Query psy10771
Match_columns 100
No_of_seqs 81 out of 83
Neff 2.3
Searched_HMMs 46136
Date Fri Aug 16 18:05:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10771.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10771hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14580 LRR_9: Leucine-rich r 98.9 3.4E-10 7.3E-15 83.4 -0.1 59 39-99 1-59 (175)
2 PF12799 LRR_4: Leucine Rich r 97.5 1.4E-05 3.1E-10 47.2 -0.5 40 59-99 1-41 (44)
3 KOG0531|consensus 96.6 0.00042 9E-09 54.6 -0.3 56 42-99 79-135 (414)
4 PF14580 LRR_9: Leucine-rich r 96.2 0.0011 2.4E-08 49.0 -0.4 40 58-97 63-103 (175)
5 smart00365 LRR_SD22 Leucine-ri 96.1 0.0015 3.3E-08 36.2 0.1 18 82-99 2-19 (26)
6 KOG1644|consensus 95.2 0.0054 1.2E-07 49.3 0.0 40 59-99 42-81 (233)
7 KOG2123|consensus 94.5 0.013 2.8E-07 49.8 0.6 59 39-98 1-79 (388)
8 PF13855 LRR_8: Leucine rich r 93.1 0.0085 1.8E-07 35.4 -2.2 37 58-94 24-61 (61)
9 PF13855 LRR_8: Leucine rich r 92.9 0.011 2.3E-07 35.0 -1.9 40 59-99 1-42 (61)
10 KOG0531|consensus 90.7 0.082 1.8E-06 41.8 0.3 44 55-99 114-157 (414)
11 PF13516 LRR_6: Leucine Rich r 89.1 0.094 2E-06 26.8 -0.4 16 81-96 1-16 (24)
12 COG4886 Leucine-rich repeat (L 88.7 0.15 3.3E-06 38.9 0.4 37 60-97 141-178 (394)
13 PF00560 LRR_1: Leucine Rich R 84.0 0.21 4.6E-06 25.6 -0.7 16 83-98 1-16 (22)
14 KOG4194|consensus 82.7 0.42 9E-06 44.2 0.2 46 52-98 283-333 (873)
15 smart00370 LRR Leucine-rich re 81.5 0.46 9.9E-06 24.5 -0.0 17 82-98 2-18 (26)
16 smart00369 LRR_TYP Leucine-ric 81.5 0.46 9.9E-06 24.5 -0.0 17 82-98 2-18 (26)
17 COG4886 Leucine-rich repeat (L 80.2 0.85 1.8E-05 34.9 1.0 63 31-99 141-203 (394)
18 PF13504 LRR_7: Leucine rich r 76.2 0.72 1.6E-05 22.8 -0.2 16 82-97 1-16 (17)
19 KOG4194|consensus 75.5 0.66 1.4E-05 43.0 -0.8 42 57-98 100-141 (873)
20 KOG1859|consensus 74.1 1.4 3E-05 41.8 0.8 41 56-97 184-224 (1096)
21 KOG1909|consensus 72.5 2.4 5.2E-05 36.4 1.8 38 60-97 93-135 (382)
22 smart00368 LRR_RI Leucine rich 70.6 1.4 3E-05 23.7 -0.0 14 82-95 2-15 (28)
23 KOG1644|consensus 67.6 1.4 3E-05 35.7 -0.6 46 53-98 58-104 (233)
24 cd00116 LRR_RI Leucine-rich re 64.2 2.3 5E-05 30.6 0.1 36 59-94 221-262 (319)
25 KOG1259|consensus 62.7 1.5 3.2E-05 38.3 -1.3 41 58-99 306-346 (490)
26 cd00116 LRR_RI Leucine-rich re 58.6 3.5 7.7E-05 29.7 0.2 11 83-93 166-176 (319)
27 KOG3207|consensus 52.6 2.7 5.9E-05 37.2 -1.4 41 57-97 119-161 (505)
28 KOG1909|consensus 49.5 4.4 9.6E-05 34.8 -0.6 37 59-96 185-227 (382)
29 KOG4341|consensus 45.9 9.6 0.00021 33.8 0.9 39 53-91 184-225 (483)
30 KOG3207|consensus 45.8 11 0.00023 33.7 1.2 53 34-97 183-237 (505)
31 KOG0472|consensus 41.8 7.2 0.00016 35.0 -0.5 39 57-95 503-541 (565)
32 smart00367 LRR_CC Leucine-rich 38.1 10 0.00022 19.6 -0.1 12 81-92 1-12 (26)
33 KOG2120|consensus 37.0 16 0.00034 31.9 0.8 45 51-95 177-223 (419)
34 PLN03150 hypothetical protein; 36.7 10 0.00022 32.6 -0.4 35 59-94 442-478 (623)
35 PRK15387 E3 ubiquitin-protein 35.8 8.2 0.00018 35.2 -1.1 34 61-97 224-257 (788)
36 PF09003 Phage_integ_N: Bacter 33.9 25 0.00053 23.9 1.2 28 4-31 13-44 (75)
37 PLN03150 hypothetical protein; 33.5 12 0.00026 32.1 -0.4 40 55-95 462-503 (623)
38 KOG1947|consensus 26.9 27 0.00059 26.4 0.6 17 74-90 287-303 (482)
39 KOG3870|consensus 26.8 11 0.00024 33.0 -1.7 18 8-25 115-132 (434)
40 PLN00113 leucine-rich repeat r 26.8 18 0.00039 31.2 -0.4 37 58-94 92-130 (968)
41 PLN00113 leucine-rich repeat r 26.2 16 0.00034 31.5 -0.9 36 59-95 499-536 (968)
42 PRK15370 E3 ubiquitin-protein 24.3 22 0.00048 32.0 -0.3 16 80-95 344-359 (754)
43 KOG0472|consensus 23.5 18 0.00038 32.6 -1.1 42 56-98 203-244 (565)
44 PRK15387 E3 ubiquitin-protein 23.3 29 0.00063 31.8 0.2 34 61-95 424-458 (788)
45 KOG0618|consensus 22.4 48 0.001 32.1 1.4 39 58-96 406-444 (1081)
46 PF13656 RNA_pol_L_2: RNA poly 22.3 75 0.0016 20.7 2.0 23 12-34 29-51 (77)
47 PF09495 DUF2462: Protein of u 21.9 19 0.00042 24.2 -0.9 37 17-53 32-69 (82)
48 PF13306 LRR_5: Leucine rich r 21.8 17 0.00036 22.9 -1.2 12 80-91 56-67 (129)
49 COG2827 Predicted endonuclease 21.6 22 0.00048 25.1 -0.7 24 39-62 18-41 (95)
50 PF08519 RFC1: Replication fac 21.2 32 0.00069 25.2 0.0 52 30-81 81-132 (155)
51 COG5238 RNA1 Ran GTPase-activa 20.5 45 0.00098 28.9 0.8 38 61-98 94-136 (388)
No 1
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.87 E-value=3.4e-10 Score=83.39 Aligned_cols=59 Identities=27% Similarity=0.384 Sum_probs=12.8
Q ss_pred hhHHhHHHHHhhcccccccccchhhhhcchhhhhhHhhHHHhcchhhhhhhccCCcccccC
