Query psy10770
Match_columns 253
No_of_seqs 118 out of 205
Neff 5.5
Searched_HMMs 29240
Date Fri Aug 16 18:05:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10770.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10770hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fdd_A Transportin-1; heat rep 89.4 8.2 0.00028 38.1 15.0 165 54-228 493-679 (852)
2 2bpt_A Importin beta-1 subunit 89.1 3.2 0.00011 40.2 11.6 164 43-224 96-271 (861)
3 2qk2_A LP04448P; mini spindles 88.3 5.4 0.00018 33.1 11.2 122 40-184 54-178 (242)
4 1u6g_C TIP120 protein, CAND1; 88.1 19 0.00066 37.0 17.2 147 41-211 47-204 (1230)
5 4fdd_A Transportin-1; heat rep 86.6 5.5 0.00019 39.3 11.8 164 52-229 537-721 (852)
6 3oc3_A Helicase MOT1, MOT1; re 86.3 1 3.6E-05 45.1 6.2 149 52-230 307-455 (800)
7 1ibr_B P95, importin beta-1 su 81.4 5.3 0.00018 35.4 8.3 151 52-218 98-257 (462)
8 2qk1_A Protein STU2; STU2P, XM 81.3 24 0.00083 30.0 16.1 166 39-219 57-233 (249)
9 1qgr_A Protein (importin beta 79.7 7 0.00024 37.9 9.1 158 52-224 98-264 (876)
10 4ffb_C Protein STU2; tubulin f 78.2 8.6 0.00029 32.8 8.4 82 16-103 156-246 (278)
11 1u6g_C TIP120 protein, CAND1; 75.0 79 0.0027 32.4 17.4 167 53-226 95-303 (1230)
12 1w63_A Adapter-related protein 73.3 43 0.0015 32.1 12.7 23 52-74 321-343 (618)
13 1wa5_C Importin alpha RE-expor 73.0 16 0.00056 36.8 10.0 176 39-225 493-687 (960)
14 4b8j_A Importin subunit alpha- 64.2 86 0.0029 28.6 15.3 102 52-172 125-234 (528)
15 1vsy_4 Proteasome activator BL 64.1 1E+02 0.0035 31.3 13.6 150 61-221 399-606 (799)
16 1b3u_A Protein (protein phosph 61.1 96 0.0033 28.1 12.3 134 53-209 450-585 (588)
17 3m1i_C Exportin-1; heat repeat 56.4 77 0.0026 32.2 11.3 50 177-226 754-804 (1049)
18 2i9c_A Hypothetical protein RP 53.6 21 0.00072 28.3 5.2 63 9-74 7-84 (123)
19 4h7y_A Dual specificity protei 50.7 97 0.0033 25.6 8.9 94 85-191 36-142 (161)
20 2qk2_A LP04448P; mini spindles 45.8 1.2E+02 0.0041 24.6 11.9 139 52-210 23-161 (242)
21 4ffb_C Protein STU2; tubulin f 45.3 1.3E+02 0.0043 25.3 9.4 140 52-207 63-212 (278)
22 1b3u_A Protein (protein phosph 44.9 1.1E+02 0.0036 27.8 9.3 118 51-187 171-290 (588)
23 4hat_C Exportin-1; heat repeat 44.4 2.9E+02 0.0098 28.6 14.8 151 57-211 247-442 (1023)
24 2qk1_A Protein STU2; STU2P, XM 40.7 1.6E+02 0.0055 24.7 9.4 144 52-210 24-174 (249)
25 1ldd_A APC2WHB, anaphase promo 39.0 24 0.00081 25.5 3.1 30 68-97 28-60 (74)
26 1qgr_A Protein (importin beta 38.3 2.7E+02 0.0093 26.6 19.0 162 53-224 460-654 (876)
27 2x1g_F Cadmus; transport prote 34.8 2E+02 0.007 28.5 10.2 91 136-229 501-594 (971)
28 3a6p_A Exportin-5; exportin-5, 34.1 1.9E+02 0.0064 30.3 10.2 92 136-229 529-635 (1204)
29 3ibv_A Exportin-T; karyopherin 32.5 3.5E+02 0.012 27.7 11.8 107 38-150 531-657 (980)
30 2vgl_A Adaptor protein complex 31.3 2.9E+02 0.01 26.4 10.5 114 52-188 299-414 (621)
31 2x19_B Importin-13; nuclear tr 30.8 1.4E+02 0.0046 29.6 8.1 162 57-224 583-771 (963)
32 3ebb_A Phospholipase A2-activa 30.6 2E+02 0.0069 25.4 8.5 138 11-159 55-209 (304)
33 2jdq_A Importin alpha-1 subuni 29.1 2.8E+02 0.0096 23.9 13.4 117 52-187 72-201 (450)
34 2vgl_B AP-2 complex subunit be 28.6 31 0.0011 32.8 2.9 115 52-186 247-361 (591)
35 2zhy_A ATP:COB(I)alamin adenos 27.1 34 0.0012 28.6 2.6 68 137-211 65-133 (183)
36 1wa5_C Importin alpha RE-expor 27.0 4.8E+02 0.016 26.0 16.2 155 56-229 611-771 (960)
37 2bpt_A Importin beta-1 subunit 25.8 4.3E+02 0.015 25.0 19.1 164 53-225 463-645 (861)
38 3bu8_A Telomeric repeat-bindin 24.1 3.1E+02 0.011 23.9 8.1 121 34-165 32-158 (235)
39 1wa5_B Importin alpha subunit; 23.9 1.3E+02 0.0044 27.5 6.2 153 51-217 222-380 (530)
40 1ibr_B P95, importin beta-1 su 23.9 3.5E+02 0.012 23.3 13.6 162 53-225 268-457 (462)
41 2x19_B Importin-13; nuclear tr 23.9 5.2E+02 0.018 25.3 13.8 91 56-150 251-345 (963)
42 3ul1_B Importin subunit alpha- 23.6 54 0.0019 30.4 3.5 66 51-119 408-476 (510)
43 4atg_A TAF6; transcription, TF 23.4 3.3E+02 0.011 22.8 8.3 128 85-230 7-145 (196)
44 4db8_A Armadillo-repeat protei 22.5 2.9E+02 0.0099 21.8 9.3 210 4-233 17-235 (252)
45 3pk1_B Apoptosis regulator BAX 22.4 68 0.0023 19.9 2.6 23 7-29 3-25 (34)
46 3twe_A Alpha4H; unknown functi 21.8 62 0.0021 18.6 2.2 13 15-27 12-24 (27)
No 1
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=89.40 E-value=8.2 Score=38.09 Aligned_cols=165 Identities=17% Similarity=0.218 Sum_probs=99.8
Q ss_pred cCCCcchHHHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHHHhcCCCCCCCcchhHHHHHHHHHHhhhhhheeccCCC
Q psy10770 54 SHESKDVQLLIACCIADVLRVYAPEAPYKDPDQVKTIFLFLIKQLNGLKDPKDPAFKRYFYLLENLAYVKSFNMCFELED 133 (253)
Q Consensus 54 ~HkD~~Vr~~vAcCLadIlRI~APdaPy~d~~qLkdIF~l~v~~l~~L~d~~~p~f~~~~~lLesLA~vks~vl~~DL~d 133 (253)
+..+...+..+.-|+..|.....+ ++..++.+..+...+++.+..+.|.+... ..+++.++.+-..+-- +
T Consensus 493 ~~~~~~~~~~~~~ai~~l~~~~~~--~~~~~~~~~~l~p~l~~~~~~l~d~~~~~----~~~~~~l~~i~~~~g~----~ 562 (852)
T 4fdd_A 493 SKYQHKNLLILYDAIGTLADSVGH--HLNKPEYIQMLMPPLIQKWNMLKDEDKDL----FPLLECLSSVATALQS----G 562 (852)
T ss_dssp HHCCHHHHHHHHHHHHHHHHHHGG--GGCCHHHHHHHHHHHHHHHHHSCTTCTTH----HHHHHHHHHHHHHHGG----G
T ss_pred HHhChHHHHHHHHHHHHHHHHhhh--hhccHHHHHHHHHHHHHHHHhcccccHHH----HHHHHHHHHHHHHHhH----h
Confidence 333445555677777777765433 23334577888888888888887754433 2466666655443321 1
Q ss_pred chHHHHHHHHHHHHhhccC----------------cchhHHHHHHHHHHHHhccccC-C-----CHHHHHHHHHcccCCc
Q psy10770 134 SQEIFCALFSLMFKIVNDE----------------HSGKVKSFMLDVLCPLITESDI-L-----SHELLDIILMNIVDPQ 191 (253)
Q Consensus 134 ~d~Li~~lF~~ff~~v~~~----------------~~~~V~~~m~~Il~~vIeE~e~-v-----p~~vld~IL~~l~~~~ 191 (253)
....+..+|..+.+.++.. -...+.....+.+..++...+. + ...++..++..+-.+.
T Consensus 563 ~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 642 (852)
T 4fdd_A 563 FLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKM 642 (852)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHhHhHHHHhcCCcHHHHHHHHhCCCC
Confidence 2233344444444443321 1234565556666666554431 1 2367888886665555
Q ss_pred ccCChhHHHHHHHHHHHchhhhhHHHHHHhhhhcccC
Q psy10770 192 KTQRKNAYLLAKELIVKTNDTLEPYIQNLTRLANAVF 228 (253)
Q Consensus 192 k~~~p~A~~LA~~vi~~c~~kL~~~v~~~f~~~~~~~ 228 (253)
....-.|+.+-.++++.|.+.+++|+.+++.-+...+
T Consensus 643 ~~vr~~a~~~l~~l~~~~~~~~~~~l~~~lp~l~~~l 679 (852)
T 4fdd_A 643 PEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNL 679 (852)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTC
T ss_pred hhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHc
Confidence 5566788888899999999999999999876665555
No 2
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=89.06 E-value=3.2 Score=40.19 Aligned_cols=164 Identities=12% Similarity=0.118 Sum_probs=89.0
Q ss_pred HHHHHhhhhhhcCCCcchHHHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHHHhcCCCCCCCcchhHHHHHHHHHHhh
Q psy10770 43 LALHIAEDHFLSHESKDVQLLIACCIADVLRVYAPEAPYKDPDQVKTIFLFLIKQLNGLKDPKDPAFKRYFYLLENLAYV 122 (253)
Q Consensus 43 ~~~~Lv~~~LL~HkD~~Vr~~vAcCLadIlRI~APdaPy~d~~qLkdIF~l~v~~l~~L~d~~~p~f~~~~~lLesLA~v 122 (253)
+...|++ .|.+.+..||.-+|-||+.|.+..-|...| .+++..+++.+. +.+++ ..+...++.+..+
T Consensus 96 ik~~ll~--~l~~~~~~vr~~~~~~l~~i~~~~~p~~~w------~~ll~~L~~~l~---~~~~~--~~r~~al~~l~~l 162 (861)
T 2bpt_A 96 IKTNALT--ALVSIEPRIANAAAQLIAAIADIELPHGAW------PELMKIMVDNTG---AEQPE--NVKRASLLALGYM 162 (861)
T ss_dssp HHHHHHH--HHTCSSHHHHHHHHHHHHHHHHHHGGGTCC------HHHHHHHHHHTS---TTSCH--HHHHHHHHHHHHH
T ss_pred HHHHHHH--HHCCCchHHHHHHHHHHHHHHHhhCccccc------HHHHHHHHHHHh---cCCCH--HHHHHHHHHHHHH
Confidence 3444444 367788999999999999999997674444 334455555543 22133 2223333333322
Q ss_pred hhhheeccCCC----chHHHHHHHHHHHHhhccC-cchhHHHHHHHHHHHHhccccC-CC-----HHHHHHHHHcccCCc
Q psy10770 123 KSFNMCFELED----SQEIFCALFSLMFKIVNDE-HSGKVKSFMLDVLCPLITESDI-LS-----HELLDIILMNIVDPQ 191 (253)
Q Consensus 123 ks~vl~~DL~d----~d~Li~~lF~~ff~~v~~~-~~~~V~~~m~~Il~~vIeE~e~-vp-----~~vld~IL~~l~~~~ 191 (253)
-. ++.+ -...+..++..+....+.. .+..|+......+..+++-.+. .. ..++..+...+-.++
T Consensus 163 ~~-----~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 237 (861)
T 2bpt_A 163 CE-----SADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAED 237 (861)
T ss_dssp HH-----TSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSC
T ss_pred HH-----cCChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCC
Confidence 11 1111 1234566666666666554 2567888888888887543221 11 235555543332222
Q ss_pred ccCChhHHHHHHHHHHHchhhhhHHHH-HHhhhh
Q psy10770 192 KTQRKNAYLLAKELIVKTNDTLEPYIQ-NLTRLA 224 (253)
Q Consensus 192 k~~~p~A~~LA~~vi~~c~~kL~~~v~-~~f~~~ 224 (253)
......|...-..++....+.+.+++. .++.-+
T Consensus 238 ~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~ 271 (861)
T 2bpt_A 238 IEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALT 271 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222234455555666667777777776 555533
No 3
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=88.33 E-value=5.4 Score=33.07 Aligned_cols=122 Identities=11% Similarity=0.165 Sum_probs=75.3
Q ss_pred hHHHHHHHhhhhhh-cCCCcchHHHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHHHhcCCCCCCCcchhHHHHHHHH
Q psy10770 40 YIPLALHIAEDHFL-SHESKDVQLLIACCIADVLRVYAPEAPYKDPDQVKTIFLFLIKQLNGLKDPKDPAFKRYFYLLEN 118 (253)
Q Consensus 40 l~~~~~~Lv~~~LL-~HkD~~Vr~~vAcCLadIlRI~APdaPy~d~~qLkdIF~l~v~~l~~L~d~~~p~f~~~~~lLes 118 (253)
+..+...|. ++| +.+|..||..++-|+..+.+-..|+ |. .++..++..++..++ |++..--......|.+
T Consensus 54 ~~~i~~~L~--~~l~kd~~~~V~~~a~~~l~~la~~l~~~--~~--~~~~~ilp~ll~~l~---d~~~~vr~~a~~aL~~ 124 (242)
T 2qk2_A 54 YGALVSALK--KVITKDSNVVLVAMAGKCLALLAKGLAKR--FS--NYASACVPSLLEKFK---EKKPNVVTALREAIDA 124 (242)
T ss_dssp CHHHHHHHH--HHHHHCSCHHHHHHHHHHHHHHHHHHGGG--GH--HHHHHHHHHHHHGGG---CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHH--HHhccCCCHHHHHHHHHHHHHHHHHHhhh--HH--HHHHHHHHHHHHHHc---CCCHHHHHHHHHHHHH
Confidence 445555553 245 4688999999999999999876653 33 467777777777765 5444333445555555
Q ss_pred HHhhhhhheeccCCCchHHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHhcccc--CCCHHHHHHHH
Q psy10770 119 LAYVKSFNMCFELEDSQEIFCALFSLMFKIVNDEHSGKVKSFMLDVLCPLITESD--ILSHELLDIIL 184 (253)
Q Consensus 119 LA~vks~vl~~DL~d~d~Li~~lF~~ff~~v~~~~~~~V~~~m~~Il~~vIeE~e--~vp~~vld~IL 184 (253)
+... . .-+. +...++...+..+ ..|+......+..++...+ ......++.++
T Consensus 125 ~~~~------~---~~~~----ll~~l~~~l~~~~-~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~ 178 (242)
T 2qk2_A 125 IYAS------T---SLEA----QQESIVESLSNKN-PSVKSETALFIARALTRTQPTALNKKLLKLLT 178 (242)
T ss_dssp HHTT------S---CHHH----HHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHH
T ss_pred HHHc------C---CHHH----HHHHHHHHHcCCC-hHHHHHHHHHHHHHHHHcCCCCccHHHHHHHH
Confidence 5431 1 1223 4444555555444 4889999999999887753 34444444444
No 4
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=88.05 E-value=19 Score=37.04 Aligned_cols=147 Identities=16% Similarity=0.149 Sum_probs=84.1
Q ss_pred HHHHHHHhhhhhhcCCCcchHHHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHHHhcCCCCCCCcchhHHHHHHHHHH
Q psy10770 41 IPLALHIAEDHFLSHESKDVQLLIACCIADVLRVYAPEAPYKDPDQVKTIFLFLIKQLNGLKDPKDPAFKRYFYLLENLA 120 (253)
Q Consensus 41 ~~~~~~Lv~~~LL~HkD~~Vr~~vAcCLadIlRI~APdaPy~d~~qLkdIF~l~v~~l~~L~d~~~p~f~~~~~lLesLA 120 (253)
..+...|.+ .|.++|..||..++-||..+.+-..+ .++..|+..+...+ .|++.. -+......++
T Consensus 47 ~~il~~Ll~--~L~d~~~~vR~~A~~~L~~l~~~~~~-------~~~~~i~~~Ll~~l---~d~~~~---vR~~a~~~L~ 111 (1230)
T 1u6g_C 47 RKVVKMILK--LLEDKNGEVQNLAVKCLGPLVSKVKE-------YQVETIVDTLCTNM---LSDKEQ---LRDISSIGLK 111 (1230)
T ss_dssp HHHHHHHHH--HTTCSSHHHHHHHHHHHHHHHTTSCH-------HHHHHHHHHHHHHT---TCSSSH---HHHHHHHHHH
T ss_pred HHHHHHHHH--HhcCCCHHHHHHHHHHHHHHHHhCCH-------HHHHHHHHHHHHHh---cCCcHH---HHHHHHHHHH
Confidence 344444443 35689999999999999999875322 46777777776664 454432 2333445555
Q ss_pred hhhhhheeccCCC-------chHHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHhcccc-CC-C--HHHHHHHHHcccC
Q psy10770 121 YVKSFNMCFELED-------SQEIFCALFSLMFKIVNDEHSGKVKSFMLDVLCPLITESD-IL-S--HELLDIILMNIVD 189 (253)
Q Consensus 121 ~vks~vl~~DL~d-------~d~Li~~lF~~ff~~v~~~~~~~V~~~m~~Il~~vIeE~e-~v-p--~~vld~IL~~l~~ 189 (253)
++-. ++.. ......+++..+++...++....++.....++..+++... .+ | ++++..++..+-
T Consensus 112 ~i~~-----~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~~L~- 185 (1230)
T 1u6g_C 112 TVIG-----ELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLT- 185 (1230)
T ss_dssp HHHH-----HCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGG-
T ss_pred HHHH-----hCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHc-
Confidence 3322 2221 1234555666666666543445788888888888886432 22 2 455555554443
Q ss_pred CcccCChhHHHHHHHHHHHchh
Q psy10770 190 PQKTQRKNAYLLAKELIVKTND 211 (253)
Q Consensus 190 ~~k~~~p~A~~LA~~vi~~c~~ 211 (253)
..++.-+.-|...+...+.
