RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10770
(253 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.0 bits (98), Expect = 2e-04
Identities = 40/259 (15%), Positives = 79/259 (30%), Gaps = 79/259 (30%)
Query: 15 YLTFTPQTLAHTLQGMGQDEGMYQQYIPLALHIAEDHFLSHESKDVQLLIACCIAD---- 70
+L + ++ ++ G + Q + L L E+ +L D+ L A + +
Sbjct: 64 FLGY----VSSLVEP--SKVGQFDQVLNLCLTEFENCYLEG--NDIHALAAKLLQENDTT 115
Query: 71 ------VLRVY--APEAPYKDPDQVKTIFLFLIKQLNGLKDPKDPAFKRYFYLL-----E 117
+++ Y A + D+ LF + + + +
Sbjct: 116 LVKTKELIKNYITARIMAKRPFDKKSNSALF--------RAVGEGNAQ--LVAIFGGQGN 165
Query: 118 NLAYVKSFNMCFELEDSQEIFCALFSLMFKIVNDEHSGKVKSF---MLDVLCPLITESD- 173
Y + EL ++++ + V + L LI +
Sbjct: 166 TDDYFE------EL---RDLY------------QTYHVLVGDLIKFSAETLSELIRTTLD 204
Query: 174 ---ILSHELLDII--LMNIVDPQKTQRKNAYLLAKELIVKTNDTLEPYIQNLTRLAN-AV 227
+ + L+I+ L N P T YLL+ + P I + +LA+ V
Sbjct: 205 AEKVFTQG-LNILEWLEN---PSNT-PDKDYLLSIPISC-------PLIG-VIQLAHYVV 251
Query: 228 FPNLGDIAPLGAMEIFMGA 246
L P GA
Sbjct: 252 TAKLLGFTPGELRSYLKGA 270
Score = 33.1 bits (75), Expect = 0.084
Identities = 26/132 (19%), Positives = 40/132 (30%), Gaps = 52/132 (39%)
Query: 28 QGMGQDEGMYQQYIPLALHI---AEDHFLSHESKDVQLLIACCIADVLRVYAPEAPYKDP 84
QGMG D Y+ A + A++HF I D++ +P
Sbjct: 1629 QGMGMDL--YKTS-KAAQDVWNRADNHFKDTYGFS--------ILDIVI--------NNP 1669
Query: 85 DQVKTIFLFLIKQLNGLKDPKDPAFKRYFYLLENLAYVKSFNMCFE-LEDSQEIFCALF- 142
+ F G K + + EN Y M FE + D + +F
Sbjct: 1670 VNL--TIHF-----GGEKGKR---------IREN--YSA---MIFETIVDGKLKTEKIFK 1708
Query: 143 -------SLMFK 147
S F+
Sbjct: 1709 EINEHSTSYTFR 1720
Score = 31.2 bits (70), Expect = 0.35
Identities = 40/240 (16%), Positives = 67/240 (27%), Gaps = 86/240 (35%)
Query: 1 MFLIEHSFSRSKHNY--LTFTPQTLAHTLQGMGQDEG----M----------YQQYI--- 41
+F I R Y + P L +L+ +EG M Q Y+
Sbjct: 303 LFFIG---VRCYEAYPNTSLPPSILEDSLEN---NEGVPSPMLSISNLTQEQVQDYVNKT 356
Query: 42 ----P------LALHIAEDHF-LSHESKDVQLLIACCIADVLR-VYAPEAPYKDPDQVKT 89
P ++L + +S + L + LR AP DQ +
Sbjct: 357 NSHLPAGKQVEISLVNGAKNLVVSGPPQS---LYGLNLT--LRKAKAP----SGLDQSRI 407
Query: 90 IFLFLIKQLNGLKDPKDPAFKRYF----------YLLENLAYVKSFNMCFELEDSQEIFC 139
F + F F L+ + +D +
Sbjct: 408 PF-----------SERKLKFSNRFLPVASPFHSHLLVPASDLI--------NKDLVKNNV 448
Query: 140 ALFSLMFKI-VNDEHSGKVKSFMLDVLCPLITESDILSHELLDIILMNIVDPQKTQRKNA 198
+ + +I V D G D L S +S ++D I+ V + T + A
Sbjct: 449 SFNAKDIQIPVYDTFDGS------D----LRVLSGSISERIVDCIIRLPVKWETTTQFKA 498
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.5 bits (91), Expect = 8e-04
Identities = 34/249 (13%), Positives = 68/249 (27%), Gaps = 70/249 (28%)