Q psy10771 39 WTTVSEDLVRKRAEHNDKEIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKLGK 99 (100)
Q Consensus 39 MvrIT~eLIRKraEHNe~~L~tLEElsLHQq~IEkIE~L~~~CRnLkILYLQNNlIskIEN 99 (100)
|||+|.|+|++.+.+++.. .+.|++|+.-.|.+||.++..+.+|+.|+|++|.|++||+
T Consensus 1 ~~~lt~~~i~~~~~~~n~~--~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~ 59 (175)
T PF14580_consen 1 MVRLTANMIEQIAQYNNPV--KLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEG 59 (175)
T ss_dssp -------------------------------------S--TT-TT--EEE-TTS--S--TT
T ss_pred Ccccccccccccccccccc--ccccccccccccccccchhhhhcCCCEEECCCCCCccccC
Confidence 8999999999999999987 7899999999999999999778999999999999999986
No 2
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.54 E-value=1.4e-05 Score=47.21 Aligned_cols=40 Identities=30% Similarity=0.390 Sum_probs=34.3
Q ss_pred cchhhhhcchhhhhhHhh-HHHhcchhhhhhhccCCcccccC
Q psy10771 59 GTLEEIALHQEHIEKIEA-LDKWCKHLRILLLHSNIISKLGK 99 (100)
Q Consensus 59 ~tLEElsLHQq~IEkIE~-L~~~CRnLkILYLQNNlIskIEN 99 (100)
.+|++++|+.-+|..|+. ++ -|++|+.|+|++|.|+.|+.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~-~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELS-NLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGT-TCTTSSEEEETSSCCSBEGG
T ss_pred CcceEEEccCCCCcccCchHh-CCCCCCEEEecCCCCCCCcC
Confidence 368999999999999987 88 89999999999999998763
No 3
>KOG0531|consensus
Probab=96.64 E-value=0.00042 Score=54.65 Aligned_cols=56 Identities=32% Similarity=0.407 Sum_probs=47.1
Q ss_pred HhHHHHHhhcccccccccchhhhhcchhhhhhHhh-HHHhcchhhhhhhccCCcccccC
Q psy10771 42 VSEDLVRKRAEHNDKEIGTLEEIALHQEHIEKIEA-LDKWCKHLRILLLHSNIISKLGK 99 (100)
Q Consensus 42 IT~eLIRKraEHNe~~L~tLEElsLHQq~IEkIE~-L~~~CRnLkILYLQNNlIskIEN 99 (100)
+....|.+ .+..-+.+.+|++++|++..|++|+. ++ .|.+|+.|.|.+|.|++|++
T Consensus 79 l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~~~l~-~~~~L~~L~ls~N~I~~i~~ 135 (414)
T KOG0531|consen 79 LRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIENLLS-SLVNLQVLDLSFNKITKLEG 135 (414)
T ss_pred cchhhhhh-hhcccccccceeeeeccccchhhcccchh-hhhcchheeccccccccccc
Confidence 44555555 44557888999999999999999999 77 99999999999999999875
No 4
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=96.17 E-value=0.0011 Score=49.02 Aligned_cols=40 Identities=35% Similarity=0.458 Sum_probs=13.3
Q ss_pred ccchhhhhcchhhhhhHh-hHHHhcchhhhhhhccCCcccc
Q psy10771 58 IGTLEEIALHQEHIEKIE-ALDKWCKHLRILLLHSNIISKL 97 (100)
Q Consensus 58 L~tLEElsLHQq~IEkIE-~L~~~CRnLkILYLQNNlIskI 97 (100)
+.+|+++.++.-.|..|+ .+...|++|+.|||.+|.|+.+
T Consensus 63 L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l 103 (175)
T PF14580_consen 63 LPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKISDL 103 (175)
T ss_dssp -TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS---SC
T ss_pred hhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCcCCCh
Confidence 455566666666666653 3444566666666666666544
No 5
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=96.10 E-value=0.0015 Score=36.23 Aligned_cols=18 Identities=33% Similarity=0.349 Sum_probs=16.6
Q ss_pred chhhhhhhccCCcccccC
Q psy10771 82 KHLRILLLHSNIISKLGK 99 (100)
Q Consensus 82 RnLkILYLQNNlIskIEN 99 (100)
.+|+.|+|+.|.|++|||
T Consensus 2 ~~L~~L~L~~NkI~~IEn 19 (26)
T smart00365 2 TNLEELDLSQNKIKKIEN 19 (26)
T ss_pred CccCEEECCCCccceecC
Confidence 478999999999999998
No 6
>KOG1644|consensus
Probab=95.18 E-value=0.0054 Score=49.28 Aligned_cols=40 Identities=25% Similarity=0.476 Sum_probs=28.5
Q ss_pred cchhhhhcchhhhhhHhhHHHhcchhhhhhhccCCcccccC
Q psy10771 59 GTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKLGK 99 (100)
Q Consensus 59 ~tLEElsLHQq~IEkIE~L~~~CRnLkILYLQNNlIskIEN 99 (100)
.....|.|.+-||-+++++. .=++|.-|+|.||.|..|++
T Consensus 42 d~~d~iDLtdNdl~~l~~lp-~l~rL~tLll~nNrIt~I~p 81 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLDNLP-HLPRLHTLLLNNNRITRIDP 81 (233)
T ss_pred cccceecccccchhhcccCC-CccccceEEecCCcceeecc
Confidence 34556777777777777776 56677777777777777765
No 7
>KOG2123|consensus
Probab=94.52 E-value=0.013 Score=49.82 Aligned_cols=59 Identities=29% Similarity=0.454 Sum_probs=46.6
Q ss_pred hhHHhHHHHHhhcc----cc----------------cccccchhhhhcchhhhhhHhhHHHhcchhhhhhhccCCccccc
Q psy10771 39 WTTVSEDLVRKRAE----HN----------------DKEIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKLG 98 (100)
Q Consensus 39 MvrIT~eLIRKraE----HN----------------e~~L~tLEElsLHQq~IEkIE~L~~~CRnLkILYLQNNlIskIE 98 (100)
|+++|++++--||. || =.....||-|+|+--.|..++-+. -|.+||-|||--|.|+.+.