T Consensus 186 ---~~~~~vR~~a~~al~~l~~ 204 (1230)
T 1u6g_C 186 ---SPRLAVRKRTIIALGHLVM 204 (1230)
T ss_dssp ---CSSHHHHHHHHHHHHHHTT
T ss_pred ---CCcHHHHHHHHHHHHHHHH
Confidence 3345555555555554443
No 5
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=86.62 E-value=5.5 Score=39.34 Aligned_cols=164 Identities=16% Similarity=0.277 Sum_probs=87.0
Q ss_pred hhcCCCcchHHHHHHHHHHHHhhcCCC-CCCCChHHHHHHHHHHHHHhc--------------CCCCCCCcchhHHHHHH
Q psy10770 52 FLSHESKDVQLLIACCIADVLRVYAPE-APYKDPDQVKTIFLFLIKQLN--------------GLKDPKDPAFKRYFYLL 116 (253)
Q Consensus 52 LL~HkD~~Vr~~vAcCLadIlRI~APd-aPy~d~~qLkdIF~l~v~~l~--------------~L~d~~~p~f~~~~~lL 116 (253)
.+...+++++ .+.-|+.-|.+..-+. .|| +..||..++..+. ....++..........+
T Consensus 537 ~l~d~~~~~~-~~~~~l~~i~~~~g~~~~~~-----~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l 610 (852)
T 4fdd_A 537 MLKDEDKDLF-PLLECLSSVATALQSGFLPY-----CEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLL 610 (852)
T ss_dssp HSCTTCTTHH-HHHHHHHHHHHHHGGGGHHH-----HHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHH
T ss_pred hcccccHHHH-HHHHHHHHHHHHHhHhHHHH-----HHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHH
Confidence 3456778887 6778899888876553 344 4445554444433 12222222222333444
Q ss_pred HHHHhhhhhheeccCCCchHHH--HHHHHHHHHhhccCcchhHHHHHHHHHHHHhcccc--CCC--HHHHHHHHHcccCC
Q psy10770 117 ENLAYVKSFNMCFELEDSQEIF--CALFSLMFKIVNDEHSGKVKSFMLDVLCPLITESD--ILS--HELLDIILMNIVDP 190 (253)
Q Consensus 117 esLA~vks~vl~~DL~d~d~Li--~~lF~~ff~~v~~~~~~~V~~~m~~Il~~vIeE~e--~vp--~~vld~IL~~l~~~ 190 (253)
..+++ .++ ++....+ ..++..+++...+. ...|+......+..+..-.. ..| ++++..+...+-.+
T Consensus 611 ~~l~~------~l~-~~~~~~~~~~~~~~~l~~~l~~~-~~~vr~~a~~~l~~l~~~~~~~~~~~l~~~lp~l~~~l~~~ 682 (852)
T 4fdd_A 611 SGLAE------GLG-GNIEQLVARSNILTLMYQCMQDK-MPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPE 682 (852)
T ss_dssp HHHHH------HHG-GGGHHHHHTCCHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCTT
T ss_pred HHHHH------HHh-HhHHHHhcCCcHHHHHHHHhCCC-ChhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCcc
Confidence 44432 122 1223333 35566666655433 34566655555555543222 223 55777777776332
Q ss_pred cccCChhHHHHHHHHHHHchhhhhHHHHHHhhhhcccCC
Q psy10770 191 QKTQRKNAYLLAKELIVKTNDTLEPYIQNLTRLANAVFP 229 (253)
Q Consensus 191 ~k~~~p~A~~LA~~vi~~c~~kL~~~v~~~f~~~~~~~~ 229 (253)
.-+....|-....+++....+.++||+..++..+..-+.
T Consensus 683 ~~~v~~~a~~alg~i~~~~~~~~~p~~~~il~~L~~~l~ 721 (852)
T 4fdd_A 683 FISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIIN 721 (852)
T ss_dssp SHHHHHHHHHHHHHHHHHHGGGGGGGTHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhC
Confidence 212222333334566777777899999888888765554
No 6
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=86.28 E-value=1 Score=45.15 Aligned_cols=149 Identities=15% Similarity=0.154 Sum_probs=104.2
Q ss_pred hhcCCCcchHHHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHHHhcCCCCCCCcchhHHHHHHHHHHhhhhhheeccC
Q psy10770 52 FLSHESKDVQLLIACCIADVLRVYAPEAPYKDPDQVKTIFLFLIKQLNGLKDPKDPAFKRYFYLLENLAYVKSFNMCFEL 131 (253)
Q Consensus 52 LL~HkD~~Vr~~vAcCLadIlRI~APdaPy~d~~qLkdIF~l~v~~l~~L~d~~~p~f~~~~~lLesLA~vks~vl~~DL 131 (253)
-|+..|.|||+.+|.+|..+. . ++++..+...+-++|..+.| =+++-..-..+|..|-.-.. ..
T Consensus 307 GL~D~DDDVRAVAAetLiPIA---------~-p~~l~~LL~iLWd~L~~LDD-LSASTgSVMdLLAkL~s~p~-----~a 370 (800)
T 3oc3_A 307 LLSSPDEDIKLLSAELLCHFP---------I-TDSLDLVLEKCWKNIESEEL-ISVSKTSNLSLLTKIYRENP-----EL 370 (800)
T ss_dssp HTTCSSHHHHHHHHHHHTTSC---------C-SSTHHHHHHHHHHHHHTCCS-CCTTHHHHHHHHHHHHHHCT-----TC
T ss_pred hcCCcccHHHHHHHHHhhhhc---------c-hhhHHHHHHHHHHHhhhhcc-cchhhHHHHHHHHHHHcCCc-----cc
Confidence 345669999999999998887 1 25799999999999999966 44455566666666655442 11
Q ss_pred CCchHHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHhccccCCCHHHHHHHHHcccCCcccCChhHHHHHHHHHHHchh
Q psy10770 132 EDSQEIFCALFSLMFKIVNDEHSGKVKSFMLDVLCPLITESDILSHELLDIILMNIVDPQKTQRKNAYLLAKELIVKTND 211 (253)
Q Consensus 132 ~d~d~Li~~lF~~ff~~v~~~~~~~V~~~m~~Il~~vIeE~e~vp~~vld~IL~~l~~~~k~~~p~A~~LA~~vi~~c~~ 211 (253)
.....++..+|--|- ..-.+|+......+..++ ...++..|+++++-+. +..-.+++.++.++-.+
T Consensus 371 ~~dp~LVPRL~PFLR-----HtITSVR~AVL~TL~tfL------~~~~LRLIFQNILLE~---neeIl~lS~~VWk~r~~ 436 (800)
T 3oc3_A 371 SIPPERLKDIFPCFT-----SPVPEVRTSILNMVKNLS------EESIDFLVAEVVLIEE---KDEIREMAIKLLKKRRD 436 (800)
T ss_dssp CCCSGGGGGTGGGGT-----CSSHHHHHHHHHHTTTCC------CHHHHHHHHHHHHHCS---CHHHHHHHHHHHHTCSC
T ss_pred ccChHHHHHHHhhhc-----CCcHHHHHHHHHHHHHHH------hhhHHHHHHHHHHhCC---cHHHHHHHHHHHHHHHH
Confidence 111145555544332 223688888888887766 6789999999887543 36677888888873333
Q ss_pred hhhHHHHHHhhhhcccCCC
Q psy10770 212 TLEPYIQNLTRLANAVFPN 230 (253)
Q Consensus 212 kL~~~v~~~f~~~~~~~~~ 230 (253)
=+++-++..-+-.+++|=+
T Consensus 437 Ll~~wi~L~MtPIGv~f~k 455 (800)
T 3oc3_A 437 LPKNLILHFMNVIGGSLYE 455 (800)
T ss_dssp CCHHHHHHHHHHTTSCSSS
T ss_pred HHHHHHHHhcCcCCCcccc
Confidence 3899999999988888655
No 7
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=81.45 E-value=5.3 Score=35.35 Aligned_cols=151 Identities=13% Similarity=0.138 Sum_probs=77.0
Q ss_pred hhcCCCcchHHHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHHHhcCCCCCC-Ccc-hhHHHHHHHHHHhhhhhheec
Q psy10770 52 FLSHESKDVQLLIACCIADVLRVYAPEAPYKDPDQVKTIFLFLIKQLNGLKDPK-DPA-FKRYFYLLENLAYVKSFNMCF 129 (253)
Q Consensus 52 LL~HkD~~Vr~~vAcCLadIlRI~APdaPy~d~~qLkdIF~l~v~~l~~L~d~~-~p~-f~~~~~lLesLA~vks~vl~~ 129 (253)
.|.+.+..| .-+|-||+.|.+...|+..|++ -+..+++. +. +.+ ++. -......|..+.+--. -
T Consensus 98 ~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w~~--ll~~L~~~----l~---~~~~~~~~r~~al~~l~~l~~~~~----~ 163 (462)
T 1ibr_B 98 TLGTETYRP-SSASQCVAGIACAEIPVNQWPE--LIPQLVAN----VT---NPNSTEHMKESTLEAIGYICQDID----P 163 (462)
T ss_dssp HTTCCCSSS-CSHHHHHHHHHHHHGGGTCCTT--HHHHHHHH----HH---CTTCCHHHHHHHHHHHHHHHHHSC----G
T ss_pred HhCCCCchh-hHHHHHHHHHHHHhccccccHH--HHHHHHHH----hc---cCCCCHHHHHHHHHHHHHHHHhCC----c
Confidence 366777888 8899999999999888766652 44544444 32 221 321 1123333444432100 0
Q ss_pred cCCCchHHHHHHHHHHHHhhccCc-chhHHHHHHHHHHHHhcccc-CCC-----HHHHHHHHHcccCCcccCChhHHHHH
Q psy10770 130 ELEDSQEIFCALFSLMFKIVNDEH-SGKVKSFMLDVLCPLITESD-ILS-----HELLDIILMNIVDPQKTQRKNAYLLA 202 (253)
Q Consensus 130 DL~d~d~Li~~lF~~ff~~v~~~~-~~~V~~~m~~Il~~vIeE~e-~vp-----~~vld~IL~~l~~~~k~~~p~A~~LA 202 (253)
+. -...+..++..+....+.+. +..|+......+..+++-.+ ..+ .-++..+....-.+.......+.+.-
T Consensus 164 ~~--~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l 241 (462)
T 1ibr_B 164 EQ--LQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNL 241 (462)
T ss_dssp GG--TGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred hh--hHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 10 12344556666777666654 56788777777777654221 111 11233333222122222223444555
Q ss_pred HHHHHHchhhhhHHHH
Q psy10770 203 KELIVKTNDTLEPYIQ 218 (253)
Q Consensus 203 ~~vi~~c~~kL~~~v~ 218 (253)
..++..+.+.+.+++.
T Consensus 242 ~~l~~~~~~~~~~~~~ 257 (462)
T 1ibr_B 242 VKIMSLYYQYMETYMG 257 (462)
T ss_dssp HHHHHHCGGGCTTTTT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5566666666665554
No 8
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=81.34 E-value=24 Score=29.97 Aligned_cols=166 Identities=12% Similarity=0.150 Sum_probs=103.6
Q ss_pred hhHHHHHHHhhhhhh-cCCCcchHHHHHHHHHHHHhhcC-CCCCCCChHHHHHHHHHHHHHhcCCCCCCCcchhHHHHHH
Q psy10770 39 QYIPLALHIAEDHFL-SHESKDVQLLIACCIADVLRVYA-PEAPYKDPDQVKTIFLFLIKQLNGLKDPKDPAFKRYFYLL 116 (253)
Q Consensus 39 sl~~~~~~Lv~~~LL-~HkD~~Vr~~vAcCLadIlRI~A-PdaPy~d~~qLkdIF~l~v~~l~~L~d~~~p~f~~~~~lL 116 (253)
.+..+...|. +.+ +.+|..||...+-||..+-+-.. |+ |.- .....++-.+++.++ |....-=....+-|
T Consensus 57 ~~~~~~~~L~--~~l~~D~n~~v~~~A~~al~~la~~l~~~~--f~~-~y~~~llp~ll~~l~---dkk~~V~~aa~~al 128 (249)
T 2qk1_A 57 NYSNLLGIYG--HIIQKDANIQAVALAAQSVELICDKLKTPG--FSK-DYVSLVFTPLLDRTK---EKKPSVIEAIRKAL 128 (249)
T ss_dssp CCHHHHHHHH--HHHHHCSCHHHHHHHHHHHHHHHHHHCTTT--SCH-HHHHHHHHHHHHGGG---CCCHHHHHHHHHHH
T ss_pred cHHHHHHHHH--HHhccCCCHHHHHHHHHHHHHHHHhccccc--ccH-HHHHHHHHHHHHHHc---CCCHHHHHHHHHHH
Confidence 3445544442 245 67788899999999999998777 66 430 245566666666664 44333334556667
Q ss_pred HHHHhhhhhheeccCCCchHHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHhccccCC--------CHHHHHHHHHccc
Q psy10770 117 ENLAYVKSFNMCFELEDSQEIFCALFSLMFKIVNDEHSGKVKSFMLDVLCPLITESDIL--------SHELLDIILMNIV 188 (253)
Q Consensus 117 esLA~vks~vl~~DL~d~d~Li~~lF~~ff~~v~~~~~~~V~~~m~~Il~~vIeE~e~v--------p~~vld~IL~~l~ 188 (253)
+++.+. +.....-+.-++++..+| ...+... ..++......+..+++.+... +.+++..+...+-
T Consensus 129 ~~i~~~--~~~~~~~~~l~~ll~~l~----~~l~~k~-~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~ 201 (249)
T 2qk1_A 129 LTICKY--YDPLASSGRNEDMLKDIL----EHMKHKT-PQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVN 201 (249)
T ss_dssp HHHHHH--SCTTCTTCTTHHHHHHHH----HHTTCSS-HHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHT
T ss_pred HHHHHH--ccccccCCcHHHHHHHHH----HHHcCCC-hHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhc
Confidence 777752 211000001235655555 3444443 488889999999999988753 4556666665555
Q ss_pred CCcccCChhHHHHHHHHHHHchhh-hhHHHHH
Q psy10770 189 DPQKTQRKNAYLLAKELIVKTNDT-LEPYIQN 219 (253)
Q Consensus 189 ~~~k~~~p~A~~LA~~vi~~c~~k-L~~~v~~ 219 (253)
.+++....+|+.....+++...++ +.|++..
