Query psy10771
Match_columns 100
No_of_seqs 81 out of 83
Neff 2.3
Searched_HMMs 29240
Date Fri Aug 16 18:06:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10771.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10771hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1a9n_A U2A', U2A'; complex (nu 97.9 7.6E-07 2.6E-11 58.9 -1.3 57 39-97 1-57 (176)
2 2je0_A Acidic leucine-rich nuc 92.9 0.016 5.3E-07 36.6 -0.3 38 58-96 87-127 (149)
3 3rw6_A Nuclear RNA export fact 92.8 0.015 5.1E-07 43.7 -0.7 41 58-98 169-212 (267)
4 2ell_A Acidic leucine-rich nuc 92.7 0.015 5.2E-07 37.4 -0.7 40 58-97 70-110 (168)
5 4ezg_A Putative uncharacterize 92.3 0.014 4.7E-07 38.9 -1.3 39 58-97 135-174 (197)
6 1xeu_A Internalin C; cellular 91.9 0.018 6.1E-07 40.7 -1.1 42 56-98 60-101 (263)
7 2je0_A Acidic leucine-rich nuc 91.8 0.026 8.9E-07 35.6 -0.4 63 28-97 40-103 (149)
8 4ezg_A Putative uncharacterize 91.7 0.024 8.2E-07 37.7 -0.6 37 58-95 158-194 (197)
9 4fmz_A Internalin; leucine ric 91.5 0.02 6.9E-07 40.4 -1.2 39 57-96 42-80 (347)
10 1xeu_A Internalin C; cellular 91.5 0.028 9.4E-07 39.7 -0.5 40 57-97 126-165 (263)
11 1h6t_A Internalin B; cell adhe 91.2 0.021 7.2E-07 40.8 -1.4 38 58-96 45-82 (291)
12 3rfs_A Internalin B, repeat mo 90.8 0.031 1.1E-06 39.0 -0.8 38 58-96 84-123 (272)
13 1h6t_A Internalin B; cell adhe 90.7 0.035 1.2E-06 39.6 -0.6 35 59-94 112-146 (291)
14 3rfs_A Internalin B, repeat mo 90.4 0.03 1E-06 39.0 -1.1 40 57-97 61-100 (272)
15 1a9n_A U2A', U2A'; complex (nu 90.3 0.043 1.5E-06 35.8 -0.4 40 57-97 86-128 (176)
16 1ds9_A Outer arm dynein; leuci 90.1 0.018 6E-07 38.4 -2.5 39 58-96 69-107 (198)
17 1h6u_A Internalin H; cell adhe 89.7 0.034 1.2E-06 39.9 -1.4 39 58-97 62-100 (308)
18 2wfh_A SLIT homolog 2 protein 89.5 0.052 1.8E-06 36.7 -0.5 42 56-98 51-94 (193)
19 4fmz_A Internalin; leucine ric 89.4 0.046 1.6E-06 38.5 -0.9 40 57-97 86-125 (347)
20 3sb4_A Hypothetical leucine ri 89.1 0.048 1.6E-06 39.1 -1.0 40 58-99 100-141 (329)
21 3e6j_A Variable lymphocyte rec 89.1 0.039 1.3E-06 37.9 -1.4 39 58-97 87-127 (229)
22 4g8a_A TOLL-like receptor 4; l 88.7 0.042 1.4E-06 40.8 -1.6 40 57-97 74-115 (635)
23 4g8a_A TOLL-like receptor 4; l 88.5 0.037 1.3E-06 41.1 -1.9 42 57-99 98-141 (635)
24 2ra8_A Uncharacterized protein 88.4 0.064 2.2E-06 41.0 -0.8 66 28-95 250-320 (362)
25 2v9t_B SLIT homolog 2 protein 88.2 0.047 1.6E-06 37.4 -1.5 41 57-97 78-119 (220)
26 1ds9_A Outer arm dynein; leuci 88.0 0.023 7.8E-07 37.9 -3.1 40 57-97 91-130 (198)
27 1h6u_A Internalin H; cell adhe 88.0 0.066 2.3E-06 38.4 -0.9 37 58-95 106-142 (308)
28 2ell_A Acidic leucine-rich nuc 88.0 0.04 1.4E-06 35.3 -1.8 38 58-96 48-85 (168)
29 2wfh_A SLIT homolog 2 protein 87.5 0.058 2E-06 36.5 -1.4 42 56-98 75-118 (193)
30 2ifg_A High affinity nerve gro 87.3 0.065 2.2E-06 38.1 -1.3 41 57-98 54-96 (347)
31 3g39_A Variable lymphocyte rec 87.2 0.056 1.9E-06 35.7 -1.6 36 58-94 77-114 (170)
32 1w8a_A SLIT protein; signaling 86.9 0.063 2.1E-06 35.9 -1.4 38 58-96 77-116 (192)
33 2v70_A SLIT-2, SLIT homolog 2 86.5 0.066 2.3E-06 36.6 -1.5 40 57-97 79-120 (220)
34 2r9u_A Variable lymphocyte rec 86.5 0.072 2.5E-06 35.6 -1.3 42 57-98 55-97 (174)
35 2r9u_A Variable lymphocyte rec 86.2 0.066 2.3E-06 35.7 -1.6 40 56-96 78-119 (174)
36 1m9s_A Internalin B; cell inva 86.1 0.11 3.8E-06 42.1 -0.6 37 58-95 108-144 (605)
37 2o6s_A Variable lymphocyte rec 85.9 0.07 2.4E-06 35.3 -1.6 38 58-96 99-138 (208)
38 2o6s_A Variable lymphocyte rec 85.9 0.071 2.4E-06 35.3 -1.6 40 57-97 74-115 (208)
39 1m9s_A Internalin B; cell inva 85.9 0.1 3.5E-06 42.3 -0.9 38 58-96 64-101 (605)
40 2ca6_A RAN GTPase-activating p 85.7 0.15 5.1E-06 36.9 -0.0 15 80-94 242-256 (386)
41 3g39_A Variable lymphocyte rec 85.6 0.082 2.8E-06 34.9 -1.4 42 57-98 52-94 (170)
42 2o6r_A Variable lymphocyte rec 85.3 0.078 2.7E-06 34.4 -1.6 40 57-97 74-115 (177)
43 2ifg_A High affinity nerve gro 85.3 0.064 2.2E-06 38.1 -2.1 41 57-98 29-72 (347)
44 2v9t_B SLIT homolog 2 protein 84.9 0.087 3E-06 36.1 -1.6 41 57-98 102-144 (220)
45 3bz5_A Internalin-J, INLJ; leu 84.7 0.1 3.4E-06 40.1 -1.4 37 58-95 41-77 (457)
46 2v70_A SLIT-2, SLIT homolog 2 84.7 0.099 3.4E-06 35.8 -1.3 40 57-97 103-144 (220)
47 2z80_A TOLL-like receptor 2, v 84.4 0.094 3.2E-06 37.5 -1.6 39 58-97 75-115 (353)
48 3e6j_A Variable lymphocyte rec 84.2 0.12 4E-06 35.5 -1.2 42 56-98 109-151 (229)
49 3m19_A Variable lymphocyte rec 84.2 0.1 3.4E-06 35.8 -1.5 41 57-98 81-123 (251)
50 4glp_A Monocyte differentiatio 84.1 0.23 8E-06 35.0 0.3 41 57-97 195-239 (310)
51 3zyj_A Leucine-rich repeat-con 83.8 0.086 2.9E-06 39.1 -2.1 36 59-95 185-220 (440)
52 2xwt_C Thyrotropin receptor; s 83.7 0.058 2E-06 36.5 -2.8 38 58-96 79-119 (239)
53 1o6v_A Internalin A; bacterial 83.6 0.12 4E-06 38.7 -1.5 39 57-96 66-104 (466)
54 2xot_A Amphoterin-induced prot 83.5 0.1 3.5E-06 38.1 -1.8 39 58-97 87-127 (361)
55 1o6v_A Internalin A; bacterial 83.3 0.15 5.3E-06 38.1 -0.9 38 58-96 89-126 (466)
56 2o6q_A Variable lymphocyte rec 83.1 0.12 4.1E-06 35.8 -1.5 15 81-95 156-170 (270)
57 3m19_A Variable lymphocyte rec 83.1 0.11 3.9E-06 35.5 -1.6 36 59-95 131-168 (251)
58 2xot_A Amphoterin-induced prot 82.9 0.11 3.6E-06 38.0 -1.9 40 57-97 110-151 (361)
59 1dce_A Protein (RAB geranylger 82.9 0.16 5.6E-06 40.6 -1.0 7 61-67 465-471 (567)
60 2o6r_A Variable lymphocyte rec 82.8 0.12 3.9E-06 33.6 -1.6 38 58-95 99-137 (177)
61 2ft3_A Biglycan; proteoglycan, 82.7 0.13 4.5E-06 36.4 -1.4 39 58-97 77-117 (332)
62 3zyi_A Leucine-rich repeat-con 82.4 0.11 3.9E-06 38.6 -1.9 38 59-97 218-257 (452)
63 3sb4_A Hypothetical leucine ri 82.2 0.14 4.7E-06 36.7 -1.5 41 58-99 272-314 (329)
64 2z62_A TOLL-like receptor 4, v 82.1 0.12 4.2E-06 35.5 -1.7 39 58-97 75-115 (276)
65 1p9a_G Platelet glycoprotein I 81.9 0.12 4.3E-06 36.8 -1.8 38 58-96 99-138 (290)
66 1p9a_G Platelet glycoprotein I 81.8 0.14 4.8E-06 36.5 -1.5 42 56-97 74-115 (290)
67 2z62_A TOLL-like receptor 4, v 81.7 0.14 5E-06 35.1 -1.5 39 58-97 123-164 (276)
68 2ast_B S-phase kinase-associat 81.5 0.33 1.1E-05 33.8 0.3 35 58-92 141-178 (336)
69 3v47_A TOLL-like receptor 5B a 81.2 0.16 5.3E-06 37.0 -1.5 38 58-96 322-361 (455)
70 2z80_A TOLL-like receptor 2, v 81.2 0.2 6.9E-06 35.8 -0.9 39 58-97 99-139 (353)
71 1xku_A Decorin; proteoglycan, 81.0 0.17 5.7E-06 35.7 -1.4 39 58-97 75-115 (330)
72 3o6n_A APL1; leucine-rich repe 80.8 0.26 8.8E-06 35.6 -0.5 40 57-97 293-333 (390)
73 4glp_A Monocyte differentiatio 80.6 0.14 4.9E-06 36.1 -1.9 37 59-97 251-287 (310)
74 3zyj_A Leucine-rich repeat-con 80.5 0.19 6.7E-06 37.2 -1.2 39 58-97 111-151 (440)
75 2id5_A Lingo-1, leucine rich r 80.5 0.18 6.1E-06 37.3 -1.4 39 58-97 79-119 (477)
76 1wwl_A Monocyte differentiatio 80.3 0.12 4.1E-06 36.7 -2.3 38 58-97 252-289 (312)
77 1ozn_A Reticulon 4 receptor; N 80.2 0.15 5.2E-06 35.2 -1.8 36 59-95 129-166 (285)
78 2z63_A TOLL-like receptor 4, v 80.1 0.19 6.6E-06 37.4 -1.4 14 81-94 148-161 (570)
79 3o53_A Protein LRIM1, AGAP0063 80.0 0.092 3.2E-06 37.4 -3.0 39 57-96 32-72 (317)
80 1dce_A Protein (RAB geranylger 79.9 0.28 9.6E-06 39.3 -0.6 38 58-96 485-522 (567)
81 3o53_A Protein LRIM1, AGAP0063 79.6 0.21 7.1E-06 35.5 -1.3 39 58-97 190-229 (317)
82 2ft3_A Biglycan; proteoglycan, 79.6 0.24 8.3E-06 35.1 -1.0 39 58-97 240-279 (332)
83 2z7x_B TOLL-like receptor 1, v 79.4 0.16 5.3E-06 38.0 -2.1 37 58-95 89-128 (520)
84 2p1m_B Transport inhibitor res 79.3 0.2 6.9E-06 37.5 -1.5 62 30-95 105-169 (594)
85 2z7x_B TOLL-like receptor 1, v 79.2 0.22 7.6E-06 37.1 -1.3 37 58-96 68-104 (520)
86 4b8c_D Glucose-repressible alc 79.0 0.28 9.5E-06 40.3 -0.9 38 58-96 269-307 (727)
87 2o6q_A Variable lymphocyte rec 78.6 0.2 7E-06 34.6 -1.6 40 57-97 155-196 (270)
88 3zyi_A Leucine-rich repeat-con 78.1 0.23 7.8E-06 37.0 -1.5 37 60-97 76-114 (452)
89 2z66_A Variable lymphocyte rec 78.0 0.25 8.4E-06 34.4 -1.3 13 82-94 223-235 (306)
90 1w8a_A SLIT protein; signaling 78.0 0.23 8E-06 33.1 -1.4 42 56-98 51-94 (192)
91 1xku_A Decorin; proteoglycan, 77.8 0.23 8E-06 35.0 -1.5 38 59-97 240-278 (330)
92 2ast_B S-phase kinase-associat 77.4 0.4 1.4E-05 33.4 -0.4 63 28-95 91-156 (336)
93 3vq2_A TLR4, TOLL-like recepto 77.2 0.25 8.7E-06 37.4 -1.5 40 57-97 78-119 (606)
94 3o6n_A APL1; leucine-rich repe 76.7 0.36 1.2E-05 34.8 -0.8 39 58-97 247-287 (390)
95 1ozn_A Reticulon 4 receptor; N 76.7 0.21 7.3E-06 34.4 -1.9 39 58-97 152-192 (285)
96 2p1m_B Transport inhibitor res 76.5 0.44 1.5E-05 35.7 -0.4 37 58-94 455-493 (594)
97 2xwt_C Thyrotropin receptor; s 76.4 0.17 5.7E-06 34.2 -2.5 35 63-98 134-172 (239)
98 3bz5_A Internalin-J, INLJ; leu 75.9 0.29 1E-05 37.5 -1.5 39 57-97 83-121 (457)
99 3t6q_A CD180 antigen; protein- 75.7 0.32 1.1E-05 36.9 -1.3 38 58-96 104-143 (606)
100 2z81_A CD282 antigen, TOLL-lik 75.6 0.33 1.1E-05 36.2 -1.2 40 57-97 449-488 (549)
101 3v47_A TOLL-like receptor 5B a 75.6 0.41 1.4E-05 34.8 -0.7 38 58-96 128-168 (455)
102 1z7x_W Ribonuclease inhibitor; 75.2 0.46 1.6E-05 34.5 -0.6 14 81-94 283-296 (461)
103 1z7x_W Ribonuclease inhibitor; 74.9 0.55 1.9E-05 34.1 -0.2 38 58-96 369-412 (461)
104 1ziw_A TOLL-like receptor 3; i 74.6 0.32 1.1E-05 37.6 -1.6 38 58-96 72-111 (680)
105 3vq2_A TLR4, TOLL-like recepto 74.6 0.32 1.1E-05 36.9 -1.6 40 57-97 54-95 (606)
106 2z81_A CD282 antigen, TOLL-lik 74.5 0.57 1.9E-05 34.9 -0.2 40 57-97 359-402 (549)
107 3a79_B TLR6, VLRB.59, TOLL-lik 74.4 0.34 1.1E-05 37.0 -1.5 35 59-95 100-134 (562)
108 1io0_A Tropomodulin; LRR prote 74.3 0.51 1.7E-05 31.8 -0.5 16 80-95 91-106 (185)
109 3a79_B TLR6, VLRB.59, TOLL-lik 74.2 0.31 1.1E-05 37.2 -1.8 39 57-96 119-160 (562)
110 3goz_A Leucine-rich repeat-con 74.2 0.85 2.9E-05 33.0 0.6 37 60-96 197-239 (362)
111 1wwl_A Monocyte differentiatio 74.2 0.63 2.2E-05 32.9 -0.0 41 56-96 198-242 (312)
112 3un9_A NLR family member X1; l 73.7 0.51 1.7E-05 35.6 -0.7 35 60-94 102-138 (372)
113 2id5_A Lingo-1, leucine rich r 73.6 0.35 1.2E-05 35.7 -1.5 41 57-98 54-96 (477)
114 4fcg_A Uncharacterized protein 73.1 0.36 1.2E-05 34.9 -1.6 37 58-95 103-140 (328)
115 2ca6_A RAN GTPase-activating p 72.9 0.77 2.6E-05 33.2 0.2 15 81-95 302-316 (386)
116 3t6q_A CD180 antigen; protein- 72.4 0.38 1.3E-05 36.5 -1.7 40 57-97 79-120 (606)
117 2z63_A TOLL-like receptor 4, v 72.3 0.44 1.5E-05 35.5 -1.3 37 58-95 99-137 (570)
118 4b8c_D Glucose-repressible alc 72.0 0.67 2.3E-05 38.0 -0.4 40 57-97 245-285 (727)
119 1ziw_A TOLL-like receptor 3; i 71.8 0.43 1.5E-05 36.9 -1.5 39 58-97 535-575 (680)
120 2z66_A Variable lymphocyte rec 71.4 0.38 1.3E-05 33.4 -1.7 40 57-97 50-93 (306)
121 4ay9_X Follicle-stimulating ho 70.9 0.36 1.2E-05 34.9 -2.0 36 59-95 30-67 (350)
122 3oja_A Leucine-rich immune mol 70.7 0.61 2.1E-05 35.9 -0.9 39 58-96 143-183 (487)
123 3goz_A Leucine-rich repeat-con 70.6 1.3 4.4E-05 32.0 0.9 14 82-95 109-122 (362)
124 4fcg_A Uncharacterized protein 70.0 0.49 1.7E-05 34.2 -1.4 38 58-96 182-220 (328)
125 3rw6_A Nuclear RNA export fact 69.6 0.77 2.6E-05 34.3 -0.5 40 57-96 194-234 (267)
126 3g06_A SSPH2 (leucine-rich rep 67.9 0.57 2E-05 38.3 -1.6 15 81-95 240-254 (622)
127 3oja_A Leucine-rich immune mol 67.8 0.39 1.3E-05 37.0 -2.5 38 58-96 190-228 (487)
128 3ogk_B Coronatine-insensitive 67.0 1.4 4.9E-05 33.0 0.5 37 59-95 192-233 (592)
129 1jl5_A Outer protein YOPM; leu 66.1 0.64 2.2E-05 35.5 -1.6 39 58-97 172-210 (454)
130 3cvr_A Invasion plasmid antige 65.8 0.72 2.5E-05 37.5 -1.4 33 60-95 81-113 (571)
131 1jl5_A Outer protein YOPM; leu 65.6 0.61 2.1E-05 35.7 -1.8 38 59-97 131-168 (454)
132 3un9_A NLR family member X1; l 64.6 0.97 3.3E-05 34.0 -0.8 13 82-94 211-223 (372)
133 1io0_A Tropomodulin; LRR prote 64.5 1.9 6.6E-05 28.9 0.7 16 80-95 119-136 (185)
134 3oja_B Anopheles plasmodium-re 62.8 0.55 1.9E-05 36.6 -2.5 36 59-95 301-337 (597)
135 3g06_A SSPH2 (leucine-rich rep 61.9 0.93 3.2E-05 37.1 -1.4 38 57-97 239-276 (622)
136 3oja_B Anopheles plasmodium-re 61.9 1.3 4.6E-05 34.4 -0.5 42 56-97 275-316 (597)
137 1ogq_A PGIP-2, polygalacturona 61.2 0.84 2.9E-05 32.5 -1.6 36 59-95 244-281 (313)
138 3rfe_A Platelet glycoprotein I 59.1 2.3 7.7E-05 27.9 0.3 17 82-98 31-47 (130)
139 4eco_A Uncharacterized protein 58.9 1.4 4.8E-05 34.9 -0.9 39 59-97 433-472 (636)
140 3j0a_A TOLL-like receptor 5; m 58.6 1.6 5.4E-05 35.7 -0.7 41 57-98 478-520 (844)
141 3ogk_B Coronatine-insensitive 58.5 2.2 7.5E-05 32.0 0.2 15 79-93 290-304 (592)
142 1ogq_A PGIP-2, polygalacturona 58.4 1.2 4E-05 31.8 -1.3 37 58-95 124-162 (313)
143 4eco_A Uncharacterized protein 57.0 1.3 4.5E-05 35.1 -1.3 37 60-96 489-527 (636)
144 3j0a_A TOLL-like receptor 5; m 56.7 1.5 5.1E-05 35.8 -1.1 39 57-96 121-162 (844)
145 4ecn_A Leucine-rich repeat pro 52.7 1.3 4.3E-05 38.2 -2.2 39 58-97 547-588 (876)
146 3e4g_A ATP synthase subunit S, 51.9 2.1 7.2E-05 30.6 -0.9 60 31-95 62-128 (176)
147 2ra8_A Uncharacterized protein 50.6 2.4 8.2E-05 32.3 -0.8 64 29-95 192-265 (362)
148 4ecn_A Leucine-rich repeat pro 48.5 2.8 9.5E-05 36.0 -0.8 38 60-97 674-712 (876)
149 3rgz_A Protein brassinosteroid 48.1 2.6 9E-05 33.9 -0.9 39 56-95 97-139 (768)
150 4fdw_A Leucine rich hypothetic 43.5 2.7 9.2E-05 32.0 -1.5 39 60-99 158-197 (401)
151 3rgz_A Protein brassinosteroid 42.5 2.2 7.5E-05 34.4 -2.2 15 58-72 150-164 (768)
152 4ayb_F DNA-directed RNA polyme 30.3 14 0.00049 24.7 0.6 26 57-82 86-112 (113)
153 1gmj_A ATPase inhibitor; coile 24.3 30 0.001 23.1 1.4 27 61-87 50-77 (84)
154 4fs7_A Uncharacterized protein 20.9 11 0.00038 27.5 -1.4 37 59-98 320-358 (394)
No 1
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=97.91 E-value=7.6e-07 Score=58.86 Aligned_cols=57 Identities=21% Similarity=0.236 Sum_probs=47.2
Q ss_pred hhHHhHHHHHhhcccccccccchhhhhcchhhhhhHhhHHHhcchhhhhhhccCCcccc
Q psy10771 39 WTTVSEDLVRKRAEHNDKEIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL 97 (100)
Q Consensus 39 MvrIT~eLIRKraEHNe~~L~tLEElsLHQq~IEkIE~L~~~CRnLkILYLQNNlIskI 97 (100)
|+++|.++|++.+..- -..+|++++|+.-.|..|+.+...+++|+.|+|++|.|+.+
T Consensus 1 m~~lt~~~i~~~~~~~--~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~ 57 (176)
T 1a9n_A 1 MVKLTAELIEQAAQYT--NAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL 57 (176)
T ss_dssp -CCCCHHHHHTSCEEE--CTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE
T ss_pred CccccHHHHHHHHhcC--CcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc
Confidence 8999999999876543 36789999999999998888887777999999999988765
No 2
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=92.92 E-value=0.016 Score=36.60 Aligned_cols=38 Identities=18% Similarity=0.268 Sum_probs=17.8
Q ss_pred ccchhhhhcchhhhhhHh---hHHHhcchhhhhhhccCCccc
Q psy10771 58 IGTLEEIALHQEHIEKIE---ALDKWCKHLRILLLHSNIISK 96 (100)
Q Consensus 58 L~tLEElsLHQq~IEkIE---~L~~~CRnLkILYLQNNlIsk 96 (100)
+.+|++++|+.-.|..+. .++ .|++|+.|+|.+|.|+.