Query: 21 QTLAHTLQGMGQDEGMYQQYIPLALHIAED---HFLSHESKDVQLLIACCIADVLRVYAP 77
Q L + + + I L +H + L + + LL+ + +V
Sbjct: 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV---LLNV------ 253
Query: 78 EAPYKDPDQVKTIFLFLIKQL-----NGLKDPKDPAFKRYFYLLENLAYVKSFNMCFELE 132
++ F K L + D A + L + +M +
Sbjct: 254 ----QNAKAWNA-FNLSCKILLTTRFKQVTDFLSAATTTHISLDHH-------SMTLTPD 301
Query: 133 DSQEIFCALFSLMFKIVNDEHSGKVKSFMLDVLCPLITESDILSHELLDI--ILMNIV-- 188
+ + + K ++ D L E+L ++I+
Sbjct: 302 EVKSLLL-------KYLD------------------CRPQD-LPREVLTTNPRRLSIIAE 335
Query: 189 ----DPQKTQRKNAYLLAK--ELIVKTNDTLEPYI--QNLTRLANAVFPNLGDIAPLGAM 240
K +I + + LEP + RL +VFP I P +
Sbjct: 336 SIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL--SVFPPSAHI-PTILL 392
Query: 241 EIFMGAMKP 249
+ +
Sbjct: 393 SLIWFDVIK 401
Score = 34.1 bits (77), Expect = 0.042
Identities = 23/132 (17%), Positives = 45/132 (34%), Gaps = 45/132 (34%)
Query: 94 LIKQLNGLK-----DPKDPAFKRYFYLLENLAY-VKSFNMCFELEDSQEIFCALF-SLMF 146
++ N K D P +YFY ++ + +K+ E + +F +F F
Sbjct: 449 IVDHYNIPKTFDSDDLIPPYLDQYFY--SHIGHHLKNI----EHPERMTLFRMVFLDFRF 502
Query: 147 ---KIVNDEHSGKVKSFMLDVLCPL------ITESD--------------------ILSH 177
KI +D + +L+ L L I ++D ++
Sbjct: 503 LEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICS 562
Query: 178 ELLDII---LMN 186
+ D++ LM
Sbjct: 563 KYTDLLRIALMA 574
Score = 28.7 bits (63), Expect = 2.5
Identities = 21/123 (17%), Positives = 46/123 (37%), Gaps = 35/123 (28%)
Query: 120 AYVKSFNMCFELEDSQEIFCALFS------------------LMFKIVNDEHSGKVKSFM 161
A+V +F+ C +++D + ++ S +F + + V+ F+
Sbjct: 28 AFVDNFD-CKDVQDMPK---SILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFV 83
Query: 162 LDVLCPLITESDILSHE-LLDIILMNIVDPQKTQRKNAYLLAKELIVKTNDTLEPYIQNL 220
+VL +++ L+ I P R Y+ ++ + N Y N+
Sbjct: 84 EEVLRI--------NYKFLMSPIKTEQRQPSMMTRM--YIEQRDRLYNDNQVFAKY--NV 131
Query: 221 TRL 223
+RL
Sbjct: 132 SRL 134
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.0 bits (74), Expect = 0.043
Identities = 8/26 (30%), Positives = 14/26 (53%), Gaps = 6/26 (23%)
Query: 56 ESKDVQLLIACCIADVLRVYAPE-AP 80
E + ++ L A L++YA + AP
Sbjct: 18 EKQALKKLQAS-----LKLYADDSAP 38
Score = 29.1 bits (64), Expect = 0.75
Identities = 10/40 (25%), Positives = 15/40 (37%), Gaps = 16/40 (40%)
Query: 203 KELIVKTNDTLEPYIQNLTRLANAVFPNLGDIAPLGAMEI 242
K+ + K +L+ Y A D AP A+ I
Sbjct: 19 KQALKKLQASLKLY-------A----D---DSAP--ALAI 42
>4ell_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor,
cell cycle; 1.98A {Homo sapiens}
Length = 411
Score = 28.2 bits (62), Expect = 2.8
Identities = 13/75 (17%), Positives = 27/75 (36%), Gaps = 7/75 (9%)