T Consensus 1 M~kLTe~mV~~raK~sdl~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~pl~-rCtrLkElYLRkN~I~sld 79 (388)
T KOG2123|consen 1 MVKLTESMVYIRAKCSDLENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLAPLQ-RCTRLKELYLRKNCIESLD 79 (388)
T ss_pred CchHHHHHHHHHHHhhHHHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccchhHH-HHHHHHHHHHHhcccccHH
Confidence 77888887755522 11 123567899999999999999999 8999999999999998763
No 8
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=93.07 E-value=0.0085 Score=35.44 Aligned_cols=37 Identities=24% Similarity=0.284 Sum_probs=20.5
Q ss_pred ccchhhhhcchhhhhhHhh-HHHhcchhhhhhhccCCc
Q psy10771 58 IGTLEEIALHQEHIEKIEA-LDKWCKHLRILLLHSNII 94 (100)
Q Consensus 58 L~tLEElsLHQq~IEkIE~-L~~~CRnLkILYLQNNlI 94 (100)
+.+|++++|+.-.|..|+. .=..|++|+.|+|++|.|
T Consensus 24 l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 24 LPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp GTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4556666666666665542 112556666666666654
No 9
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=92.93 E-value=0.011 Score=35.02 Aligned_cols=40 Identities=20% Similarity=0.303 Sum_probs=33.5
Q ss_pred cchhhhhcchhhhhhHh--hHHHhcchhhhhhhccCCcccccC
Q psy10771 59 GTLEEIALHQEHIEKIE--ALDKWCKHLRILLLHSNIISKLGK 99 (100)
Q Consensus 59 ~tLEElsLHQq~IEkIE--~L~~~CRnLkILYLQNNlIskIEN 99 (100)
.+|+++.|+.-.|..|. .++ -|++|+.|+|++|.|..|+.
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~-~l~~L~~L~l~~N~l~~i~~ 42 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFS-NLPNLETLDLSNNNLTSIPP 42 (61)
T ss_dssp TTESEEEETSSTESEECTTTTT-TGTTESEEEETSSSESEEET
T ss_pred CcCcEEECCCCCCCccCHHHHc-CCCCCCEeEccCCccCccCH
Confidence 36888999998899886 345 78999999999999998763
No 10
>KOG0531|consensus
Probab=90.70 E-value=0.082 Score=41.83 Aligned_cols=44 Identities=27% Similarity=0.317 Sum_probs=38.7
Q ss_pred cccccchhhhhcchhhhhhHhhHHHhcchhhhhhhccCCcccccC
Q psy10771 55 DKEIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKLGK 99 (100)
Q Consensus 55 e~~L~tLEElsLHQq~IEkIE~L~~~CRnLkILYLQNNlIskIEN 99 (100)
.+.+.+|++++|+--.|.+|+.++ .|..|+-|++-+|.|+.+++
T Consensus 114 l~~~~~L~~L~ls~N~I~~i~~l~-~l~~L~~L~l~~N~i~~~~~ 157 (414)
T KOG0531|consen 114 LSSLVNLQVLDLSFNKITKLEGLS-TLTLLKELNLSGNLISDISG 157 (414)
T ss_pred hhhhhcchheeccccccccccchh-hccchhhheeccCcchhccC
Confidence 678889999999999999999999 55569999999999998875
No 11
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=89.10 E-value=0.094 Score=26.83 Aligned_cols=16 Identities=31% Similarity=0.318 Sum_probs=11.5
Q ss_pred cchhhhhhhccCCccc
Q psy10771 81 CKHLRILLLHSNIISK 96 (100)
Q Consensus 81 CRnLkILYLQNNlIsk 96 (100)
|++|+.|.|++|.|+.
T Consensus 1 ~~~L~~L~l~~n~i~~ 16 (24)
T PF13516_consen 1 NPNLETLDLSNNQITD 16 (24)
T ss_dssp -TT-SEEE-TSSBEHH
T ss_pred CCCCCEEEccCCcCCH
Confidence 7899999999999864
No 12
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=88.71 E-value=0.15 Score=38.90 Aligned_cols=37 Identities=32% Similarity=0.385 Sum_probs=20.5
Q ss_pred chhhhhcchhhhhhH-hhHHHhcchhhhhhhccCCcccc
Q psy10771 60 TLEEIALHQEHIEKI-EALDKWCKHLRILLLHSNIISKL 97 (100)
Q Consensus 60 tLEElsLHQq~IEkI-E~L~~~CRnLkILYLQNNlIskI 97 (100)
.|+++++++-.|+.+ +.++ .|++|+.|.+++|.|+.+
T Consensus 141 nL~~L~l~~N~i~~l~~~~~-~l~~L~~L~l~~N~l~~l 178 (394)
T COG4886 141 NLKELDLSDNKIESLPSPLR-NLPNLKNLDLSFNDLSDL 178 (394)
T ss_pred hcccccccccchhhhhhhhh-ccccccccccCCchhhhh
Confidence 555555555555555 3444 555555555555555544
No 13
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=83.97 E-value=0.21 Score=25.55 Aligned_cols=16 Identities=25% Similarity=0.328 Sum_probs=13.6
Q ss_pred hhhhhhhccCCccccc
Q psy10771 83 HLRILLLHSNIISKLG 98 (100)
Q Consensus 83 nLkILYLQNNlIskIE 98 (100)
+|+.|+|.+|.|+.|.
T Consensus 1 ~L~~Ldls~n~l~~ip 16 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIP 16 (22)
T ss_dssp TESEEEETSSEESEEG
T ss_pred CccEEECCCCcCEeCC
Confidence 5889999999998764
No 14
>KOG4194|consensus
Probab=82.67 E-value=0.42 Score=44.25 Aligned_cols=46 Identities=28% Similarity=0.398 Sum_probs=37.8
Q ss_pred cccccccc---chhhhhcchhhhhhHh--hHHHhcchhhhhhhccCCccccc
Q psy10771 52 EHNDKEIG---TLEEIALHQEHIEKIE--ALDKWCKHLRILLLHSNIISKLG 98 (100)
Q Consensus 52 EHNe~~L~---tLEElsLHQq~IEkIE--~L~~~CRnLkILYLQNNlIskIE 98 (100)
+-|+|-++ +|++++|++-.|++|+ .-+ .|..|+-|.|.+|.|.++.