T Consensus 87 l~~L~~L~ls~N~i~~~~~~~~~~-~l~~L~~L~l~~N~l~~ 127 (149)
T 2je0_A 87 CPNLTHLNLSGNKIKDLSTIEPLK-KLENLKSLDLFNCEVTN 127 (149)
T ss_dssp CTTCCEEECTTSCCCSHHHHGGGG-GCTTCCEEECTTCGGGG
T ss_pred CCCCCEEECCCCcCCChHHHHHHh-hCCCCCEEeCcCCcccc
Confidence 344555555554444432 222 34555555555555443
No 3
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=92.78 E-value=0.015 Score=43.71 Aligned_cols=41 Identities=20% Similarity=0.317 Sum_probs=31.9
Q ss_pred ccchhhhhcchhhhhhHhhHH---HhcchhhhhhhccCCccccc
Q psy10771 58 IGTLEEIALHQEHIEKIEALD---KWCKHLRILLLHSNIISKLG 98 (100)
Q Consensus 58 L~tLEElsLHQq~IEkIE~L~---~~CRnLkILYLQNNlIskIE 98 (100)
+.+|++|+|+.-.|..|+.+. ..|++|+.|+|++|.|+.++
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~ 212 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER 212 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch
Confidence 557888888888888776443 47889999999999888663
No 4
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=92.68 E-value=0.015 Score=37.36 Aligned_cols=40 Identities=20% Similarity=0.306 Sum_probs=22.7
Q ss_pred ccchhhhhcchhhhhh-HhhHHHhcchhhhhhhccCCcccc
Q psy10771 58 IGTLEEIALHQEHIEK-IEALDKWCKHLRILLLHSNIISKL 97 (100)
Q Consensus 58 L~tLEElsLHQq~IEk-IE~L~~~CRnLkILYLQNNlIskI 97 (100)
+.+|++++|+.-.|.. +..+...|++|+.|+|++|.|+.+
T Consensus 70 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 110 (168)
T 2ell_A 70 LPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDI 110 (168)
T ss_dssp CSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSS
T ss_pred CCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcc
Confidence 4556666666655555 444443466666666666665543
No 5
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=92.30 E-value=0.014 Score=38.93 Aligned_cols=39 Identities=18% Similarity=0.204 Sum_probs=22.6
Q ss_pred ccchhhhhcchhh-hhhHhhHHHhcchhhhhhhccCCcccc
Q psy10771 58 IGTLEEIALHQEH-IEKIEALDKWCKHLRILLLHSNIISKL 97 (100)
Q Consensus 58 L~tLEElsLHQq~-IEkIE~L~~~CRnLkILYLQNNlIskI 97 (100)
+.+|++++|+.-. |..+..++ -|++|+.|+|++|.|+.+
T Consensus 135 l~~L~~L~L~~n~~i~~~~~l~-~l~~L~~L~l~~n~i~~~ 174 (197)
T 4ezg_A 135 LPKVNSIDLSYNGAITDIMPLK-TLPELKSLNIQFDGVHDY 174 (197)
T ss_dssp CSSCCEEECCSCTBCCCCGGGG-GCSSCCEEECTTBCCCCC
T ss_pred CCCCCEEEccCCCCccccHhhc-CCCCCCEEECCCCCCcCh
Confidence 4556666666554 55555554 456666666666665543
No 6
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=91.92 E-value=0.018 Score=40.69 Aligned_cols=42 Identities=21% Similarity=0.305 Sum_probs=28.4
Q ss_pred ccccchhhhhcchhhhhhHhhHHHhcchhhhhhhccCCccccc
Q psy10771 56 KEIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKLG 98 (100)
Q Consensus 56 ~~L~tLEElsLHQq~IEkIE~L~~~CRnLkILYLQNNlIskIE 98 (100)
+.+.+|++++|+.-.|..+..++ .|++|+.|+|.+|.|+.+.
T Consensus 60 ~~l~~L~~L~L~~N~i~~~~~l~-~l~~L~~L~L~~N~l~~l~ 101 (263)
T 1xeu_A 60 QFFTNLKELHLSHNQISDLSPLK-DLTKLEELSVNRNRLKNLN 101 (263)
T ss_dssp GGCTTCCEEECCSSCCCCCGGGT-TCSSCCEEECCSSCCSCCT
T ss_pred hhCCCCCEEECCCCccCCChhhc-cCCCCCEEECCCCccCCcC
Confidence 34566777777777777666655 6677777777777776553
No 7
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=91.77 E-value=0.026 Score=35.56 Aligned_cols=63 Identities=25% Similarity=0.355 Sum_probs=45.4
Q ss_pred eeeeeccceehhhHHhHHHHHhhcccccccccchhhhhcchhhhhh-HhhHHHhcchhhhhhhccCCcccc
Q psy10771 28 SFVKLKKLSLFWTTVSEDLVRKRAEHNDKEIGTLEEIALHQEHIEK-IEALDKWCKHLRILLLHSNIISKL 97 (100)
Q Consensus 28 ~~~~~~~~~~~MvrIT~eLIRKraEHNe~~L~tLEElsLHQq~IEk-IE~L~~~CRnLkILYLQNNlIskI 97 (100)
.+-.|+.|.+---.++.- ..-+.+.+|+.++|+.-.|.. +...-..|++|+.|+|++|.|+.+
T Consensus 40 ~l~~L~~L~l~~n~l~~~-------~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~ 103 (149)
T 2je0_A 40 EFEELEFLSTINVGLTSI-------ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDL 103 (149)
T ss_dssp TCTTCCEEECTTSCCCCC-------TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSH
T ss_pred hcCCCcEEECcCCCCCCc-------hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCCh
Confidence 344566666554444432 223457889999999999988 776665799999999999998764
No 8
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=91.68 E-value=0.024 Score=37.72 Aligned_cols=37 Identities=14% Similarity=0.247 Sum_probs=17.0
Q ss_pred ccchhhhhcchhhhhhHhhHHHhcchhhhhhhccCCcc
Q psy10771 58 IGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIIS 95 (100)
Q Consensus 58 L~tLEElsLHQq~IEkIE~L~~~CRnLkILYLQNNlIs 95 (100)
+.+|++++|+.-.|..+..+. .|++|+.|+|.+|.|+
T Consensus 158 l~~L~~L~l~~n~i~~~~~l~-~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 158 LPELKSLNIQFDGVHDYRGIE-DFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CSSCCEEECTTBCCCCCTTGG-GCSSCCEEEECBC---
T ss_pred CCCCCEEECCCCCCcChHHhc-cCCCCCEEEeeCcccC
Confidence 344555555554444444444 4455555555555554
No 9
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=91.52 E-value=0.02 Score=40.36 Aligned_cols=39 Identities=21% Similarity=0.472 Sum_probs=18.7
Q ss_pred cccchhhhhcchhhhhhHhhHHHhcchhhhhhhccCCccc
Q psy10771 57 EIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISK 96 (100)
Q Consensus 57 ~L~tLEElsLHQq~IEkIE~L~~~CRnLkILYLQNNlIsk 96 (100)
.+.+|++++++...|..++.++ .|++|+.|+|++|.|+.
T Consensus 42 ~l~~L~~L~l~~~~i~~~~~~~-~~~~L~~L~l~~n~i~~ 80 (347)
T 4fmz_A 42 ELESITKLVVAGEKVASIQGIE-YLTNLEYLNLNGNQITD 80 (347)
T ss_dssp HHTTCSEEECCSSCCCCCTTGG-GCTTCCEEECCSSCCCC
T ss_pred hcccccEEEEeCCccccchhhh-hcCCccEEEccCCcccc
Confidence 3444455555554444444444 44555555555554443
No 10
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=91.50 E-value=0.028 Score=39.71 Aligned_cols=40 Identities=25% Similarity=0.446 Sum_probs=22.6
Q ss_pred cccchhhhhcchhhhhhHhhHHHhcchhhhhhhccCCcccc
Q psy10771 57 EIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL 97 (100)
Q Consensus 57 ~L~tLEElsLHQq~IEkIE~L~~~CRnLkILYLQNNlIskI 97 (100)
.+.+|++++|+.-.|..+..++ .|++|+.|+|.+|.|+.+
T Consensus 126 ~l~~L~~L~Ls~N~i~~~~~l~-~l~~L~~L~L~~N~i~~~ 165 (263)
T 1xeu_A 126 HLKNLEILSIRNNKLKSIVMLG-FLSKLEVLDLHGNEITNT 165 (263)
T ss_dssp TCTTCCEEECTTSCCCBCGGGG-GCTTCCEEECTTSCCCBC
T ss_pred CcccccEEECCCCcCCCChHHc-cCCCCCEEECCCCcCcch
Confidence 3455566666655555555444 456666666666665543
No 11
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=91.24 E-value=0.021 Score=40.77 Aligned_cols=38 Identities=13% Similarity=0.453 Sum_probs=20.1
Q ss_pred ccchhhhhcchhhhhhHhhHHHhcchhhhhhhccCCccc
Q psy10771 58 IGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISK 96 (100)
Q Consensus 58 L~tLEElsLHQq~IEkIE~L~~~CRnLkILYLQNNlIsk 96 (100)
+.+|++++++.-+|..++.++ .|++|+.|+|.+|.|+.
T Consensus 45 l~~L~~L~l~~~~i~~~~~~~-~l~~L~~L~L~~n~l~~ 82 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSVQGIQ-YLPNVTKLFLNGNKLTD 82 (291)
T ss_dssp HHTCCEEECTTSCCCCCTTGG-GCTTCCEEECCSSCCCC
T ss_pred cCcccEEEccCCCcccChhHh-cCCCCCEEEccCCccCC
Confidence 445555555555555555444 45555555555555544
No 12
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=90.80 E-value=0.031 Score=38.99 Aligned_cols=38 Identities=18% Similarity=0.324 Sum_probs=17.4
Q ss_pred ccchhhhhcchhhhhhHhh--HHHhcchhhhhhhccCCccc
Q psy10771 58 IGTLEEIALHQEHIEKIEA--LDKWCKHLRILLLHSNIISK 96 (100)
Q Consensus 58 L~tLEElsLHQq~IEkIE~--L~~~CRnLkILYLQNNlIsk 96 (100)
+.+|++++|+.-.|..+.. ++ .|++|+.|+|.+|.|+.
T Consensus 84 l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~ 123 (272)
T 3rfs_A 84 LTNLTYLILTGNQLQSLPNGVFD-KLTNLKELVLVENQLQS 123 (272)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTT-TCTTCCEEECTTSCCCC
T ss_pred CCCCCEEECCCCccCccChhHhc-CCcCCCEEECCCCcCCc
Confidence 3444455555444444432 22 34555555555554443
No 13
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=90.70 E-value=0.035 Score=39.59 Aligned_cols=35 Identities=29% Similarity=0.370 Sum_probs=13.8
Q ss_pred cchhhhhcchhhhhhHhhHHHhcchhhhhhhccCCc
Q psy10771 59 GTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNII 94 (100)
Q Consensus 59 ~tLEElsLHQq~IEkIE~L~~~CRnLkILYLQNNlI 94 (100)
.+|++++|+.-.|..++.++ .|++|+.|+|.+|.|
T Consensus 112 ~~L~~L~L~~n~i~~~~~l~-~l~~L~~L~l~~n~l 146 (291)
T 1h6t_A 112 KKLKSLSLEHNGISDINGLV-HLPQLESLYLGNNKI 146 (291)
T ss_dssp TTCCEEECTTSCCCCCGGGG-GCTTCCEEECCSSCC
T ss_pred CCCCEEECCCCcCCCChhhc-CCCCCCEEEccCCcC
Confidence 33444444443333333333 333444444444433
No 14
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=90.42 E-value=0.03 Score=39.02 Aligned_cols=40 Identities=25% Similarity=0.336 Sum_probs=24.3
Q ss_pred cccchhhhhcchhhhhhHhhHHHhcchhhhhhhccCCcccc
Q psy10771 57 EIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL 97 (100)
Q Consensus 57 ~L~tLEElsLHQq~IEkIE~L~~~CRnLkILYLQNNlIskI 97 (100)
.+.+|++++|+.-.|..+..++ .|++|+.|+|.+|.|+.+
T Consensus 61 ~l~~L~~L~l~~n~l~~~~~l~-~l~~L~~L~L~~n~l~~~ 100 (272)
T 3rfs_A 61 YLPNVRYLALGGNKLHDISALK-ELTNLTYLILTGNQLQSL 100 (272)
T ss_dssp GCTTCCEEECTTSCCCCCGGGT-TCTTCCEEECTTSCCCCC
T ss_pred cCCCCcEEECCCCCCCCchhhc-CCCCCCEEECCCCccCcc
Confidence 3556666666666666655555 566666666666666544
No 15
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=90.34 E-value=0.043 Score=35.84 Aligned_cols=40 Identities=20% Similarity=0.271 Sum_probs=21.2
Q ss_pred cccchhhhhcchhhhhhHhh---HHHhcchhhhhhhccCCcccc
Q psy10771 57 EIGTLEEIALHQEHIEKIEA---LDKWCKHLRILLLHSNIISKL 97 (100)
Q Consensus 57 ~L~tLEElsLHQq~IEkIE~---L~~~CRnLkILYLQNNlIskI 97 (100)
.+.+|++++|+.-.|..+.. +. .|++|+.|+|++|.|+.+
T Consensus 86 ~l~~L~~L~L~~N~i~~~~~~~~l~-~l~~L~~L~l~~N~i~~~ 128 (176)
T 1a9n_A 86 ALPDLTELILTNNSLVELGDLDPLA-SLKSLTYLCILRNPVTNK 128 (176)
T ss_dssp HCTTCCEEECCSCCCCCGGGGGGGG-GCTTCCEEECCSSGGGGS
T ss_pred cCCCCCEEECCCCcCCcchhhHhhh-cCCCCCEEEecCCCCCCc
Confidence 34555666665555544433 33 455566666666665543
No 16
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=90.11 E-value=0.018 Score=38.40 Aligned_cols=39 Identities=31% Similarity=0.393 Sum_probs=23.5
Q ss_pred ccchhhhhcchhhhhhHhhHHHhcchhhhhhhccCCccc
Q psy10771 58 IGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISK 96 (100)
Q Consensus 58 L~tLEElsLHQq~IEkIE~L~~~CRnLkILYLQNNlIsk 96 (100)
+.+|+.++|+.-.|..+...-..|++|+.|+|++|.|+.
T Consensus 69 l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~ 107 (198)
T 1ds9_A 69 MENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIAS 107 (198)
T ss_dssp HTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCC
T ss_pred CCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCc
Confidence 455666666666666655444455666666666666654
No 17
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=89.73 E-value=0.034 Score=39.88 Aligned_cols=39 Identities=18% Similarity=0.294 Sum_probs=21.7
Q ss_pred ccchhhhhcchhhhhhHhhHHHhcchhhhhhhccCCcccc
Q psy10771 58 IGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL 97 (100)
Q Consensus 58 L~tLEElsLHQq~IEkIE~L~~~CRnLkILYLQNNlIskI 97 (100)
+.+|++++|+.-.|..+..++ -|++|+.|+|.+|.|+.+
T Consensus 62 l~~L~~L~L~~n~i~~~~~~~-~l~~L~~L~L~~n~l~~~ 100 (308)
T 1h6u_A 62 LNNLIGLELKDNQITDLAPLK-NLTKITELELSGNPLKNV 100 (308)
T ss_dssp CTTCCEEECCSSCCCCCGGGT-TCCSCCEEECCSCCCSCC
T ss_pred cCCCCEEEccCCcCCCChhHc-cCCCCCEEEccCCcCCCc
Confidence 455555555555555555443 455666666666655443
No 18
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=89.52 E-value=0.052 Score=36.70 Aligned_cols=42 Identities=19% Similarity=0.226 Sum_probs=29.2
Q ss_pred ccccchhhhhcchhhhhhHhh--HHHhcchhhhhhhccCCccccc
Q psy10771 56 KEIGTLEEIALHQEHIEKIEA--LDKWCKHLRILLLHSNIISKLG 98 (100)
Q Consensus 56 ~~L~tLEElsLHQq~IEkIE~--L~~~CRnLkILYLQNNlIskIE 98 (100)
+.+.+|++++|+.-.|..+.. +. -+++|+.|+|.+|.|+.+.
