RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10770
         (253 letters)



>d1y7ea1 b.49.3.1 (A:101-233) Probable aminopeptidase ApeA {Borrelia
           burgdorferi [TaxId: 139]}
          Length = 133

 Score = 25.5 bits (56), Expect = 4.3
 Identities = 9/31 (29%), Positives = 14/31 (45%), Gaps = 2/31 (6%)

Query: 151 DEHSGKVKSFMLDVLCPL--ITESDILSHEL 179
            +   KVK   L ++     I E D +S E+
Sbjct: 101 TKEKNKVKLATLQLIKEKYKIEEEDFVSSEI 131


>d2r7ga1 a.74.1.3 (A:380-578) Retinoblastoma tumor suppressor
           domains {Human (Homo sapiens) [TaxId: 9606]}
          Length = 199

 Score = 25.5 bits (56), Expect = 4.8
 Identities = 8/37 (21%), Positives = 15/37 (40%)

Query: 63  LIACCIADVLRVYAPEAPYKDPDQVKTIFLFLIKQLN 99
           L+AC +  V+  Y+              F +++  LN
Sbjct: 107 LLACALEVVMATYSRSTSQNLDSGTDLSFPWILNVLN 143


>d1lzia_ c.68.1.9 (A:) Glycosyltransferase A catalytic domain {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 283

 Score = 25.5 bits (56), Expect = 7.4
 Identities = 14/86 (16%), Positives = 27/86 (31%), Gaps = 12/86 (13%)

Query: 35  GMYQQYIPLALHIAEDHFLSHESKDVQLLIACCIADVLRVYAPEAPYKDPDQVKTIFLFL 94
             Y  ++ L L  AE HF+      V   +         V  P        Q+  +    
Sbjct: 62  KKYVAFLKLFLETAEKHFMV--GHRVHYYVFTD--QPAAV--PRVTLGTGRQLSVL---- 111

Query: 95  IKQLNGLKDPKDPAFKRYFYLLENLA 120
             ++   K  +D + +R   + +   
Sbjct: 112 --EVRAYKRWQDVSMRRMEMISDFCE 135


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.140    0.411 

Gapped
Lambda     K      H
   0.267   0.0641    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 902,931
Number of extensions: 40766
Number of successful extensions: 88
Number of sequences better than 10.0: 1
Number of HSP's gapped: 88
Number of HSP's successfully gapped: 5
Length of query: 253
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 170
Effective length of database: 1,268,006
Effective search space: 215561020
Effective search space used: 215561020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.0 bits)