T Consensus 283 ~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Ws-ftqkL~~LdLs~N~i~~l~ 333 (873)
T KOG4194|consen 283 AVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWS-FTQKLKELDLSSNRITRLD 333 (873)
T ss_pred hhhcccccccchhhhhccchhhhheeecchhh-hcccceeEeccccccccCC
Confidence 35677655 5678999999999996 244 7999999999999998864
No 15
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=81.51 E-value=0.46 Score=24.45 Aligned_cols=17 Identities=41% Similarity=0.407 Sum_probs=14.4
Q ss_pred chhhhhhhccCCccccc
Q psy10771 82 KHLRILLLHSNIISKLG 98 (100)
Q Consensus 82 RnLkILYLQNNlIskIE 98 (100)
.+|+.|+|.+|.|..|.
T Consensus 2 ~~L~~L~L~~N~l~~lp 18 (26)
T smart00370 2 PNLRELDLSNNQLSSLP 18 (26)
T ss_pred CCCCEEECCCCcCCcCC
Confidence 46899999999998774
No 16
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=81.51 E-value=0.46 Score=24.45 Aligned_cols=17 Identities=41% Similarity=0.407 Sum_probs=14.4
Q ss_pred chhhhhhhccCCccccc
Q psy10771 82 KHLRILLLHSNIISKLG 98 (100)
Q Consensus 82 RnLkILYLQNNlIskIE 98 (100)
.+|+.|+|.+|.|..|.
T Consensus 2 ~~L~~L~L~~N~l~~lp 18 (26)
T smart00369 2 PNLRELDLSNNQLSSLP 18 (26)
T ss_pred CCCCEEECCCCcCCcCC
Confidence 46899999999998774
No 17
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=80.17 E-value=0.85 Score=34.88 Aligned_cols=63 Identities=22% Similarity=0.195 Sum_probs=48.3
Q ss_pred eeccceehhhHHhHHHHHhhcccccccccchhhhhcchhhhhhHhhHHHhcchhhhhhhccCCcccccC
Q psy10771 31 KLKKLSLFWTTVSEDLVRKRAEHNDKEIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKLGK 99 (100)
Q Consensus 31 ~~~~~~~~MvrIT~eLIRKraEHNe~~L~tLEElsLHQq~IEkIE~L~~~CRnLkILYLQNNlIskIEN 99 (100)
+|+.|++..-.|+.-- ..-+.+.+|+.+++++-+|..+.....-..+|+.|++++|.|+.|..
T Consensus 141 nL~~L~l~~N~i~~l~------~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~ 203 (394)
T COG4886 141 NLKELDLSDNKIESLP------SPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPP 203 (394)
T ss_pred hcccccccccchhhhh------hhhhccccccccccCCchhhhhhhhhhhhhhhhheeccCCccccCch
Confidence 3555555544444321 45678899999999999999998876578999999999999998764
No 18
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=76.19 E-value=0.72 Score=22.80 Aligned_cols=16 Identities=38% Similarity=0.484 Sum_probs=10.2
Q ss_pred chhhhhhhccCCcccc
Q psy10771 82 KHLRILLLHSNIISKL 97 (100)
Q Consensus 82 RnLkILYLQNNlIskI 97 (100)
.+|+.|+|.+|.+..+
T Consensus 1 ~~L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 1 PNLRTLDLSNNRLTSL 16 (17)
T ss_dssp TT-SEEEETSS--SSE
T ss_pred CccCEEECCCCCCCCC
Confidence 4789999999987653
No 19
>KOG4194|consensus
Probab=75.53 E-value=0.66 Score=43.00 Aligned_cols=42 Identities=26% Similarity=0.435 Sum_probs=37.6
Q ss_pred cccchhhhhcchhhhhhHhhHHHhcchhhhhhhccCCccccc
Q psy10771 57 EIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKLG 98 (100)
Q Consensus 57 ~L~tLEElsLHQq~IEkIE~L~~~CRnLkILYLQNNlIskIE 98 (100)
.+.+|+|++|-.-++++|-..+..-.+|++|.|++|.|+.|+
T Consensus 100 nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~ 141 (873)
T KOG4194|consen 100 NLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVT 141 (873)
T ss_pred cCCcceeeeeccchhhhcccccccccceeEEeeecccccccc
Confidence 478899999999999999888778889999999999999876
No 20
>KOG1859|consensus
Probab=74.12 E-value=1.4 Score=41.83 Aligned_cols=41 Identities=22% Similarity=0.340 Sum_probs=36.5
Q ss_pred ccccchhhhhcchhhhhhHhhHHHhcchhhhhhhccCCcccc
Q psy10771 56 KEIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL 97 (100)
Q Consensus 56 ~~L~tLEElsLHQq~IEkIE~L~~~CRnLkILYLQNNlIskI 97 (100)
+.+.-|++++|+--...+.++|- ||.+||||.|.-|...++
T Consensus 184 qll~ale~LnLshNk~~~v~~Lr-~l~~LkhLDlsyN~L~~v 224 (1096)
T KOG1859|consen 184 QLLPALESLNLSHNKFTKVDNLR-RLPKLKHLDLSYNCLRHV 224 (1096)
T ss_pred HHHHHhhhhccchhhhhhhHHHH-hcccccccccccchhccc
Confidence 45778999999999999999998 999999999999987654
No 21
>KOG1909|consensus
Probab=72.55 E-value=2.4 Score=36.42 Aligned_cols=38 Identities=24% Similarity=0.323 Sum_probs=30.7
Q ss_pred chhhhhcc-----hhhhhhHhhHHHhcchhhhhhhccCCcccc
Q psy10771 60 TLEEIALH-----QEHIEKIEALDKWCKHLRILLLHSNIISKL 97 (100)
Q Consensus 60 tLEElsLH-----Qq~IEkIE~L~~~CRnLkILYLQNNlIskI 97 (100)
.|+.|+|| .+.++..+.+=.-|-+|++|||.||-+++.