T Consensus 51 ~~l~~L~~L~Ls~N~i~~i~~~~f~-~l~~L~~L~Ls~N~l~~i~ 94 (193)
T 2wfh_A 51 SNYKHLTLIDLSNNRISTLSNQSFS-NMTQLLTLILSYNRLRCIP 94 (193)
T ss_dssp GGCTTCCEEECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCCBCC
T ss_pred hcccCCCEEECCCCcCCEeCHhHcc-CCCCCCEEECCCCccCEeC
Confidence 345677777777777777752 44 5677888888888777654
No 19
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=89.41 E-value=0.046 Score=38.51 Aligned_cols=40 Identities=28% Similarity=0.378 Sum_probs=22.4
Q ss_pred cccchhhhhcchhhhhhHhhHHHhcchhhhhhhccCCcccc
Q psy10771 57 EIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL 97 (100)
Q Consensus 57 ~L~tLEElsLHQq~IEkIE~L~~~CRnLkILYLQNNlIskI 97 (100)
.+.+|++++|+.-.|..++.++ .|++|+.|+|.+|.|+.+
T Consensus 86 ~l~~L~~L~L~~n~i~~~~~~~-~l~~L~~L~l~~n~i~~~ 125 (347)
T 4fmz_A 86 NLVKLTNLYIGTNKITDISALQ-NLTNLRELYLNEDNISDI 125 (347)
T ss_dssp TCTTCCEEECCSSCCCCCGGGT-TCTTCSEEECTTSCCCCC
T ss_pred cCCcCCEEEccCCcccCchHHc-CCCcCCEEECcCCcccCc
Confidence 3455555555555555555544 556666666666655543
No 20
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=89.15 E-value=0.048 Score=39.06 Aligned_cols=40 Identities=28% Similarity=0.437 Sum_probs=33.9
Q ss_pred ccchhhhhcchhhhhhHhh--HHHhcchhhhhhhccCCcccccC
Q psy10771 58 IGTLEEIALHQEHIEKIEA--LDKWCKHLRILLLHSNIISKLGK 99 (100)
Q Consensus 58 L~tLEElsLHQq~IEkIE~--L~~~CRnLkILYLQNNlIskIEN 99 (100)
+.+|++|.|.. .|..|+. .. .|.+|+.|.|.+|.|..|..
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~-~~~~L~~l~l~~n~i~~i~~ 141 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFK-GCDNLKICQIRKKTAPNLLP 141 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTT-TCTTCCEEEBCCSSCCEECT
T ss_pred cCCCcEEECCc-cccchhHHHhh-cCcccceEEcCCCCccccch
Confidence 78999999999 9999974 55 89999999999999877753
No 21
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=89.13 E-value=0.039 Score=37.89 Aligned_cols=39 Identities=21% Similarity=0.394 Sum_probs=17.3
Q ss_pred ccchhhhhcchhhhhhHhh--HHHhcchhhhhhhccCCcccc
Q psy10771 58 IGTLEEIALHQEHIEKIEA--LDKWCKHLRILLLHSNIISKL 97 (100)
Q Consensus 58 L~tLEElsLHQq~IEkIE~--L~~~CRnLkILYLQNNlIskI 97 (100)
+.+|+.++|+.-.|..+.. ++ .+++|+.|+|++|.|+.|
T Consensus 87 l~~L~~L~Ls~N~l~~l~~~~~~-~l~~L~~L~Ls~N~l~~l 127 (229)
T 3e6j_A 87 LTQLTVLDLGTNQLTVLPSAVFD-RLVHLKELFMCCNKLTEL 127 (229)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCCSC
T ss_pred CCCcCEEECCCCcCCccChhHhC-cchhhCeEeccCCccccc
Confidence 3444444444444444421 22 344455555555544433
No 22
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=88.67 E-value=0.042 Score=40.84 Aligned_cols=40 Identities=30% Similarity=0.396 Sum_probs=26.7
Q ss_pred cccchhhhhcchhhhhhHhh--HHHhcchhhhhhhccCCcccc
Q psy10771 57 EIGTLEEIALHQEHIEKIEA--LDKWCKHLRILLLHSNIISKL 97 (100)
Q Consensus 57 ~L~tLEElsLHQq~IEkIE~--L~~~CRnLkILYLQNNlIskI 97 (100)
-+..|+.++|+.-+|..|+. ++ -|++|+.|+|++|.|+.+
T Consensus 74 ~l~~L~~L~Ls~N~i~~i~~~~f~-~L~~L~~L~Ls~N~l~~l 115 (635)
T 4g8a_A 74 SFPELQVLDLSRCEIQTIEDGAYQ-SLSHLSTLILTGNPIQSL 115 (635)
T ss_dssp TCTTCCEEECTTCCCCEECTTTTT-TCTTCCEEECTTCCCCEE
T ss_pred CCCCCCEEECCCCcCCCcChhHhc-CCCCCCEEEccCCcCCCC
Confidence 35667777777777776642 44 567777777777776654
No 23
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=88.53 E-value=0.037 Score=41.14 Aligned_cols=42 Identities=17% Similarity=0.252 Sum_probs=32.2
Q ss_pred cccchhhhhcchhhhhhHh--hHHHhcchhhhhhhccCCcccccC
Q psy10771 57 EIGTLEEIALHQEHIEKIE--ALDKWCKHLRILLLHSNIISKLGK 99 (100)
Q Consensus 57 ~L~tLEElsLHQq~IEkIE--~L~~~CRnLkILYLQNNlIskIEN 99 (100)
-+.+|++++|+.=.|..+. .++ .|.+|+.|+|.+|.|+.|..
T Consensus 98 ~L~~L~~L~Ls~N~l~~l~~~~f~-~L~~L~~L~Ls~N~l~~l~~ 141 (635)
T 4g8a_A 98 SLSHLSTLILTGNPIQSLALGAFS-GLSSLQKLVAVETNLASLEN 141 (635)
T ss_dssp TCTTCCEEECTTCCCCEECGGGGT-TCTTCCEEECTTSCCCCSTT
T ss_pred CCCCCCEEEccCCcCCCCCHHHhc-CCCCCCEEECCCCcCCCCCh
Confidence 4678888888887777764 244 68889999999998887753
No 24
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=88.39 E-value=0.064 Score=41.03 Aligned_cols=66 Identities=21% Similarity=0.210 Sum_probs=48.8
Q ss_pred eeeeeccceehhhHHhHHHHHhhcccccccccchhhhhcchhhhhhHh--hHH---HhcchhhhhhhccCCcc
Q psy10771 28 SFVKLKKLSLFWTTVSEDLVRKRAEHNDKEIGTLEEIALHQEHIEKIE--ALD---KWCKHLRILLLHSNIIS 95 (100)
Q Consensus 28 ~~~~~~~~~~~MvrIT~eLIRKraEHNe~~L~tLEElsLHQq~IEkIE--~L~---~~CRnLkILYLQNNlIs 95 (100)
.|-+|+.|.+....++.+....-++ .+.+.+|++++|+.-.|...+ .|. ..|++|+.|.|++|.|+
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~--a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLE--SDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHH--CSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHh--CccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 3778999999888888655443333 246889999999887776632 222 26899999999999886
No 25
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=88.20 E-value=0.047 Score=37.42 Aligned_cols=41 Identities=27% Similarity=0.342 Sum_probs=26.1
Q ss_pred cccchhhhhcchhhhhhHhh-HHHhcchhhhhhhccCCcccc
Q psy10771 57 EIGTLEEIALHQEHIEKIEA-LDKWCKHLRILLLHSNIISKL 97 (100)
Q Consensus 57 ~L~tLEElsLHQq~IEkIE~-L~~~CRnLkILYLQNNlIskI 97 (100)
-+.+|++++|+.-.|..|.. .-.-+++|+.|+|++|.|+.+
T Consensus 78 ~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~ 119 (220)
T 2v9t_B 78 GLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCL 119 (220)
T ss_dssp TCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred CCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEe
Confidence 34667777777776666642 112567777777777777655
No 26
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=88.00 E-value=0.023 Score=37.86 Aligned_cols=40 Identities=25% Similarity=0.397 Sum_probs=31.7
Q ss_pred cccchhhhhcchhhhhhHhhHHHhcchhhhhhhccCCcccc
Q psy10771 57 EIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL 97 (100)
Q Consensus 57 ~L~tLEElsLHQq~IEkIE~L~~~CRnLkILYLQNNlIskI 97 (100)
.+.+|++++|+.-.|..+..++ .|++|+.|+|++|.|+.+
T Consensus 91 ~~~~L~~L~L~~N~l~~l~~~~-~l~~L~~L~l~~N~i~~~ 130 (198)
T 1ds9_A 91 VADTLEELWISYNQIASLSGIE-KLVNLRVLYMSNNKITNW 130 (198)
T ss_dssp HHHHCSEEEEEEEECCCHHHHH-HHHHSSEEEESEEECCCH
T ss_pred cCCcCCEEECcCCcCCcCCccc-cCCCCCEEECCCCcCCch
Confidence 3467888888888888887776 678888888888888754
No 27
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=87.99 E-value=0.066 Score=38.35 Aligned_cols=37 Identities=22% Similarity=0.399 Sum_probs=16.3
Q ss_pred ccchhhhhcchhhhhhHhhHHHhcchhhhhhhccCCcc
Q psy10771 58 IGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIIS 95 (100)
Q Consensus 58 L~tLEElsLHQq~IEkIE~L~~~CRnLkILYLQNNlIs 95 (100)
+.+|++++|+.-.|..+..++ .|++|+.|+|.+|.|+
T Consensus 106 l~~L~~L~l~~n~l~~~~~l~-~l~~L~~L~l~~n~l~ 142 (308)
T 1h6u_A 106 LQSIKTLDLTSTQITDVTPLA-GLSNLQVLYLDLNQIT 142 (308)
T ss_dssp CTTCCEEECTTSCCCCCGGGT-TCTTCCEEECCSSCCC
T ss_pred CCCCCEEECCCCCCCCchhhc-CCCCCCEEECCCCccC
Confidence 334444444444444444333 3444444444444443
No 28
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=87.96 E-value=0.04 Score=35.34 Aligned_cols=38 Identities=24% Similarity=0.158 Sum_probs=20.6
Q ss_pred ccchhhhhcchhhhhhHhhHHHhcchhhhhhhccCCccc
Q psy10771 58 IGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISK 96 (100)
Q Consensus 58 L~tLEElsLHQq~IEkIE~L~~~CRnLkILYLQNNlIsk 96 (100)
+.+|++++|+.-.|..++.++ .|++|+.|+|++|.|+.
T Consensus 48 l~~L~~L~l~~n~l~~~~~~~-~l~~L~~L~Ls~N~l~~ 85 (168)
T 2ell_A 48 FVNLEFLSLINVGLISVSNLP-KLPKLKKLELSENRIFG 85 (168)
T ss_dssp GGGCCEEEEESSCCCCCSSCC-CCSSCCEEEEESCCCCS
T ss_pred CCCCCEEeCcCCCCCChhhhc-cCCCCCEEECcCCcCch
Confidence 445555555555555554444 45556666666665543
No 29
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=87.46 E-value=0.058 Score=36.47 Aligned_cols=42 Identities=31% Similarity=0.366 Sum_probs=33.0
Q ss_pred ccccchhhhhcchhhhhhHhh--HHHhcchhhhhhhccCCccccc
Q psy10771 56 KEIGTLEEIALHQEHIEKIEA--LDKWCKHLRILLLHSNIISKLG 98 (100)
Q Consensus 56 ~~L~tLEElsLHQq~IEkIE~--L~~~CRnLkILYLQNNlIskIE 98 (100)
+-+.+|++++|+.-.|..|.. ++ -+++|+.|+|++|.|+.+.
T Consensus 75 ~~l~~L~~L~Ls~N~l~~i~~~~f~-~l~~L~~L~L~~N~l~~~~ 118 (193)
T 2wfh_A 75 SNMTQLLTLILSYNRLRCIPPRTFD-GLKSLRLLSLHGNDISVVP 118 (193)
T ss_dssp TTCTTCCEEECCSSCCCBCCTTTTT-TCTTCCEEECCSSCCCBCC
T ss_pred cCCCCCCEEECCCCccCEeCHHHhC-CCCCCCEEECCCCCCCeeC
Confidence 346788999999888888753 55 5788999999999888764
No 30
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=87.31 E-value=0.065 Score=38.14 Aligned_cols=41 Identities=20% Similarity=0.352 Sum_probs=28.7
Q ss_pred cccchhhhhcchhhhhhHh--hHHHhcchhhhhhhccCCccccc
Q psy10771 57 EIGTLEEIALHQEHIEKIE--ALDKWCKHLRILLLHSNIISKLG 98 (100)
Q Consensus 57 ~L~tLEElsLHQq~IEkIE--~L~~~CRnLkILYLQNNlIskIE 98 (100)
-+.+|++|+|+.-.|..|. .++ -+++|+.|+|++|.|+.+.
T Consensus 54 ~l~~L~~L~l~~N~l~~~~~~~~~-~l~~L~~L~l~~N~l~~~~ 96 (347)
T 2ifg_A 54 GLGELRNLTIVKSGLRFVAPDAFH-FTPRLSRLNLSFNALESLS 96 (347)
T ss_dssp SCCCCSEEECCSSCCCEECTTGGG-SCSCCCEEECCSSCCSCCC
T ss_pred cccCCCEEECCCCccceeCHHHhc-CCcCCCEEeCCCCccceeC
Confidence 4667778888877777764 234 5677888888888777653
No 31
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=87.17 E-value=0.056 Score=35.73 Aligned_cols=36 Identities=22% Similarity=0.345 Sum_probs=16.6
Q ss_pred ccchhhhhcchhhhhhHhh--HHHhcchhhhhhhccCCc
Q psy10771 58 IGTLEEIALHQEHIEKIEA--LDKWCKHLRILLLHSNII 94 (100)
Q Consensus 58 L~tLEElsLHQq~IEkIE~--L~~~CRnLkILYLQNNlI 94 (100)
+.+|++++|+.-.|..+.. ++ -+++|+.|+|.+|.+
T Consensus 77 l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 77 LTQLTQLSLNDNQLKSIPRGAFD-NLKSLTHIWLLNNPW 114 (170)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTT-TCTTCCEEECCSSCB
T ss_pred CCCCCEEECCCCccCEeCHHHhc-CCCCCCEEEeCCCCC
Confidence 3445555555444444421 22 344555555555544
No 32
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=86.88 E-value=0.063 Score=35.91 Aligned_cols=38 Identities=26% Similarity=0.309 Sum_probs=19.6
Q ss_pred ccchhhhhcchhhhhhHhh--HHHhcchhhhhhhccCCccc
Q psy10771 58 IGTLEEIALHQEHIEKIEA--LDKWCKHLRILLLHSNIISK 96 (100)
Q Consensus 58 L~tLEElsLHQq~IEkIE~--L~~~CRnLkILYLQNNlIsk 96 (100)
+.+|++++|+.-.|..+.. ++ ..++|+.|+|++|.|+.
T Consensus 77 l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~~ 116 (192)
T 1w8a_A 77 ASHIQELQLGENKIKEISNKMFL-GLHQLKTLNLYDNQISC 116 (192)
T ss_dssp CTTCCEEECCSCCCCEECSSSST-TCTTCCEEECCSSCCCE
T ss_pred cccCCEEECCCCcCCccCHHHhc-CCCCCCEEECCCCcCCe
Confidence 3455555555555555432 33 34555666666665543
No 33
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=86.48 E-value=0.066 Score=36.65 Aligned_cols=40 Identities=25% Similarity=0.393 Sum_probs=27.2
Q ss_pred cccchhhhhcchhhhhhHhh--HHHhcchhhhhhhccCCcccc
Q psy10771 57 EIGTLEEIALHQEHIEKIEA--LDKWCKHLRILLLHSNIISKL 97 (100)
Q Consensus 57 ~L~tLEElsLHQq~IEkIE~--L~~~CRnLkILYLQNNlIskI 97 (100)
-+.+|++++|+.-.|..+.. ++ .+++|+.|+|++|.|+.+
T Consensus 79 ~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~ 120 (220)
T 2v70_A 79 GASGVNEILLTSNRLENVQHKMFK-GLESLKTLMLRSNRITCV 120 (220)
T ss_dssp TCTTCCEEECCSSCCCCCCGGGGT-TCSSCCEEECTTSCCCCB
T ss_pred CCCCCCEEECCCCccCccCHhHhc-CCcCCCEEECCCCcCCeE
Confidence 35667777777777766642 44 567777777777777665
No 34
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=86.46 E-value=0.072 Score=35.56 Aligned_cols=42 Identities=14% Similarity=0.218 Sum_probs=28.9
Q ss_pred cccchhhhhcchhhhhhHhh-HHHhcchhhhhhhccCCccccc
Q psy10771 57 EIGTLEEIALHQEHIEKIEA-LDKWCKHLRILLLHSNIISKLG 98 (100)
Q Consensus 57 ~L~tLEElsLHQq~IEkIE~-L~~~CRnLkILYLQNNlIskIE 98 (100)
.+.+|+.++|+.-.|..|.. .-..+++|+.|+|++|.|+.+.
T Consensus 55 ~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~ 97 (174)
T 2r9u_A 55 HLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIP 97 (174)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeC
Confidence 45677788888777777643 2125678888888888877653
No 35
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=86.24 E-value=0.066 Score=35.73 Aligned_cols=40 Identities=23% Similarity=0.337 Sum_probs=31.3
Q ss_pred ccccchhhhhcchhhhhhHhh--HHHhcchhhhhhhccCCccc
Q psy10771 56 KEIGTLEEIALHQEHIEKIEA--LDKWCKHLRILLLHSNIISK 96 (100)
Q Consensus 56 ~~L~tLEElsLHQq~IEkIE~--L~~~CRnLkILYLQNNlIsk 96 (100)
+.+.+|++++|+.-.|..+.. ++ -+++|+.|+|++|.+..
T Consensus 78 ~~l~~L~~L~L~~N~l~~l~~~~~~-~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 78 DKLTQLTQLDLNDNHLKSIPRGAFD-NLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTT-TCTTCSEEECCSSCBCT
T ss_pred CCcchhhEEECCCCccceeCHHHhc-cccCCCEEEeCCCCccc
Confidence 456788999998888887753 44 57889999999998764
No 36
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=86.13 E-value=0.11 Score=42.12 Aligned_cols=37 Identities=27% Similarity=0.389 Sum_probs=17.1
Q ss_pred ccchhhhhcchhhhhhHhhHHHhcchhhhhhhccCCcc
Q psy10771 58 IGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIIS 95 (100)
Q Consensus 58 L~tLEElsLHQq~IEkIE~L~~~CRnLkILYLQNNlIs 95 (100)
+.+|++|+|+.-.|..++.++ -|++|+.|+|.+|.|+
T Consensus 108 l~~L~~L~Ls~N~l~~l~~l~-~l~~L~~L~Ls~N~l~ 144 (605)
T 1m9s_A 108 LKKLKSLSLEHNGISDINGLV-HLPQLESLYLGNNKIT 144 (605)
T ss_dssp CTTCCEEECTTSCCCCCGGGG-GCTTCSEEECCSSCCC
T ss_pred CCCCCEEEecCCCCCCCcccc-CCCccCEEECCCCccC
Confidence 344444444444444444444 3444444444444443
No 37
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=85.94 E-value=0.07 Score=35.35 Aligned_cols=38 Identities=24% Similarity=0.389 Sum_probs=18.1
Q ss_pred ccchhhhhcchhhhhhHhh--HHHhcchhhhhhhccCCccc
Q psy10771 58 IGTLEEIALHQEHIEKIEA--LDKWCKHLRILLLHSNIISK 96 (100)
Q Consensus 58 L~tLEElsLHQq~IEkIE~--L~~~CRnLkILYLQNNlIsk 96 (100)
+.+|++++|+.-.|..+.. ++ .+++|+.|+|++|.|+.
T Consensus 99 l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~l~~N~l~~ 138 (208)
T 2o6s_A 99 LTQLKELALNTNQLQSLPDGVFD-KLTQLKDLRLYQNQLKS 138 (208)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCSC
T ss_pred ccCCCEEEcCCCcCcccCHhHhc-cCCcCCEEECCCCccce
Confidence 3445555555544444422 22 34555555555555543
No 38
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=85.91 E-value=0.071 Score=35.32 Aligned_cols=40 Identities=20% Similarity=0.385 Sum_probs=24.6
Q ss_pred cccchhhhhcchhhhhhHhh--HHHhcchhhhhhhccCCcccc
Q psy10771 57 EIGTLEEIALHQEHIEKIEA--LDKWCKHLRILLLHSNIISKL 97 (100)
Q Consensus 57 ~L~tLEElsLHQq~IEkIE~--L~~~CRnLkILYLQNNlIskI 97 (100)
.+.+|++++|+.-.|..+.. ++ .+++|+.|+|++|.|+.+
T Consensus 74 ~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~ 115 (208)
T 2o6s_A 74 KLTSLTYLNLSTNQLQSLPNGVFD-KLTQLKELALNTNQLQSL 115 (208)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCCCC
T ss_pred CCCCcCEEECCCCcCCccCHhHhc-CccCCCEEEcCCCcCccc
Confidence 35666677776666665542 33 566777777777766554
No 39
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=85.88 E-value=0.1 Score=42.34 Aligned_cols=38 Identities=24% Similarity=0.360 Sum_probs=17.9
Q ss_pred ccchhhhhcchhhhhhHhhHHHhcchhhhhhhccCCccc
Q psy10771 58 IGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISK 96 (100)
Q Consensus 58 L~tLEElsLHQq~IEkIE~L~~~CRnLkILYLQNNlIsk 96 (100)
+.+|++|+|+.-.|..+..+. -|++|+.|+|.+|.|+.