T Consensus 202 D~~~~VR~aA~~~l~~i~~~vG~~~~~p~l~~ 233 (249)
T 2qk1_A 202 DTQPAIRTIGFESFAILIKIFGMNTFVKTLEH 233 (249)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHCSGGGHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 556666777777777777777765 8887765
No 9
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=79.67 E-value=7 Score=37.87 Aligned_cols=158 Identities=15% Similarity=0.196 Sum_probs=86.1
Q ss_pred hhcCCCcchHHHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHHHhcCCCCCC-CcchhHHHHHHHHHHhhhhhheecc
Q psy10770 52 FLSHESKDVQLLIACCIADVLRVYAPEAPYKDPDQVKTIFLFLIKQLNGLKDPK-DPAFKRYFYLLENLAYVKSFNMCFE 130 (253)
Q Consensus 52 LL~HkD~~Vr~~vAcCLadIlRI~APdaPy~d~~qLkdIF~l~v~~l~~L~d~~-~p~f~~~~~lLesLA~vks~vl~~D 130 (253)
.|.+.+..+ .-++-|++.|.|..-|..-|++ -+.. ++..+. +++ ++ ..+...|+.+..+=... +
T Consensus 98 ~l~~~~~~~-~~~~~~l~~i~~~~~~~~~w~~--ll~~----l~~~l~---~~~~~~--~~r~~al~~l~~l~~~~---~ 162 (876)
T 1qgr_A 98 TLGTETYRP-SSASQCVAGIACAEIPVNQWPE--LIPQ----LVANVT---NPNSTE--HMKESTLEAIGYICQDI---D 162 (876)
T ss_dssp HTTTCCSSS-CHHHHHHHHHHHHHGGGTCCTT--HHHH----HHHHHH---CTTCCH--HHHHHHHHHHHHHHHHS---C
T ss_pred HhCCCcHHH-HHHHHHHHHHHHhhCcccccHH--HHHH----HHHHHh---CCCCCH--HHHHHHHHHHHHHHHhc---C
Confidence 356777788 8889999999999877555542 3343 344332 221 32 33333444444221100 0
Q ss_pred CCCchHHHHHHHHHHHHhhccCc-chhHHHHHHHHHHHHhcccc-CCC-----HHHHHHHHHcccCCcccCChhHHHHHH
Q psy10770 131 LEDSQEIFCALFSLMFKIVNDEH-SGKVKSFMLDVLCPLITESD-ILS-----HELLDIILMNIVDPQKTQRKNAYLLAK 203 (253)
Q Consensus 131 L~d~d~Li~~lF~~ff~~v~~~~-~~~V~~~m~~Il~~vIeE~e-~vp-----~~vld~IL~~l~~~~k~~~p~A~~LA~ 203 (253)
-+.-...+..++..+...++.+. +..|+......+..++...+ .+. ..++..+...+-.+.......|.+.-.
T Consensus 163 ~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~ 242 (876)
T 1qgr_A 163 PEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLV 242 (876)
T ss_dssp HHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred HhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 00012344555566666665553 46788888888887775422 111 135666654332222223345666666
Q ss_pred HHHHHchhhhhHHHH-HHhhhh
Q psy10770 204 ELIVKTNDTLEPYIQ-NLTRLA 224 (253)
Q Consensus 204 ~vi~~c~~kL~~~v~-~~f~~~ 224 (253)
.++..+.+.+.+++. ..+.-+
T Consensus 243 ~l~~~~~~~~~~~~~~~l~~~~ 264 (876)
T 1qgr_A 243 KIMSLYYQYMETYMGPALFAIT 264 (876)
T ss_dssp HHHHHSGGGCHHHHTTTHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHH
Confidence 777778788888777 555544
No 10
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=78.21 E-value=8.6 Score=32.79 Aligned_cols=82 Identities=16% Similarity=0.212 Sum_probs=44.4
Q ss_pred HHHhHHHHHHHHhhcCCCchhh-hhhHHHHHHHhhhhhhcCCCcchHHHHHHHHHHHHhhcCCCC-----CCCC---hHH
Q psy10770 16 LTFTPQTLAHTLQGMGQDEGMY-QQYIPLALHIAEDHFLSHESKDVQLLIACCIADVLRVYAPEA-----PYKD---PDQ 86 (253)
Q Consensus 16 LlkrLk~L~~~L~~~dQ~~~~~-~sl~~~~~~Lv~~~LL~HkD~~Vr~~vAcCLadIlRI~APda-----Py~d---~~q 86 (253)
....+.-|...|.+......+. ..+..+.+.| .++|.|+|++||--..-|++++.|..-|.. +|-+ +.+
T Consensus 156 ~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l--~k~l~d~~~~VR~aA~~l~~~ly~~~G~~~~~~~~~~l~~lkp~~ 233 (278)
T 4ffb_C 156 IAAAANCVYELMAAFGLTNVNVQTFLPELLKHV--PQLAGHGDRNVRSQTMNLIVEIYKVTGNNSDLLEEILFKKLKPIQ 233 (278)
T ss_dssp HHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGH--HHHHTCSSHHHHHHHHHHHHHHHTC-----------CTTSSCHHH
T ss_pred HHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHH--HHHHhCCcHHHHHHHHHHHHHHHHHhCcchhhhhhhhhhcCCHHH
Confidence 3344445555555443322221 1222233333 467899999999999999999999987653 3422 345
Q ss_pred HHHHHHHHHHHhcCCCC
Q psy10770 87 VKTIFLFLIKQLNGLKD 103 (253)
Q Consensus 87 LkdIF~l~v~~l~~L~d 103 (253)
++++. ..|..+.+
T Consensus 234 ~k~le----~~f~k~~~ 246 (278)
T 4ffb_C 234 VKDLH----KLFAKVGD 246 (278)
T ss_dssp HHHHH----HHHSCCCC
T ss_pred HHHHH----HHHHhcCC
Confidence 55554 44566554
No 11
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=75.00 E-value=79 Score=32.44 Aligned_cols=167 Identities=8% Similarity=0.024 Sum_probs=86.1
Q ss_pred hcCCCcchHHHHHHHHHHHHhhcCCC---CCCCChHHHHHHHHHHHHHhcCCCCCCCcchhHHHHHHHHHHhhhhhheec
Q psy10770 53 LSHESKDVQLLIACCIADVLRVYAPE---APYKDPDQVKTIFLFLIKQLNGLKDPKDPAFKRYFYLLENLAYVKSFNMCF 129 (253)
Q Consensus 53 L~HkD~~Vr~~vAcCLadIlRI~APd---aPy~d~~qLkdIF~l~v~~l~~L~d~~~p~f~~~~~lLesLA~vks~vl~~ 129 (253)
|.+.+..||..++-||..|.+.+.|+ ..+.. ....+++..+++.+.. ++....+.+.++.+.++=...- -
T Consensus 95 l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~-~~~~~llp~L~~~l~~-----~~~~~~~~~al~~l~~~~~~~~-~ 167 (1230)
T 1u6g_C 95 MLSDKEQLRDISSIGLKTVIGELPPASSGSALAA-NVCKKITGRLTSAIAK-----QEDVSVQLEALDIMADMLSRQG-G 167 (1230)
T ss_dssp TTCSSSHHHHHHHHHHHHHHHHCC-----CCTHH-HHHHHHHHHHHHHHSC-----CSCHHHHHHHHHHHHHHHHHTC-S
T ss_pred hcCCcHHHHHHHHHHHHHHHHhCCCcccccchHH-HHHHHHHHHHHHHHcC-----CCchHHHHHHHHHHHHHHHHhH-h
Confidence 45677889999999999999998886 33432 4567777777777642 2334556666666665321000 0
Q ss_pred cCC-CchH--------------------------------------HHHHHHHHHHHhhccCcchhHHHHHHHHHHHHhc
Q psy10770 130 ELE-DSQE--------------------------------------IFCALFSLMFKIVNDEHSGKVKSFMLDVLCPLIT 170 (253)
Q Consensus 130 DL~-d~d~--------------------------------------Li~~lF~~ff~~v~~~~~~~V~~~m~~Il~~vIe 170 (253)
.+. -.++ ++..+.+.+.+......-......+..|...+=.
T Consensus 168 ~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~ 247 (1230)
T 1u6g_C 168 LLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGH 247 (1230)
T ss_dssp SCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSG
T ss_pred HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHH
Confidence 010 0011 1222222222110000111122222222221100
Q ss_pred cccCCCHHHHHHHHHcccCCcccCChhHHHHHHHHHHHchhhhhHHHHHHhhhhcc
Q psy10770 171 ESDILSHELLDIILMNIVDPQKTQRKNAYLLAKELIVKTNDTLEPYIQNLTRLANA 226 (253)
Q Consensus 171 E~e~vp~~vld~IL~~l~~~~k~~~p~A~~LA~~vi~~c~~kL~~~v~~~f~~~~~ 226 (253)
.....=.+++..++..+-.++......|...-..+++.|.+.++||+.+....++.
T Consensus 248 ~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l~~li~~ll~ 303 (1230)
T 1u6g_C 248 RIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLK 303 (1230)
T ss_dssp GGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhHHHHHHHHHH
Confidence 11111146777777665544333445777778888888998888888877665543
No 12
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=73.27 E-value=43 Score=32.14 Aligned_cols=23 Identities=13% Similarity=0.382 Sum_probs=16.3
Q ss_pred hhcCCCcchHHHHHHHHHHHHhh
Q psy10770 52 FLSHESKDVQLLIACCIADVLRV 74 (253)
Q Consensus 52 LL~HkD~~Vr~~vAcCLadIlRI 74 (253)
||.++|.+||-.+-.+|..|.+.
T Consensus 321 ~L~~~d~~vr~~aL~~L~~i~~~ 343 (618)
T 1w63_A 321 FLLNNDKNIRYVALTSLLKTVQT 343 (618)
T ss_dssp HHTCSSTTTHHHHHHHHHHHHHH
T ss_pred HHhCCCCchHHHHHHHHHHHHhh
Confidence 46677777777777777777764
No 13
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=72.98 E-value=16 Score=36.75 Aligned_cols=176 Identities=11% Similarity=0.134 Sum_probs=83.0
Q ss_pred hhHHHHHHHhhhhhhcCCCcchHHHHHHHHHHHHhhcC------CC------CCCCChHHHHHHHHHHHHHhcCCCCCCC
Q psy10770 39 QYIPLALHIAEDHFLSHESKDVQLLIACCIADVLRVYA------PE------APYKDPDQVKTIFLFLIKQLNGLKDPKD 106 (253)
Q Consensus 39 sl~~~~~~Lv~~~LL~HkD~~Vr~~vAcCLadIlRI~A------Pd------aPy~d~~qLkdIF~l~v~~l~~L~d~~~ 106 (253)
-+.++...+++ .|.+.+..||.++|.+|..++.... |+ .|| +..+++.++..+..-+. .
T Consensus 493 ~l~~~l~~l~~--~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~-----l~~ll~~L~~ll~~~~~--~ 563 (960)
T 1wa5_C 493 QLIELMPILAT--FLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNS-----TEILLKNLIALILKHGS--S 563 (960)
T ss_dssp HHHHHHHHHHH--HTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTT-----HHHHHHHHHHHHHTTCC--C
T ss_pred HHHHHHHHHHH--HhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhh-----HHHHHHHHHHHHHhccC--C
Confidence 35555555655 2556788899999999999988643 22 244 44555555554443210 0
Q ss_pred c-chhHHHHHHHHHHhhhhhheeccC-CCchHHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHhcccc-CCCH----HH
Q psy10770 107 P-AFKRYFYLLENLAYVKSFNMCFEL-EDSQEIFCALFSLMFKIVNDEHSGKVKSFMLDVLCPLITESD-ILSH----EL 179 (253)
Q Consensus 107 p-~f~~~~~lLesLA~vks~vl~~DL-~d~d~Li~~lF~~ff~~v~~~~~~~V~~~m~~Il~~vIeE~e-~vp~----~v 179 (253)
| .....-++++.++.+=... --++ |=++.++..+++.+-...+............+.++.++.-.. ..-. .+
T Consensus 564 ~~~~~~~e~l~~al~~vv~~~-~~~~~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~ 642 (960)
T 1wa5_C 564 PEKLAENEFLMRSIFRVLQTS-EDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSM 642 (960)
T ss_dssp HHHHTSCHHHHHHHHHHHHHH-TTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHH
T ss_pred CCcccccHHHHHHHHHHHHHH-HHhhhhHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHHHHH
Confidence 1 0001124555555432111 0111 114566666666555443332223334445555555554311 1111 22
Q ss_pred HHHHHHcccCCcccCChhHHHHHHHHHHHchhhhhHHHHHHhhhhc
Q psy10770 180 LDIILMNIVDPQKTQRKNAYLLAKELIVKTNDTLEPYIQNLTRLAN 225 (253)
Q Consensus 180 ld~IL~~l~~~~k~~~p~A~~LA~~vi~~c~~kL~~~v~~~f~~~~ 225 (253)
+.++..-+-.......|.++++...+.... +.+.+++.++|.-++
T Consensus 643 ~p~~~~iL~~~~~~~~~~~~~i~~~l~~~~-~~~~~~~~~~~~~l~ 687 (960)
T 1wa5_C 643 MPTFLTVFSEDIQEFIPYVFQIIAFVVEQS-ATIPESIKPLAQPLL 687 (960)
T ss_dssp HHHHHHHHHTTCTTTHHHHHHHHHHHHHHC-SSCCTTTGGGHHHHT
T ss_pred HHHHHHHHHhhhHhhHHHHHHHHHHHHHhc-cCCCHHHHHHHHHHc
Confidence 222221111122233455666666666655 445555555554443
No 14
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=64.16 E-value=86 Score=28.56 Aligned_cols=102 Identities=15% Similarity=0.184 Sum_probs=54.4
Q ss_pred hhcCCC-cchHHHHHHHHHHHHhhcCCCCCCCChHHHHHH-----HHHHHHHhcCCCCCCCcchhHHHHHHHHHHhhhhh
Q psy10770 52 FLSHES-KDVQLLIACCIADVLRVYAPEAPYKDPDQVKTI-----FLFLIKQLNGLKDPKDPAFKRYFYLLENLAYVKSF 125 (253)
Q Consensus 52 LL~HkD-~~Vr~~vAcCLadIlRI~APdaPy~d~~qLkdI-----F~l~v~~l~~L~d~~~p~f~~~~~lLesLA~vks~ 125 (253)
+|++.| .+||..++.||..|..- +++.-+.+ ...++..+ .+++...-.+....|.+++.-
T Consensus 125 lL~~~~~~~v~~~A~~~L~~l~~~--------~~~~~~~~~~~g~i~~L~~lL---~~~~~~v~~~a~~aL~~l~~~--- 190 (528)
T 4b8j_A 125 FLTREDFPQLQFEAAWALTNIASG--------TSENTKVVIDHGAVPIFVKLL---GSSSDDVREQAVWALGNVAGD--- 190 (528)
T ss_dssp HHTCTTCHHHHHHHHHHHHHHHTS--------CHHHHHHHHHTTHHHHHHHHT---TCSCHHHHHHHHHHHHHHHHT---
T ss_pred HhCCCCCHHHHHHHHHHHHHHhCC--------CHHHHHHHHhCCcHHHHHHHh---cCCCHHHHHHHHHHHHHHhCC---
Confidence 566766 89999999999998752 22233333 23334433 443333334455566666531
Q ss_pred heeccCCCchHHHHH--HHHHHHHhhccCcchhHHHHHHHHHHHHhccc
Q psy10770 126 NMCFELEDSQEIFCA--LFSLMFKIVNDEHSGKVKSFMLDVLCPLITES 172 (253)
Q Consensus 126 vl~~DL~d~d~Li~~--lF~~ff~~v~~~~~~~V~~~m~~Il~~vIeE~ 172 (253)
-+.+.+.+.+ ....++...+.+....+.......+..+....