T Consensus 93 ~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ 135 (382)
T KOG1909|consen 93 KLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPE 135 (382)
T ss_pred ceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChh
Confidence 56677666 477888887656799999999999998865
No 22
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=70.57 E-value=1.4 Score=23.73 Aligned_cols=14 Identities=36% Similarity=0.354 Sum_probs=12.4
Q ss_pred chhhhhhhccCCcc
Q psy10771 82 KHLRILLLHSNIIS 95 (100)
Q Consensus 82 RnLkILYLQNNlIs 95 (100)
++|+.|+|++|.|.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 67999999999885
No 23
>KOG1644|consensus
Probab=67.62 E-value=1.4 Score=35.73 Aligned_cols=46 Identities=30% Similarity=0.539 Sum_probs=36.5
Q ss_pred cccccccchhhhhcchhhhhhHh-hHHHhcchhhhhhhccCCccccc
Q psy10771 53 HNDKEIGTLEEIALHQEHIEKIE-ALDKWCKHLRILLLHSNIISKLG 98 (100)
Q Consensus 53 HNe~~L~tLEElsLHQq~IEkIE-~L~~~CRnLkILYLQNNlIskIE 98 (100)
.|=..+..|--|.|+.-.|-+|+ +|+.+-++|+-|+|.||.|-+++
T Consensus 58 ~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~ 104 (233)
T KOG1644|consen 58 DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELG 104 (233)
T ss_pred ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhh
Confidence 34455677778888888898886 78888888999999998887664
No 24
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=64.19 E-value=2.3 Score=30.59 Aligned_cols=36 Identities=28% Similarity=0.246 Sum_probs=16.3
Q ss_pred cchhhhhcchhhhhh--HhhHHHhc----chhhhhhhccCCc
Q psy10771 59 GTLEEIALHQEHIEK--IEALDKWC----KHLRILLLHSNII 94 (100)
Q Consensus 59 ~tLEElsLHQq~IEk--IE~L~~~C----RnLkILYLQNNlI 94 (100)
.+|++++++.-.+.. +..+...| ..|+.|++.+|.|
T Consensus 221 ~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i 262 (319)
T cd00116 221 KSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDI 262 (319)
T ss_pred CCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCC
Confidence 345555555444432 22233332 3555555555554
No 25
>KOG1259|consensus
Probab=62.71 E-value=1.5 Score=38.35 Aligned_cols=41 Identities=22% Similarity=0.313 Sum_probs=28.3
Q ss_pred ccchhhhhcchhhhhhHhhHHHhcchhhhhhhccCCcccccC
Q psy10771 58 IGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKLGK 99 (100)
Q Consensus 58 L~tLEElsLHQq~IEkIE~L~~~CRnLkILYLQNNlIskIEN 99 (100)
+..++-+.+|+-.|-.++.|. .-.+|++|.|.+|..+++++
T Consensus 306 ~Pkir~L~lS~N~i~~v~nLa-~L~~L~~LDLS~N~Ls~~~G 346 (490)
T KOG1259|consen 306 APKLRRLILSQNRIRTVQNLA-ELPQLQLLDLSGNLLAECVG 346 (490)
T ss_pred ccceeEEeccccceeeehhhh-hcccceEeecccchhHhhhh
Confidence 445555666666666666666 56777888888888887764
No 26
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=58.56 E-value=3.5 Score=29.66 Aligned_cols=11 Identities=36% Similarity=0.268 Sum_probs=4.6
Q ss_pred hhhhhhhccCC
Q psy10771 83 HLRILLLHSNI 93 (100)
Q Consensus 83 nLkILYLQNNl 93 (100)
+|+.|+|.+|.
T Consensus 166 ~L~~L~l~~n~ 176 (319)
T cd00116 166 DLKELNLANNG 176 (319)
T ss_pred CcCEEECcCCC
Confidence 34444444443
No 27
>KOG3207|consensus
Probab=52.56 E-value=2.7 Score=37.23 Aligned_cols=41 Identities=24% Similarity=0.320 Sum_probs=35.5
Q ss_pred cccchhhhhcchhhhhhHh--hHHHhcchhhhhhhccCCcccc
Q psy10771 57 EIGTLEEIALHQEHIEKIE--ALDKWCKHLRILLLHSNIISKL 97 (100)
Q Consensus 57 ~L~tLEElsLHQq~IEkIE--~L~~~CRnLkILYLQNNlIskI 97 (100)
-+++|++|+|-|-.++.++ .-...|++++-|.|.-|++..+
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw 161 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNW 161 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhH
Confidence 4778999999999999887 3666999999999999998765
No 28
>KOG1909|consensus
Probab=49.50 E-value=4.4 Score=34.83 Aligned_cols=37 Identities=43% Similarity=0.651 Sum_probs=29.6
Q ss_pred cchhhhhcchhhhhh-----H-hhHHHhcchhhhhhhccCCccc
Q psy10771 59 GTLEEIALHQEHIEK-----I-EALDKWCKHLRILLLHSNIISK 96 (100)
Q Consensus 59 ~tLEElsLHQq~IEk-----I-E~L~~~CRnLkILYLQNNlIsk 96 (100)
.+|+++.+.|-.|.- + +.+. .|++|+.|.||.|-.+.
T Consensus 185 ~~leevr~~qN~I~~eG~~al~eal~-~~~~LevLdl~DNtft~ 227 (382)
T KOG1909|consen 185 PTLEEVRLSQNGIRPEGVTALAEALE-HCPHLEVLDLRDNTFTL 227 (382)
T ss_pred cccceEEEecccccCchhHHHHHHHH-hCCcceeeecccchhhh
Confidence 789999999977643 2 3455 99999999999997653
No 29
>KOG4341|consensus
Probab=45.86 E-value=9.6 Score=33.77 Aligned_cols=39 Identities=23% Similarity=0.358 Sum_probs=30.8
Q ss_pred cccccccchhhhhcch-hhhhhH--hhHHHhcchhhhhhhcc
Q psy10771 53 HNDKEIGTLEEIALHQ-EHIEKI--EALDKWCKHLRILLLHS 91 (100)
Q Consensus 53 HNe~~L~tLEElsLHQ-q~IEkI--E~L~~~CRnLkILYLQN 91 (100)
|-..+-++|++|+||. -+|-.. +.|.+-||+|+.|.+|-
T Consensus 184 sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSw 225 (483)
T KOG4341|consen 184 SLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSW 225 (483)
T ss_pred HHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhcc
Confidence 5556778899999998 777765 56888999999988874
No 30
>KOG3207|consensus
Probab=45.82 E-value=11 Score=33.65 Aligned_cols=53 Identities=19% Similarity=0.238 Sum_probs=35.6
Q ss_pred cceehhhHHhHHHHHhhcccccccccchhhhhcchhhhh--hHhhHHHhcchhhhhhhccCCcccc
Q psy10771 34 KLSLFWTTVSEDLVRKRAEHNDKEIGTLEEIALHQEHIE--KIEALDKWCKHLRILLLHSNIISKL 97 (100)
Q Consensus 34 ~~~~~MvrIT~eLIRKraEHNe~~L~tLEElsLHQq~IE--kIE~L~~~CRnLkILYLQNNlIskI 97 (100)
+|+.|+...|++ .++.|+-|.|++=++- .|..+-.-||+|+-||||.|.+--+
T Consensus 183 rl~~~~~s~~~~-----------~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~ 237 (505)
T KOG3207|consen 183 RLSNFISSNTTL-----------LLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILI 237 (505)
T ss_pred cccCCccccchh-----------hhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccce
Confidence 455666666655 5666777777665543 3445556799999999999954333
No 31
>KOG0472|consensus
Probab=41.83 E-value=7.2 Score=35.02 Aligned_cols=39 Identities=21% Similarity=0.302 Sum_probs=27.9
Q ss_pred cccchhhhhcchhhhhhHhhHHHhcchhhhhhhccCCcc
Q psy10771 57 EIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIIS 95 (100)
Q Consensus 57 ~L~tLEElsLHQq~IEkIE~L~~~CRnLkILYLQNNlIs 95 (100)
-+++|+-++|.|-+|+.|--+-.-|-||++|.|.+|.|+
T Consensus 503 nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 503 NMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred hhhhcceeccCCCchhhCChhhccccceeEEEecCCccC
Confidence 456677777888888887643337888888888887764
No 32
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=38.12 E-value=10 Score=19.61 Aligned_cols=12 Identities=42% Similarity=0.570 Sum_probs=7.9
Q ss_pred cchhhhhhhccC
Q psy10771 81 CKHLRILLLHSN 92 (100)
Q Consensus 81 CRnLkILYLQNN 92 (100)
|++|++|.|.+.