T Consensus 64 l~~L~~L~Ls~N~l~~~~~l~-~l~~L~~L~Ls~N~l~~ 101 (605)
T 1m9s_A 64 LPNVTKLFLNGNKLTDIKPLT-NLKNLGWLFLDENKIKD 101 (605)
T ss_dssp CTTCCEEECTTSCCCCCGGGG-GCTTCCEEECCSSCCCC
T ss_pred CCCCCEEEeeCCCCCCChhhc-cCCCCCEEECcCCCCCC
Confidence 344444444444444444433 44455555555554443
No 40
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=85.73 E-value=0.15 Score=36.91 Aligned_cols=15 Identities=27% Similarity=0.255 Sum_probs=7.0
Q ss_pred hcchhhhhhhccCCc
Q psy10771 80 WCKHLRILLLHSNII 94 (100)
Q Consensus 80 ~CRnLkILYLQNNlI 94 (100)
.|++|+.|+|++|.|
T Consensus 242 ~~~~L~~L~L~~n~i 256 (386)
T 2ca6_A 242 SWPNLRELGLNDCLL 256 (386)
T ss_dssp GCTTCCEEECTTCCC
T ss_pred cCCCcCEEECCCCCC
Confidence 344444444444444
No 41
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=85.57 E-value=0.082 Score=34.92 Aligned_cols=42 Identities=17% Similarity=0.252 Sum_probs=30.7
Q ss_pred cccchhhhhcchhhhhhHhh-HHHhcchhhhhhhccCCccccc
Q psy10771 57 EIGTLEEIALHQEHIEKIEA-LDKWCKHLRILLLHSNIISKLG 98 (100)
Q Consensus 57 ~L~tLEElsLHQq~IEkIE~-L~~~CRnLkILYLQNNlIskIE 98 (100)
-+.+|++++|+.-.|..|.. .-..+++|+.|+|++|.|+.+.
T Consensus 52 ~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~ 94 (170)
T 3g39_A 52 RLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIP 94 (170)
T ss_dssp TCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeC
Confidence 46778888888888877753 2126788888888888887664
No 42
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=85.29 E-value=0.078 Score=34.38 Aligned_cols=40 Identities=20% Similarity=0.393 Sum_probs=24.5
Q ss_pred cccchhhhhcchhhhhhHhh--HHHhcchhhhhhhccCCcccc
Q psy10771 57 EIGTLEEIALHQEHIEKIEA--LDKWCKHLRILLLHSNIISKL 97 (100)
Q Consensus 57 ~L~tLEElsLHQq~IEkIE~--L~~~CRnLkILYLQNNlIskI 97 (100)
.+.+|++++|+.-.|..+.. ++ -+++|+.|+|++|.|+.+
T Consensus 74 ~l~~L~~L~l~~N~l~~~~~~~~~-~l~~L~~L~l~~N~l~~~ 115 (177)
T 2o6r_A 74 KLTKLTILYLHENKLQSLPNGVFD-KLTQLKELALDTNQLKSV 115 (177)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCSCC
T ss_pred CCCccCEEECCCCCccccCHHHhh-CCcccCEEECcCCcceEe
Confidence 45666677776666665532 23 456677777777766554
No 43
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=85.27 E-value=0.064 Score=38.15 Aligned_cols=41 Identities=20% Similarity=0.278 Sum_probs=32.9
Q ss_pred cccchhhhhcch-hhhhhHh--hHHHhcchhhhhhhccCCccccc
Q psy10771 57 EIGTLEEIALHQ-EHIEKIE--ALDKWCKHLRILLLHSNIISKLG 98 (100)
Q Consensus 57 ~L~tLEElsLHQ-q~IEkIE--~L~~~CRnLkILYLQNNlIskIE 98 (100)
.+.+|++|+|+. -.|..|. .++ -+++|+.|+|++|.|+.+.
T Consensus 29 ~~~~L~~L~l~~~n~l~~~~~~~~~-~l~~L~~L~l~~N~l~~~~ 72 (347)
T 2ifg_A 29 GAENLTELYIENQQHLQHLELRDLR-GLGELRNLTIVKSGLRFVA 72 (347)
T ss_dssp SCSCCSEEECCSCSSCCEECGGGSC-SCCCCSEEECCSSCCCEEC
T ss_pred CCCCeeEEEccCCCCCCCcChhHhc-cccCCCEEECCCCccceeC
Confidence 345799999984 7888875 355 6899999999999998765
No 44
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=84.92 E-value=0.087 Score=36.07 Aligned_cols=41 Identities=20% Similarity=0.281 Sum_probs=26.6
Q ss_pred cccchhhhhcchhhhhhHh--hHHHhcchhhhhhhccCCccccc
Q psy10771 57 EIGTLEEIALHQEHIEKIE--ALDKWCKHLRILLLHSNIISKLG 98 (100)
Q Consensus 57 ~L~tLEElsLHQq~IEkIE--~L~~~CRnLkILYLQNNlIskIE 98 (100)
.+.+|++++|+.-.|..+. .++ .+++|+.|+|++|.|+.+.
T Consensus 102 ~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~ 144 (220)
T 2v9t_B 102 GLFSLQLLLLNANKINCLRVDAFQ-DLHNLNLLSLYDNKLQTIA 144 (220)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCSCCC
T ss_pred CCCCCCEEECCCCCCCEeCHHHcC-CCCCCCEEECCCCcCCEEC
Confidence 3566777777777666662 344 5667777777777776553
No 45
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=84.72 E-value=0.1 Score=40.06 Aligned_cols=37 Identities=24% Similarity=0.357 Sum_probs=17.0
Q ss_pred ccchhhhhcchhhhhhHhhHHHhcchhhhhhhccCCcc
Q psy10771 58 IGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIIS 95 (100)
Q Consensus 58 L~tLEElsLHQq~IEkIE~L~~~CRnLkILYLQNNlIs 95 (100)
+..|++++|+.-.|..+..++ .|++|+.|+|++|.|+
T Consensus 41 l~~L~~L~Ls~n~l~~~~~l~-~l~~L~~L~Ls~n~l~ 77 (457)
T 3bz5_A 41 LATLTSLDCHNSSITDMTGIE-KLTGLTKLICTSNNIT 77 (457)
T ss_dssp HTTCCEEECCSSCCCCCTTGG-GCTTCSEEECCSSCCS
T ss_pred cCCCCEEEccCCCcccChhhc-ccCCCCEEEccCCcCC
Confidence 344444444444444443333 3444444444444444
No 46
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=84.71 E-value=0.099 Score=35.76 Aligned_cols=40 Identities=20% Similarity=0.302 Sum_probs=27.9
Q ss_pred cccchhhhhcchhhhhhHh--hHHHhcchhhhhhhccCCcccc
Q psy10771 57 EIGTLEEIALHQEHIEKIE--ALDKWCKHLRILLLHSNIISKL 97 (100)
Q Consensus 57 ~L~tLEElsLHQq~IEkIE--~L~~~CRnLkILYLQNNlIskI 97 (100)
.+.+|++++|+.-.|..+. .++ -+++|+.|+|++|.|+.+
T Consensus 103 ~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~ 144 (220)
T 2v70_A 103 GLESLKTLMLRSNRITCVGNDSFI-GLSSVRLLSLYDNQITTV 144 (220)
T ss_dssp TCSSCCEEECTTSCCCCBCTTSST-TCTTCSEEECTTSCCCCB
T ss_pred CCcCCCEEECCCCcCCeECHhHcC-CCccCCEEECCCCcCCEE
Confidence 4567777777777777662 344 567778888888877665
No 47
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=84.39 E-value=0.094 Score=37.52 Aligned_cols=39 Identities=28% Similarity=0.302 Sum_probs=21.2
Q ss_pred ccchhhhhcchhhhhhHh--hHHHhcchhhhhhhccCCcccc
Q psy10771 58 IGTLEEIALHQEHIEKIE--ALDKWCKHLRILLLHSNIISKL 97 (100)
Q Consensus 58 L~tLEElsLHQq~IEkIE--~L~~~CRnLkILYLQNNlIskI 97 (100)
+.+|++++|+.-.|..+. .++ -|++|+.|+|++|.|+.+
T Consensus 75 l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~ 115 (353)
T 2z80_A 75 CVNLQALVLTSNGINTIEEDSFS-SLGSLEHLDLSYNYLSNL 115 (353)
T ss_dssp CTTCCEEECTTSCCCEECTTTTT-TCTTCCEEECCSSCCSSC
T ss_pred CCCCCEEECCCCccCccCHhhcC-CCCCCCEEECCCCcCCcC
Confidence 455556666555555552 243 455666666666655543
No 48
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=84.22 E-value=0.12 Score=35.52 Aligned_cols=42 Identities=17% Similarity=0.321 Sum_probs=31.2
Q ss_pred ccccchhhhhcchhhhhhHh-hHHHhcchhhhhhhccCCccccc
Q psy10771 56 KEIGTLEEIALHQEHIEKIE-ALDKWCKHLRILLLHSNIISKLG 98 (100)
Q Consensus 56 ~~L~tLEElsLHQq~IEkIE-~L~~~CRnLkILYLQNNlIskIE 98 (100)
+.+.+|++++|+.-.|..|. .++ .+++|+.|+|++|.|+.+.
T Consensus 109 ~~l~~L~~L~Ls~N~l~~lp~~~~-~l~~L~~L~L~~N~l~~~~ 151 (229)
T 3e6j_A 109 DRLVHLKELFMCCNKLTELPRGIE-RLTHLTHLALDQNQLKSIP 151 (229)
T ss_dssp TTCTTCCEEECCSSCCCSCCTTGG-GCTTCSEEECCSSCCCCCC
T ss_pred CcchhhCeEeccCCcccccCcccc-cCCCCCEEECCCCcCCccC
Confidence 34678888888888887773 454 6788888888888877653
No 49
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=84.22 E-value=0.1 Score=35.83 Aligned_cols=41 Identities=20% Similarity=0.356 Sum_probs=28.0
Q ss_pred cccchhhhhcchhhhhhHh--hHHHhcchhhhhhhccCCccccc
Q psy10771 57 EIGTLEEIALHQEHIEKIE--ALDKWCKHLRILLLHSNIISKLG 98 (100)
Q Consensus 57 ~L~tLEElsLHQq~IEkIE--~L~~~CRnLkILYLQNNlIskIE 98 (100)
.+.+|++++|+.-.|..+. .++ .+++|+.|+|++|.|+.+.
T Consensus 81 ~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~ 123 (251)
T 3m19_A 81 DLTELGTLGLANNQLASLPLGVFD-HLTQLDKLYLGGNQLKSLP 123 (251)
T ss_dssp TCTTCCEEECTTSCCCCCCTTTTT-TCTTCCEEECCSSCCCCCC
T ss_pred cCCcCCEEECCCCcccccChhHhc-ccCCCCEEEcCCCcCCCcC
Confidence 4567777777777776664 233 5677888888888776653
No 50
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=84.11 E-value=0.23 Score=35.05 Aligned_cols=41 Identities=17% Similarity=0.163 Sum_probs=25.4
Q ss_pred cccchhhhhcchhhhhhHhh----HHHhcchhhhhhhccCCcccc
Q psy10771 57 EIGTLEEIALHQEHIEKIEA----LDKWCKHLRILLLHSNIISKL 97 (100)
Q Consensus 57 ~L~tLEElsLHQq~IEkIE~----L~~~CRnLkILYLQNNlIskI 97 (100)
.+.+|++++|+.-.|..++. +-..+++|+.|+|++|.|+.+
T Consensus 195 ~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~ 239 (310)
T 4glp_A 195 KFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRAT 239 (310)
T ss_dssp SSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCC
T ss_pred cCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCcc
Confidence 45567777777766665554 222456777777777766553
No 51
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=83.81 E-value=0.086 Score=39.13 Aligned_cols=36 Identities=25% Similarity=0.195 Sum_probs=15.2
Q ss_pred cchhhhhcchhhhhhHhhHHHhcchhhhhhhccCCcc
Q psy10771 59 GTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIIS 95 (100)
Q Consensus 59 ~tLEElsLHQq~IEkIE~L~~~CRnLkILYLQNNlIs 95 (100)
.+|++++|+.-.|..+..+. -+++|+.|+|.+|.|+
T Consensus 185 ~~L~~L~L~~n~l~~~~~~~-~l~~L~~L~Ls~N~l~ 220 (440)
T 3zyj_A 185 SNLRYLNLAMCNLREIPNLT-PLIKLDELDLSGNHLS 220 (440)
T ss_dssp SSCCEEECTTSCCSSCCCCT-TCSSCCEEECTTSCCC
T ss_pred cccCeecCCCCcCccccccC-CCcccCEEECCCCccC
Confidence 34444444444444443333 3344444444444443
No 52
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=83.72 E-value=0.058 Score=36.49 Aligned_cols=38 Identities=16% Similarity=0.260 Sum_probs=17.8
Q ss_pred ccchhhhhcch-hhhhhHh--hHHHhcchhhhhhhccCCccc
Q psy10771 58 IGTLEEIALHQ-EHIEKIE--ALDKWCKHLRILLLHSNIISK 96 (100)
Q Consensus 58 L~tLEElsLHQ-q~IEkIE--~L~~~CRnLkILYLQNNlIsk 96 (100)
+.+|++++|+. -.|..|. .++ -|++|+.|+|.+|.|+.
T Consensus 79 l~~L~~L~l~~~n~l~~i~~~~f~-~l~~L~~L~l~~n~l~~ 119 (239)
T 2xwt_C 79 LSKVTHIEIRNTRNLTYIDPDALK-ELPLLKFLGIFNTGLKM 119 (239)
T ss_dssp CTTCCEEEEEEETTCCEECTTSEE-CCTTCCEEEEEEECCCS
T ss_pred CcCCcEEECCCCCCeeEcCHHHhC-CCCCCCEEeCCCCCCcc
Confidence 34455555554 4444443 122 34555555555555443
No 53
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=83.57 E-value=0.12 Score=38.72 Aligned_cols=39 Identities=21% Similarity=0.342 Sum_probs=21.4
Q ss_pred cccchhhhhcchhhhhhHhhHHHhcchhhhhhhccCCccc
Q psy10771 57 EIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISK 96 (100)
Q Consensus 57 ~L~tLEElsLHQq~IEkIE~L~~~CRnLkILYLQNNlIsk 96 (100)
.+.+|++++|+.-.|..+..++ .|++|+.|+|.+|.|+.
T Consensus 66 ~l~~L~~L~Ls~n~l~~~~~~~-~l~~L~~L~l~~n~l~~ 104 (466)
T 1o6v_A 66 YLNNLTQINFSNNQLTDITPLK-NLTKLVDILMNNNQIAD 104 (466)
T ss_dssp GCTTCCEEECCSSCCCCCGGGT-TCTTCCEEECCSSCCCC
T ss_pred hhcCCCEEECCCCccCCchhhh-ccccCCEEECCCCcccc
Confidence 3455555555555555554444 45556666666665544
No 54
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=83.50 E-value=0.1 Score=38.05 Aligned_cols=39 Identities=23% Similarity=0.388 Sum_probs=23.7
Q ss_pred ccchhhhhcchhhhhhHhh--HHHhcchhhhhhhccCCcccc
Q psy10771 58 IGTLEEIALHQEHIEKIEA--LDKWCKHLRILLLHSNIISKL 97 (100)
Q Consensus 58 L~tLEElsLHQq~IEkIE~--L~~~CRnLkILYLQNNlIskI 97 (100)
+.+|++|+|+.-.|..+.. ++ .+++|+.|+|++|.|+.+
T Consensus 87 l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~N~i~~~ 127 (361)
T 2xot_A 87 VPNLRYLDLSSNHLHTLDEFLFS-DLQALEVLLLYNNHIVVV 127 (361)
T ss_dssp CTTCCEEECCSSCCCEECTTTTT-TCTTCCEEECCSSCCCEE
T ss_pred CCCCCEEECCCCcCCcCCHHHhC-CCcCCCEEECCCCcccEE
Confidence 4566666666666665532 33 456667777777766654
No 55
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=83.27 E-value=0.15 Score=38.05 Aligned_cols=38 Identities=26% Similarity=0.348 Sum_probs=19.1
Q ss_pred ccchhhhhcchhhhhhHhhHHHhcchhhhhhhccCCccc
Q psy10771 58 IGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISK 96 (100)
Q Consensus 58 L~tLEElsLHQq~IEkIE~L~~~CRnLkILYLQNNlIsk 96 (100)
+.+|++++|+.-.+..+..++ .|++|+.|+|.+|.|+.
T Consensus 89 l~~L~~L~l~~n~l~~~~~~~-~l~~L~~L~L~~n~l~~ 126 (466)
T 1o6v_A 89 LTKLVDILMNNNQIADITPLA-NLTNLTGLTLFNNQITD 126 (466)
T ss_dssp CTTCCEEECCSSCCCCCGGGT-TCTTCCEEECCSSCCCC
T ss_pred cccCCEEECCCCccccChhhc-CCCCCCEEECCCCCCCC
Confidence 344555555555554444433 45555555555555443
No 56
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=83.14 E-value=0.12 Score=35.83 Aligned_cols=15 Identities=27% Similarity=0.261 Sum_probs=6.6
Q ss_pred cchhhhhhhccCCcc
Q psy10771 81 CKHLRILLLHSNIIS 95 (100)
Q Consensus 81 CRnLkILYLQNNlIs 95 (100)
|++|+.|+|++|.|+
T Consensus 156 l~~L~~L~L~~n~l~ 170 (270)
T 2o6q_A 156 LTSLKELRLYNNQLK 170 (270)
T ss_dssp CTTCCEEECCSSCCS
T ss_pred CcccceeEecCCcCc
Confidence 344444444444443
No 57
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=83.07 E-value=0.11 Score=35.54 Aligned_cols=36 Identities=28% Similarity=0.444 Sum_probs=15.3
Q ss_pred cchhhhhcchhhhhhHhh--HHHhcchhhhhhhccCCcc
Q psy10771 59 GTLEEIALHQEHIEKIEA--LDKWCKHLRILLLHSNIIS 95 (100)
Q Consensus 59 ~tLEElsLHQq~IEkIE~--L~~~CRnLkILYLQNNlIs 95 (100)
.+|++++|+.-.|..+.. ++ .+++|+.|+|++|.|+
T Consensus 131 ~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~ 168 (251)
T 3m19_A 131 TKLKELRLNTNQLQSIPAGAFD-KLTNLQTLSLSTNQLQ 168 (251)
T ss_dssp TTCCEEECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCS
T ss_pred CcccEEECcCCcCCccCHHHcC-cCcCCCEEECCCCcCC
Confidence 344444444444443321 22 3344444444444443
No 58
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=82.92 E-value=0.11 Score=37.97 Aligned_cols=40 Identities=30% Similarity=0.451 Sum_probs=25.3
Q ss_pred cccchhhhhcchhhhhhHh--hHHHhcchhhhhhhccCCcccc
Q psy10771 57 EIGTLEEIALHQEHIEKIE--ALDKWCKHLRILLLHSNIISKL 97 (100)
Q Consensus 57 ~L~tLEElsLHQq~IEkIE--~L~~~CRnLkILYLQNNlIskI 97 (100)
.+.+|++++|+.-.|..+. .++ -+++|+.|+|++|.|+.+
T Consensus 110 ~l~~L~~L~L~~N~i~~~~~~~~~-~l~~L~~L~L~~N~l~~l 151 (361)
T 2xot_A 110 DLQALEVLLLYNNHIVVVDRNAFE-DMAQLQKLYLSQNQISRF 151 (361)
T ss_dssp TCTTCCEEECCSSCCCEECTTTTT-TCTTCCEEECCSSCCCSC
T ss_pred CCcCCCEEECCCCcccEECHHHhC-CcccCCEEECCCCcCCee
Confidence 3566677777766666653 243 456777777777776654
No 59
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=82.90 E-value=0.16 Score=40.64 Aligned_cols=7 Identities=14% Similarity=0.401 Sum_probs=2.5
Q ss_pred hhhhhcc
Q psy10771 61 LEEIALH 67 (100)
Q Consensus 61 LEElsLH 67 (100)
|++++|+
T Consensus 465 L~~L~Ls 471 (567)
T 1dce_A 465 VTHLDLS 471 (567)
T ss_dssp CCEEECC
T ss_pred CcEeecC
Confidence 3333333
No 60
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=82.75 E-value=0.12 Score=33.56 Aligned_cols=38 Identities=21% Similarity=0.362 Sum_probs=21.3
Q ss_pred ccchhhhhcchhhhhhHhh-HHHhcchhhhhhhccCCcc
Q psy10771 58 IGTLEEIALHQEHIEKIEA-LDKWCKHLRILLLHSNIIS 95 (100)
Q Consensus 58 L~tLEElsLHQq~IEkIE~-L~~~CRnLkILYLQNNlIs 95 (100)
+.+|++++|+.-.|..+.. .-..+++|+.|+|++|.+.