T Consensus 191 -----~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~ 234 (528)
T 4b8j_A 191 -----SPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGK 234 (528)
T ss_dssp -----CHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSS
T ss_pred -----ChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCC
Confidence 1111122222 34455555544445566666666776666554
No 15
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=64.08 E-value=1e+02 Score=31.31 Aligned_cols=150 Identities=12% Similarity=0.218 Sum_probs=94.5
Q ss_pred HHHH-HHHHHHHHhhcCCCCCCCChHHHHHHHHHHHHHhcCCCCCCCcchhHHHHHHHHHHhhhhhheeccCCCc-----
Q psy10770 61 QLLI-ACCIADVLRVYAPEAPYKDPDQVKTIFLFLIKQLNGLKDPKDPAFKRYFYLLENLAYVKSFNMCFELEDS----- 134 (253)
Q Consensus 61 r~~v-AcCLadIlRI~APdaPy~d~~qLkdIF~l~v~~l~~L~d~~~p~f~~~~~lLesLA~vks~vl~~DL~d~----- 134 (253)
|+.+ -.|++-+.|..+-..+|. ..+..++.+ .++|+ |++++ .+..+.+.-++.+=+++.+.|+.++
T Consensus 399 rl~~aL~~l~~~~r~lv~~~~yr--~hl~~lL~l---~LpgI-D~ND~--~KT~~tl~fi~~i~s~ipi~d~s~~~~~~~ 470 (799)
T 1vsy_4 399 RIISSLKQFTRVIRFIVMDKLYR--VHITNVLSM---LVSKL-DMNDT--NLTSNLINGIVSIAAFIPIQDLTGEDDYIS 470 (799)
T ss_dssp HHHHHHHHHHTTHHHHTTSTTGG--GHHHHHHHH---HHHTC-CSSCH--HHHHHHHHHHHHHHHTSCBCCCCCCCTTCC
T ss_pred HHHHHHHHHHHHHHHHhcCcccH--HHHHHHHHH---HhccC-CcccH--HHHHHHHHHHHHHHHhccccccCCcchhhh
Confidence 4433 358899999999888886 255555544 44554 35555 7777888888888888888876632
Q ss_pred -------------------------------------------hHHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHhcc
Q psy10770 135 -------------------------------------------QEIFCALFSLMFKIVNDEHSGKVKSFMLDVLCPLITE 171 (253)
Q Consensus 135 -------------------------------------------d~Li~~lF~~ff~~v~~~~~~~V~~~m~~Il~~vIeE 171 (253)
.+.+.++|.-+|..+..+..+.+...+...+..+...
T Consensus 471 ~~~~~~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~sT~~f~~~v~~f~drvf~llen~~Ee~l~~~l~~~~~~l~~~ 550 (799)
T 1vsy_4 471 FESDTLPLVQQHFYHIKCGESSKTFRVDDELLNNAFKASTTVFQSMLKVYVEKIFQLVDVDLEDSLVTKINQTTMILQES 550 (799)
T ss_dssp HHHHTHHHHHHHHHHHHTTCCSSSCCCCTTHHHHHHHHHTSTHHHHHHHHHHHHHHHTTSCCCTHHHHHHHHHHHHHHHT
T ss_pred hhhhhhhhhhhhhhhhccccccccccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHh
Confidence 2677788888888886655556666666655555554
Q ss_pred ccCCCHHHHHHHHHcccC---Cc--ccCChhHHHH----HHHHHHHchhhhhHHHHHHh
Q psy10770 172 SDILSHELLDIILMNIVD---PQ--KTQRKNAYLL----AKELIVKTNDTLEPYIQNLT 221 (253)
Q Consensus 172 ~e~vp~~vld~IL~~l~~---~~--k~~~p~A~~L----A~~vi~~c~~kL~~~v~~~f 221 (253)
+++++.+..+..+.+ .+ .+...+...| ...+++...+.++..+-...
T Consensus 551 ---lS~~if~~~l~k~~~fv~~n~~~~a~~~v~~L~~~~~~a~~~~~P~~~~~~~p~l~ 606 (799)
T 1vsy_4 551 ---MDDKIFNYFASLLNRNFWSNDSFKEKDPNYELVTIPLAALVRRNNGLSKELVRTLL 606 (799)
T ss_dssp ---BCHHHHHHHHHHHHHHHHSCSCCCSSSCCTHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred ---CCHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 788888877766542 11 1222334445 55666666664454444433
No 16
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=61.10 E-value=96 Score=28.05 Aligned_cols=134 Identities=13% Similarity=0.144 Sum_probs=66.6
Q ss_pred hcCCCcchHHHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHHHhcCCCCCCCcchhHHHHHHHHHHhhhhhheeccCC
Q psy10770 53 LSHESKDVQLLIACCIADVLRVYAPEAPYKDPDQVKTIFLFLIKQLNGLKDPKDPAFKRYFYLLENLAYVKSFNMCFELE 132 (253)
Q Consensus 53 L~HkD~~Vr~~vAcCLadIlRI~APdaPy~d~~qLkdIF~l~v~~l~~L~d~~~p~f~~~~~lLesLA~vks~vl~~DL~ 132 (253)
|++.+..||..++-|+..+.+.+.|+ ..+..++..+.+ +. +++.|..+...++.+..+-..+
T Consensus 450 l~d~~~~Vr~~a~~~l~~l~~~~~~~------~~~~~llp~l~~----~~--~~~~~~~R~~a~~~l~~l~~~~------ 511 (588)
T 1b3u_A 450 LVDHVYAIREAATSNLKKLVEKFGKE------WAHATIIPKVLA----MS--GDPNYLHRMTTLFCINVLSEVC------ 511 (588)
T ss_dssp GGCSSHHHHHHHHHHHHHHHHHHCHH------HHHHHTHHHHHH----TT--TCSCHHHHHHHHHHHHHHHHHH------
T ss_pred hcCCcHHHHHHHHHHHHHHHHHhCch------hHHHHHHHHHHH----Hh--hCCCHHHHHHHHHHHHHHHHhc------
Confidence 56666777777777777777765431 122333333332 22 2445555555555555432211
Q ss_pred CchHHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHhccccC--CCHHHHHHHHHcccCCcccCChhHHHHHHHHHHHc
Q psy10770 133 DSQEIFCALFSLMFKIVNDEHSGKVKSFMLDVLCPLITESDI--LSHELLDIILMNIVDPQKTQRKNAYLLAKELIVKT 209 (253)
Q Consensus 133 d~d~Li~~lF~~ff~~v~~~~~~~V~~~m~~Il~~vIeE~e~--vp~~vld~IL~~l~~~~k~~~p~A~~LA~~vi~~c 209 (253)
+.+....+++..+....++. ..+|+......+..+....+. .++.++..+ ..+. ....+.-+.-|.+.+..+
T Consensus 512 ~~~~~~~~~~~~l~~~l~d~-~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~p~l-~~l~---~d~d~~vr~~a~~al~~l 585 (588)
T 1b3u_A 512 GQDITTKHMLPTVLRMAGDP-VANVRFNVAKSLQKIGPILDNSTLQSEVKPIL-EKLT---QDQDVDVKYFAQEALTVL 585 (588)
T ss_dssp HHHHHHHHTHHHHHHGGGCS-CHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHH-HHHT---TCSSHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhhCCCC-CchHHHHHHHHHHHHHHHhchhhhHHHHHHHH-HHHc---CCCchhHHHHHHHHHHHh
Confidence 12234455555555555433 346777777777777653321 122222222 2332 234455666666655544
No 17
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=56.38 E-value=77 Score=32.23 Aligned_cols=50 Identities=8% Similarity=0.106 Sum_probs=34.9
Q ss_pred HHHHHHHHHcccCCc-ccCChhHHHHHHHHHHHchhhhhHHHHHHhhhhcc
Q psy10770 177 HELLDIILMNIVDPQ-KTQRKNAYLLAKELIVKTNDTLEPYIQNLTRLANA 226 (253)
Q Consensus 177 ~~vld~IL~~l~~~~-k~~~p~A~~LA~~vi~~c~~kL~~~v~~~f~~~~~ 226 (253)
+++++.++..+.... ....|.+..++..++.+..+.+++++.+.+..++.
T Consensus 754 ~~~l~~ll~~~~~~~~~~~~~~~l~l~~~ii~~~~~~~~~~l~~i~~~l~~ 804 (1049)
T 3m1i_C 754 EPLLNAVLEDYMNNVPDARDAEVLNCMTTVVEKVGHMIPQGVILILQSVFE 804 (1049)
T ss_dssp HHHHHHHHHHHHHSCGGGCCTHHHHHHHHHHHHHGGGCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 445556665543211 11347899999999999999999999888776653
No 18
>2i9c_A Hypothetical protein RPA1889; structural genomics, SAD, PSI-2, protein structure initiativ midwest center for structural genomics; HET: MSE; 2.00A {Rhodopseudomonas palustris} SCOP: a.118.1.25
Probab=53.57 E-value=21 Score=28.31 Aligned_cols=63 Identities=11% Similarity=0.009 Sum_probs=35.4
Q ss_pred cCCChhHHHHhHHHHHHHHhhc-CC-Cch----hhhhhHHHHHHHh-h--------hhhhcCCCcchHHHHHHHHHHHHh
Q psy10770 9 SRSKHNYLTFTPQTLAHTLQGM-GQ-DEG----MYQQYIPLALHIA-E--------DHFLSHESKDVQLLIACCIADVLR 73 (253)
Q Consensus 9 ~~~~~~eLlkrLk~L~~~L~~~-dQ-~~~----~~~sl~~~~~~Lv-~--------~~LL~HkD~~Vr~~vAcCLadIlR 73 (253)
+.=+.++|++|--+....=.+- ++ +.. --..+..+..+|. . -.||+|.|.+||+..|| -.||
T Consensus 7 ~~m~v~~Lv~~F~~~~i~q~eA~~~~d~~~~Nr~~~kl~~~~~eLk~r~Gd~R~aLl~Ll~H~n~~VRl~AA~---~~L~ 83 (123)
T 2i9c_A 7 HQMTTQDLVALFAKVTVEQDDALLGNQISRFNRLFGVMAEIADELKARDGDQRTALLSLFEYPNMQVRLQAAK---LTLA 83 (123)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHSTTCGGGGGGGGGGSSCHHHHHHHHH---TTTT
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhCCCccHHHHHHH---HHHh
Confidence 3345666776666554432221 11 111 1133444555555 2 25899999999999995 5566
Q ss_pred h
Q psy10770 74 V 74 (253)
Q Consensus 74 I 74 (253)
+
T Consensus 84 ~ 84 (123)
T 2i9c_A 84 V 84 (123)
T ss_dssp T
T ss_pred h
Confidence 4
No 19
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=50.67 E-value=97 Score=25.59 Aligned_cols=94 Identities=16% Similarity=0.130 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCcchhHHHHHHHHHHhhhhhheeccCCCchHHHHHHHHHHHHhhccCcchhH-------
Q psy10770 85 DQVKTIFLFLIKQLNGLKDPKDPAFKRYFYLLENLAYVKSFNMCFELEDSQEIFCALFSLMFKIVNDEHSGKV------- 157 (253)
Q Consensus 85 ~qLkdIF~l~v~~l~~L~d~~~p~f~~~~~lLesLA~vks~vl~~DL~d~d~Li~~lF~~ff~~v~~~~~~~V------- 157 (253)
+.++|+|+--+.+++- ..+.++++|.||.=+.|..+.+ -|.+.| .++|+...+. ...+ .+|
T Consensus 36 ~rlrd~YerAia~~Pp---~k~~~wrrYI~LWIrYA~~~ei---~D~d~a----R~vy~~a~~~-hKkF-AKiwi~~AqF 103 (161)
T 4h7y_A 36 NKLIGRYSQAIEALPP---DKYGQNESFARIQVRFAELKAI---QEPDDA----RDYFQMARAN-CKKF-AFVHISFAQF 103 (161)
T ss_dssp HHHHHHHHHHHHHSCG---GGGTTCHHHHHHHHHHHHHHHH---HCGGGC----HHHHHHHHHH-CTTB-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCc---cccccHHHHHHHHHHHHHHHHh---cCHHHH----HHHHHHHHHH-hHHH-HHHHHHHHHH
Confidence 3556788866666652 2367999999999999988643 677777 5667766553 3322 111
Q ss_pred ------HHHHHHHHHHHhccccCCCHHHHHHHHHcccCCc
Q psy10770 158 ------KSFMLDVLCPLITESDILSHELLDIILMNIVDPQ 191 (253)
Q Consensus 158 ------~~~m~~Il~~vIeE~e~vp~~vld~IL~~l~~~~ 191 (253)
...-..||..-|.- ...|.+++..-+.++-.+.
T Consensus 104 EiRqgnl~kARkILg~AiG~-~~k~~~~le~a~~nl~~~~ 142 (161)
T 4h7y_A 104 ELSQGNVKKSKQLLQKAVER-GAVPLEMLEIALRNLNLQK 142 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHT-TCBCHHHHHHHHHHHHTTC
T ss_pred HHHcccHHHHHHHHHHHhcc-CCCcHHHHHHHHHhhhcCC
Confidence 14456677787874 4779999999999886543
No 20
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=45.75 E-value=1.2e+02 Score=24.60 Aligned_cols=139 Identities=10% Similarity=0.044 Sum_probs=91.3
Q ss_pred hhcCCCcchHHHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHHHhcCCCCCCCcchhHHHHHHHHHHhhhhhheeccC
Q psy10770 52 FLSHESKDVQLLIACCIADVLRVYAPEAPYKDPDQVKTIFLFLIKQLNGLKDPKDPAFKRYFYLLENLAYVKSFNMCFEL 131 (253)
Q Consensus 52 LL~HkD~~Vr~~vAcCLadIlRI~APdaPy~d~~qLkdIF~l~v~~l~~L~d~~~p~f~~~~~lLesLA~vks~vl~~DL 131 (253)
.++.+|-.+|--.+-+|..++.- .|+.. . ....+++..+...+. .|++..-.......|..+++. +--
T Consensus 23 ~l~s~~w~~R~~a~~~L~~l~~~-~~~~~--~-~~~~~i~~~L~~~l~--kd~~~~V~~~a~~~l~~la~~----l~~-- 90 (242)
T 2qk2_A 23 KLEEKKWTLRKESLEVLEKLLTD-HPKLE--N-GEYGALVSALKKVIT--KDSNVVLVAMAGKCLALLAKG----LAK-- 90 (242)
T ss_dssp HHTCSSHHHHHHHHHHHHHHHHH-CSSBC--C-CCCHHHHHHHHHHHH--HCSCHHHHHHHHHHHHHHHHH----HGG--
T ss_pred hhccCCHHHHHHHHHHHHHHHcc-CCCCC--C-CCHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHHHHH----Hhh--
Confidence 45678999999999999999986 34422 2 234677777777662 144444455666666666631 111
Q ss_pred CCchHHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHhccccCCCHHHHHHHHHcccCCcccCChhHHHHHHHHHHHch
Q psy10770 132 EDSQEIFCALFSLMFKIVNDEHSGKVKSFMLDVLCPLITESDILSHELLDIILMNIVDPQKTQRKNAYLLAKELIVKTN 210 (253)
Q Consensus 132 ~d~d~Li~~lF~~ff~~v~~~~~~~V~~~m~~Il~~vIeE~e~vp~~vld~IL~~l~~~~k~~~p~A~~LA~~vi~~c~ 210 (253)
+-...+..++..+++..++. ...|+......+..+++... ...++..++..+- ..+|..+.-+-..+..+.