Query: 25 HTLQGMGQDEGMYQQYIPLALHIAEDHFLSHESKDVQLLIACCIADVLRVYAPEAPYKDP 84
++ M + E + + ++ F H S L+AC + V+ Y+
Sbjct: 79 RVMESMLKSEEERLSIQNFSKLLNDNIF--HMS-----LLACALEVVMATYSRSTSQNLD 131
Query: 85 DQVKTIFLFLIKQLN 99
F +++ LN
Sbjct: 132 SGTDLSFPWILNVLN 146
>2glf_A Probable M18-family aminopeptidase 1; putative, NYSGXRC, structural
genomics, PS protein structure initiative; 2.80A
{Thermotoga maritima}
Length = 450
Score = 27.3 bits (61), Expect = 5.8
Identities = 12/49 (24%), Positives = 22/49 (44%), Gaps = 8/49 (16%)
Query: 149 VNDEHSGKVKSFMLDVLCPL--ITESDILSHELLDIILMNIVDPQKTQR 195
++ E VK+ +L +L + ITE D +S E+ +V +
Sbjct: 193 LSGEEKEAVKTNVLKILNEMYGITEEDFVSGEI------EVVPAFSPRE 235
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic
transport, nuclear trafficking, importin- beta, complex;
1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB:
2bku_B 3ea5_B* 3nd2_A
Length = 861
Score = 27.5 bits (60), Expect = 6.2
Identities = 17/138 (12%), Positives = 40/138 (28%), Gaps = 21/138 (15%)
Query: 53 LSHESKDVQLLIACCIADVLRVYAPEAPYKDPDQVKTIFLFLIKQLNGLKDPKDPAFKRY 112
L + A IA + + P + + + + ++ K +
Sbjct: 104 LVSIEPRIANAAAQLIAAIADIELPHGAWPELMK----IMVDNTGAEQPENVKRASLLAL 159
Query: 113 FYLLENLAY-------------VKSFNMCFELEDSQEI----FCALFSLMFKIVNDEHSG 155
Y+ E+ + E S+ + AL + I N+
Sbjct: 160 GYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMERE 219
Query: 156 KVKSFMLDVLCPLITESD 173
+++++ V+C D
Sbjct: 220 GERNYLMQVVCEATQAED 237
>4evx_A Putative phage endolysin; structural genomics, PSI-biology, program
for the characteri secreted effector proteins, pcsep;
HET: MLY MSE; 1.70A {Salmonella enterica subsp}
Length = 106
Score = 25.7 bits (56), Expect = 8.7
Identities = 12/68 (17%), Positives = 20/68 (29%)
Query: 81 YKDPDQVKTIFLFLIKQLNGLKDPKDPAFKRYFYLLENLAYVKSFNMCFELEDSQEIFCA 140
Y+D I + + P F L + + C + +
Sbjct: 26 YRDRQGNWVIGYGHMLTPDETLTFITPDQAEAFLLDDLNSCDILLQNCLPELNDRFQRET 85
Query: 141 LFSLMFKI 148
L +LMF I
Sbjct: 86 LIALMFSI 93
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.140 0.411
Gapped
Lambda K H
0.267 0.0577 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,736,500
Number of extensions: 217725
Number of successful extensions: 468
Number of sequences better than 10.0: 1
Number of HSP's gapped: 463
Number of HSP's successfully gapped: 23
Length of query: 253
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 162
Effective length of database: 4,160,982
Effective search space: 674079084
Effective search space used: 674079084
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (25.7 bits)