T Consensus 99 l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 99 LTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 4566666666666655532 1124566666666666554
No 61
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=82.75 E-value=0.13 Score=36.45 Aligned_cols=39 Identities=23% Similarity=0.358 Sum_probs=22.6
Q ss_pred ccchhhhhcchhhhhhH--hhHHHhcchhhhhhhccCCcccc
Q psy10771 58 IGTLEEIALHQEHIEKI--EALDKWCKHLRILLLHSNIISKL 97 (100)
Q Consensus 58 L~tLEElsLHQq~IEkI--E~L~~~CRnLkILYLQNNlIskI 97 (100)
+.+|++++|+.-.|..+ +.++ -|++|+.|+|++|.|+.+
T Consensus 77 l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~l 117 (332)
T 2ft3_A 77 LQHLYALVLVNNKISKIHEKAFS-PLRKLQKLYISKNHLVEI 117 (332)
T ss_dssp CTTCCEEECCSSCCCEECGGGST-TCTTCCEEECCSSCCCSC
T ss_pred CCCCcEEECCCCccCccCHhHhh-CcCCCCEEECCCCcCCcc
Confidence 45566666666656555 2343 456666666666666544
No 62
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=82.43 E-value=0.11 Score=38.64 Aligned_cols=38 Identities=21% Similarity=0.321 Sum_probs=16.8
Q ss_pred cchhhhhcchhhhhhHh--hHHHhcchhhhhhhccCCcccc
Q psy10771 59 GTLEEIALHQEHIEKIE--ALDKWCKHLRILLLHSNIISKL 97 (100)
Q Consensus 59 ~tLEElsLHQq~IEkIE--~L~~~CRnLkILYLQNNlIskI 97 (100)
.+|++++|+.-.|..+. .+. -|++|+.|+|.+|.|+.+
T Consensus 218 ~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~ 257 (452)
T 3zyi_A 218 VGLEELEMSGNHFPEIRPGSFH-GLSSLKKLWVMNSQVSLI 257 (452)
T ss_dssp TTCCEEECTTSCCSEECGGGGT-TCTTCCEEECTTSCCCEE
T ss_pred ccccEEECcCCcCcccCccccc-CccCCCEEEeCCCcCceE
Confidence 34444444444444431 222 344555555555555443
No 63
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=82.19 E-value=0.14 Score=36.67 Aligned_cols=41 Identities=29% Similarity=0.463 Sum_probs=27.8
Q ss_pred ccchh-hhhcchhhhhhHh-hHHHhcchhhhhhhccCCcccccC
Q psy10771 58 IGTLE-EIALHQEHIEKIE-ALDKWCKHLRILLLHSNIISKLGK 99 (100)
Q Consensus 58 L~tLE-ElsLHQq~IEkIE-~L~~~CRnLkILYLQNNlIskIEN 99 (100)
+.+|+ +|.|.. .+..|+ .-=..|.+|+.|+|.+|.|+.|+.
T Consensus 272 ~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~ 314 (329)
T 3sb4_A 272 CGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGD 314 (329)
T ss_dssp CTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECT
T ss_pred ChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccch
Confidence 34566 777776 677775 222268888888888888877764
No 64
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=82.13 E-value=0.12 Score=35.52 Aligned_cols=39 Identities=18% Similarity=0.269 Sum_probs=21.0
Q ss_pred ccchhhhhcchhhhhhHh--hHHHhcchhhhhhhccCCcccc
Q psy10771 58 IGTLEEIALHQEHIEKIE--ALDKWCKHLRILLLHSNIISKL 97 (100)
Q Consensus 58 L~tLEElsLHQq~IEkIE--~L~~~CRnLkILYLQNNlIskI 97 (100)
+.+|++++|+.-.|..+. .++ -|++|+.|+|.+|.|..+
T Consensus 75 l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~ 115 (276)
T 2z62_A 75 LSHLSTLILTGNPIQSLALGAFS-GLSSLQKLVAVETNLASL 115 (276)
T ss_dssp CTTCCEEECTTCCCCEECTTTTT-TCTTCCEEECTTSCCCCS
T ss_pred CcCCCEEECCCCccCccChhhhc-CCccccEEECCCCCcccc
Confidence 455566666555555443 233 455666666666655544
No 65
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=81.85 E-value=0.12 Score=36.84 Aligned_cols=38 Identities=18% Similarity=0.245 Sum_probs=17.4
Q ss_pred ccchhhhhcchhhhhhHh--hHHHhcchhhhhhhccCCccc
Q psy10771 58 IGTLEEIALHQEHIEKIE--ALDKWCKHLRILLLHSNIISK 96 (100)
Q Consensus 58 L~tLEElsLHQq~IEkIE--~L~~~CRnLkILYLQNNlIsk 96 (100)
+.+|++++|+.-.|..+. .++ -+++|+.|+|++|.|+.
T Consensus 99 l~~L~~L~l~~N~l~~l~~~~~~-~l~~L~~L~L~~N~l~~ 138 (290)
T 1p9a_G 99 LPALTVLDVSFNRLTSLPLGALR-GLGELQELYLKGNELKT 138 (290)
T ss_dssp CTTCCEEECCSSCCCCCCSSTTT-TCTTCCEEECTTSCCCC
T ss_pred CCCCCEEECCCCcCcccCHHHHc-CCCCCCEEECCCCCCCc
Confidence 334444444444444442 233 34455555555555443
No 66
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=81.84 E-value=0.14 Score=36.55 Aligned_cols=42 Identities=17% Similarity=0.264 Sum_probs=20.4
Q ss_pred ccccchhhhhcchhhhhhHhhHHHhcchhhhhhhccCCcccc
Q psy10771 56 KEIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL 97 (100)
Q Consensus 56 ~~L~tLEElsLHQq~IEkIE~L~~~CRnLkILYLQNNlIskI 97 (100)
+.+.+|++++|+.-.|..+...-..+++|+.|+|++|.|+.+
T Consensus 74 ~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l 115 (290)
T 1p9a_G 74 GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSL 115 (290)
T ss_dssp SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCC
T ss_pred CCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCccc
Confidence 344555555555555554433222445555555555555443
No 67
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=81.74 E-value=0.14 Score=35.14 Aligned_cols=39 Identities=26% Similarity=0.328 Sum_probs=21.5
Q ss_pred ccchhhhhcchhhhhhHh---hHHHhcchhhhhhhccCCcccc
Q psy10771 58 IGTLEEIALHQEHIEKIE---ALDKWCKHLRILLLHSNIISKL 97 (100)
Q Consensus 58 L~tLEElsLHQq~IEkIE---~L~~~CRnLkILYLQNNlIskI 97 (100)
+.+|++++|+.-.|..++ .++ .+++|+.|+|.+|.|+.+
T Consensus 123 l~~L~~L~l~~n~l~~~~l~~~~~-~l~~L~~L~Ls~N~l~~~ 164 (276)
T 2z62_A 123 LKTLKELNVAHNLIQSFKLPEYFS-NLTNLEHLDLSSNKIQSI 164 (276)
T ss_dssp CTTCCEEECCSSCCCCCCCCGGGG-GCTTCCEEECCSSCCCEE
T ss_pred CCCCCEEECcCCccceecCchhhc-cCCCCCEEECCCCCCCcC
Confidence 455666666655555422 333 456666666666665543
No 68
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=81.53 E-value=0.33 Score=33.79 Aligned_cols=35 Identities=20% Similarity=0.180 Sum_probs=15.5
Q ss_pred ccchhhhhcchh-hhhh--HhhHHHhcchhhhhhhccC
Q psy10771 58 IGTLEEIALHQE-HIEK--IEALDKWCKHLRILLLHSN 92 (100)
Q Consensus 58 L~tLEElsLHQq-~IEk--IE~L~~~CRnLkILYLQNN 92 (100)
+.+|++++|+.- .+.. +..+-..|++|+.|+|.+|
T Consensus 141 ~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~ 178 (336)
T 2ast_B 141 NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWC 178 (336)
T ss_dssp CTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCC
T ss_pred CCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCC
Confidence 344555555443 3332 3332224555555555555
No 69
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=81.20 E-value=0.16 Score=37.02 Aligned_cols=38 Identities=24% Similarity=0.324 Sum_probs=17.5
Q ss_pred ccchhhhhcchhhhhhHh--hHHHhcchhhhhhhccCCccc
Q psy10771 58 IGTLEEIALHQEHIEKIE--ALDKWCKHLRILLLHSNIISK 96 (100)
Q Consensus 58 L~tLEElsLHQq~IEkIE--~L~~~CRnLkILYLQNNlIsk 96 (100)
+.+|++++|+.-.|..+. .++ .|++|+.|+|++|.|+.
T Consensus 322 l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~ 361 (455)
T 3v47_A 322 LTHLLKLNLSQNFLGSIDSRMFE-NLDKLEVLDLSYNHIRA 361 (455)
T ss_dssp CTTCCEEECCSSCCCEECGGGGT-TCTTCCEEECCSSCCCE
T ss_pred cccCCEEECCCCccCCcChhHhc-CcccCCEEECCCCcccc
Confidence 344555555554444441 222 34555555555554443
No 70
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=81.17 E-value=0.2 Score=35.79 Aligned_cols=39 Identities=23% Similarity=0.335 Sum_probs=23.6
Q ss_pred ccchhhhhcchhhhhhHhh--HHHhcchhhhhhhccCCcccc
Q psy10771 58 IGTLEEIALHQEHIEKIEA--LDKWCKHLRILLLHSNIISKL 97 (100)
Q Consensus 58 L~tLEElsLHQq~IEkIE~--L~~~CRnLkILYLQNNlIskI 97 (100)
+.+|++++|+.-.|..+.. ++ .|++|+.|+|.+|.|+.+
T Consensus 99 l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~l 139 (353)
T 2z80_A 99 LGSLEHLDLSYNYLSNLSSSWFK-PLSSLTFLNLLGNPYKTL 139 (353)
T ss_dssp CTTCCEEECCSSCCSSCCHHHHT-TCTTCSEEECTTCCCSSS
T ss_pred CCCCCEEECCCCcCCcCCHhHhC-CCccCCEEECCCCCCccc
Confidence 4566666666666665532 33 466666666666666554
No 71
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=81.04 E-value=0.17 Score=35.73 Aligned_cols=39 Identities=28% Similarity=0.339 Sum_probs=21.9
Q ss_pred ccchhhhhcchhhhhhH--hhHHHhcchhhhhhhccCCcccc
Q psy10771 58 IGTLEEIALHQEHIEKI--EALDKWCKHLRILLLHSNIISKL 97 (100)
Q Consensus 58 L~tLEElsLHQq~IEkI--E~L~~~CRnLkILYLQNNlIskI 97 (100)
+.+|++++|+.-.|..+ +.++ .|++|+.|+|++|.|+.+
T Consensus 75 l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~l 115 (330)
T 1xku_A 75 LKNLHTLILINNKISKISPGAFA-PLVKLERLYLSKNQLKEL 115 (330)
T ss_dssp CTTCCEEECCSSCCCCBCTTTTT-TCTTCCEEECCSSCCSBC
T ss_pred CCCCCEEECCCCcCCeeCHHHhc-CCCCCCEEECCCCcCCcc
Confidence 45566666665555555 2344 456666666666665543
No 72
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=80.81 E-value=0.26 Score=35.62 Aligned_cols=40 Identities=30% Similarity=0.362 Sum_probs=26.2
Q ss_pred cccchhhhhcchhhhhhHh-hHHHhcchhhhhhhccCCcccc
Q psy10771 57 EIGTLEEIALHQEHIEKIE-ALDKWCKHLRILLLHSNIISKL 97 (100)
Q Consensus 57 ~L~tLEElsLHQq~IEkIE-~L~~~CRnLkILYLQNNlIskI 97 (100)
.+.+|++++|+.-.|..+. .++ .+++|+.|+|.+|.|+.+
T Consensus 293 ~l~~L~~L~L~~n~l~~~~~~~~-~l~~L~~L~L~~N~i~~~ 333 (390)
T 3o6n_A 293 PIPTLKVLDLSHNHLLHVERNQP-QFDRLENLYLDHNSIVTL 333 (390)
T ss_dssp CCTTCCEEECCSSCCCCCGGGHH-HHTTCSEEECCSSCCCCC
T ss_pred CCCCCCEEECCCCcceecCcccc-ccCcCCEEECCCCcccee
Confidence 4566777777776666664 344 567777777777777654
No 73
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=80.57 E-value=0.14 Score=36.14 Aligned_cols=37 Identities=24% Similarity=0.345 Sum_probs=25.4
Q ss_pred cchhhhhcchhhhhhHhhHHHhcchhhhhhhccCCcccc
Q psy10771 59 GTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL 97 (100)
Q Consensus 59 ~tLEElsLHQq~IEkIE~L~~~CRnLkILYLQNNlIskI 97 (100)
.+|++++|+.-.|..|.. .++++|+.|+|++|.|+.+
T Consensus 251 ~~L~~L~Ls~N~l~~lp~--~~~~~L~~L~Ls~N~l~~~ 287 (310)
T 4glp_A 251 SALNSLNLSFAGLEQVPK--GLPAKLRVLDLSSNRLNRA 287 (310)
T ss_dssp TTCCCEECCSSCCCSCCS--CCCSCCSCEECCSCCCCSC
T ss_pred CcCCEEECCCCCCCchhh--hhcCCCCEEECCCCcCCCC
Confidence 577788887777776532 2357777777777777654
No 74
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=80.50 E-value=0.19 Score=37.22 Aligned_cols=39 Identities=21% Similarity=0.405 Sum_probs=22.9
Q ss_pred ccchhhhhcchhhhhhHhh--HHHhcchhhhhhhccCCcccc
Q psy10771 58 IGTLEEIALHQEHIEKIEA--LDKWCKHLRILLLHSNIISKL 97 (100)
Q Consensus 58 L~tLEElsLHQq~IEkIE~--L~~~CRnLkILYLQNNlIskI 97 (100)
+.+|++++|+.-.|..+.. ++ .+++|+.|+|++|.|+.+
T Consensus 111 l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~N~i~~~ 151 (440)
T 3zyj_A 111 LANLNTLELFDNRLTTIPNGAFV-YLSKLKELWLRNNPIESI 151 (440)
T ss_dssp CSSCCEEECCSSCCSSCCTTTSC-SCSSCCEEECCSCCCCEE
T ss_pred CccCCEEECCCCcCCeeCHhHhh-ccccCceeeCCCCccccc
Confidence 4556666666655555532 33 456666666666666554
No 75
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=80.48 E-value=0.18 Score=37.32 Aligned_cols=39 Identities=21% Similarity=0.216 Sum_probs=22.5
Q ss_pred ccchhhhhcchhhhhhHhh--HHHhcchhhhhhhccCCcccc
Q psy10771 58 IGTLEEIALHQEHIEKIEA--LDKWCKHLRILLLHSNIISKL 97 (100)
Q Consensus 58 L~tLEElsLHQq~IEkIE~--L~~~CRnLkILYLQNNlIskI 97 (100)
+.+|++++|+.-.|..+.. ++ -|++|+.|+|.+|.|..+
T Consensus 79 l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~i~~~ 119 (477)
T 2id5_A 79 LFNLRTLGLRSNRLKLIPLGVFT-GLSNLTKLDISENKIVIL 119 (477)
T ss_dssp CTTCCEEECCSSCCCSCCTTSST-TCTTCCEEECTTSCCCEE
T ss_pred CccCCEEECCCCcCCccCccccc-CCCCCCEEECCCCccccC
Confidence 4556666666655555532 33 466666666666666543
No 76
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=80.35 E-value=0.12 Score=36.70 Aligned_cols=38 Identities=16% Similarity=0.189 Sum_probs=22.9
Q ss_pred ccchhhhhcchhhhhhHhhHHHhcchhhhhhhccCCcccc
Q psy10771 58 IGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL 97 (100)
Q Consensus 58 L~tLEElsLHQq~IEkIE~L~~~CRnLkILYLQNNlIskI 97 (100)
+.+|++++|+.-.|..|.. ...++|+.|+|.+|.|+.+
T Consensus 252 l~~L~~L~Ls~N~l~~ip~--~~~~~L~~L~Ls~N~l~~~ 289 (312)
T 1wwl_A 252 PSQLNSLNLSFTGLKQVPK--GLPAKLSVLDLSYNRLDRN 289 (312)
T ss_dssp CTTCCEEECTTSCCSSCCS--SCCSEEEEEECCSSCCCSC
T ss_pred cCCCCEEECCCCccChhhh--hccCCceEEECCCCCCCCC
Confidence 4567777777766665532 1126677777777766554
No 77
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=80.22 E-value=0.15 Score=35.18 Aligned_cols=36 Identities=25% Similarity=0.350 Sum_probs=15.1
Q ss_pred cchhhhhcchhhhhhHhh--HHHhcchhhhhhhccCCcc
Q psy10771 59 GTLEEIALHQEHIEKIEA--LDKWCKHLRILLLHSNIIS 95 (100)
Q Consensus 59 ~tLEElsLHQq~IEkIE~--L~~~CRnLkILYLQNNlIs 95 (100)
.+|++++|+.-.|..+.. ++ .|++|+.|+|++|.|+
T Consensus 129 ~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~ 166 (285)
T 1ozn_A 129 AALQYLYLQDNALQALPDDTFR-DLGNLTHLFLHGNRIS 166 (285)
T ss_dssp TTCCEEECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCC
T ss_pred cCCCEEECCCCcccccCHhHhc-cCCCccEEECCCCccc
Confidence 344444444444443321 22 3444444444444443
No 78
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=80.14 E-value=0.19 Score=37.42 Aligned_cols=14 Identities=43% Similarity=0.328 Sum_probs=6.0
Q ss_pred cchhhhhhhccCCc
Q psy10771 81 CKHLRILLLHSNII 94 (100)
Q Consensus 81 CRnLkILYLQNNlI 94 (100)
|++|+.|+|.+|.|
T Consensus 148 l~~L~~L~l~~n~l 161 (570)
T 2z63_A 148 LTNLEHLDLSSNKI 161 (570)
T ss_dssp CTTCCEEECTTSCC
T ss_pred cCCCCEEeCcCCcc
Confidence 34444444444443
No 79
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=79.97 E-value=0.092 Score=37.37 Aligned_cols=39 Identities=23% Similarity=0.324 Sum_probs=24.5
Q ss_pred cccchhhhhcchhhhhhHh--hHHHhcchhhhhhhccCCccc
Q psy10771 57 EIGTLEEIALHQEHIEKIE--ALDKWCKHLRILLLHSNIISK 96 (100)
Q Consensus 57 ~L~tLEElsLHQq~IEkIE--~L~~~CRnLkILYLQNNlIsk 96 (100)
...+|++++|+.-.|..+. .++ -|++|+.|+|++|.|+.