T Consensus 91 -~~~~~~~~ilp~ll~~l~d~-~~~vr~~a~~aL~~~~~~~~--~~~ll~~l~~~l~----~~~~~vr~~~l~~l~~~l 161 (242)
T 2qk2_A 91 -RFSNYASACVPSLLEKFKEK-KPNVVTALREAIDAIYASTS--LEAQQESIVESLS----NKNPSVKSETALFIARAL 161 (242)
T ss_dssp -GGHHHHHHHHHHHHHGGGCC-CHHHHHHHHHHHHHHHTTSC--HHHHHHHHHHHTT----CSCHHHHHHHHHHHHHHH
T ss_pred -hHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHc----CCChHHHHHHHHHHHHHH
Confidence 23457777888888877654 45788888888888887653 3567777775553 235677777777777654
No 21
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=45.26 E-value=1.3e+02 Score=25.26 Aligned_cols=140 Identities=11% Similarity=0.152 Sum_probs=67.9
Q ss_pred hhcCCCcchHHHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHHH-h-cCCCCCCCcchhHHHHHHHHHHhhhhhheec
Q psy10770 52 FLSHESKDVQLLIACCIADVLRVYAPEAPYKDPDQVKTIFLFLIKQ-L-NGLKDPKDPAFKRYFYLLENLAYVKSFNMCF 129 (253)
Q Consensus 52 LL~HkD~~Vr~~vAcCLadIlRI~APdaPy~d~~qLkdIF~l~v~~-l-~~L~d~~~p~f~~~~~lLesLA~vks~vl~~ 129 (253)
.+.-+|.-|..-..-|+..+...+.+..... .........++.. + ++|+++....-......|-.+.+
T Consensus 63 ~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~--~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~-------- 132 (278)
T 4ffb_C 63 YITDSNVVAQEQAIVALNSLIDAFASSSLKN--AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCG-------- 132 (278)
T ss_dssp HTTCSSHHHHHHHHHHHHHHHTTCC---CCH--HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHH--------
T ss_pred HhccchHHHHHHHHHHHHHHHHHhhhhhccc--chhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHH--------
Confidence 4445555566666778888888777765433 1233333333333 2 35676543322222333322221
Q ss_pred cCCC-chHHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHhccc--cCCC-HHHHHHHHHcc----cCCcccCChhHHHH
Q psy10770 130 ELED-SQEIFCALFSLMFKIVNDEHSGKVKSFMLDVLCPLITES--DILS-HELLDIILMNI----VDPQKTQRKNAYLL 201 (253)
Q Consensus 130 DL~d-~d~Li~~lF~~ff~~v~~~~~~~V~~~m~~Il~~vIeE~--e~vp-~~vld~IL~~l----~~~~k~~~p~A~~L 201 (253)
... .+.+ ++.+.......+ .++.......|..++.+. ..++ ...++.++..+ -.+++....+|..+
T Consensus 133 -~~~~~~~~----~e~l~~~l~~Kn-pkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l 206 (278)
T 4ffb_C 133 -LDTSITQS----VELVIPFFEKKL-PKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNL 206 (278)
T ss_dssp -TSSSSHHH----HHHHGGGGGCSC-HHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHH
T ss_pred -hcCcHHHH----HHHHHHHHhccC-HHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHH
Confidence 111 1222 233333333333 467777778888888884 3455 34455555433 33444455555555
Q ss_pred HHHHHH
Q psy10770 202 AKELIV 207 (253)
Q Consensus 202 A~~vi~ 207 (253)
..++.+
T Consensus 207 ~~~ly~ 212 (278)
T 4ffb_C 207 IVEIYK 212 (278)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 555544
No 22
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=44.90 E-value=1.1e+02 Score=27.77 Aligned_cols=118 Identities=12% Similarity=0.157 Sum_probs=60.5
Q ss_pred hhhcCCCcchHHHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHHHhcCCCCCCCcchhHHHHHHHHHHhhhhhheecc
Q psy10770 51 HFLSHESKDVQLLIACCIADVLRVYAPEAPYKDPDQVKTIFLFLIKQLNGLKDPKDPAFKRYFYLLENLAYVKSFNMCFE 130 (253)
Q Consensus 51 ~LL~HkD~~Vr~~vAcCLadIlRI~APdaPy~d~~qLkdIF~l~v~~l~~L~d~~~p~f~~~~~lLesLA~vks~vl~~D 130 (253)
.++++.|..||..++-++..+.+...++ ....+++..+...+ .|++ + .-+..-++.+..+-. .
T Consensus 171 ~l~~d~~~~VR~~a~~~l~~l~~~~~~~------~~~~~l~~~l~~~~---~d~~-~--~vr~~a~~~l~~l~~-----~ 233 (588)
T 1b3u_A 171 NLCSDDTPMVRRAAASKLGEFAKVLELD------NVKSEIIPMFSNLA---SDEQ-D--SVRLLAVEACVNIAQ-----L 233 (588)
T ss_dssp HHHTCSCHHHHHHHHHHHHHHHHTSCHH------HHHHTHHHHHHHHH---TCSC-H--HHHTTHHHHHHHHHH-----H
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHHhcHH------hHHHHHHHHHHHHh---cCCc-H--HHHHHHHHHHHHHHH-----h
Confidence 4567889999999999999998875331 22344555555444 2332 2 222233333332211 1
Q ss_pred CCCchHHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHhcccc--CCCHHHHHHHHHcc
Q psy10770 131 LEDSQEIFCALFSLMFKIVNDEHSGKVKSFMLDVLCPLITESD--ILSHELLDIILMNI 187 (253)
Q Consensus 131 L~d~d~Li~~lF~~ff~~v~~~~~~~V~~~m~~Il~~vIeE~e--~vp~~vld~IL~~l 187 (253)
++ .++....+...+....+ +.+..|+......+..+.+..+ ....+++..++.-+
T Consensus 234 ~~-~~~~~~~~~~~l~~~~~-d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l 290 (588)
T 1b3u_A 234 LP-QEDLEALVMPTLRQAAE-DKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLM 290 (588)
T ss_dssp SC-HHHHHHHTHHHHHHHHT-CSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHH
T ss_pred CC-HHHHHHHHHHHHHHHcc-CCCHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHh
Confidence 12 22232333333333332 3445677777777777665321 22345566655443
No 23
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=44.35 E-value=2.9e+02 Score=28.58 Aligned_cols=151 Identities=17% Similarity=0.261 Sum_probs=79.1
Q ss_pred CcchHHHHHHHHHHHHhhcCCCC--CCCChHHHHHHHHHHHHHh-cCC-------------CCCCCc-chhHHHHHHHHH
Q psy10770 57 SKDVQLLIACCIADVLRVYAPEA--PYKDPDQVKTIFLFLIKQL-NGL-------------KDPKDP-AFKRYFYLLENL 119 (253)
Q Consensus 57 D~~Vr~~vAcCLadIlRI~APda--Py~d~~qLkdIF~l~v~~l-~~L-------------~d~~~p-~f~~~~~lLesL 119 (253)
+.++|-.++-||.+|++.-.|.. -|+ +.+-.+|.-+..++ ..+ ++.++. +.+....++-.+
T Consensus 247 ~~~~r~~A~ecL~eIv~~~~~~~~~~~~--~~l~~lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~ 324 (1023)
T 4hat_C 247 SPDTRAITLKCLTEVSNLKIPQDNDLIK--RQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTY 324 (1023)
T ss_dssp SHHHHHHHHHHHHHHHTSCCCSSCHHHH--HHHHHHHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHccccCCchHHHH--HHHHHHHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHH
Confidence 56799999999999998654311 243 46777777766555 222 111222 333455566666
Q ss_pred HhhhhhheeccCCCchHHHHHHHHHHHHhhccCcchhHHHHHH----HHHHHHhcc------ccCCCHHHHHHHHHcccC
Q psy10770 120 AYVKSFNMCFELEDSQEIFCALFSLMFKIVNDEHSGKVKSFML----DVLCPLITE------SDILSHELLDIILMNIVD 189 (253)
Q Consensus 120 A~vks~vl~~DL~d~d~Li~~lF~~ff~~v~~~~~~~V~~~m~----~Il~~vIeE------~e~vp~~vld~IL~~l~~ 189 (253)
.+...-.+.-+ ++..+++....+.++....-+ ...+...-. .+...+..| ...+=..++++++.....
T Consensus 325 ~e~~~~li~~~-~~~~~~l~~~l~~Ll~~~~~~-d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~ 402 (1023)
T 4hat_C 325 LARNRALLESD-ESLRELLLNAHQYLIQLSKIE-ERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVR 402 (1023)
T ss_dssp HHHHGGGGTSC-GGGHHHHHHHHHHHHHHTTSS-CHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHhCC-cchhHHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCC
Confidence 66555433222 333566666666666654322 233322211 122233333 111223567777766665
Q ss_pred Cc-------c-----------cCChhHHHHHHHHHHHchh
Q psy10770 190 PQ-------K-----------TQRKNAYLLAKELIVKTND 211 (253)
Q Consensus 190 ~~-------k-----------~~~p~A~~LA~~vi~~c~~ 211 (253)
|. - +..-..|+-.++++..+..
T Consensus 403 P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~L~~l~~ 442 (1023)
T 4hat_C 403 PEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTH 442 (1023)
T ss_dssp CTTCCEEECTTSCEEECSSCCGGGHHHHHHHHHHHHHHHH
T ss_pred CcccccCCCCCccHHHHhccchHHHHHHHHHHHHHHHHhc
Confidence 53 1 1123667777777766543
No 24
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=40.67 E-value=1.6e+02 Score=24.65 Aligned_cols=144 Identities=10% Similarity=0.043 Sum_probs=82.2
Q ss_pred hhcCCCcchHHHHHHHHHH-HHhhcCCCCCCCChHHHHHHHHHHHHHhcCCCCCCCcchhHHHHHHHHHHhhhhhheecc
Q psy10770 52 FLSHESKDVQLLIACCIAD-VLRVYAPEAPYKDPDQVKTIFLFLIKQLNGLKDPKDPAFKRYFYLLENLAYVKSFNMCFE 130 (253)
Q Consensus 52 LL~HkD~~Vr~~vAcCLad-IlRI~APdaPy~d~~qLkdIF~l~v~~l~~L~d~~~p~f~~~~~lLesLA~vks~vl~~D 130 (253)
.+.+++-.-|.-+..+|.. ++.= .|+..-.+ ....++++.+...+. .|++..-=......|..+|+. +-
T Consensus 24 ~l~s~~w~eRk~al~~L~~~~~~~-~~~i~~~~-~~~~~~~~~L~~~l~--~D~n~~v~~~A~~al~~la~~----l~-- 93 (249)
T 2qk1_A 24 RITSSKWKDRVEALEEFWDSVLSQ-TKKLKSTS-QNYSNLLGIYGHIIQ--KDANIQAVALAAQSVELICDK----LK-- 93 (249)
T ss_dssp HHTCSSHHHHHHHHHHHHHHTGGG-CCCBCCTT-CCCHHHHHHHHHHHH--HCSCHHHHHHHHHHHHHHHHH----HC--
T ss_pred HhhcCCHHHHHHHHHHHHHHHHhc-CCccccCc-ccHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHHHHh----cc--
Confidence 3567788888888888888 8742 44433212 123455666666552 233322234555566666521 11
Q ss_pred CCCch-HHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHhcccc-----CCCHHHHHHHHHcccCCcccCChhHHHHHHH
Q psy10770 131 LEDSQ-EIFCALFSLMFKIVNDEHSGKVKSFMLDVLCPLITESD-----ILSHELLDIILMNIVDPQKTQRKNAYLLAKE 204 (253)
Q Consensus 131 L~d~d-~Li~~lF~~ff~~v~~~~~~~V~~~m~~Il~~vIeE~e-----~vp~~vld~IL~~l~~~~k~~~p~A~~LA~~ 204 (253)
-++-. .-...++-.+++...+.. ..|......-+..+++..+ .-...+++.|+..+-.+ +|..+.-+-.
T Consensus 94 ~~~f~~~y~~~llp~ll~~l~dkk-~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k----~~~vk~~al~ 168 (249)
T 2qk1_A 94 TPGFSKDYVSLVFTPLLDRTKEKK-PSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHK----TPQIRMECTQ 168 (249)
T ss_dssp TTTSCHHHHHHHHHHHHHGGGCCC-HHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCS----SHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCC----ChHHHHHHHH
Confidence 01223 455666677777765544 5677777777777777653 22567888888665433 4556666655
Q ss_pred HHHHch
Q psy10770 205 LIVKTN 210 (253)
Q Consensus 205 vi~~c~ 210 (253)
.+.+|.
T Consensus 169 ~l~~~~ 174 (249)
T 2qk1_A 169 LFNASM 174 (249)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555555
No 25
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=39.00 E-value=24 Score=25.54 Aligned_cols=30 Identities=20% Similarity=0.337 Sum_probs=22.0
Q ss_pred HHHHHhhcCC-CCCCC--ChHHHHHHHHHHHHH
Q psy10770 68 IADVLRVYAP-EAPYK--DPDQVKTIFLFLIKQ 97 (253)
Q Consensus 68 LadIlRI~AP-daPy~--d~~qLkdIF~l~v~~ 97 (253)
|..+||.++| ++||+ +.+||++...-.++.
T Consensus 28 Ih~mLkmf~~~~~~~~~it~~eL~~fL~~~v~e 60 (74)
T 1ldd_A 28 IHSFLKITVPKDWGYNRITLQQLEGYLNTLADE 60 (74)
T ss_dssp HHHHHHHHSCGGGCCTTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCCCCCCcCCHHHHHHHHHHHHhC
Confidence 5678999998 57886 347898877765553
No 26
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=38.28 E-value=2.7e+02 Score=26.57 Aligned_cols=162 Identities=9% Similarity=0.099 Sum_probs=88.7
Q ss_pred hcCCCcchHHHHHHHHHHHHhhcC-------CC-----CCCCChHHHHHHHHHHHHHhcCCCCCCCcchhHHHHHHHHHH
Q psy10770 53 LSHESKDVQLLIACCIADVLRVYA-------PE-----APYKDPDQVKTIFLFLIKQLNGLKDPKDPAFKRYFYLLENLA 120 (253)
Q Consensus 53 L~HkD~~Vr~~vAcCLadIlRI~A-------Pd-----aPy~d~~qLkdIF~l~v~~l~~L~d~~~p~f~~~~~lLesLA 120 (253)
|++ +..||..++.||..+.+-+. |+ ..+. ..+..|...+++.+..-.. ++ ..-+...++.++
T Consensus 460 l~~-~~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~--~~~~~il~~L~~~l~~~~~-~~--~~~r~~~~~~l~ 533 (876)
T 1qgr_A 460 LSA-EPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLS--SSFELIVQKLLETTDRPDG-HQ--NNLRSSAYESLM 533 (876)
T ss_dssp TTS-CHHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSST--TTHHHHHHHHHHHTTSCSS-CS--TTHHHHHHHHHH
T ss_pred HcC-CHHHHHHHHHHHHHHHHHhhhccccccccccccchhhh--HhHHHHHHHHHHHHhCcCc-ch--hhHHHHHHHHHH
Confidence 444 38899999999999998764 32 1122 2456777777777764321 12 223345666666
Q ss_pred hhhhhheeccCCCchHHHHHHHHHHHHhhcc-----------Ccc---hhHHHHHHHHHHHHhcccc-----CCCHHHHH
Q psy10770 121 YVKSFNMCFELEDSQEIFCALFSLMFKIVND-----------EHS---GKVKSFMLDVLCPLITESD-----ILSHELLD 181 (253)
Q Consensus 121 ~vks~vl~~DL~d~d~Li~~lF~~ff~~v~~-----------~~~---~~V~~~m~~Il~~vIeE~e-----~vp~~vld 181 (253)
.+-..+- .+....+..++..+.+.... +.+ ..++..+...+..++...+ ..-++++.
T Consensus 534 ~l~~~~~----~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~ 609 (876)
T 1qgr_A 534 EIVKNSA----KDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMA 609 (876)
T ss_dssp HHHHTCC----STTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHH
T ss_pred HHHHHCc----hhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHH
Confidence 5433221 13445555666655554432 111 3455666777777765443 22345666
Q ss_pred HHHHcccCCc-c-cCChhHHHHHHHHHHHchhhhhHHHHHHhhhh
Q psy10770 182 IILMNIVDPQ-K-TQRKNAYLLAKELIVKTNDTLEPYIQNLTRLA 224 (253)
Q Consensus 182 ~IL~~l~~~~-k-~~~p~A~~LA~~vi~~c~~kL~~~v~~~f~~~ 224 (253)
.++.-+..+. + ...-.+...-..++..+...+.+|+.+++.-+
T Consensus 610 ~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l 654 (876)
T 1qgr_A 610 SLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFL 654 (876)
T ss_dssp HHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHH
T ss_pred HHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 6664444332 1 12234555556667777777777777665444
No 27
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=34.78 E-value=2e+02 Score=28.50 Aligned_cols=91 Identities=16% Similarity=0.219 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHhhccCcchhHHHHHHHHHHH---HhccccCCCHHHHHHHHHcccCCcccCChhHHHHHHHHHHHchhh
Q psy10770 136 EIFCALFSLMFKIVNDEHSGKVKSFMLDVLCP---LITESDILSHELLDIILMNIVDPQKTQRKNAYLLAKELIVKTNDT 212 (253)
Q Consensus 136 ~Li~~lF~~ff~~v~~~~~~~V~~~m~~Il~~---vIeE~e~vp~~vld~IL~~l~~~~k~~~p~A~~LA~~vi~~c~~k 212 (253)
+.+.++|+.+...-..+....|+......+.. .+.+....=+.++..|+..+ . ......|...-.++|+.|.+.