T Consensus 1 c~~L~~L~l~~C 12 (26)
T smart00367 1 CPNLRELDLSGC 12 (26)
T ss_pred CCCCCEeCCCCC
Confidence 667777766654
No 33
>KOG2120|consensus
Probab=37.03 E-value=16 Score=31.91 Aligned_cols=45 Identities=22% Similarity=0.237 Sum_probs=37.5
Q ss_pred cccccccccchhhhhcchhhhhhHh--hHHHhcchhhhhhhccCCcc
Q psy10771 51 AEHNDKEIGTLEEIALHQEHIEKIE--ALDKWCKHLRILLLHSNIIS 95 (100)
Q Consensus 51 aEHNe~~L~tLEElsLHQq~IEkIE--~L~~~CRnLkILYLQNNlIs 95 (100)
|||.+-.=+.|++++|+.-.|+.=. .+-..|++||-|-|-+|...
T Consensus 177 ae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~Ld 223 (419)
T KOG2120|consen 177 AEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLD 223 (419)
T ss_pred hhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccC
Confidence 8899888888999999999999864 23349999999999988653
No 34
>PLN03150 hypothetical protein; Provisional
Probab=36.68 E-value=10 Score=32.56 Aligned_cols=35 Identities=29% Similarity=0.321 Sum_probs=14.8
Q ss_pred cchhhhhcchhhhh-hHh-hHHHhcchhhhhhhccCCc
Q psy10771 59 GTLEEIALHQEHIE-KIE-ALDKWCKHLRILLLHSNII 94 (100)
Q Consensus 59 ~tLEElsLHQq~IE-kIE-~L~~~CRnLkILYLQNNlI 94 (100)
..|+.++|+.-.+. .|- .++ .|++|+.|+|++|.+
T Consensus 442 ~~L~~L~Ls~N~l~g~iP~~~~-~l~~L~~LdLs~N~l 478 (623)
T PLN03150 442 RHLQSINLSGNSIRGNIPPSLG-SITSLEVLDLSYNSF 478 (623)
T ss_pred CCCCEEECCCCcccCcCChHHh-CCCCCCEEECCCCCC
Confidence 34444444444433 221 232 344444455544444
No 35
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=35.82 E-value=8.2 Score=35.18 Aligned_cols=34 Identities=18% Similarity=0.347 Sum_probs=16.6
Q ss_pred hhhhhcchhhhhhHhhHHHhcchhhhhhhccCCcccc
Q psy10771 61 LEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL 97 (100)
Q Consensus 61 LEElsLHQq~IEkIE~L~~~CRnLkILYLQNNlIskI 97 (100)
|+.|+|..-+|..|.. .+++|+.|+|++|.|+.+
T Consensus 224 L~~L~L~~N~Lt~LP~---lp~~Lk~LdLs~N~LtsL 257 (788)
T PRK15387 224 ITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSL 257 (788)
T ss_pred CCEEEccCCcCCCCCC---CCCCCcEEEecCCccCcc
Confidence 4455555544444332 245555555555555443
No 36
>PF09003 Phage_integ_N: Bacteriophage lambda integrase, N-terminal domain ; InterPro: IPR015094 The amino terminal domain of bacteriophage lambda integrase folds into a three-stranded, antiparallel beta-sheet that packs against a C-terminal alpha-helix, adopting a fold that is structurally related to the three-stranded beta-sheet family of DNA-binding domains (which includes the GCC-box DNA-binding domain and the N-terminal domain of Tn916 integrase). This domain is responsible for high-affinity binding to each of the five DNA arm-type sites and is also a context-sensitive modulator of DNA cleavage []. ; GO: 0003677 DNA binding, 0008907 integrase activity, 0015074 DNA integration; PDB: 1Z1G_B 1Z1B_A 2WCC_3 1KJK_A.
Probab=33.86 E-value=25 Score=23.88 Aligned_cols=28 Identities=21% Similarity=0.395 Sum_probs=15.9
Q ss_pred Cccccccch----hheeeeecccccceeeeee
Q psy10771 4 PKNLYRHSE----LYMYRIIHPVKNRIISFVK 31 (100)
Q Consensus 4 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 31 (100)
|.|||.-.. --.|+--||+...-+|+-.