T Consensus 32 ~~~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~ 72 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQISAADLA-PFTKLELLNLSSNVLYE 72 (317)
T ss_dssp TGGGCSEEECTTSCCCCCCHHHHT-TCTTCCEEECTTSCCEE
T ss_pred cCCCCCEEECcCCccCcCCHHHhh-CCCcCCEEECCCCcCCc
Confidence 3456777777776666653 344 56677777777776653
No 80
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=79.88 E-value=0.28 Score=39.27 Aligned_cols=38 Identities=21% Similarity=0.347 Sum_probs=17.3
Q ss_pred ccchhhhhcchhhhhhHhhHHHhcchhhhhhhccCCccc
Q psy10771 58 IGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISK 96 (100)
Q Consensus 58 L~tLEElsLHQq~IEkIE~L~~~CRnLkILYLQNNlIsk 96 (100)
+.+|+.++|+.-.|..|..++ -|++|+.|+|++|.|+.
T Consensus 485 l~~L~~L~Ls~N~l~~lp~l~-~l~~L~~L~Ls~N~l~~ 522 (567)
T 1dce_A 485 LRCLEVLQASDNALENVDGVA-NLPRLQELLLCNNRLQQ 522 (567)
T ss_dssp CTTCCEEECCSSCCCCCGGGT-TCSSCCEEECCSSCCCS
T ss_pred CCCCCEEECCCCCCCCCcccC-CCCCCcEEECCCCCCCC
Confidence 344444444444444444333 34444444444444443
No 81
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=79.59 E-value=0.21 Score=35.52 Aligned_cols=39 Identities=10% Similarity=0.210 Sum_probs=22.8
Q ss_pred ccchhhhhcchhhhhhHh-hHHHhcchhhhhhhccCCcccc
Q psy10771 58 IGTLEEIALHQEHIEKIE-ALDKWCKHLRILLLHSNIISKL 97 (100)
Q Consensus 58 L~tLEElsLHQq~IEkIE-~L~~~CRnLkILYLQNNlIskI 97 (100)
+.+|++++|+.-.|..+. .+. .|++|+.|+|++|.|+.+
T Consensus 190 l~~L~~L~Ls~N~l~~l~~~~~-~l~~L~~L~L~~N~l~~l 229 (317)
T 3o53_A 190 FAKLKTLDLSSNKLAFMGPEFQ-SAAGVTWISLRNNKLVLI 229 (317)
T ss_dssp CTTCCEEECCSSCCCEECGGGG-GGTTCSEEECTTSCCCEE
T ss_pred cccCCEEECCCCcCCcchhhhc-ccCcccEEECcCCcccch
Confidence 556666666666555552 233 456666666666666544
No 82
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=79.58 E-value=0.24 Score=35.05 Aligned_cols=39 Identities=31% Similarity=0.517 Sum_probs=21.3
Q ss_pred ccchhhhhcchhhhhhHh-hHHHhcchhhhhhhccCCcccc
Q psy10771 58 IGTLEEIALHQEHIEKIE-ALDKWCKHLRILLLHSNIISKL 97 (100)
Q Consensus 58 L~tLEElsLHQq~IEkIE-~L~~~CRnLkILYLQNNlIskI 97 (100)
+.+|++++|+.-.|..|. .+. .|++|+.|+|++|.|+.+
T Consensus 240 l~~L~~L~L~~N~l~~lp~~l~-~l~~L~~L~l~~N~l~~~ 279 (332)
T 2ft3_A 240 LPTLRELHLDNNKLSRVPAGLP-DLKLLQVVYLHTNNITKV 279 (332)
T ss_dssp CTTCCEEECCSSCCCBCCTTGG-GCTTCCEEECCSSCCCBC
T ss_pred CCCCCEEECCCCcCeecChhhh-cCccCCEEECCCCCCCcc
Confidence 345555555555555553 233 455666666666666554
No 83
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=79.40 E-value=0.16 Score=37.96 Aligned_cols=37 Identities=14% Similarity=0.237 Sum_probs=17.3
Q ss_pred ccchhhhhcchhhhhhH---hhHHHhcchhhhhhhccCCcc
Q psy10771 58 IGTLEEIALHQEHIEKI---EALDKWCKHLRILLLHSNIIS 95 (100)
Q Consensus 58 L~tLEElsLHQq~IEkI---E~L~~~CRnLkILYLQNNlIs 95 (100)
+.+|++++|+.-.|..+ +.++ .+++|+.|+|.+|.|+
T Consensus 89 l~~L~~L~L~~N~l~~~~~p~~~~-~l~~L~~L~L~~n~l~ 128 (520)
T 2z7x_B 89 TVNLKHLDLSFNAFDALPICKEFG-NMSQLKFLGLSTTHLE 128 (520)
T ss_dssp CCCCSEEECCSSCCSSCCCCGGGG-GCTTCCEEEEEESSCC
T ss_pred cCCccEEeccCCccccccchhhhc-cCCcceEEEecCcccc
Confidence 44455555554444432 2333 4445555555555443
No 84
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=79.32 E-value=0.2 Score=37.50 Aligned_cols=62 Identities=18% Similarity=0.273 Sum_probs=38.2
Q ss_pred eeeccceehhhHHhHHHHHhhcccccccccchhhhhcchh-hhhh--HhhHHHhcchhhhhhhccCCcc
Q psy10771 30 VKLKKLSLFWTTVSEDLVRKRAEHNDKEIGTLEEIALHQE-HIEK--IEALDKWCKHLRILLLHSNIIS 95 (100)
Q Consensus 30 ~~~~~~~~~MvrIT~eLIRKraEHNe~~L~tLEElsLHQq-~IEk--IE~L~~~CRnLkILYLQNNlIs 95 (100)
-+|+.|.+....+|.+.+..=+. .+.+|++++|+.= .+.. +..+...|++|+.|+|++|.|+
T Consensus 105 ~~L~~L~L~~~~~~~~~~~~l~~----~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~ 169 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDDCLELIAK----SFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVD 169 (594)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHH----HCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEE
T ss_pred CCCCeEEeeCcEEcHHHHHHHHH----hCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccC
Confidence 35666666554555544332221 2568888888743 3333 5566667899999999988754
No 85
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=79.20 E-value=0.22 Score=37.13 Aligned_cols=37 Identities=24% Similarity=0.187 Sum_probs=21.0
Q ss_pred ccchhhhhcchhhhhhHhhHHHhcchhhhhhhccCCccc
Q psy10771 58 IGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISK 96 (100)
Q Consensus 58 L~tLEElsLHQq~IEkIE~L~~~CRnLkILYLQNNlIsk 96 (100)
+.+|++++|+.-.|..|... .|++|+.|+|.+|.|+.
T Consensus 68 l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L~~N~l~~ 104 (520)
T 2z7x_B 68 NQELEYLDLSHNKLVKISCH--PTVNLKHLDLSFNAFDA 104 (520)
T ss_dssp CTTCCEEECCSSCCCEEECC--CCCCCSEEECCSSCCSS
T ss_pred ccCCCEEecCCCceeecCcc--ccCCccEEeccCCcccc
Confidence 45566666665555555433 45666666666666554
No 86
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=78.97 E-value=0.28 Score=40.31 Aligned_cols=38 Identities=16% Similarity=0.460 Sum_probs=17.0
Q ss_pred ccchhhhhcchhhhhhH-hhHHHhcchhhhhhhccCCccc
Q psy10771 58 IGTLEEIALHQEHIEKI-EALDKWCKHLRILLLHSNIISK 96 (100)
Q Consensus 58 L~tLEElsLHQq~IEkI-E~L~~~CRnLkILYLQNNlIsk 96 (100)
+.+|+.|+|+.-.|..| +.++ -|++|+.|+|.+|.|+.
T Consensus 269 l~~L~~L~Ls~N~l~~lp~~~~-~l~~L~~L~L~~N~l~~ 307 (727)
T 4b8c_D 269 LSNLRVLDLSHNRLTSLPAELG-SCFQLKYFYFFDNMVTT 307 (727)
T ss_dssp GTTCCEEECTTSCCSSCCSSGG-GGTTCSEEECCSSCCCC
T ss_pred CCCCCEEeCcCCcCCccChhhc-CCCCCCEEECCCCCCCc
Confidence 34444444444444444 2233 34445555555554443
No 87
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=78.60 E-value=0.2 Score=34.63 Aligned_cols=40 Identities=20% Similarity=0.452 Sum_probs=26.4
Q ss_pred cccchhhhhcchhhhhhHhh--HHHhcchhhhhhhccCCcccc
Q psy10771 57 EIGTLEEIALHQEHIEKIEA--LDKWCKHLRILLLHSNIISKL 97 (100)
Q Consensus 57 ~L~tLEElsLHQq~IEkIE~--L~~~CRnLkILYLQNNlIskI 97 (100)
.+.+|++++|+.-.|..+.. ++ -+++|+.|+|++|.|+.+
T Consensus 155 ~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~ 196 (270)
T 2o6q_A 155 KLTSLKELRLYNNQLKRVPEGAFD-KLTELKTLKLDNNQLKRV 196 (270)
T ss_dssp TCTTCCEEECCSSCCSCCCTTTTT-TCTTCCEEECCSSCCSCC
T ss_pred CCcccceeEecCCcCcEeChhHhc-cCCCcCEEECCCCcCCcC
Confidence 35667777777666666643 33 467777777777777654
No 88
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=78.10 E-value=0.23 Score=36.99 Aligned_cols=37 Identities=24% Similarity=0.415 Sum_probs=16.8
Q ss_pred chhhhhcchhhhhhH--hhHHHhcchhhhhhhccCCcccc
Q psy10771 60 TLEEIALHQEHIEKI--EALDKWCKHLRILLLHSNIISKL 97 (100)
Q Consensus 60 tLEElsLHQq~IEkI--E~L~~~CRnLkILYLQNNlIskI 97 (100)
++++++|+.-+|..+ +.++ -|++|+.|+|++|.|+.+
T Consensus 76 ~l~~L~L~~n~i~~~~~~~~~-~l~~L~~L~Ls~n~i~~~ 114 (452)
T 3zyi_A 76 NTRYLNLMENNIQMIQADTFR-HLHHLEVLQLGRNSIRQI 114 (452)
T ss_dssp TCSEEECCSSCCCEECTTTTT-TCTTCCEEECCSSCCCEE
T ss_pred CccEEECcCCcCceECHHHcC-CCCCCCEEECCCCccCCc
Confidence 344455554444444 2233 344444445544444433
No 89
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=78.03 E-value=0.25 Score=34.36 Aligned_cols=13 Identities=31% Similarity=0.322 Sum_probs=5.3
Q ss_pred chhhhhhhccCCc
Q psy10771 82 KHLRILLLHSNII 94 (100)
Q Consensus 82 RnLkILYLQNNlI 94 (100)
++|+.|+|++|.|
T Consensus 223 ~~L~~L~L~~N~l 235 (306)
T 2z66_A 223 NSLQVLDYSLNHI 235 (306)
T ss_dssp TTCCEEECTTSCC
T ss_pred ccCCEeECCCCCC
Confidence 3444444444433
No 90
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=78.00 E-value=0.23 Score=33.09 Aligned_cols=42 Identities=24% Similarity=0.401 Sum_probs=32.9
Q ss_pred ccccchhhhhcchhhhhhHh--hHHHhcchhhhhhhccCCccccc
Q psy10771 56 KEIGTLEEIALHQEHIEKIE--ALDKWCKHLRILLLHSNIISKLG 98 (100)
Q Consensus 56 ~~L~tLEElsLHQq~IEkIE--~L~~~CRnLkILYLQNNlIskIE 98 (100)
+.+.+|++++|+.-.|..+. .++ .+++|+.|+|++|.|+.+.
T Consensus 51 ~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~ 94 (192)
T 1w8a_A 51 GRLPHLVKLELKRNQLTGIEPNAFE-GASHIQELQLGENKIKEIS 94 (192)
T ss_dssp GGCTTCCEEECCSSCCCCBCTTTTT-TCTTCCEEECCSCCCCEEC
T ss_pred ccCCCCCEEECCCCCCCCcCHhHcC-CcccCCEEECCCCcCCccC
Confidence 45678888999888888873 455 6788999999999887654
No 91
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=77.75 E-value=0.23 Score=34.99 Aligned_cols=38 Identities=29% Similarity=0.445 Sum_probs=19.1
Q ss_pred cchhhhhcchhhhhhHh-hHHHhcchhhhhhhccCCcccc
Q psy10771 59 GTLEEIALHQEHIEKIE-ALDKWCKHLRILLLHSNIISKL 97 (100)
Q Consensus 59 ~tLEElsLHQq~IEkIE-~L~~~CRnLkILYLQNNlIskI 97 (100)
.+|++++|+.-.|..+. .+. .|++|+.|+|++|.|+.+
T Consensus 240 ~~L~~L~L~~N~l~~lp~~l~-~l~~L~~L~l~~N~i~~~ 278 (330)
T 1xku_A 240 PHLRELHLNNNKLVKVPGGLA-DHKYIQVVYLHNNNISAI 278 (330)
T ss_dssp TTCCEEECCSSCCSSCCTTTT-TCSSCCEEECCSSCCCCC
T ss_pred CCCCEEECCCCcCccCChhhc-cCCCcCEEECCCCcCCcc
Confidence 44555555555554442 233 445555555555555544
No 92
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=77.43 E-value=0.4 Score=33.41 Aligned_cols=63 Identities=14% Similarity=0.151 Sum_probs=36.3
Q ss_pred eeeeeccceehhhHHhHHHHHhhcccccccccchhhhhcchhhhhh--HhhHHHhcchhhhhhhccC-Ccc
Q psy10771 28 SFVKLKKLSLFWTTVSEDLVRKRAEHNDKEIGTLEEIALHQEHIEK--IEALDKWCKHLRILLLHSN-IIS 95 (100)
Q Consensus 28 ~~~~~~~~~~~MvrIT~eLIRKraEHNe~~L~tLEElsLHQq~IEk--IE~L~~~CRnLkILYLQNN-lIs 95 (100)
++.+|+.|.+-...++.+-+..-. +.+.+|++++|+.-.+.. .+.++ -|++|+.|.|.+| .++
T Consensus 91 ~~~~L~~L~L~~~~l~~~~~~~~~----~~~~~L~~L~L~~~~l~~~~~~~l~-~~~~L~~L~L~~~~~l~ 156 (336)
T 2ast_B 91 SPFRVQHMDLSNSVIEVSTLHGIL----SQCSKLQNLSLEGLRLSDPIVNTLA-KNSNLVRLNLSGCSGFS 156 (336)
T ss_dssp CCBCCCEEECTTCEECHHHHHHHH----TTBCCCSEEECTTCBCCHHHHHHHT-TCTTCSEEECTTCBSCC
T ss_pred cCCCCCEEEccCCCcCHHHHHHHH----hhCCCCCEEeCcCcccCHHHHHHHh-cCCCCCEEECCCCCCCC
Confidence 445666666665555544222211 234677777777665542 23455 3778888888777 454
No 93
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=77.16 E-value=0.25 Score=37.44 Aligned_cols=40 Identities=15% Similarity=0.208 Sum_probs=21.2
Q ss_pred cccchhhhhcchhhhhhH--hhHHHhcchhhhhhhccCCcccc
Q psy10771 57 EIGTLEEIALHQEHIEKI--EALDKWCKHLRILLLHSNIISKL 97 (100)
Q Consensus 57 ~L~tLEElsLHQq~IEkI--E~L~~~CRnLkILYLQNNlIskI 97 (100)
.+.+|++++|+.-.|..+ +.++ .|++|+.|+|.+|.|+.+
T Consensus 78 ~l~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~ 119 (606)
T 3vq2_A 78 GLHHLSNLILTGNPIQSFSPGSFS-GLTSLENLVAVETKLASL 119 (606)
T ss_dssp TCTTCCEEECTTCCCCCCCTTSST-TCTTCCEEECTTSCCCCS
T ss_pred chhhcCEeECCCCcccccChhhcC-CcccCCEEEccCCccccc
Confidence 345566666655555554 2343 455555555555555443
No 94
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=76.70 E-value=0.36 Score=34.85 Aligned_cols=39 Identities=26% Similarity=0.308 Sum_probs=20.5
Q ss_pred ccchhhhhcchhhhhhH--hhHHHhcchhhhhhhccCCcccc
Q psy10771 58 IGTLEEIALHQEHIEKI--EALDKWCKHLRILLLHSNIISKL 97 (100)
Q Consensus 58 L~tLEElsLHQq~IEkI--E~L~~~CRnLkILYLQNNlIskI 97 (100)
+.+|++++|+.-.|..+ +.++ .+++|+.|+|.+|.|+.+
T Consensus 247 l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~ 287 (390)
T 3o6n_A 247 YPGLVEVDLSYNELEKIMYHPFV-KMQRLERLYISNNRLVAL 287 (390)
T ss_dssp CTTCSEEECCSSCCCEEESGGGT-TCSSCCEEECCSSCCCEE
T ss_pred CCCccEEECCCCcCCCcChhHcc-ccccCCEEECCCCcCccc
Confidence 44555555555555544 2333 455666666666655443
No 95
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=76.68 E-value=0.21 Score=34.44 Aligned_cols=39 Identities=28% Similarity=0.481 Sum_probs=22.7
Q ss_pred ccchhhhhcchhhhhhHhh--HHHhcchhhhhhhccCCcccc
Q psy10771 58 IGTLEEIALHQEHIEKIEA--LDKWCKHLRILLLHSNIISKL 97 (100)
Q Consensus 58 L~tLEElsLHQq~IEkIE~--L~~~CRnLkILYLQNNlIskI 97 (100)
+.+|++++|+.-.|..+.. ++ .|++|+.|+|.+|.|+.+
T Consensus 152 l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~ 192 (285)
T 1ozn_A 152 LGNLTHLFLHGNRISSVPERAFR-GLHSLDRLLLHQNRVAHV 192 (285)
T ss_dssp CTTCCEEECCSSCCCEECTTTTT-TCTTCCEEECCSSCCCEE
T ss_pred CCCccEEECCCCcccccCHHHhc-CccccCEEECCCCccccc
Confidence 4566666666665655532 33 456666666666665543
No 96
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=76.47 E-value=0.44 Score=35.70 Aligned_cols=37 Identities=14% Similarity=0.151 Sum_probs=19.4
Q ss_pred ccchhhhhcchhhhhh--HhhHHHhcchhhhhhhccCCc
Q psy10771 58 IGTLEEIALHQEHIEK--IEALDKWCKHLRILLLHSNII 94 (100)
Q Consensus 58 L~tLEElsLHQq~IEk--IE~L~~~CRnLkILYLQNNlI 94 (100)
+.+|++++|+.-.|.. +..+...|++|+.|.|.+|.+
T Consensus 455 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~ 493 (594)
T 2p1m_B 455 AKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF 493 (594)
T ss_dssp CTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSC
T ss_pred chhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCC
Confidence 4456666665544422 223333466666666666655
No 97
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=76.36 E-value=0.17 Score=34.22 Aligned_cols=35 Identities=11% Similarity=0.076 Sum_probs=19.8
Q ss_pred hhhcchh-hhhhHhh--HHHhcchhh-hhhhccCCccccc
Q psy10771 63 EIALHQE-HIEKIEA--LDKWCKHLR-ILLLHSNIISKLG 98 (100)
Q Consensus 63 ElsLHQq-~IEkIE~--L~~~CRnLk-ILYLQNNlIskIE 98 (100)
+++|+.- .|..|.. ++ -|++|+ .|+|++|.|+.|.
T Consensus 134 ~L~l~~N~~l~~i~~~~~~-~l~~L~~~L~l~~n~l~~i~ 172 (239)
T 2xwt_C 134 ILEITDNPYMTSIPVNAFQ-GLCNETLTLKLYNNGFTSVQ 172 (239)
T ss_dssp EEEEESCTTCCEECTTTTT-TTBSSEEEEECCSCCCCEEC
T ss_pred EEECCCCcchhhcCccccc-chhcceeEEEcCCCCCcccC
Confidence 5555554 5555532 33 466666 6777666666543
No 98
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=75.93 E-value=0.29 Score=37.49 Aligned_cols=39 Identities=18% Similarity=0.241 Sum_probs=20.6
Q ss_pred cccchhhhhcchhhhhhHhhHHHhcchhhhhhhccCCcccc
Q psy10771 57 EIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL 97 (100)
Q Consensus 57 ~L~tLEElsLHQq~IEkIE~L~~~CRnLkILYLQNNlIskI 97 (100)
.+.+|++++|+.-.|..++ ++ -|++|+.|+|.+|.|+.+
T Consensus 83 ~l~~L~~L~Ls~N~l~~~~-~~-~l~~L~~L~L~~N~l~~l 121 (457)
T 3bz5_A 83 QNTNLTYLACDSNKLTNLD-VT-PLTKLTYLNCDTNKLTKL 121 (457)
T ss_dssp TCTTCSEEECCSSCCSCCC-CT-TCTTCCEEECCSSCCSCC
T ss_pred cCCCCCEEECcCCCCceee-cC-CCCcCCEEECCCCcCCee
Confidence 3455555555555555543 33 455566666666655443
No 99
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=75.69 E-value=0.32 Score=36.90 Aligned_cols=38 Identities=34% Similarity=0.316 Sum_probs=16.6
Q ss_pred ccchhhhhcchhhhhhHh--hHHHhcchhhhhhhccCCccc
Q psy10771 58 IGTLEEIALHQEHIEKIE--ALDKWCKHLRILLLHSNIISK 96 (100)
Q Consensus 58 L~tLEElsLHQq~IEkIE--~L~~~CRnLkILYLQNNlIsk 96 (100)
+.+|++++|+.-.|..++ .++ .|++|+.|+|.+|.|+.
