lLesLA~ 121 (253)
+.-+++.|..- .. ....-|.+.+.+|..+.+
T Consensus 113 l~~LV~~f~p~~~~~~~~~~~~~~~~~~~~~~vH~~L~~Il~ 154 (563)
T PF05327_consen 113 LSMLVKNFIPPPSSIAEWPGCPPEKRREIYERVHDALQKILR 154 (563)
T ss_dssp HHHHHHGGGS-HHHHHH---------------HHHHHHHHHH
T ss_pred HHHHHHhccCCCccccccchhhhhhhhhhHHHHHHHHHHHHH
Confidence 66666665421 11 123467777888887763
No 52
>cd04405 RhoGAP_BRCC3-like RhoGAP_BRCC3-like: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of BRCC3-like proteins. This subgroup also contains two groups of closely related proteins, BRCC3 and DEPDC7, which both contain a C-terminal RhoGAP-like domain and an N-terminal DEP (Disheveled, Egl-10, and Pleckstrin) domain. The function(s) of BRCC3 and DEPDC7 are unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=22.48 E-value=6.1e+02 Score=23.26 Aligned_cols=104 Identities=17% Similarity=0.261 Sum_probs=57.3
Q ss_pred HHHHHHHHHHhcCCCCC--CCcchhHHHHHHHH---------HHhhhhhheeccCCCchHHHHHHHHHHHHhhccCcc--
Q psy10770 88 KTIFLFLIKQLNGLKDP--KDPAFKRYFYLLEN---------LAYVKSFNMCFELEDSQEIFCALFSLMFKIVNDEHS-- 154 (253)
Q Consensus 88 kdIF~l~v~~l~~L~d~--~~p~f~~~~~lLes---------LA~vks~vl~~DL~d~d~Li~~lF~~ff~~v~~~~~-- 154 (253)
+|||..+.+-|++|.+| .+.+|.-+..|.+- +..++.+.+.++=+ .-+.+..+.+-.-++++.+.+
T Consensus 106 ~dv~~ti~qyf~~LpEPLLT~~l~~~~~~I~~ll~~~~~e~aleAlQl~~lLLP~e-nRe~Lq~LL~fl~~va~~~~~~L 184 (235)
T cd04405 106 RLLFKTIAKYYGQLKEPLLTFHLFDIFVGILELLGNGKEEVALEALQLCLLLLPPA-SRRELRRLLRFMARAAKNDMPRL 184 (235)
T ss_pred HHHHHHHHHHHhcCCCccCcchHHHHHHHHHHHhcCccHHHHHHHHHHHHHhCCHH-HHHHHHHHHHHHHHHHhcCcccc
Confidence 35555555555555543 33455544444443 33455555555533 234555566555555544321
Q ss_pred -h--hHHHHHHHHHHHHhccccCCCHHHHHHHHHcccCCcc
Q psy10770 155 -G--KVKSFMLDVLCPLITESDILSHELLDIILMNIVDPQK 192 (253)
Q Consensus 155 -~--~V~~~m~~Il~~vIeE~e~vp~~vld~IL~~l~~~~k 192 (253)
+ .-+..|....+..|--+..++....+-+...++..++
T Consensus 185 ~~~~~nR~~v~~~Fs~~ii~~~~l~~~~~~~LV~Fmmd~~~ 225 (235)
T cd04405 185 HKEIENRMLVKQTFSRAILCSKDLDEGLADLLVLFLMDHHQ 225 (235)
T ss_pred ccccchHHHHHHHhhhHhcCccccCHHHHHHHHHHHHHcch
Confidence 2 2244677777777766667777777777766665544
No 53
>PRK12539 RNA polymerase sigma factor; Provisional
Probab=22.47 E-value=3.4e+02 Score=22.45 Aligned_cols=59 Identities=7% Similarity=0.049 Sum_probs=39.7
Q ss_pred cchhHHHHHHHHHHhhhhhheeccCCCchHHHHHHHHHHHHhhcc-CcchhHHHHHHHHH
Q psy10770 107 PAFKRYFYLLENLAYVKSFNMCFELEDSQEIFCALFSLMFKIVND-EHSGKVKSFMLDVL 165 (253)
Q Consensus 107 p~f~~~~~lLesLA~vks~vl~~DL~d~d~Li~~lF~~ff~~v~~-~~~~~V~~~m~~Il 165 (253)
..|.+|+-.|-..+..++.-...|-++++|++.+.|-.++..... +........+..|.