T Consensus 501 ~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~~~ 577 (971)
T 2x1g_F 501 RQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIPPAINLLVRGL-N--SSMSAQATLGLKELCRDCQLQ 577 (971)
T ss_dssp CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHHHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHHHh
Confidence 45667777554443222233555554444443 33332233345666666555 2 334455555556899999999
Q ss_pred hhHHHHHHhhhhcccCC
Q psy10770 213 LEPYIQNLTRLANAVFP 229 (253)
Q Consensus 213 L~~~v~~~f~~~~~~~~ 229 (253)
|.||+.+..+.+.--++
T Consensus 578 l~p~~~~ll~~l~~~l~ 594 (971)
T 2x1g_F 578 LKPYADPLLNACHASLN 594 (971)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHc
Confidence 99999887775543333
No 28
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=34.06 E-value=1.9e+02 Score=30.30 Aligned_cols=92 Identities=9% Similarity=0.112 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHhhccCcchhHHHHHHHHHHH---HhccccCCCHHHHHHHHHcccC--C----------cccCChhHHH
Q psy10770 136 EIFCALFSLMFKIVNDEHSGKVKSFMLDVLCP---LITESDILSHELLDIILMNIVD--P----------QKTQRKNAYL 200 (253)
Q Consensus 136 ~Li~~lF~~ff~~v~~~~~~~V~~~m~~Il~~---vIeE~e~vp~~vld~IL~~l~~--~----------~k~~~p~A~~ 200 (253)
.++.++++.+..+ +.++|. +......++.. -++.....=+.+|+-||..+.. + .|....+|-.
T Consensus 529 ~~~~~Ll~~ll~~-~~~~p~-l~~~~i~~l~~l~~~~~~~p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~ 606 (1204)
T 3a6p_A 529 NDGIELLQMVLNF-DTKDPL-ILSCVLTNVSALFPFVTYRPEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACS 606 (1204)
T ss_dssp HHHHHHHHHHHHC-CCSCHH-HHHHHHHHHHHHGGGGGTCGGGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCChH-HHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhhccCCcccccccccHHHHHHHHHHHH
Confidence 4667777765543 345665 44444444333 3332222224456666655432 1 1122233333
Q ss_pred HHHHHHHHchhhhhHHHHHHhhhhcccCC
Q psy10770 201 LAKELIVKTNDTLEPYIQNLTRLANAVFP 229 (253)
Q Consensus 201 LA~~vi~~c~~kL~~~v~~~f~~~~~~~~ 229 (253)
.-+.+|..|.+.|.|++.++.+.+-.-++
T Consensus 607 al~~L~~~~~~~L~p~~~~i~~~~~~~l~ 635 (1204)
T 3a6p_A 607 SIIKMCRDYPQLVLPNFDMLYNHVKQLLS 635 (1204)
T ss_dssp HHHHHHHHCHHHHGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHh
Confidence 44489999999999999988875543333
No 29
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=32.51 E-value=3.5e+02 Score=27.67 Aligned_cols=107 Identities=14% Similarity=0.143 Sum_probs=68.9
Q ss_pred hhhHHHHHHHhhhhhhcCCCcchHHHHHHHHHHHHhhcCCC-CCCCChHHHHHHHHHHHHHhcCCCCCC-----------
Q psy10770 38 QQYIPLALHIAEDHFLSHESKDVQLLIACCIADVLRVYAPE-APYKDPDQVKTIFLFLIKQLNGLKDPK----------- 105 (253)
Q Consensus 38 ~sl~~~~~~Lv~~~LL~HkD~~Vr~~vAcCLadIlRI~APd-aPy~d~~qLkdIF~l~v~~l~~L~d~~----------- 105 (253)
+-+.++...+.++.-+.|+++.||..+|.-+..+.+-+.+. .||- .+|.+-+-..+..=..+.
T Consensus 531 ~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~~~-----~~il~~l~~lL~~~~~~~~~~~~~~~~~~ 605 (980)
T 3ibv_A 531 AAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNYT-----ESSLAMLGDLLNISVSPVTDMDAPVPTLN 605 (980)
T ss_dssp TTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSSSH-----HHHHHHTTGGGCCCCCCCCC--CSSCCHH
T ss_pred hhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhhHH-----HHHHHHHHHhhcCcCCCCCcccccccchh
Confidence 45678888888888889999999999999999999998887 4664 334444433333111111
Q ss_pred ----CcchhHHHHHHHHHHhhhhhheeccCCC----chHHHHHHHHHHHHhhc
Q psy10770 106 ----DPAFKRYFYLLENLAYVKSFNMCFELED----SQEIFCALFSLMFKIVN 150 (253)
Q Consensus 106 ----~p~f~~~~~lLesLA~vks~vl~~DL~d----~d~Li~~lF~~ff~~v~ 150 (253)
+..|....|+.|.++.+=+..- .+.++ .+.++..+|+.+=..++
T Consensus 606 ~~~~~~~~~~ql~L~eaig~li~~~~-~~~e~~~~~l~~ll~pl~~~l~~~l~ 657 (980)
T 3ibv_A 606 SSIRNSDFNSQLYLFETVGVLISSGN-LTPEEQALYCDSLINALIGKANAALS 657 (980)
T ss_dssp HHHHTTTHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhcccCCchHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1257889999999997655422 11111 13455555555555553
No 30
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=31.34 E-value=2.9e+02 Score=26.45 Aligned_cols=114 Identities=14% Similarity=0.149 Sum_probs=67.7
Q ss_pred hhcCCCc--chHHHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHHHhcCCCCCCCcchhHHHHHHHHHHhhhhhheec
Q psy10770 52 FLSHESK--DVQLLIACCIADVLRVYAPEAPYKDPDQVKTIFLFLIKQLNGLKDPKDPAFKRYFYLLENLAYVKSFNMCF 129 (253)
Q Consensus 52 LL~HkD~--~Vr~~vAcCLadIlRI~APdaPy~d~~qLkdIF~l~v~~l~~L~d~~~p~f~~~~~lLesLA~vks~vl~~ 129 (253)
.|+|++. .|-.-++.|+..+- | +++.++.....+.+-+ . ++...-++..|+++..+-...
T Consensus 299 ~l~~~n~~~aVl~ea~~~i~~l~-------~--~~~~~~~~~~~L~~~L---~---~~~~niry~aL~~l~~l~~~~--- 360 (621)
T 2vgl_A 299 KVQHSNAKNAVLFEAISLIIHHD-------S--EPNLLVRACNQLGQFL---Q---HRETNLRYLALESMCTLASSE--- 360 (621)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHC-------C--CHHHHHHHHHHHHHHS---S---CSCHHHHHHHHHHHHHHTTCT---
T ss_pred cccccchHHHHHHHHHHHHHhcC-------C--cHHHHHHHHHHHHHHh---c---CCCcchHHHHHHHHHHHHhcc---
Confidence 5667666 66666666666542 2 2334555555544443 2 122245566778887653211
Q ss_pred cCCCchHHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHhccccCCCHHHHHHHHHccc
Q psy10770 130 ELEDSQEIFCALFSLMFKIVNDEHSGKVKSFMLDVLCPLITESDILSHELLDIILMNIV 188 (253)
Q Consensus 130 DL~d~d~Li~~lF~~ff~~v~~~~~~~V~~~m~~Il~~vIeE~e~vp~~vld~IL~~l~ 188 (253)
++ .+.+.+....|+...+.+....|...-.+++..+.+|.. + .+++..++..+.
T Consensus 361 --~~-~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~~N-v-~~Iv~eL~~yl~ 414 (621)
T 2vgl_A 361 --FS-HEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCDRSN-A-QQIVAEMLSYLE 414 (621)
T ss_dssp --TT-HHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCHHH-H-HHHHHHHHHHHH
T ss_pred --Cc-HHHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHcChhh-H-HHHHHHHHHHHH
Confidence 21 256677778888877745556799999999999988853 1 445555554443
No 31
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=30.83 E-value=1.4e+02 Score=29.59 Aligned_cols=162 Identities=12% Similarity=0.081 Sum_probs=79.4
Q ss_pred CcchHHHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHHHhcCCCC-CCCc-chhHHHHHHHHHHhhhhhheecc---C
Q psy10770 57 SKDVQLLIACCIADVLRVYAPEAPYKDPDQVKTIFLFLIKQLNGLKD-PKDP-AFKRYFYLLENLAYVKSFNMCFE---L 131 (253)
Q Consensus 57 D~~Vr~~vAcCLadIlRI~APdaPy~d~~qLkdIF~l~v~~l~~L~d-~~~p-~f~~~~~lLesLA~vks~vl~~D---L 131 (253)
+.++|.++-.|++.+..- +| |=.-...+..+...+...+..+.+ +.++ ...+..+.++.++.+=..+--.. .
T Consensus 583 ~~~~~~~~~eai~~i~~~-~~--~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~ 659 (963)
T 2x19_B 583 KTSQCMWLMQALGFLLSA-LQ--VEEILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDD 659 (963)
T ss_dssp CHHHHHHHHHHHHHHHTT-SC--HHHHHHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC--
T ss_pred ChHHHHHHHHHHHHHHhc-CC--HHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCccccc
Confidence 568999999999999864 33 100011233444444454543322 2233 33556678888865443332110 0
Q ss_pred --------------CC-chHHHHHHHHHHHHhhccC-cchhHHHHHHHHHHHHhccccC--CC--HHHHHHHHHcccCCc
Q psy10770 132 --------------ED-SQEIFCALFSLMFKIVNDE-HSGKVKSFMLDVLCPLITESDI--LS--HELLDIILMNIVDPQ 191 (253)
Q Consensus 132 --------------~d-~d~Li~~lF~~ff~~v~~~-~~~~V~~~m~~Il~~vIeE~e~--vp--~~vld~IL~~l~~~~ 191 (253)
++ ...+..+++..+..+.+.. ....+...+...+..++..... .| +++++.++..+..
T Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~-- 737 (963)
T 2x19_B 660 HEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFAPMVPQLCEMLGRMYST-- 737 (963)
T ss_dssp -------------CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTTGGGHHHHHHHHHHHHHH--
T ss_pred ccccccccCCCCCCCCchHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHc--
Confidence 00 1224444444444444321 2235555555566665543221 22 4455555543322
Q ss_pred ccCChhHHHHHHHHHH--HchhhhhHHHHHHhhhh
Q psy10770 192 KTQRKNAYLLAKELIV--KTNDTLEPYIQNLTRLA 224 (253)
Q Consensus 192 k~~~p~A~~LA~~vi~--~c~~kL~~~v~~~f~~~ 224 (253)
...+..-.++..++. +..+...+.+.++++.+
T Consensus 738 -~~~~~~l~l~~~li~~f~~~~~~~~~~~~~l~~~ 771 (963)
T 2x19_B 738 -IPQASALDLTRQLVHIFAHEPAHFPPIEALFLLV 771 (963)
T ss_dssp -SCCHHHHHHHHHHHHHHTTCTTTCHHHHHHHHHH
T ss_pred -CCccHHHHHHHHHHHHhCCCcchHHHHHHHHHHH
Confidence 235666778888877 44444555555554433
No 32
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=30.55 E-value=2e+02 Score=25.41 Aligned_cols=138 Identities=13% Similarity=0.103 Sum_probs=63.9
Q ss_pred CChhHHHHhHHHHHHHHhh-cCCCchhhhhhHHHHHHHhhhhhhcCCCcchHHHHH---------HHHHHHHhhcCCCCC
Q psy10770 11 SKHNYLTFTPQTLAHTLQG-MGQDEGMYQQYIPLALHIAEDHFLSHESKDVQLLIA---------CCIADVLRVYAPEAP 80 (253)
Q Consensus 11 ~~~~eLlkrLk~L~~~L~~-~dQ~~~~~~sl~~~~~~Lv~~~LL~HkD~~Vr~~vA---------cCLadIlRI~APdaP 80 (253)
-+.+.++++|+++-+.+.. ..-.+.+..++..+.+.|.+..==.-.+.++.++.- --+.|++|+.+.++.
T Consensus 55 an~~~i~~KL~EfN~~~~~~~~Ls~~el~~L~~l~~~l~~~s~~~~~~~~l~~l~kil~WP~~~~fPvLDLlRl~~l~p~ 134 (304)
T 3ebb_A 55 ANPTQILGKLKELNGTAPEEKKLTEDDLILLEKILSLICNSSSEKPTVQQLQILWKAINCPEDIVFPALDILRLSIKHPS 134 (304)
T ss_dssp CCHHHHHHHHHHHHTTSCGGGCCCHHHHHHHHHHHHHHHTTCSSCCCHHHHHHHHHHHTSCTTTCHHHHHHHHHHTTSHH
T ss_pred cCHHHHHHHHHHHHHccccccCcCHHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHcCCHHhHHHHHHHHHHHHcCcc
Confidence 4677888888887776544 111245556666666655432100000011122221 145799999887654
Q ss_pred CCC----hHHHHHHHHHHHHHhcCCCCCCCcchhHHHHHHHHHHhhhhhheeccCCCchHHHHHHHHHHHHhhcc---Cc
Q psy10770 81 YKD----PDQVKTIFLFLIKQLNGLKDPKDPAFKRYFYLLENLAYVKSFNMCFELEDSQEIFCALFSLMFKIVND---EH 153 (253)
Q Consensus 81 y~d----~~qLkdIF~l~v~~l~~L~d~~~p~f~~~~~lLesLA~vks~vl~~DL~d~d~Li~~lF~~ff~~v~~---~~ 153 (253)
..+ ...-..+...+ ++.+.+..+|+. ..-.|..+++ ++.-+..-+++...+..+++.+.. +.
T Consensus 135 ~~~~~~~~~~~~~l~~~l---~~~~~~~~~p~n--~ml~lR~l~N------lF~~~~g~~~l~~~~~~il~~~~~~~~~~ 203 (304)
T 3ebb_A 135 VNENFCNEKEGAQFSSHL---INLLNPKGKPAN--QLLALRTFCN------CFVGQAGQKLMMSQRESLMSHAIELKSGS 203 (304)
T ss_dssp HHHHHHSTTTHHHHHHHH---HHTTCTTSCHHH--HHHHHHHHHH------GGGSHHHHHHHHHTHHHHHHHHHGGGSSC
T ss_pred HHHHhhccccchHHHHHH---HHhcCCCCChHH--HHHHHHHHHH------ccCCchhHHHHHHHHHHHHHHHHHHhcCC
Confidence 431 00112233222 344444444532 4444555543 222222334555555555555542 33
Q ss_pred chhHHH
Q psy10770 154 SGKVKS 159 (253)
Q Consensus 154 ~~~V~~ 159 (253)
.++++.
T Consensus 204 nknl~i 209 (304)
T 3ebb_A 204 NKNIHI 209 (304)
T ss_dssp CHHHHH
T ss_pred ChhHHH
Confidence 445553
No 33
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=29.13 E-value=2.8e+02 Score=23.94 Aligned_cols=117 Identities=11% Similarity=0.137 Sum_probs=61.5
Q ss_pred hhcCC-CcchHHHHHHHHHHHHhhcCCCCCCCChHHHHHH-----HHHHHHHhcCCCCCCCcchhHHHHHHHHHHhhhhh
Q psy10770 52 FLSHE-SKDVQLLIACCIADVLRVYAPEAPYKDPDQVKTI-----FLFLIKQLNGLKDPKDPAFKRYFYLLENLAYVKSF 125 (253)
Q Consensus 52 LL~Hk-D~~Vr~~vAcCLadIlRI~APdaPy~d~~qLkdI-----F~l~v~~l~~L~d~~~p~f~~~~~lLesLA~vks~ 125 (253)
+|++. |.+||..++-||..+.+- + ++..+.+ ...+++.+ .+++...-.+....|.+++...