T Consensus 104 l~~L~~L~L~~n~i~~l~~~~~~-~l~~L~~L~L~~n~l~~ 143 (606)
T 3t6q_A 104 PKALKHLFFIQTGISSIDFIPLH-NQKTLESLYLGSNHISS 143 (606)
T ss_dssp CTTCCEEECTTSCCSCGGGSCCT-TCTTCCEEECCSSCCCC
T ss_pred cccccEeeccccCcccCCcchhc-cCCcccEEECCCCcccc
Confidence 344444444444444431 222 34444444444444443
No 100
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=75.62 E-value=0.33 Score=36.20 Aligned_cols=40 Identities=10% Similarity=0.240 Sum_probs=22.8
Q ss_pred cccchhhhhcchhhhhhHhhHHHhcchhhhhhhccCCcccc
Q psy10771 57 EIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL 97 (100)
Q Consensus 57 ~L~tLEElsLHQq~IEkIE~L~~~CRnLkILYLQNNlIskI 97 (100)
.+.+|++++|+.=.|..|.... .+++|+.|+|.+|.|+.+
T Consensus 449 ~l~~L~~L~Ls~N~l~~ip~~~-~l~~L~~L~Ls~N~l~~~ 488 (549)
T 2z81_A 449 FLPRLQELYISRNKLKTLPDAS-LFPVLLVMKISRNQLKSV 488 (549)
T ss_dssp CCTTCCEEECCSSCCSSCCCGG-GCTTCCEEECCSSCCCCC
T ss_pred cCChhcEEECCCCccCcCCCcc-cCccCCEEecCCCccCCc
Confidence 3455666666665555554433 456666666666665543
No 101
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=75.59 E-value=0.41 Score=34.80 Aligned_cols=38 Identities=24% Similarity=0.371 Sum_probs=18.5
Q ss_pred ccchhhhhcchhhhhhHhh---HHHhcchhhhhhhccCCccc
Q psy10771 58 IGTLEEIALHQEHIEKIEA---LDKWCKHLRILLLHSNIISK 96 (100)
Q Consensus 58 L~tLEElsLHQq~IEkIE~---L~~~CRnLkILYLQNNlIsk 96 (100)
+.+|++++|+.-.|..+.. ++ -|++|+.|+|.+|.|+.
T Consensus 128 l~~L~~L~L~~n~l~~~~~~~~~~-~l~~L~~L~L~~n~l~~ 168 (455)
T 3v47_A 128 LTSLEMLVLRDNNIKKIQPASFFL-NMRRFHVLDLTFNKVKS 168 (455)
T ss_dssp CTTCCEEECCSSBCCSCCCCGGGG-GCTTCCEEECTTCCBSC
T ss_pred cccCCEEECCCCccCccCcccccC-CCCcccEEeCCCCcccc
Confidence 4455555555555544421 22 45555555555555543
No 102
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=75.18 E-value=0.46 Score=34.47 Aligned_cols=14 Identities=29% Similarity=0.278 Sum_probs=8.0
Q ss_pred cchhhhhhhccCCc
Q psy10771 81 CKHLRILLLHSNII 94 (100)
Q Consensus 81 CRnLkILYLQNNlI 94 (100)
|++|+.|+|.+|.|
T Consensus 283 ~~~L~~L~Ls~n~i 296 (461)
T 1z7x_W 283 KESLKELSLAGNEL 296 (461)
T ss_dssp CTTCCEEECTTCCC
T ss_pred CCCcceEECCCCCC
Confidence 55555555555554
No 103
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=74.92 E-value=0.55 Score=34.08 Aligned_cols=38 Identities=21% Similarity=0.160 Sum_probs=23.3
Q ss_pred ccchhhhhcchhhhh-----hHh-hHHHhcchhhhhhhccCCccc
Q psy10771 58 IGTLEEIALHQEHIE-----KIE-ALDKWCKHLRILLLHSNIISK 96 (100)
Q Consensus 58 L~tLEElsLHQq~IE-----kIE-~L~~~CRnLkILYLQNNlIsk 96 (100)
..+|++++|+.-.|. .+. .+. .|++|+.|+|.+|.|+.
T Consensus 369 ~~~L~~L~L~~n~i~~~~~~~l~~~l~-~~~~L~~L~l~~N~i~~ 412 (461)
T 1z7x_W 369 GSVLRVLWLADCDVSDSSCSSLAATLL-ANHSLRELDLSNNCLGD 412 (461)
T ss_dssp TCCCCEEECTTSCCCHHHHHHHHHHHH-HCCCCCEEECCSSSCCH
T ss_pred CCceEEEECCCCCCChhhHHHHHHHHH-hCCCccEEECCCCCCCH
Confidence 346777776655554 332 233 47777777777777653
No 104
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=74.64 E-value=0.32 Score=37.56 Aligned_cols=38 Identities=26% Similarity=0.500 Sum_probs=17.4
Q ss_pred ccchhhhhcchhhhhhHhh--HHHhcchhhhhhhccCCccc
Q psy10771 58 IGTLEEIALHQEHIEKIEA--LDKWCKHLRILLLHSNIISK 96 (100)
Q Consensus 58 L~tLEElsLHQq~IEkIE~--L~~~CRnLkILYLQNNlIsk 96 (100)
+.+|++++|+.-.|..|.. ++ .|++|+.|+|.+|.|+.
T Consensus 72 l~~L~~L~L~~n~l~~l~~~~~~-~l~~L~~L~L~~n~l~~ 111 (680)
T 1ziw_A 72 LPMLKVLNLQHNELSQLSDKTFA-FCTNLTELHLMSNSIQK 111 (680)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTT-TCTTCSEEECCSSCCCC
T ss_pred ccCcCEEECCCCccCccChhhhc-cCCCCCEEECCCCccCc
Confidence 3444455554444444432 33 44555555555554443
No 105
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=74.59 E-value=0.32 Score=36.91 Aligned_cols=40 Identities=33% Similarity=0.390 Sum_probs=32.3
Q ss_pred cccchhhhhcchhhhhhHh--hHHHhcchhhhhhhccCCcccc
Q psy10771 57 EIGTLEEIALHQEHIEKIE--ALDKWCKHLRILLLHSNIISKL 97 (100)
Q Consensus 57 ~L~tLEElsLHQq~IEkIE--~L~~~CRnLkILYLQNNlIskI 97 (100)
-+.+|++++|+.-.|..|. .++ .|++|+.|+|++|.|+.+
T Consensus 54 ~l~~L~~L~Ls~n~l~~i~~~~~~-~l~~L~~L~Ls~n~l~~~ 95 (606)
T 3vq2_A 54 NFSELQWLDLSRCEIETIEDKAWH-GLHHLSNLILTGNPIQSF 95 (606)
T ss_dssp TCTTCCEEECTTCCCCEECTTTTT-TCTTCCEEECTTCCCCCC
T ss_pred CCccCcEEeCCCCcccccCHHHhh-chhhcCEeECCCCccccc
Confidence 4678899999988888874 355 789999999999988766
No 106
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=74.55 E-value=0.57 Score=34.95 Aligned_cols=40 Identities=23% Similarity=0.311 Sum_probs=21.9
Q ss_pred cccchhhhhcchhhhhhHhh----HHHhcchhhhhhhccCCcccc
Q psy10771 57 EIGTLEEIALHQEHIEKIEA----LDKWCKHLRILLLHSNIISKL 97 (100)
Q Consensus 57 ~L~tLEElsLHQq~IEkIE~----L~~~CRnLkILYLQNNlIskI 97 (100)
.+.+|++++|+.-.|..+.. ++ .|++|+.|+|++|.|+.|
T Consensus 359 ~l~~L~~L~Ls~N~l~~~~~~~~~~~-~l~~L~~L~Ls~N~l~~l 402 (549)
T 2z81_A 359 AWPSLQTLVLSQNHLRSMQKTGEILL-TLKNLTSLDISRNTFHPM 402 (549)
T ss_dssp SSTTCCEEECTTSCCCCHHHHHHHGG-GCTTCCEEECTTCCCCCC
T ss_pred ccccCcEEEccCCcccccccchhhhh-cCCCCCEEECCCCCCccC
Confidence 34556666666655554432 33 456666666666655543
No 107
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=74.44 E-value=0.34 Score=37.02 Aligned_cols=35 Identities=23% Similarity=0.208 Sum_probs=13.8
Q ss_pred cchhhhhcchhhhhhHhhHHHhcchhhhhhhccCCcc
Q psy10771 59 GTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIIS 95 (100)
Q Consensus 59 ~tLEElsLHQq~IEkIE~L~~~CRnLkILYLQNNlIs 95 (100)
.+|++++|+.-.|..|..- .+++|+.|+|.+|.|+
T Consensus 100 ~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~l~ 134 (562)
T 3a79_B 100 QDLEYLDVSHNRLQNISCC--PMASLRHLDLSFNDFD 134 (562)
T ss_dssp TTCCEEECTTSCCCEECSC--CCTTCSEEECCSSCCS
T ss_pred CCCCEEECCCCcCCccCcc--ccccCCEEECCCCCcc
Confidence 3344444444333333222 2344444444444443
No 108
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=74.31 E-value=0.51 Score=31.79 Aligned_cols=16 Identities=38% Similarity=0.364 Sum_probs=8.2
Q ss_pred hcchhhhhhhccCCcc
Q psy10771 80 WCKHLRILLLHSNIIS 95 (100)
Q Consensus 80 ~CRnLkILYLQNNlIs 95 (100)
.+++|+.|+|.+|.|+
T Consensus 91 ~n~~L~~L~L~~N~i~ 106 (185)
T 1io0_A 91 VNNTLKSLNVESNFIS 106 (185)
T ss_dssp HCSSCCEEECCSSCCC
T ss_pred hCCCcCEEECcCCcCC
Confidence 3445555555555543
No 109
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=74.24 E-value=0.31 Score=37.23 Aligned_cols=39 Identities=13% Similarity=0.215 Sum_probs=24.6
Q ss_pred cccchhhhhcchhhhhhHh---hHHHhcchhhhhhhccCCccc
Q psy10771 57 EIGTLEEIALHQEHIEKIE---ALDKWCKHLRILLLHSNIISK 96 (100)
Q Consensus 57 ~L~tLEElsLHQq~IEkIE---~L~~~CRnLkILYLQNNlIsk 96 (100)
.+.+|++++|+.-.|..+. .++ -+++|+.|+|++|.|+.
T Consensus 119 ~l~~L~~L~Ls~N~l~~l~~p~~~~-~l~~L~~L~L~~n~l~~ 160 (562)
T 3a79_B 119 PMASLRHLDLSFNDFDVLPVCKEFG-NLTKLTFLGLSAAKFRQ 160 (562)
T ss_dssp CCTTCSEEECCSSCCSBCCCCGGGG-GCTTCCEEEEECSBCCT
T ss_pred ccccCCEEECCCCCccccCchHhhc-ccCcccEEecCCCcccc
Confidence 4666777777766666553 344 56677777777776653
No 110
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=74.23 E-value=0.85 Score=32.96 Aligned_cols=37 Identities=14% Similarity=0.146 Sum_probs=19.0
Q ss_pred chhhhhcchhhhhh-----H-hhHHHhcchhhhhhhccCCccc
Q psy10771 60 TLEEIALHQEHIEK-----I-EALDKWCKHLRILLLHSNIISK 96 (100)
Q Consensus 60 tLEElsLHQq~IEk-----I-E~L~~~CRnLkILYLQNNlIsk 96 (100)
+|++++|+.-.|.. + +.+...|++|+.|+|.+|.|+.
T Consensus 197 ~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 239 (362)
T 3goz_A 197 SVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHG 239 (362)
T ss_dssp TCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCC
T ss_pred CCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCc
Confidence 55555555555544 2 1233334556666666665543
No 111
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=74.22 E-value=0.63 Score=32.94 Aligned_cols=41 Identities=22% Similarity=0.186 Sum_probs=23.0
Q ss_pred ccccchhhhhcchhhhhhHhhH----HHhcchhhhhhhccCCccc
Q psy10771 56 KEIGTLEEIALHQEHIEKIEAL----DKWCKHLRILLLHSNIISK 96 (100)
Q Consensus 56 ~~L~tLEElsLHQq~IEkIE~L----~~~CRnLkILYLQNNlIsk 96 (100)
+.+.+|++++|+.-.|..+..+ ...+++|+.|+|++|.|+.
T Consensus 198 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~ 242 (312)
T 1wwl_A 198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRD 242 (312)
T ss_dssp TSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCS
T ss_pred ccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCc
Confidence 3456666666666666544322 2234666666666666654
No 112
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=73.71 E-value=0.51 Score=35.59 Aligned_cols=35 Identities=23% Similarity=0.263 Sum_probs=14.5
Q ss_pred chhhhhcchhhhhh--HhhHHHhcchhhhhhhccCCc
Q psy10771 60 TLEEIALHQEHIEK--IEALDKWCKHLRILLLHSNII 94 (100)
Q Consensus 60 tLEElsLHQq~IEk--IE~L~~~CRnLkILYLQNNlI 94 (100)
+|++++|+.-.|.. +..+...+++|+.|+|++|.|
T Consensus 102 ~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l 138 (372)
T 3un9_A 102 ALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSL 138 (372)
T ss_dssp CEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCC
T ss_pred CceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCC
Confidence 44444444444322 223333344444444444444
No 113
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=73.57 E-value=0.35 Score=35.74 Aligned_cols=41 Identities=29% Similarity=0.374 Sum_probs=31.6
Q ss_pred cccchhhhhcchhhhhhHh--hHHHhcchhhhhhhccCCccccc
Q psy10771 57 EIGTLEEIALHQEHIEKIE--ALDKWCKHLRILLLHSNIISKLG 98 (100)
Q Consensus 57 ~L~tLEElsLHQq~IEkIE--~L~~~CRnLkILYLQNNlIskIE 98 (100)
.+.+|++++|+.-.|..+. .++ -|++|+.|+|.+|.|+.+.
T Consensus 54 ~l~~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~L~~n~l~~~~ 96 (477)
T 2id5_A 54 SFPHLEELELNENIVSAVEPGAFN-NLFNLRTLGLRSNRLKLIP 96 (477)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTT-TCTTCCEEECCSSCCCSCC
T ss_pred CCCCCCEEECCCCccCEeChhhhh-CCccCCEEECCCCcCCccC
Confidence 3678888888888887773 455 6888999999988887653
No 114
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=73.14 E-value=0.36 Score=34.93 Aligned_cols=37 Identities=14% Similarity=0.275 Sum_probs=16.4
Q ss_pred ccchhhhhcchhhhhhHh-hHHHhcchhhhhhhccCCcc
Q psy10771 58 IGTLEEIALHQEHIEKIE-ALDKWCKHLRILLLHSNIIS 95 (100)
Q Consensus 58 L~tLEElsLHQq~IEkIE-~L~~~CRnLkILYLQNNlIs 95 (100)
+..|++++|+.-.|..|. .++ .|++|+.|+|.+|.|+
T Consensus 103 l~~L~~L~L~~n~l~~lp~~~~-~l~~L~~L~Ls~n~l~ 140 (328)
T 4fcg_A 103 LSHLQHMTIDAAGLMELPDTMQ-QFAGLETLTLARNPLR 140 (328)
T ss_dssp GTTCSEEEEESSCCCCCCSCGG-GGTTCSEEEEESCCCC
T ss_pred CCCCCEEECCCCCccchhHHHh-ccCCCCEEECCCCccc
Confidence 334444444444444332 233 3444555555554444
No 115
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=72.91 E-value=0.77 Score=33.15 Aligned_cols=15 Identities=33% Similarity=0.292 Sum_probs=7.5
Q ss_pred cchhhhhhhccCCcc
Q psy10771 81 CKHLRILLLHSNIIS 95 (100)
Q Consensus 81 CRnLkILYLQNNlIs 95 (100)
|++|+.|+|++|.|+
T Consensus 302 l~~L~~L~l~~N~l~ 316 (386)
T 2ca6_A 302 MPDLLFLELNGNRFS 316 (386)
T ss_dssp CTTCCEEECTTSBSC
T ss_pred CCCceEEEccCCcCC
Confidence 455555555555444
No 116
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=72.36 E-value=0.38 Score=36.52 Aligned_cols=40 Identities=23% Similarity=0.223 Sum_probs=23.7
Q ss_pred cccchhhhhcchhhhhhHh--hHHHhcchhhhhhhccCCcccc
Q psy10771 57 EIGTLEEIALHQEHIEKIE--ALDKWCKHLRILLLHSNIISKL 97 (100)
Q Consensus 57 ~L~tLEElsLHQq~IEkIE--~L~~~CRnLkILYLQNNlIskI 97 (100)
.+.+|++++|+.-.|..+. .++ .|++|+.|+|.+|.|+.+
T Consensus 79 ~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~n~i~~l 120 (606)
T 3t6q_A 79 SQHRLDTLVLTANPLIFMAETALS-GPKALKHLFFIQTGISSI 120 (606)
T ss_dssp TCTTCCEEECTTCCCSEECTTTTS-SCTTCCEEECTTSCCSCG
T ss_pred CccccCeeeCCCCcccccChhhhc-ccccccEeeccccCcccC
Confidence 3556666666665555542 244 566666666666666654
No 117
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=72.33 E-value=0.44 Score=35.47 Aligned_cols=37 Identities=19% Similarity=0.390 Sum_probs=17.3
Q ss_pred ccchhhhhcchhhhhhHhh--HHHhcchhhhhhhccCCcc
Q psy10771 58 IGTLEEIALHQEHIEKIEA--LDKWCKHLRILLLHSNIIS 95 (100)
Q Consensus 58 L~tLEElsLHQq~IEkIE~--L~~~CRnLkILYLQNNlIs 95 (100)
+.+|++++|+.-.|..+.. ++ .|++|+.|+|.+|.|+
T Consensus 99 l~~L~~L~L~~n~l~~l~~~~~~-~l~~L~~L~L~~n~l~ 137 (570)
T 2z63_A 99 LSSLQKLVAVETNLASLENFPIG-HLKTLKELNVAHNLIQ 137 (570)
T ss_dssp CTTCCEEECTTSCCCCSTTCSCT-TCTTCCEEECCSSCCC
T ss_pred ccccccccccccccccCCCcccc-ccccccEEecCCCccc
Confidence 3444444444444444432 33 4555555555555544
No 118
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=72.03 E-value=0.67 Score=38.04 Aligned_cols=40 Identities=20% Similarity=0.327 Sum_probs=24.4
Q ss_pred cccchhhhhcchhhhhhHh-hHHHhcchhhhhhhccCCcccc
Q psy10771 57 EIGTLEEIALHQEHIEKIE-ALDKWCKHLRILLLHSNIISKL 97 (100)
Q Consensus 57 ~L~tLEElsLHQq~IEkIE-~L~~~CRnLkILYLQNNlIskI 97 (100)
.+.+|++|+|+.-.|..|- .++ -|++|+.|+|.+|.|+.|
T Consensus 245 ~l~~L~~L~Ls~N~l~~lp~~~~-~l~~L~~L~Ls~N~l~~l 285 (727)
T 4b8c_D 245 KYDFLTRLYLNGNSLTELPAEIK-NLSNLRVLDLSHNRLTSL 285 (727)
T ss_dssp GCCSCSCCBCTTSCCSCCCGGGG-GGTTCCEEECTTSCCSSC
T ss_pred CCCCCCEEEeeCCcCcccChhhh-CCCCCCEEeCcCCcCCcc
Confidence 4566666666666666553 344 566666777776666544
No 119
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=71.83 E-value=0.43 Score=36.88 Aligned_cols=39 Identities=21% Similarity=0.270 Sum_probs=18.9
Q ss_pred ccchhhhhcchhhhhhHhh--HHHhcchhhhhhhccCCcccc
Q psy10771 58 IGTLEEIALHQEHIEKIEA--LDKWCKHLRILLLHSNIISKL 97 (100)
Q Consensus 58 L~tLEElsLHQq~IEkIE~--L~~~CRnLkILYLQNNlIskI 97 (100)
+.+|++++|+.-.|..|.. ++ -|++|+.|+|.+|.|+.+
T Consensus 535 l~~L~~L~L~~N~l~~i~~~~~~-~l~~L~~L~Ls~N~l~~l 575 (680)
T 1ziw_A 535 LSHLHILNLESNGFDEIPVEVFK-DLFELKIIDLGLNNLNTL 575 (680)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCCCC
T ss_pred CCCCCEEECCCCCCCCCCHHHcc-cccCcceeECCCCCCCcC
Confidence 3445555555444444431 22 455555555555555443
No 120
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=71.41 E-value=0.38 Score=33.40 Aligned_cols=40 Identities=15% Similarity=0.091 Sum_probs=26.8
Q ss_pred cccchhhhhcchhhhhhHh----hHHHhcchhhhhhhccCCcccc
Q psy10771 57 EIGTLEEIALHQEHIEKIE----ALDKWCKHLRILLLHSNIISKL 97 (100)
Q Consensus 57 ~L~tLEElsLHQq~IEkIE----~L~~~CRnLkILYLQNNlIskI 97 (100)
.+.+|++++|+.-.|..++ .+. .+++|+.|+|++|.|+.+
T Consensus 50 ~l~~L~~L~L~~n~l~~~~~~~~~~~-~~~~L~~L~Ls~n~i~~l 93 (306)
T 2z66_A 50 KLTQLTKLSLSSNGLSFKGCCSQSDF-GTTSLKYLDLSFNGVITM 93 (306)
T ss_dssp TCTTCSEEECCSSCCCEEEEEEHHHH-SCSCCCEEECCSCSEEEE
T ss_pred ccccCCEEECCCCccCcccCcccccc-cccccCEEECCCCccccC
Confidence 4567778888777666552 222 477888888888877654
No 121
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=70.90 E-value=0.36 Score=34.90 Aligned_cols=36 Identities=14% Similarity=0.122 Sum_probs=27.1
Q ss_pred cchhhhhcchhhhhhHh--hHHHhcchhhhhhhccCCcc
Q psy10771 59 GTLEEIALHQEHIEKIE--ALDKWCKHLRILLLHSNIIS 95 (100)
Q Consensus 59 ~tLEElsLHQq~IEkIE--~L~~~CRnLkILYLQNNlIs 95 (100)
.+++++.|+.-.|..|. .++ -+++|+.|+|++|.|.