T Consensus 25 ~l~~~~~~~l~~~~~~~~~~~~~~~~~AeDlvQe~~l~l~~~~~~~~~~~~f~~wl~~i~ 84 (184)
T PRK12539 25 ALLERLSGHLRAYYKGKLARIGRGAEEAEDLVQEALMAIHTRRHTYDPEQPLTPWVYAIA 84 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHH
Confidence 477788888888776554445567888999999999999876532 23334444444443
No 54
>PF08568 Kinetochor_Ybp2: Uncharacterised protein family, YAP/Alf4/glomulin; InterPro: IPR013877 This is a family of proteins integrally involved in the central kinetochore. In baker's yeast the protein seems to be part of a macromolecular kinetochore complex and appears to contribute to the proper associations among the central kinetochore sub-complexes and the kinetochore-specific nucleosome. The family is localised in such a way as to bridge the COMA and Ndc80 complexes onto the centromeric nucleosome []. This family also includes aberrant root formation protein 4 and glomulin. Aberrant root formation protein 4 (Alf4) of Arabidopsis thaliana (Mouse-ear cress) is required for the initiation of lateral roots independent from auxin signalling. It may also function in maintaining the pericycle in the mitotically competent state needed for lateral root formation []. Glomulin (FAP68) is essential for normal development of the vasculature and may represent a naturally occurring ligand of the immunophilins FKBP59 and FKBP12 [, ].
Probab=21.50 E-value=8.8e+02 Score=24.79 Aligned_cols=77 Identities=17% Similarity=0.135 Sum_probs=50.5
Q ss_pred CChhHHHHhHHHHHHHHhhcCCC---chhhhhhHHHHHHHhhhhhhcCCCcchHHHHHHHHHHHHhhcCCCCCCCChHHH
Q psy10770 11 SKHNYLTFTPQTLAHTLQGMGQD---EGMYQQYIPLALHIAEDHFLSHESKDVQLLIACCIADVLRVYAPEAPYKDPDQV 87 (253)
Q Consensus 11 ~~~~eLlkrLk~L~~~L~~~dQ~---~~~~~sl~~~~~~Lv~~~LL~HkD~~Vr~~vAcCLadIlRI~APdaPy~d~~qL 87 (253)
.+.++--+.|..|.+.|++ +|+ +..++=...+.+.+..+.. ..++-.+--|+-+|-|..- |
T Consensus 36 ~~~~~~~~~l~~L~~~L~~-n~~l~~~igWDL~~~l~~~~~~~~~-----~~~~~~~~~~l~~la~~gn-------P--- 99 (633)
T PF08568_consen 36 YSNEEKEEFLPELLEILQD-NQELTYEIGWDLPKLLLPFLPSSEI-----SPCVDCCMKCLEELARLGN-------P--- 99 (633)
T ss_pred cchhhHHHHHHHHHHHHhh-CHHHHHHccccCHHHHHHHhhhhhc-----chHHHHHHHHHHHHHHhCC-------H---
Confidence 4455566778888888865 454 2334555666665554444 5566677778888888743 3
Q ss_pred HHHHHHHHHHhcCCCC
Q psy10770 88 KTIFLFLIKQLNGLKD 103 (253)
Q Consensus 88 kdIF~l~v~~l~~L~d 103 (253)
|++|--+..++..+..
T Consensus 100 kE~~l~~~E~l~~l~~ 115 (633)
T PF08568_consen 100 KELLLKVCELLEELSP 115 (633)
T ss_pred HHHHHHHHHHHHhccc
Confidence 8888888888887763
No 55
>PF02565 RecO_C: Recombination protein O C terminal; InterPro: IPR003717 The damage avoidance-tolerance pathway(s) requires functional recA, recF, recO, and recR genes, suggesting the mechanism to be daughter strand gap repair. The ruvABC genes or the recG gene is also required. The RecG pathway appears to be more active than the RuvABC pathway []. RecO may contain a mononucleotide-binding fold [].; GO: 0006281 DNA repair, 0006310 DNA recombination; PDB: 3Q8D_B 1W3S_B 2V1C_C 1U5K_B.
Probab=21.40 E-value=1.8e+02 Score=21.73 Aligned_cols=60 Identities=25% Similarity=0.339 Sum_probs=40.7
Q ss_pred chHHHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHHHhcCCCCCCCcchhHHH-HHHHHHHhhh
Q psy10770 59 DVQLLIACCIADVLRVYAPEAPYKDPDQVKTIFLFLIKQLNGLKDPKDPAFKRYF-YLLENLAYVK 123 (253)
Q Consensus 59 ~Vr~~vAcCLadIlRI~APdaPy~d~~qLkdIF~l~v~~l~~L~d~~~p~f~~~~-~lLesLA~vk 123 (253)
-.|...|+-++|++.-..|+.-- =..+|.++...+..|...+++...-.. +.+.-+....