T Consensus 72 ~L~~~~~~~v~~~a~~~L~~l~~~-------~-~~~~~~~~~~~~i~~L~~lL---~~~~~~vr~~a~~~L~~l~~~~-- 138 (450)
T 2jdq_A 72 FLKRKENCTLQFESAWVLTNIASG-------N-SLQTRIVIQAGAVPIFIELL---SSEFEDVQEQAVWALGNIAGDS-- 138 (450)
T ss_dssp HHTCTTCHHHHHHHHHHHHHHHSS-------C-HHHHHHHHHTTHHHHHHHHT---TCSCHHHHHHHHHHHHHHHTTC--
T ss_pred HHCCCCCHHHHHHHHHHHHHHhcC-------C-HHHHHHHHhCCCHHHHHHHH---cCCCHHHHHHHHHHHHHHccCC--
Confidence 55666 899999999999998862 1 2333333 33344433 3433223344555666665421
Q ss_pred heeccCCCchHHHH--HHHHHHHHhhccCcchhHHHHHHHHHHHHhccc-cC----CCHHHHHHHHHcc
Q psy10770 126 NMCFELEDSQEIFC--ALFSLMFKIVNDEHSGKVKSFMLDVLCPLITES-DI----LSHELLDIILMNI 187 (253)
Q Consensus 126 vl~~DL~d~d~Li~--~lF~~ff~~v~~~~~~~V~~~m~~Il~~vIeE~-e~----vp~~vld~IL~~l 187 (253)
++..+.+. ..+..+....+.+.+..++......+..+.... .. +-.+++..++.-+
T Consensus 139 ------~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l 201 (450)
T 2jdq_A 139 ------TMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLL 201 (450)
T ss_dssp ------HHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGTGGGHHHHHHHT
T ss_pred ------HHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHH
Confidence 10111111 234444555554455677777777777766543 11 1245666666433
No 34
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=28.56 E-value=31 Score=32.81 Aligned_cols=115 Identities=20% Similarity=0.253 Sum_probs=58.7
Q ss_pred hhcCCCcchHHHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHHHhcCCCCCCCcchhHHHHHHHHHHhhhhhheeccC
Q psy10770 52 FLSHESKDVQLLIACCIADVLRVYAPEAPYKDPDQVKTIFLFLIKQLNGLKDPKDPAFKRYFYLLENLAYVKSFNMCFEL 131 (253)
Q Consensus 52 LL~HkD~~Vr~~vAcCLadIlRI~APdaPy~d~~qLkdIF~l~v~~l~~L~d~~~p~f~~~~~lLesLA~vks~vl~~DL 131 (253)
+|+|+|..|+.-++.|+..+..-. +-+ ++.++.+..-+...+-.|.+ +++ .-++..|++++.+-...
T Consensus 247 ~l~~~~~~V~~ea~~~i~~l~~~~----~~~-~~~~~~~~~~~~~~L~~L~~-~d~--~vr~~aL~~l~~i~~~~----- 313 (591)
T 2vgl_B 247 RLSHANSAVVLSAVKVLMKFLELL----PKD-SDYYNMLLKKLAPPLVTLLS-GEP--EVQYVALRNINLIVQKR----- 313 (591)
T ss_dssp CSCSSTTHHHHHHHHHHHHSCCSC----CBT-TBSHHHHHHHTHHHHHHHTT-SCH--HHHHHHHHHHHHHHHHC-----
T ss_pred HHcCCChHHHHHHHHHHHHHhhcc----CCC-HHHHHHHHHHHHHHHHHHhc-CCc--cHHHHHHHHHHHHHHhC-----
Confidence 689999999999999998875421 111 23455555433333223333 233 45666778877654321
Q ss_pred CCchHHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHhccccCCCHHHHHHHHHc
Q psy10770 132 EDSQEIFCALFSLMFKIVNDEHSGKVKSFMLDVLCPLITESDILSHELLDIILMN 186 (253)
Q Consensus 132 ~d~d~Li~~lF~~ff~~v~~~~~~~V~~~m~~Il~~vIeE~e~vp~~vld~IL~~ 186 (253)
++ .+....+.|| ...+.+..|+..-.+++..+.++.. + .+++..++..
T Consensus 314 p~---~~~~~~~~~~--~~~~d~~~Ir~~al~~L~~l~~~~n-v-~~iv~~L~~~ 361 (591)
T 2vgl_B 314 PE---ILKQEIKVFF--VKYNDPIYVKLEKLDIMIRLASQAN-I-AQVLAELKEY 361 (591)
T ss_dssp CS---TTTTCTTTTS--CCTTSCHHHHHHHHHHHHHTCCSST-H-HHHHHHHHHH
T ss_pred hH---HHHHHHHhhe--eccCChHHHHHHHHHHHHHHCChhh-H-HHHHHHHHHH
Confidence 11 1111112222 1123335666666666666555532 2 3445555533
No 35
>2zhy_A ATP:COB(I)alamin adenosyltransferase, putative; helix bundle; 1.80A {Burkholderia thailandensis} PDB: 2zhz_A*
Probab=27.13 E-value=34 Score=28.65 Aligned_cols=68 Identities=15% Similarity=0.136 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHhhccCcchhHHHHHHHHHHHHhccccC-CCHHHHHHHHHcccCCcccCChhHHHHHHHHHHHchh
Q psy10770 137 IFCALFSLMFKIVNDEHSGKVKSFMLDVLCPLITESDI-LSHELLDIILMNIVDPQKTQRKNAYLLAKELIVKTND 211 (253)
Q Consensus 137 Li~~lF~~ff~~v~~~~~~~V~~~m~~Il~~vIeE~e~-vp~~vld~IL~~l~~~~k~~~p~A~~LA~~vi~~c~~ 211 (253)
+-.+||..--++..++.+ .+.....+-|...|++.+. +|+ +.+|+-|..+...++-.+|+.||+++.-
T Consensus 65 IQ~~Lf~lga~la~~~~~-~i~~~~v~~LE~~id~~~~~l~p------l~~FILPgg~~~aA~Lh~aRtv~RRAER 133 (183)
T 2zhy_A 65 IQHDLFDLGGELCIPGHA-AITDAHLARLDGWLAHYNGQLPP------LEEFILPGGARGAALAHVCRTVCRRAER 133 (183)
T ss_dssp HHHHHHHHHHHHHSTTCC-CCCHHHHHHHHHHHHHHHHTSCC------CCSCCBSCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCC-CCCHHHHHHHHHHHHHHHhhCCC------CcceeeCCCCHHHHHHHHHHHHHHHHHH
Confidence 334455555555554432 3444445555555555442 333 4567666666667777999999998763
No 36
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=27.04 E-value=4.8e+02 Score=25.96 Aligned_cols=155 Identities=12% Similarity=0.178 Sum_probs=88.4
Q ss_pred CCcchHHHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHHHhcCCCCCCCcchhHHHHHHHHHHhhhhhheeccCCCch
Q psy10770 56 ESKDVQLLIACCIADVLRVYAPEAPYKDPDQVKTIFLFLIKQLNGLKDPKDPAFKRYFYLLENLAYVKSFNMCFELEDSQ 135 (253)
Q Consensus 56 kD~~Vr~~vAcCLadIlRI~APdaPy~d~~qLkdIF~l~v~~l~~L~d~~~p~f~~~~~lLesLA~vks~vl~~DL~d~d 135 (253)
.|+..+.++--||+-+.|-..|+ ++. .-...++..|...+.. + ....++..+.++..+.+.. -.++
T Consensus 611 ~~~~~~~~~~e~l~~l~~~~~~~-~~~--~~~~~~~p~~~~iL~~--~-~~~~~~~~~~i~~~l~~~~-----~~~~--- 676 (960)
T 1wa5_C 611 SNPRFTHYTFESIGAILNYTQRQ-NLP--LLVDSMMPTFLTVFSE--D-IQEFIPYVFQIIAFVVEQS-----ATIP--- 676 (960)
T ss_dssp CCHHHHHHHHHHHHHHHHTSCGG-GHH--HHHHHHHHHHHHHHHT--T-CTTTHHHHHHHHHHHHHHC-----SSCC---
T ss_pred CCcHHHHHHHHHHHHHHhcCCcc-hHH--HHHHHHHHHHHHHHHh--h-hHhhHHHHHHHHHHHHHhc-----cCCC---
Confidence 56778888999999999974443 222 2345566666666642 1 2235555666666666543 1222
Q ss_pred HHHHHHHHHHH--HhhccCcchhHHHHHHHHHHHHhccc-cCCC--HHHHHHHHHcccCCcccCChhHHHHHHHHHHHch
Q psy10770 136 EIFCALFSLMF--KIVNDEHSGKVKSFMLDVLCPLITES-DILS--HELLDIILMNIVDPQKTQRKNAYLLAKELIVKTN 210 (253)
Q Consensus 136 ~Li~~lF~~ff--~~v~~~~~~~V~~~m~~Il~~vIeE~-e~vp--~~vld~IL~~l~~~~k~~~p~A~~LA~~vi~~c~ 210 (253)
+.+.++|..++ ...... . ....+...+...+... +.+- +.++.. +..++... ...+.|+.+..+++..|.
T Consensus 677 ~~~~~~~~~l~~~~~~~~~--~-~~~~~~~~L~~~~~~~~~~~~~~~~~l~~-~~~~~~~~-~~~~~a~~ll~~i~~~~~ 751 (960)
T 1wa5_C 677 ESIKPLAQPLLAPNVWELK--G-NIPAVTRLLKSFIKTDSSIFPDLVPVLGI-FQRLIASK-AYEVHGFDLLEHIMLLID 751 (960)
T ss_dssp TTTGGGHHHHTSGGGGCCT--T-THHHHHHHHHHHHHHHGGGCSCSHHHHHH-HHHHHTCT-TTHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHcCHHHhcCC--C-CchhHHHHHHHHHHhChHHHHHHHHHHHH-HHHHhCCC-cccchHHHHHHHHHHHCC
Confidence 23344555554 332211 1 2334555555544332 2222 333433 22333222 223889999999999999
Q ss_pred hh-hhHHHHHHhhhhcccCC
Q psy10770 211 DT-LEPYIQNLTRLANAVFP 229 (253)
Q Consensus 211 ~k-L~~~v~~~f~~~~~~~~ 229 (253)
.. +.||+.+++.-++..+.
T Consensus 752 ~~~~~~yl~~i~~~l~~~l~ 771 (960)
T 1wa5_C 752 MNRLRPYIKQIAVLLLQRLQ 771 (960)
T ss_dssp HHHHGGGHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 88 99999999988766544
No 37
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=25.75 E-value=4.3e+02 Score=25.05 Aligned_cols=164 Identities=13% Similarity=0.150 Sum_probs=82.4
Q ss_pred hcCCCcchHHHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHHHhcCCCCCCCcchhHHHHHHHHHHhhhhhheeccCC
Q psy10770 53 LSHESKDVQLLIACCIADVLRVYAPEAPYKDPDQVKTIFLFLIKQLNGLKDPKDPAFKRYFYLLENLAYVKSFNMCFELE 132 (253)
Q Consensus 53 L~HkD~~Vr~~vAcCLadIlRI~APdaPy~d~~qLkdIF~l~v~~l~~L~d~~~p~f~~~~~lLesLA~vks~vl~~DL~ 132 (253)
|++. ..||..++.++..+.+-+.+..|..-...+..|+..+++.+.. .+. ...-+...++.++.+-...- +
T Consensus 463 l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~---~d~-~~~vr~~a~~al~~l~~~~~----~ 533 (861)
T 2bpt_A 463 LQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANR---IDN-EFNARASAFSALTTMVEYAT----D 533 (861)
T ss_dssp HTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTC---SCC-GGGHHHHHHHHHHHHHHHCC----G
T ss_pred hccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhC---cCc-chHHHHHHHHHHHHHHHHcc----h
Confidence 4443 7899999999999999876311111013567777777776653 221 11223344444443322111 1
Q ss_pred Cch----HHHHHHHHHHHHhh-------cc---CcchhHHHHHHHHHHHHhcccc----CCCHHHHHHHHHcccCCcc-c
Q psy10770 133 DSQ----EIFCALFSLMFKIV-------ND---EHSGKVKSFMLDVLCPLITESD----ILSHELLDIILMNIVDPQK-T 193 (253)
Q Consensus 133 d~d----~Li~~lF~~ff~~v-------~~---~~~~~V~~~m~~Il~~vIeE~e----~vp~~vld~IL~~l~~~~k-~ 193 (253)
+.. .++..+++.+-+.+ +. +....+.......+..++...+ ..-.+++..++..+-..+. .
T Consensus 534 ~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~ 613 (861)
T 2bpt_A 534 TVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAF 613 (861)
T ss_dssp GGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHSTTGGG
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHccCCCCc
Confidence 122 33333444333221 10 1123455566666666665433 2234566666644443332 3
Q ss_pred CChhHHHHHHHHHHHchhhhhHHHHHHhhhhc
Q psy10770 194 QRKNAYLLAKELIVKTNDTLEPYIQNLTRLAN 225 (253)
Q Consensus 194 ~~p~A~~LA~~vi~~c~~kL~~~v~~~f~~~~ 225 (253)
..-.+...-..++....+.+.+|+.+++.-++
T Consensus 614 v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~ 645 (861)
T 2bpt_A 614 IEDDVFYAISALAASLGKGFEKYLETFSPYLL 645 (861)
T ss_dssp THHHHHHHHHHHHHHHGGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 33455555566777777777777666554443
No 38
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=24.05 E-value=3.1e+02 Score=23.85 Aligned_cols=121 Identities=9% Similarity=0.163 Sum_probs=73.4
Q ss_pred chhhhhhHHHHHHHhhhhhhcCCCcchHHHHHHHHHHHHhhcCCCCCCCChHHH------HHHHHHHHHHhcCCCCCCCc
Q psy10770 34 EGMYQQYIPLALHIAEDHFLSHESKDVQLLIACCIADVLRVYAPEAPYKDPDQV------KTIFLFLIKQLNGLKDPKDP 107 (253)
Q Consensus 34 ~~~~~sl~~~~~~Lv~~~LL~HkD~~Vr~~vAcCLadIlRI~APdaPy~d~~qL------kdIF~l~v~~l~~L~d~~~p 107 (253)
..+=.....++..|+-..+=.|....=++++++||+=|..=--+|+-|+.++.+ -.||..|-+.+. | .
T Consensus 32 ~~dFrq~rdi~eall~~~l~~~~~~~k~iri~QfLsRI~eG~~LD~~Fd~~~~lTPLESAl~v~~~I~~e~~-l---~-- 105 (235)
T 3bu8_A 32 YGDFRQIRDIMQALLVRPLGKEHTVSRLLRVMQCLSRIEEGENLDCSFDMEAELTPLESAINVLEMIKTEFT-L---T-- 105 (235)
T ss_dssp HHHHHHHHHHHHHHTTSCCCCCHHHHHHHHHHHHHHHHHTTTCTTEECSSSTTCCHHHHHHHHHHHHHHHTT-C---C--
T ss_pred HHHHHHHHHHHHHHHhCcccccccchhHHHHHHHHHHHHcCCCCCcccCCCCCCChHHHHHHHHHHHHHhhc-C---c--
Confidence 455566778888888777777766667889999987777767788888752222 356666555441 1 1
Q ss_pred chhHHHHHHHHHHhhhhhheeccCCCchHHHHHHHHHHHHhhccCcchhHHHHHHHHH
Q psy10770 108 AFKRYFYLLENLAYVKSFNMCFELEDSQEIFCALFSLMFKIVNDEHSGKVKSFMLDVL 165 (253)
Q Consensus 108 ~f~~~~~lLesLA~vks~vl~~DL~d~d~Li~~lF~~ff~~v~~~~~~~V~~~m~~Il 165 (253)
..-+.-...+-.+...++|..-..- +--.++|+.+|+- ++.+++++..+..|.
T Consensus 106 --~~l~e~i~~llk~qAV~VCiek~~f-~kA~eiLkr~~~~--~~s~~kLr~kL~~II 158 (235)
T 3bu8_A 106 --EAVVESSRKLVKEAAVIICIKNKEF-EKASKILKKHMSK--DPTTQKLRNDLLNII 158 (235)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHSTT--CGGGHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHHHhcch-HHHHHHHHHHhcC--CCCchHHHHHHHHHH
Confidence 2333444445555556677765433 3346666666652 344555665555543
No 39
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=23.95 E-value=1.3e+02 Score=27.48 Aligned_cols=153 Identities=12% Similarity=0.198 Sum_probs=0.0
Q ss_pred hhhcCCCcchHHHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHHHhcCCCCCCCcchhHHHHHHHHHHhhhhhheecc
Q psy10770 51 HFLSHESKDVQLLIACCIADVLRVYAPEAPYKDPDQVKTIFLFLIKQLNGLKDPKDPAFKRYFYLLENLAYVKSFNMCFE 130 (253)
Q Consensus 51 ~LL~HkD~~Vr~~vAcCLadIlRI~APdaPy~d~~qLkdIF~l~v~~l~~L~d~~~p~f~~~~~lLesLA~vks~vl~~D 130 (253)
.+|++.|.+||..++.||+.+.+-..|..++. ....+...+++.+. +.+...-......|.+++....