T Consensus 13 P~NLy~~~dkr~~k~Yy~Yr~P~tGk~~~LG~ 44 (75)
T PF09003_consen 13 PPNLYCRKDKRNGKGYYQYRNPITGKEHGLGT 44 (75)
T ss_dssp -TTEEEETT-----SEEEEE-TTTS-EEEEES
T ss_pred CCCccccCCcCcceeEEEEecCCCCceeeCCC
Confidence 778887642 1123444999999888765
No 37
>PLN03150 hypothetical protein; Provisional
Probab=33.52 E-value=12 Score=32.14 Aligned_cols=40 Identities=35% Similarity=0.385 Sum_probs=31.8
Q ss_pred cccccchhhhhcchhhhhh-H-hhHHHhcchhhhhhhccCCcc
Q psy10771 55 DKEIGTLEEIALHQEHIEK-I-EALDKWCKHLRILLLHSNIIS 95 (100)
Q Consensus 55 e~~L~tLEElsLHQq~IEk-I-E~L~~~CRnLkILYLQNNlIs 95 (100)
-+.+.+|+.++|+.-.+.. | +.++ -|.+|+.|+|.+|.++
T Consensus 462 ~~~l~~L~~LdLs~N~lsg~iP~~l~-~L~~L~~L~Ls~N~l~ 503 (623)
T PLN03150 462 LGSITSLEVLDLSYNSFNGSIPESLG-QLTSLRILNLNGNSLS 503 (623)
T ss_pred HhCCCCCCEEECCCCCCCCCCchHHh-cCCCCCEEECcCCccc
Confidence 3457889999999888863 4 4566 6889999999999875
No 38
>KOG1947|consensus
Probab=26.90 E-value=27 Score=26.36 Aligned_cols=17 Identities=29% Similarity=0.483 Sum_probs=8.2
Q ss_pred HhhHHHhcchhhhhhhc
Q psy10771 74 IEALDKWCKHLRILLLH 90 (100)
Q Consensus 74 IE~L~~~CRnLkILYLQ 90 (100)
+..+..-|++|+.|.|.
T Consensus 287 l~~i~~~~~~L~~L~l~ 303 (482)
T KOG1947|consen 287 LVSIAERCPSLRELDLS 303 (482)
T ss_pred HHHHHHhcCcccEEeee
Confidence 33444455555555544
No 39
>KOG3870|consensus
Probab=26.83 E-value=11 Score=32.98 Aligned_cols=18 Identities=39% Similarity=0.763 Sum_probs=14.0
Q ss_pred cccchhheeeeecccccc
Q psy10771 8 YRHSELYMYRIIHPVKNR 25 (100)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~ 25 (100)
.-|+|-||||.||-.-.|
T Consensus 115 WL~aECYlYRrI~s~F~~ 132 (434)
T KOG3870|consen 115 WLHAECYLYRRISSIFQR 132 (434)
T ss_pred hhhhhHHHHHHHHHHHHh
Confidence 348999999999875443
No 40
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=26.76 E-value=18 Score=31.16 Aligned_cols=37 Identities=22% Similarity=0.302 Sum_probs=16.5
Q ss_pred ccchhhhhcchhhhh-hH-hhHHHhcchhhhhhhccCCc
Q psy10771 58 IGTLEEIALHQEHIE-KI-EALDKWCKHLRILLLHSNII 94 (100)
Q Consensus 58 L~tLEElsLHQq~IE-kI-E~L~~~CRnLkILYLQNNlI 94 (100)
+..|+.++|+.-++. .| ..+..-|++|+.|+|++|.+
T Consensus 92 l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l 130 (968)
T PLN00113 92 LPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNF 130 (968)
T ss_pred CCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCcc
Confidence 344555555544443 22 12322445555555555544
No 41
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=26.16 E-value=16 Score=31.50 Aligned_cols=36 Identities=28% Similarity=0.395 Sum_probs=18.1
Q ss_pred cchhhhhcchhhhhhH--hhHHHhcchhhhhhhccCCcc
Q psy10771 59 GTLEEIALHQEHIEKI--EALDKWCKHLRILLLHSNIIS 95 (100)
Q Consensus 59 ~tLEElsLHQq~IEkI--E~L~~~CRnLkILYLQNNlIs 95 (100)
.+|++++|+.-.+... +.++ .|++|+.|+|++|.++
T Consensus 499 ~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~Ls~N~l~ 536 (968)
T PLN00113 499 SELMQLKLSENKLSGEIPDELS-SCKKLVSLDLSHNQLS 536 (968)
T ss_pred hccCEEECcCCcceeeCChHHc-CccCCCEEECCCCccc
Confidence 3455555554444322 2333 4566666666666554
No 42
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=24.33 E-value=22 Score=31.99 Aligned_cols=16 Identities=25% Similarity=0.287 Sum_probs=8.7
Q ss_pred hcchhhhhhhccCCcc
Q psy10771 80 WCKHLRILLLHSNIIS 95 (100)
Q Consensus 80 ~CRnLkILYLQNNlIs 95 (100)
+|++|+.|+|.+|.|+
T Consensus 344 l~~sL~~L~Ls~N~L~ 359 (754)
T PRK15370 344 LPPELQVLDVSKNQIT 359 (754)
T ss_pred hcCcccEEECCCCCCC
Confidence 3455555555555554
No 43
>KOG0472|consensus
Probab=23.48 E-value=18 Score=32.63 Aligned_cols=42 Identities=24% Similarity=0.309 Sum_probs=30.2
Q ss_pred ccccchhhhhcchhhhhhHhhHHHhcchhhhhhhccCCccccc
Q psy10771 56 KEIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKLG 98 (100)
Q Consensus 56 ~~L~tLEElsLHQq~IEkIE~L~~~CRnLkILYLQNNlIskIE 98 (100)
|-+.+|+-++||+-.|-..-.+. -|.-|+-||+.+|.|+-+|
T Consensus 203 g~l~~L~~LyL~~Nki~~lPef~-gcs~L~Elh~g~N~i~~lp 244 (565)
T KOG0472|consen 203 GGLESLELLYLRRNKIRFLPEFP-GCSLLKELHVGENQIEMLP 244 (565)
T ss_pred cchhhhHHHHhhhcccccCCCCC-ccHHHHHHHhcccHHHhhH
Confidence 55677777778877777765555 6777788888887776554
No 44
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=23.26 E-value=29 Score=31.77 Aligned_cols=34 Identities=15% Similarity=0.211 Sum_probs=14.6
Q ss_pred hhhhhcchhhhhhHh-hHHHhcchhhhhhhccCCcc
Q psy10771 61 LEEIALHQEHIEKIE-ALDKWCKHLRILLLHSNIIS 95 (100)
Q Consensus 61 LEElsLHQq~IEkIE-~L~~~CRnLkILYLQNNlIs 95 (100)
|+.++|++-.|..|- .+. -|++|+.|+|++|.++
T Consensus 424 L~~L~Ls~NqLt~LP~sl~-~L~~L~~LdLs~N~Ls 458 (788)
T PRK15387 424 LLSLSVYRNQLTRLPESLI-HLSSETTVNLEGNPLS 458 (788)
T ss_pred hhhhhhccCcccccChHHh-hccCCCeEECCCCCCC
Confidence 344444444444331 222 2345555555555443
No 45
>KOG0618|consensus
Probab=22.45 E-value=48 Score=32.13 Aligned_cols=39 Identities=23% Similarity=0.258 Sum_probs=33.8
Q ss_pred ccchhhhhcchhhhhhHhhHHHhcchhhhhhhccCCccc
Q psy10771 58 IGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISK 96 (100)
Q Consensus 58 L~tLEElsLHQq~IEkIE~L~~~CRnLkILYLQNNlIsk 96 (100)
+..|||+.||--.+..|-+=-..|+.|+.|+..+|+|..