T Consensus 4 ~~~~~~a~~~~El~~~~~~~~~~-----~~~lf~ll~~~L~~L~~~~~~~~~~~~~f~l~ll~~~G 64 (118)
T PF02565_consen 4 LERLAYASYIAELLDRLLPEGEP-----NPELFDLLLAALDALEEGEDPWLLLLIQFELKLLKLLG 64 (118)
T ss_dssp CHHHHHHHHHHHHHHHHS-CTS-------HHHHHHHHHHHHHHHCSSSHCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHHcccCCC-----hHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHcC
Confidence 46788999999999887755322 256899999888888776655444444 6666665444
No 56
>PRK09639 RNA polymerase sigma factor SigX; Provisional
Probab=21.36 E-value=2.5e+02 Score=22.48 Aligned_cols=55 Identities=7% Similarity=0.190 Sum_probs=38.4
Q ss_pred chhHHHHHHHHHHhhhhhheeccCCCchHHHHHHHHHHHHhhccCcchhHHHHHHHHHHH
Q psy10770 108 AFKRYFYLLENLAYVKSFNMCFELEDSQEIFCALFSLMFKIVNDEHSGKVKSFMLDVLCP 167 (253)
Q Consensus 108 ~f~~~~~lLesLA~vks~vl~~DL~d~d~Li~~lF~~ff~~v~~~~~~~V~~~m~~Il~~ 167 (253)
.|.+|...|-+.+... +-+-++++|++.+.|-..+.. +-+....+...+..|+..
T Consensus 8 l~~~y~~~l~~~~~~~----~~~~~~aeDlvQe~fi~~~~~-~~~~~~~~~~wl~~i~rn 62 (166)
T PRK09639 8 LFEQYYPDVVQQIFYI----VKDRTQAEDLAQEVFLRLYRS-DFKGIENEKGWLIKSARN 62 (166)
T ss_pred HHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHHHH-hcccccchHHHHHHHHHH
Confidence 4677777777777544 246667999999999888877 444455666666666654
No 57
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=21.30 E-value=7e+02 Score=23.56 Aligned_cols=128 Identities=18% Similarity=0.188 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCcchhHHHHHHHHHHhhhhhheeccCCCchHHHHHHHHHHHHhhccCcc--hhHHHHHH
Q psy10770 85 DQVKTIFLFLIKQLNGLKDPKDPAFKRYFYLLENLAYVKSFNMCFELEDSQEIFCALFSLMFKIVNDEHS--GKVKSFML 162 (253)
Q Consensus 85 ~qLkdIF~l~v~~l~~L~d~~~p~f~~~~~lLesLA~vks~vl~~DL~d~d~Li~~lF~~ff~~v~~~~~--~~V~~~m~ 162 (253)
.++...|+-++..+.+ ..-.++-..|++|++ | ++-..|+.-+.+-+-+.++.++. -.+...|.
T Consensus 174 ~Elq~yf~~It~a~~~------~~~~~r~~aL~sL~t--------D-~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm 238 (343)
T cd08050 174 KELQLYFEEITEALVG------SNEEKRREALQSLRT--------D-PGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLM 238 (343)
T ss_pred HHHHHHHHHHHHHHhC------CCHHHHHHHHHHhcc--------C-CCchhhhhHHHHHHHHHHHhhhcccHHHHHHHH
Confidence 4667777777777664 223566667777663 2 12456666666666666666554 34456666
Q ss_pred HHHHHHhcccc-CC---CHHHHHHHHHcccCCcccCC----------hhHHHHHHHHHHHchh---hhhHHHHHHhhhhc
Q psy10770 163 DVLCPLITESD-IL---SHELLDIILMNIVDPQKTQR----------KNAYLLAKELIVKTND---TLEPYIQNLTRLAN 225 (253)
Q Consensus 163 ~Il~~vIeE~e-~v---p~~vld~IL~~l~~~~k~~~----------p~A~~LA~~vi~~c~~---kL~~~v~~~f~~~~ 225 (253)
.+..+++.--. .+ =++++-.+|.+++.++-..+ --|.++-..||++++. .|++.|...+..++
T Consensus 239 ~~v~ALl~N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l 318 (343)
T cd08050 239 RMVRALLDNPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKAL 318 (343)
T ss_pred HHHHHHhcCCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHH
Confidence 77777666543 11 13355555555554433222 2344555667777764 58888887777765
Q ss_pred cc
Q psy10770 226 AV 227 (253)
Q Consensus 226 ~~ 227 (253)
.+
T Consensus 319 ~d 320 (343)
T cd08050 319 LD 320 (343)
T ss_pred cC
Confidence 53
No 58