T Consensus 222 ~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~---~~~~~l~~L~~lL~---~~d~~v~~~a~~~L~~L~~~~~------ 289 (530)
T 1wa5_B 222 GLFNSNKPSLIRTATWTLSNLCRGKKPQPDWS---VVSQALPTLAKLIY---SMDTETLVDACWAISYLSDGPQ------ 289 (530)
T ss_dssp HGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHH---HHGGGHHHHHHHTT---CCCHHHHHHHHHHHHHHHSSCH------
T ss_pred HHhccCCHHHHHHHHHHHHHHhCCCCCCCcHH---HHHhHHHHHHHHHc---CCCHHHHHHHHHHHHHHhCCCH------
Q ss_pred CCCchHHHH-HHHHHHHHhhccCcchhHHHHHHHHHHHHhccccC-----CCHHHHHHHHHcccCCcccCChhHHHHHHH
Q psy10770 131 LEDSQEIFC-ALFSLMFKIVNDEHSGKVKSFMLDVLCPLITESDI-----LSHELLDIILMNIVDPQKTQRKNAYLLAKE 204 (253)
Q Consensus 131 L~d~d~Li~-~lF~~ff~~v~~~~~~~V~~~m~~Il~~vIeE~e~-----vp~~vld~IL~~l~~~~k~~~p~A~~LA~~ 204 (253)
+..+.++. .++..+....+ +....|......++..+....+. +...++..++.-+-.++......|...-..
T Consensus 290 -~~~~~~~~~~~v~~Lv~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~ 367 (530)
T 1wa5_B 290 -EAIQAVIDVRIPKRLVELLS-HESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISN 367 (530)
T ss_dssp -HHHHHHHHTTCHHHHHHGGG-CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred -HHHHHHHhcCcHHHHHHHHC-CCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHH
Q ss_pred HHHHchhhhhHHH
Q psy10770 205 LIVKTNDTLEPYI 217 (253)
Q Consensus 205 vi~~c~~kL~~~v 217 (253)
+...+.+..+..+
T Consensus 368 l~~~~~~~~~~~~ 380 (530)
T 1wa5_B 368 ITAGNTEQIQAVI 380 (530)
T ss_dssp HTTSCHHHHHHHH
T ss_pred HHcCCHHHHHHHH
No 40
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=23.95 E-value=3.5e+02 Score=23.29 Aligned_cols=162 Identities=12% Similarity=0.120 Sum_probs=79.1
Q ss_pred hcCCCcchHHHHHHHHHHHHhhc-------C-------C--CCCCCC-hHHHHHHHHHHHHHhcCCCC-CCCcchhHHH-
Q psy10770 53 LSHESKDVQLLIACCIADVLRVY-------A-------P--EAPYKD-PDQVKTIFLFLIKQLNGLKD-PKDPAFKRYF- 113 (253)
Q Consensus 53 L~HkD~~Vr~~vAcCLadIlRI~-------A-------P--daPy~d-~~qLkdIF~l~v~~l~~L~d-~~~p~f~~~~- 113 (253)
+++.+.+||..+.-.+..+.+.- . | ...+.- ...+..++..+++.+....+ .++..+..+.
T Consensus 268 ~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~ 347 (462)
T 1ibr_B 268 MKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKA 347 (462)
T ss_dssp HHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHH
T ss_pred HcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHH
Confidence 45788889988877777766542 0 0 111110 01245666666666654321 1222333333
Q ss_pred --HHHHHHHhhhhhheeccCCCchHHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHhcccc-----CCCHHHHHHHHHc
Q psy10770 114 --YLLENLAYVKSFNMCFELEDSQEIFCALFSLMFKIVNDEHSGKVKSFMLDVLCPLITESD-----ILSHELLDIILMN 186 (253)
Q Consensus 114 --~lLesLA~vks~vl~~DL~d~d~Li~~lF~~ff~~v~~~~~~~V~~~m~~Il~~vIeE~e-----~vp~~vld~IL~~ 186 (253)
..|..++..- + +.++..++..+....++. .-+++......+..+.+..+ ..-++++..++..
T Consensus 348 a~~~L~~l~~~~--------~--~~~~~~~~~~l~~~l~~~-~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~ 416 (462)
T 1ibr_B 348 AGVCLMLLATCC--------E--DDIVPHVLPFIKEHIKNP-DWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIEL 416 (462)
T ss_dssp HHHHHHHHHHHT--------T--TTHHHHHHHHHHHHTTCS-SHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHG
T ss_pred HHHHHHHHHHhc--------c--HHHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHH
Confidence 3444444321 1 234444454444444433 34666666666777665432 1124677777766
Q ss_pred ccCCcccCChhHHHHHHHHHHHchhhh--hHHHHHHhhhhc
Q psy10770 187 IVDPQKTQRKNAYLLAKELIVKTNDTL--EPYIQNLTRLAN 225 (253)
Q Consensus 187 l~~~~k~~~p~A~~LA~~vi~~c~~kL--~~~v~~~f~~~~ 225 (253)
+-.++......|...-.+++..+.+.+ .+++...++.++
T Consensus 417 l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~l~~ll~~Ll 457 (462)
T 1ibr_B 417 MKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLI 457 (462)
T ss_dssp GGCSCHHHHHHHHHHHHHHHHHGGGGCCSTTTHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHH
Confidence 654443333333333334444444433 355666665553
No 41
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=23.88 E-value=5.2e+02 Score=25.31 Aligned_cols=91 Identities=10% Similarity=0.055 Sum_probs=48.7
Q ss_pred CCcchHHHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHHHhcCC----CCCCCcchhHHHHHHHHHHhhhhhheeccC
Q psy10770 56 ESKDVQLLIACCIADVLRVYAPEAPYKDPDQVKTIFLFLIKQLNGL----KDPKDPAFKRYFYLLENLAYVKSFNMCFEL 131 (253)
Q Consensus 56 kD~~Vr~~vAcCLadIlRI~APdaPy~d~~qLkdIF~l~v~~l~~L----~d~~~p~f~~~~~lLesLA~vks~vl~~DL 131 (253)
.+.++|..+.-|+.+|+..+ +.|... ..+..+|..++..++.+ .+.+...+.+...++..+++...-.+....
T Consensus 251 ~~~~~~~~a~~~l~~i~~~~--~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~l~~~~ 327 (963)
T 2x19_B 251 QDSELFDSSVEAIVNAISQP--DAQRYV-NTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGENHSRALLDQV 327 (963)
T ss_dssp TSTTTHHHHHHHHHHHHTCT--TGGGCH-HHHHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHCG
T ss_pred CCchHHHHHHHHHHHHHccc--ccccCH-HHHHHHHHHHHhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhHHHHHcCc
Confidence 46889999999999999854 333222 45666666555442211 222223455566666666654432222111
Q ss_pred CCchHHHHHHHHHHHHhhc
Q psy10770 132 EDSQEIFCALFSLMFKIVN 150 (253)
Q Consensus 132 ~d~d~Li~~lF~~ff~~v~ 150 (253)
+ ..+-+..+++.++.+.+
T Consensus 328 ~-~~~~~~~~l~~ll~~~~ 345 (963)
T 2x19_B 328 E-HWQSFLALVNMIMFCTG 345 (963)
T ss_dssp G-GHHHHHHHHHHHHHHHT
T ss_pred c-chHHHHHHHHHHHHHHc
Confidence 1 12333456666665543
No 42
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=23.63 E-value=54 Score=30.38 Aligned_cols=66 Identities=14% Similarity=0.284 Sum_probs=43.8
Q ss_pred hhhcCCCcchHHHHHHHHHHHHhhcCCCCCCCChHHHHHHHH--HHHHHhcCCCC-CCCcchhHHHHHHHHH
Q psy10770 51 HFLSHESKDVQLLIACCIADVLRVYAPEAPYKDPDQVKTIFL--FLIKQLNGLKD-PKDPAFKRYFYLLENL 119 (253)
Q Consensus 51 ~LL~HkD~~Vr~~vAcCLadIlRI~APdaPy~d~~qLkdIF~--l~v~~l~~L~d-~~~p~f~~~~~lLesL 119 (253)
.+|+.+|..++..+..+|..|++. ++..+-+ +.++..|+ =.++.+..|.+ .+..-|++.+.|||+.
T Consensus 408 ~LL~~~d~~i~~~~L~aL~nil~~-~~~~~~~--~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~y 476 (510)
T 3ul1_B 408 NLLSAKDTKIIQVILDAISNIFQA-AEKLGET--EKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKY 476 (510)
T ss_dssp HGGGCSCHHHHHHHHHHHHHHHHH-HHTTTCH--HHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHH-hHhccch--HHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 378899999999999999999987 4443332 34444433 12344555544 3445788888888876
No 43
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=23.38 E-value=3.3e+02 Score=22.78 Aligned_cols=128 Identities=13% Similarity=0.142 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCcchhHHHHHHHHHHhhhhhheeccCCCchHHHHHHHHHHHHhhccCcc-hhHHHHHHH
Q psy10770 85 DQVKTIFLFLIKQLNGLKDPKDPAFKRYFYLLENLAYVKSFNMCFELEDSQEIFCALFSLMFKIVNDEHS-GKVKSFMLD 163 (253)
Q Consensus 85 ~qLkdIF~l~v~~l~~L~d~~~p~f~~~~~lLesLA~vks~vl~~DL~d~d~Li~~lF~~ff~~v~~~~~-~~V~~~m~~ 163 (253)
.+++.-|+-+.+.+.+ ..+-..|++|++ | ++-+.|+.-+.+-+-+.|+.+.. -.+-..|..
T Consensus 7 ~Elq~yf~~It~a~~~---------~~r~~aL~sL~~--------D-~gL~~LlPyf~~fI~~~v~~nl~~l~~L~~lm~ 68 (196)
T 4atg_A 7 KELQLYFDKILSMIKS---------DMKDIAIECLEK--------E-SGLQQLVPYFIQHISELILKSFKEAEVLKTCIA 68 (196)
T ss_dssp HHHHHHHHHHHHHHTS---------TTHHHHHHHHHH--------C-SSCTTTHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh---------HHHHHHHHHHhc--------C-CChhhhHHHHHHHHHHHHHhccCCHHHHHHHHH
Confidence 4788888888888876 345667777763 2 12345655555555555544322 234455666
Q ss_pred HHHHHhcccc-CC---CHHHHHHHHHcccCCcc---cCChhHHHHHHHHHHHch---hhhhHHHHHHhhhhcccCCC
Q psy10770 164 VLCPLITESD-IL---SHELLDIILMNIVDPQK---TQRKNAYLLAKELIVKTN---DTLEPYIQNLTRLANAVFPN 230 (253)
Q Consensus 164 Il~~vIeE~e-~v---p~~vld~IL~~l~~~~k---~~~p~A~~LA~~vi~~c~---~kL~~~v~~~f~~~~~~~~~ 230 (253)
+..++++--. .+ =++++-.+|.+++..+- .-.--|-++-..||++++ ..|+|.|.+.+..++.+-++
T Consensus 69 ~~~ALl~N~~l~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k~l~dp~~ 145 (196)
T 4atg_A 69 LYFSLIKNKHVFIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKGVWMDPNR 145 (196)
T ss_dssp HHHHHHHCTTCCCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHTCTTS
T ss_pred HHHHHHcCCCCChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhCccCchHHHHHHHHHHHHHcCCCC
Confidence 6666666543 11 23444444444443211 112234445556777776 46889999999988766443
No 44
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=22.50 E-value=2.9e+02 Score=21.83 Aligned_cols=210 Identities=9% Similarity=0.115 Sum_probs=0.0
Q ss_pred hhhhccCCChhHHHHhHHHHHHHHhhcCCCchhhhhhHHHHHHHhhhhhhcCCCcchHHHHHHHHHHHHhhcCCCCCCCC
Q psy10770 4 IEHSFSRSKHNYLTFTPQTLAHTLQGMGQDEGMYQQYIPLALHIAEDHFLSHESKDVQLLIACCIADVLRVYAPEAPYKD 83 (253)
Q Consensus 4 ~~~~~~~~~~~eLlkrLk~L~~~L~~~dQ~~~~~~sl~~~~~~Lv~~~LL~HkD~~Vr~~vAcCLadIlRI~APdaPy~d 83 (253)
+-..|..++.+....-++.|.+.++. +.+....-.-......|+ ++|++.+.+||..++.||..+. ..+
T Consensus 17 ~~~~L~s~~~~~~~~a~~~L~~~l~~-~~~~~~~~~~~g~i~~L~--~lL~~~~~~v~~~a~~~L~~l~--------~~~ 85 (252)
T 4db8_A 17 MTQQLNSDDMQEQLSATRKFSQILSD-GNEQIQAVIDAGALPALV--QLLSSPNEQILQEALWALSNIA--------SGG 85 (252)
T ss_dssp HHHHHHSSCSSHHHHHHHHHHHHHHH-HHHHHHHHHHTTHHHHHH--HGGGCSCHHHHHHHHHHHHHHT--------TSC
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHcC-CCchHHHHHHcCcHHHHH--HHHcCCCHHHHHHHHHHHHHHh--------cCC
Q ss_pred hHHHHHHHH--HHHHHhcCCCCCCCcchhHHHHHHHHHHhhhhhheeccCCCc-hHHHHH-HHHHHHHhhccCcchhHHH
Q psy10770 84 PDQVKTIFL--FLIKQLNGLKDPKDPAFKRYFYLLENLAYVKSFNMCFELEDS-QEIFCA-LFSLMFKIVNDEHSGKVKS 159 (253)
Q Consensus 84 ~~qLkdIF~--l~v~~l~~L~d~~~p~f~~~~~lLesLA~vks~vl~~DL~d~-d~Li~~-lF~~ff~~v~~~~~~~V~~ 159 (253)
++.-..+.+ .+-.-+.-|.+++...-......|.++ +.+-+.. +.++.. ....+.+..+.+ ...+..
T Consensus 86 ~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l--------~~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~v~~ 156 (252)
T 4db8_A 86 NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI--------ASGGNEQIQAVIDAGALPALVQLLSSP-NEQILQ 156 (252)
T ss_dssp HHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHH--------TTSCHHHHHHHHHTTHHHHHHHGGGCS-CHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHh--------hcCCchHHHHHHHCCCHHHHHHHHhCC-CHHHHH
Q ss_pred HHHHHHHHHhccccC-----CCHHHHHHHHHcccCCcccCChhHHHHHHHHHHHchhhhhHHHHHHhhhhcccCCCCCC
Q psy10770 160 FMLDVLCPLITESDI-----LSHELLDIILMNIVDPQKTQRKNAYLLAKELIVKTNDTLEPYIQNLTRLANAVFPNLGD 233 (253)
Q Consensus 160 ~m~~Il~~vIeE~e~-----vp~~vld~IL~~l~~~~k~~~p~A~~LA~~vi~~c~~kL~~~v~~~f~~~~~~~~~~~~ 233 (253)
.....+..+....+. +...++..++.-+..++....-.|-..-.+++....+..+..+..=.-..++.+-..++
T Consensus 157 ~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~ 235 (252)
T 4db8_A 157 EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHEN 235 (252)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSS
T ss_pred HHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCC
No 45
>3pk1_B Apoptosis regulator BAX; BCL-2 family fold, regulation of apoptosis, mitochondri apoptosis-apoptosis regulator complex; 2.49A {Homo sapiens} PDB: 3pl7_C 2xa0_C
Probab=22.44 E-value=68 Score=19.86 Aligned_cols=23 Identities=9% Similarity=0.056 Sum_probs=17.2
Q ss_pred hccCCChhHHHHhHHHHHHHHhh
Q psy10770 7 SFSRSKHNYLTFTPQTLAHTLQG 29 (253)
Q Consensus 7 ~~~~~~~~eLlkrLk~L~~~L~~ 29 (253)
.++-|+++++..-|+++.++|-+
T Consensus 3 ~~~Dp~~K~l~~cL~~IgDEld~ 25 (34)
T 3pk1_B 3 VPQDASTKKLSECLKRIGDELDS 25 (34)
T ss_dssp ----CTHHHHHHHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHHHHHHHHHcc
Confidence 46789999999999999999865
No 46
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=21.83 E-value=62 Score=18.61 Aligned_cols=13 Identities=23% Similarity=0.117 Sum_probs=6.0
Q ss_pred HHHHhHHHHHHHH
Q psy10770 15 YLTFTPQTLAHTL 27 (253)
Q Consensus 15 eLlkrLk~L~~~L 27 (253)
+|-.||++|.+.|
T Consensus 12 dlqerlrklrkkl 24 (27)
T 3twe_A 12 DLQERLRKLRKKL 24 (27)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 3444444444444
Done!