T Consensus 406 le~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~ 444 (1081)
T KOG0618|consen 406 LEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLS 444 (1081)
T ss_pred hHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceee
Confidence 457999999999999997645589999999999999875
No 46
>PF13656 RNA_pol_L_2: RNA polymerase Rpb3/Rpb11 dimerisation domain; PDB: 2Y0S_L 1I3Q_K 4A3D_K 2JA8_K 3GTP_K 1R9T_K 3PO2_K 4A3J_K 3HOX_K 2JA7_K ....
Probab=22.35 E-value=75 Score=20.70 Aligned_cols=23 Identities=35% Similarity=0.541 Sum_probs=18.8
Q ss_pred hhheeeeecccccceeeeeeecc
Q psy10771 12 ELYMYRIIHPVKNRIISFVKLKK 34 (100)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~ 34 (100)
+.-.|++-||..+.+.=.|+.+.
T Consensus 29 ~fagY~vpHPl~~~i~l~Iqt~~ 51 (77)
T PF13656_consen 29 EFAGYRVPHPLENKINLRIQTKG 51 (77)
T ss_dssp EEEEEEESETTSSEEEEEEEEST
T ss_pred EEEEeccCCCCCCceEEEEEECC
Confidence 45679999999999987777763
No 47
>PF09495 DUF2462: Protein of unknown function (DUF2462); InterPro: IPR019034 This protein family is highly conserved, but its function is unknown. It can be isolated from HeLa cell nucleoli and contains the Leydig cell tumor 10 kDa protein homologs [].
Probab=21.86 E-value=19 Score=24.18 Aligned_cols=37 Identities=32% Similarity=0.340 Sum_probs=31.1
Q ss_pred eeecccccceeeeeeecc-ceehhhHHhHHHHHhhccc
Q psy10771 17 RIIHPVKNRIISFVKLKK-LSLFWTTVSEDLVRKRAEH 53 (100)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~-~~~~MvrIT~eLIRKraEH 53 (100)
|+|-|-|.+++.--++++ |+-.+..=||.+++-||..
T Consensus 32 r~i~PKK~~~v~~~klkK~lt~~i~~~~E~~l~~rAs~ 69 (82)
T PF09495_consen 32 RVIAPKKAKAVKQQKLKKKLTKGINKKIEKELASRASS 69 (82)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 678888888888778876 8888888999999999854
No 48
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=21.81 E-value=17 Score=22.93 Aligned_cols=12 Identities=25% Similarity=0.468 Sum_probs=4.5
Q ss_pred hcchhhhhhhcc
Q psy10771 80 WCKHLRILLLHS 91 (100)
Q Consensus 80 ~CRnLkILYLQN 91 (100)
-|.+|+.+.+.+
T Consensus 56 ~~~~l~~i~~~~ 67 (129)
T PF13306_consen 56 NCKSLESITFPN 67 (129)
T ss_dssp T-TT-EEEEETS
T ss_pred cccccccccccc
Confidence 344444444443
No 49
>COG2827 Predicted endonuclease containing a URI domain [DNA replication, recombination, and repair]
Probab=21.57 E-value=22 Score=25.11 Aligned_cols=24 Identities=38% Similarity=0.483 Sum_probs=19.3
Q ss_pred hhHHhHHHHHhhcccccccccchh
Q psy10771 39 WTTVSEDLVRKRAEHNDKEIGTLE 62 (100)
Q Consensus 39 MvrIT~eLIRKraEHNe~~L~tLE 62 (100)
-.-+|.|+.||=+|||+|.-..-+
T Consensus 18 Y~GvT~D~~rR~~~H~~GkgakyT 41 (95)
T COG2827 18 YTGVTTDLERRLAEHNSGKGAKYT 41 (95)
T ss_pred EEEecCCHHHHHHHHhcccccchh
Confidence 456899999999999999865543
No 50
>PF08519 RFC1: Replication factor RFC1 C terminal domain; InterPro: IPR013725 This is the C-terminal domain of replication factor C, RFC1. RFC complexes hydrolyse ATP and load sliding clamps such as PCNA (proliferating cell nuclear antigen) onto double-stranded DNA. RFC1 is essential for RFC function in vivo [, ]. ; GO: 0003689 DNA clamp loader activity, 0005524 ATP binding, 0006260 DNA replication, 0005663 DNA replication factor C complex; PDB: 1SXJ_A.
Probab=21.21 E-value=32 Score=25.16 Aligned_cols=52 Identities=27% Similarity=0.487 Sum_probs=0.0
Q ss_pred eeeccceehhhHHhHHHHHhhcccccccccchhhhhcchhhhhhHhhHHHhc
Q psy10771 30 VKLKKLSLFWTTVSEDLVRKRAEHNDKEIGTLEEIALHQEHIEKIEALDKWC 81 (100)
Q Consensus 30 ~~~~~~~~~MvrIT~eLIRKraEHNe~~L~tLEElsLHQq~IEkIE~L~~~C 81 (100)
|.+.-+.+..-++|..|+.+-++-=+..+..+.+-.|..+|.|.|-.|..|-
T Consensus 81 v~~~Ylp~L~~~l~~pL~~~~~~~v~~vi~~Md~Y~Ltred~d~i~el~~~~ 132 (155)
T PF08519_consen 81 VRLDYLPLLRQKLTQPLIEQGKDGVDEVIDLMDEYGLTREDWDNIMELSKWP 132 (155)
T ss_dssp ----------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHhCCCHHHHHHHHHhccCC
Confidence 4556677778889999998888888999999999999999999998777443
No 51
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=20.49 E-value=45 Score=28.90 Aligned_cols=38 Identities=24% Similarity=0.286 Sum_probs=25.3
Q ss_pred hhhhhcch-----hhhhhHhhHHHhcchhhhhhhccCCccccc
Q psy10771 61 LEEIALHQ-----EHIEKIEALDKWCKHLRILLLHSNIISKLG 98 (100)
Q Consensus 61 LEElsLHQ-----q~IEkIE~L~~~CRnLkILYLQNNlIskIE 98 (100)
|+-+.||+ +-+|-++++-.---+|+||||.||-...+-
T Consensus 94 l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~a 136 (388)
T COG5238 94 LQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIA 136 (388)
T ss_pred ceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccc
Confidence 44455443 445555554336788999999999887653
Done!