>PF02106 Fanconi_C: Fanconi anaemia group C protein; InterPro: IPR000686 Fanconi anaemia (FA) [, , ] is a recessive inherited disease characterised by defective DNA repair. FA cells are sensitive to DNA cross-linking agents that cause chromosomal instability and cell death. The disease is manifested clinically by progressive pancytopenia, variable physical anomalies, and predisposition to malignancy. Four complementation groups have been identified, designated A to D. The gene for group C (FACC) has been cloned. Expression of the FACC cDNA corrects the phenotypic defect of FA(C) cells, resulting in normalized cell growth in the presence of DNA cross-linking agents such as mitomycin C (MMC). Gene transfer of the FACC gene should provide a survival advantage to transduced hematopoietic cells, suggesting that FA might be an ideal candidate for gene therapy []. The function of the FACC gene is not known. Immunofluorescence and sub-cellular fractionation studies of human cell lines, and COS-7 cells transiently expressing human FACC, showed the protein to be located primarily in the cytoplasm. Yet, placement of a nuclear localisation signal at the N terminus of FACC directed the hybrid protein to the nuclei of transfected COS-7 cells. Such findings suggest an indirect role for FACC in regulating DNA repair in this group of Fanconi anaemia [].; GO: 0006281 DNA repair
Probab=21.17 E-value=7.1e+02 Score=25.65 Aligned_cols=85 Identities=15% Similarity=0.191 Sum_probs=66.2
Q ss_pred hhhheeccCCCchHHHHHHHH------------HHHHhhcc-------------------CcchhHHHHHHHHHHHHhcc
Q psy10770 123 KSFNMCFELEDSQEIFCALFS------------LMFKIVND-------------------EHSGKVKSFMLDVLCPLITE 171 (253)
Q Consensus 123 ks~vl~~DL~d~d~Li~~lF~------------~ff~~v~~-------------------~~~~~V~~~m~~Il~~vIeE 171 (253)
..|+.++-++|...++..+-. .||+.|++ .|-..++..++..+..+|..
T Consensus 186 ~~CiPLvTlpd~~PLveaLL~~hg~~~~e~L~~eFleaVneAfl~kki~L~esAvvsLWlrhLPSLE~A~L~Lle~lis~ 265 (559)
T PF02106_consen 186 RVCIPLVTLPDFEPLVEALLTYHGHEPQEVLSPEFLEAVNEAFLSKKISLSESAVVSLWLRHLPSLEKAVLHLLEKLISS 265 (559)
T ss_pred HHHHHHhcCcccchHHHHHHHhCCCChHHHhcHHHHHHHHHHHHhcccCCcHHHHHHHHHhhcchHHHHHHHHHHHHHhc
Confidence 568888888987777766655 78998876 47778899999999999999
Q ss_pred ccCCCHHHHHHHHHcccCCcccCChhHHHHHHHHHHH
Q psy10770 172 SDILSHELLDIILMNIVDPQKTQRKNAYLLAKELIVK 208 (253)
Q Consensus 172 ~e~vp~~vld~IL~~l~~~~k~~~p~A~~LA~~vi~~ 208 (253)
.+.-+.++-..|=..+++. ....|+=|+..-++.+.
T Consensus 266 ~~~sl~~~e~~i~dSlLPq-aA~HpaIFriVdeifr~ 301 (559)
T PF02106_consen 266 ERNSLQRMECFIKDSLLPQ-AACHPAIFRIVDEIFRN 301 (559)
T ss_pred CCccHHHHHHHHHhhhchh-hhcchHHHHHHHHHHHH
Confidence 8888888666666566655 67788888888777654
No 59
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=20.07 E-value=4.1e+02 Score=20.37 Aligned_cols=83 Identities=19% Similarity=0.157 Sum_probs=55.7
Q ss_pred HHHHHHHHhhccCcchhHHHHHHHHHHHHhcccc-CC--CHHHHHHHHHcccCCcccCChhHHHHHHHHHHHchhhhhHH
Q psy10770 140 ALFSLMFKIVNDEHSGKVKSFMLDVLCPLITESD-IL--SHELLDIILMNIVDPQKTQRKNAYLLAKELIVKTNDTLEPY 216 (253)
Q Consensus 140 ~lF~~ff~~v~~~~~~~V~~~m~~Il~~vIeE~e-~v--p~~vld~IL~~l~~~~k~~~p~A~~LA~~vi~~c~~kL~~~ 216 (253)
+.|+..++-+++..+ -|+..=+..|..+|+..+ .+ -+.++++.+.++..+..=..=+|-+.-..++....+..=+.
T Consensus 3 ~~~~~al~~L~dp~~-PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~vl~~ 81 (92)
T PF10363_consen 3 ETLQEALSDLNDPLP-PVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDEVLPI 81 (92)
T ss_pred HHHHHHHHHccCCCc-chHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHHHHHH
Confidence 345555555554443 478888888999999887 32 45677878877776665555666677777777777766666
Q ss_pred HHHHhhh
Q psy10770 217 IQNLTRL 223 (253)
Q Consensus 217 v~~~f~~ 223 (253)
+.+.|.+
T Consensus 82 L~~~y~~ 88 (92)
T PF10363_consen 82 LLDEYAD 88 (92)
T ss_pred HHHHHhC
Confidence 6666554
Done!