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~-~l~~L~~L~Ls~N~i~ 67 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFS-GFGDLEKIEISQNDVL 67 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSST-TCTTCCEEEEECCTTC
T ss_pred CCCCEEEccCCcCCCcCHHHHc-CCCCCCEEECcCCCCC
Confidence 56788888888888774 244 6788888888888773
No 122
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=70.70 E-value=0.61 Score=35.91 Aligned_cols=39 Identities=21% Similarity=0.261 Sum_probs=20.5
Q ss_pred ccchhhhhcchhhhhhHh--hHHHhcchhhhhhhccCCccc
Q psy10771 58 IGTLEEIALHQEHIEKIE--ALDKWCKHLRILLLHSNIISK 96 (100)
Q Consensus 58 L~tLEElsLHQq~IEkIE--~L~~~CRnLkILYLQNNlIsk 96 (100)
+.+|++++|+.-.|..+. .+...|++|+.|+|++|.|+.
T Consensus 143 l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~ 183 (487)
T 3oja_A 143 RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (487)
T ss_dssp GSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred CCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc
Confidence 455666666655555432 233345556666666665543
No 123
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=70.56 E-value=1.3 Score=32.01 Aligned_cols=14 Identities=29% Similarity=0.111 Sum_probs=7.2
Q ss_pred chhhhhhhccCCcc
Q psy10771 82 KHLRILLLHSNIIS 95 (100)
Q Consensus 82 RnLkILYLQNNlIs 95 (100)
++|+.|+|.+|.|+
T Consensus 109 ~~L~~L~Ls~N~l~ 122 (362)
T 3goz_A 109 FTITVLDLGWNDFS 122 (362)
T ss_dssp TTCCEEECCSSCGG
T ss_pred CCccEEECcCCcCC
Confidence 45555555555544
No 124
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=70.01 E-value=0.49 Score=34.19 Aligned_cols=38 Identities=16% Similarity=0.267 Sum_probs=18.3
Q ss_pred ccchhhhhcchhhhhhHh-hHHHhcchhhhhhhccCCccc
Q psy10771 58 IGTLEEIALHQEHIEKIE-ALDKWCKHLRILLLHSNIISK 96 (100)
Q Consensus 58 L~tLEElsLHQq~IEkIE-~L~~~CRnLkILYLQNNlIsk 96 (100)
+.+|++++|+.-.|..|. .++ -|++|+.|+|.+|.|+.
T Consensus 182 l~~L~~L~L~~n~l~~lp~~l~-~l~~L~~L~L~~N~l~~ 220 (328)
T 4fcg_A 182 LVNLQSLRLEWTGIRSLPASIA-NLQNLKSLKIRNSPLSA 220 (328)
T ss_dssp STTCCEEEEEEECCCCCCGGGG-GCTTCCEEEEESSCCCC
T ss_pred CCCCCEEECcCCCcCcchHhhc-CCCCCCEEEccCCCCCc
Confidence 444555555554444442 233 34555555555555543
No 125
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=69.63 E-value=0.77 Score=34.33 Aligned_cols=40 Identities=23% Similarity=0.270 Sum_probs=33.1
Q ss_pred cccchhhhhcchhhhhhHhhHHHhcc-hhhhhhhccCCccc
Q psy10771 57 EIGTLEEIALHQEHIEKIEALDKWCK-HLRILLLHSNIISK 96 (100)
Q Consensus 57 ~L~tLEElsLHQq~IEkIE~L~~~CR-nLkILYLQNNlIsk 96 (100)
.+.+|+.|+|+.-.|..++.++.+-. +|+.|+|.+|.|+.
T Consensus 194 ~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~~ 234 (267)
T 3rw6_A 194 KAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCD 234 (267)
T ss_dssp HSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTGG
T ss_pred hCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCcc
Confidence 57789999999999988877774432 89999999999863
No 126
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=67.91 E-value=0.57 Score=38.31 Aligned_cols=15 Identities=20% Similarity=0.355 Sum_probs=6.0
Q ss_pred cchhhhhhhccCCcc
Q psy10771 81 CKHLRILLLHSNIIS 95 (100)
Q Consensus 81 CRnLkILYLQNNlIs 95 (100)
|++|+.|+|.+|.|+
T Consensus 240 l~~L~~L~Ls~N~L~ 254 (622)
T 3g06_A 240 PSELKELMVSGNRLT 254 (622)
T ss_dssp CTTCCEEECCSSCCS
T ss_pred CCcCcEEECCCCCCC
Confidence 334444444444333
No 127
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=67.75 E-value=0.39 Score=37.00 Aligned_cols=38 Identities=11% Similarity=0.191 Sum_probs=19.6
Q ss_pred ccchhhhhcchhhhhhHh-hHHHhcchhhhhhhccCCccc
Q psy10771 58 IGTLEEIALHQEHIEKIE-ALDKWCKHLRILLLHSNIISK 96 (100)
Q Consensus 58 L~tLEElsLHQq~IEkIE-~L~~~CRnLkILYLQNNlIsk 96 (100)
+.+|+.++|+.-.|..+. .++ .|++|+.|+|.+|.|+.
T Consensus 190 l~~L~~L~Ls~N~l~~~~~~~~-~l~~L~~L~Ls~N~l~~ 228 (487)
T 3oja_A 190 FAKLKTLDLSSNKLAFMGPEFQ-SAAGVTWISLRNNKLVL 228 (487)
T ss_dssp CTTCCEEECCSSCCCEECGGGG-GGTTCSEEECTTSCCCE
T ss_pred CCCCCEEECCCCCCCCCCHhHc-CCCCccEEEecCCcCcc
Confidence 455555555555554442 233 44555666666655544
No 128
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=67.02 E-value=1.4 Score=32.98 Aligned_cols=37 Identities=16% Similarity=0.271 Sum_probs=19.1
Q ss_pred cchhhhhcchhhh-----hhHhhHHHhcchhhhhhhccCCcc
Q psy10771 59 GTLEEIALHQEHI-----EKIEALDKWCKHLRILLLHSNIIS 95 (100)
Q Consensus 59 ~tLEElsLHQq~I-----EkIE~L~~~CRnLkILYLQNNlIs 95 (100)
.+|++++|+.-.+ +.+..+-..|++|+.|.|.+|.+.
T Consensus 192 ~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~ 233 (592)
T 3ogk_B 192 TSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEIL 233 (592)
T ss_dssp CCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGG
T ss_pred CCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHH
Confidence 3444444443333 244444445666666666666543
No 129
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=66.05 E-value=0.64 Score=35.55 Aligned_cols=39 Identities=26% Similarity=0.297 Sum_probs=26.7
Q ss_pred ccchhhhhcchhhhhhHhhHHHhcchhhhhhhccCCcccc
Q psy10771 58 IGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL 97 (100)
Q Consensus 58 L~tLEElsLHQq~IEkIE~L~~~CRnLkILYLQNNlIskI 97 (100)
..+|++++|+.-.+..+..++ .|++|+.|+|++|.|+.+
T Consensus 172 ~~~L~~L~L~~n~l~~l~~~~-~l~~L~~L~l~~N~l~~l 210 (454)
T 1jl5_A 172 PPSLEFIAAGNNQLEELPELQ-NLPFLTAIYADNNSLKKL 210 (454)
T ss_dssp CTTCCEEECCSSCCSSCCCCT-TCTTCCEEECCSSCCSSC
T ss_pred cccccEEECcCCcCCcCcccc-CCCCCCEEECCCCcCCcC
Confidence 346777777776666665555 577777777777777654
No 130
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=65.79 E-value=0.72 Score=37.52 Aligned_cols=33 Identities=15% Similarity=0.167 Sum_probs=14.1
Q ss_pred chhhhhcchhhhhhHhhHHHhcchhhhhhhccCCcc
Q psy10771 60 TLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIIS 95 (100)
Q Consensus 60 tLEElsLHQq~IEkIE~L~~~CRnLkILYLQNNlIs 95 (100)
+|+.++|+.-.|..|. ..+++|+.|+|++|.|+
T Consensus 81 ~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~ 113 (571)
T 3cvr_A 81 QITVLEITQNALISLP---ELPASLEYLDACDNRLS 113 (571)
T ss_dssp TCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCS
T ss_pred CCCEEECcCCCCcccc---cccCCCCEEEccCCCCC
Confidence 3444444444444333 23444444444444444
No 131
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=65.61 E-value=0.61 Score=35.69 Aligned_cols=38 Identities=26% Similarity=0.420 Sum_probs=22.8
Q ss_pred cchhhhhcchhhhhhHhhHHHhcchhhhhhhccCCcccc
Q psy10771 59 GTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL 97 (100)
Q Consensus 59 ~tLEElsLHQq~IEkIE~L~~~CRnLkILYLQNNlIskI 97 (100)
.+|++++|+.-.|..|..++ -|++|+.|+|.+|.|+.+
T Consensus 131 ~~L~~L~L~~n~l~~lp~~~-~l~~L~~L~l~~N~l~~l 168 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEKLPELQ-NSSFLKIIDVDNNSLKKL 168 (454)
T ss_dssp TTCCEEECCSSCCSSCCCCT-TCTTCCEEECCSSCCSCC
T ss_pred CCCCEEECcCCCCCCCcccC-CCCCCCEEECCCCcCccc
Confidence 45666666665555554444 456666666666666544
No 132
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=64.64 E-value=0.97 Score=34.03 Aligned_cols=13 Identities=23% Similarity=0.138 Sum_probs=6.0
Q ss_pred chhhhhhhccCCc
Q psy10771 82 KHLRILLLHSNII 94 (100)
Q Consensus 82 RnLkILYLQNNlI 94 (100)
++|+.|+|++|.|
T Consensus 211 ~~L~~L~Ls~N~i 223 (372)
T 3un9_A 211 RQLQELNVAYNGA 223 (372)
T ss_dssp SCCCEEECCSSCC
T ss_pred CCcCeEECCCCCC
Confidence 3444444444444
No 133
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=64.51 E-value=1.9 Score=28.86 Aligned_cols=16 Identities=19% Similarity=0.065 Sum_probs=8.0
Q ss_pred hcchhhhhhh--ccCCcc
Q psy10771 80 WCKHLRILLL--HSNIIS 95 (100)
Q Consensus 80 ~CRnLkILYL--QNNlIs 95 (100)
.|+.|+.|+| ++|.|+
T Consensus 119 ~n~~L~~L~L~~~~N~i~ 136 (185)
T 1io0_A 119 SNTSLIELRIDNQSQPLG 136 (185)
T ss_dssp GCSSCCEEECCCCSSCCC
T ss_pred hCCCceEEEecCCCCCCC
Confidence 3445555555 445543
No 134
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=62.82 E-value=0.55 Score=36.58 Aligned_cols=36 Identities=28% Similarity=0.332 Sum_probs=14.6
Q ss_pred cchhhhhcchhhhhhHh-hHHHhcchhhhhhhccCCcc
Q psy10771 59 GTLEEIALHQEHIEKIE-ALDKWCKHLRILLLHSNIIS 95 (100)
Q Consensus 59 ~tLEElsLHQq~IEkIE-~L~~~CRnLkILYLQNNlIs 95 (100)
.+|++++|+.-.+..|. .++ .|++|+.|+|.+|.|+
T Consensus 301 ~~L~~L~Ls~N~l~~i~~~~~-~l~~L~~L~L~~N~l~ 337 (597)
T 3oja_B 301 PTLKVLDLSHNHLLHVERNQP-QFDRLENLYLDHNSIV 337 (597)
T ss_dssp TTCCEEECCSSCCCCCGGGHH-HHTTCSEEECCSSCCC
T ss_pred CCCcEEECCCCCCCccCcccc-cCCCCCEEECCCCCCC
Confidence 34444444444443332 222 3444444444444443
No 135
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=61.91 E-value=0.93 Score=37.05 Aligned_cols=38 Identities=16% Similarity=0.190 Sum_probs=24.0
Q ss_pred cccchhhhhcchhhhhhHhhHHHhcchhhhhhhccCCcccc
Q psy10771 57 EIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL 97 (100)
Q Consensus 57 ~L~tLEElsLHQq~IEkIE~L~~~CRnLkILYLQNNlIskI 97 (100)
.+.+|++++|+.-.|..|.. .|++|+.|+|.+|.|+.|
T Consensus 239 ~l~~L~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N~L~~l 276 (622)
T 3g06_A 239 LPSELKELMVSGNRLTSLPM---LPSGLLSLSVYRNQLTRL 276 (622)
T ss_dssp CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCCSC
T ss_pred CCCcCcEEECCCCCCCcCCc---ccccCcEEeCCCCCCCcC
Confidence 34566666666655555443 567777777777777654
No 136
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=61.86 E-value=1.3 Score=34.40 Aligned_cols=42 Identities=14% Similarity=0.239 Sum_probs=32.4
Q ss_pred ccccchhhhhcchhhhhhHhhHHHhcchhhhhhhccCCcccc
Q psy10771 56 KEIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL 97 (100)
Q Consensus 56 ~~L~tLEElsLHQq~IEkIE~L~~~CRnLkILYLQNNlIskI 97 (100)
+.+.+|++++|+.-.+..+......+++|+.|+|.+|.|+.+
T Consensus 275 ~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~i 316 (597)
T 3oja_B 275 VKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHV 316 (597)
T ss_dssp TTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCCCC
T ss_pred cCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCCcc
Confidence 346788889998888877765444678999999999988765
No 137
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=61.17 E-value=0.84 Score=32.53 Aligned_cols=36 Identities=22% Similarity=0.266 Sum_probs=15.1
Q ss_pred cchhhhhcchhhhh-hH-hhHHHhcchhhhhhhccCCcc
Q psy10771 59 GTLEEIALHQEHIE-KI-EALDKWCKHLRILLLHSNIIS 95 (100)
Q Consensus 59 ~tLEElsLHQq~IE-kI-E~L~~~CRnLkILYLQNNlIs 95 (100)
.+|++++|+.-.|. .+ +.++ .+++|+.|+|++|.|+
T Consensus 244 ~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~Ls~N~l~ 281 (313)
T 1ogq_A 244 KNLNGLDLRNNRIYGTLPQGLT-QLKFLHSLNVSFNNLC 281 (313)
T ss_dssp TTCCEEECCSSCCEECCCGGGG-GCTTCCEEECCSSEEE
T ss_pred CCCCEEECcCCcccCcCChHHh-cCcCCCEEECcCCccc
Confidence 44444444444443 12 1232 3444555555555443
No 138
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=59.12 E-value=2.3 Score=27.87 Aligned_cols=17 Identities=24% Similarity=0.231 Sum_probs=14.6
Q ss_pred chhhhhhhccCCccccc
Q psy10771 82 KHLRILLLHSNIISKLG 98 (100)
Q Consensus 82 RnLkILYLQNNlIskIE 98 (100)
.+|+.|+|++|.|+.|.
T Consensus 31 ~~l~~L~Ls~N~l~~l~ 47 (130)
T 3rfe_A 31 VDTTELVLTGNNLTALP 47 (130)
T ss_dssp TTCSEEECTTSCCSSCC
T ss_pred cCCCEEECCCCcCCccC
Confidence 57899999999998875
No 139
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=58.91 E-value=1.4 Score=34.87 Aligned_cols=39 Identities=21% Similarity=0.250 Sum_probs=24.3
Q ss_pred cchhhhhcchhhhhhHh-hHHHhcchhhhhhhccCCcccc
Q psy10771 59 GTLEEIALHQEHIEKIE-ALDKWCKHLRILLLHSNIISKL 97 (100)
Q Consensus 59 ~tLEElsLHQq~IEkIE-~L~~~CRnLkILYLQNNlIskI 97 (100)
.+|++++|+.-.|..|. .+...|++|+.|+|++|.|+.|
T Consensus 433 ~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i 472 (636)
T 4eco_A 433 INVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEI 472 (636)
T ss_dssp CCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBC
T ss_pred CCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCc
Confidence 36666777666666553 3343567777777777776654
No 140
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=58.56 E-value=1.6 Score=35.66 Aligned_cols=41 Identities=22% Similarity=0.322 Sum_probs=30.9
Q ss_pred cccchhhhhcchhhhhhHhh--HHHhcchhhhhhhccCCccccc
Q psy10771 57 EIGTLEEIALHQEHIEKIEA--LDKWCKHLRILLLHSNIISKLG 98 (100)
Q Consensus 57 ~L~tLEElsLHQq~IEkIE~--L~~~CRnLkILYLQNNlIskIE 98 (100)
.+.+|++++|+.-.|..+.. ++ .+++|+.|+|++|.|+.+.
T Consensus 478 ~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~l~ 520 (844)
T 3j0a_A 478 GLSHLQVLYLNHNYLNSLPPGVFS-HLTALRGLSLNSNRLTVLS 520 (844)
T ss_dssp CBCCEECCCCCHHHHTTCCTTSSS-SCCSCSEEEEESCCCSSCC
T ss_pred CcccccEEECCCCcccccChhHcc-chhhhheeECCCCCCCccC
Confidence 35788888888888887743 33 6788888888888887653
No 141
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=58.47 E-value=2.2 Score=32.00 Aligned_cols=15 Identities=20% Similarity=0.277 Sum_probs=7.6
Q ss_pred HhcchhhhhhhccCC
Q psy10771 79 KWCKHLRILLLHSNI 93 (100)
Q Consensus 79 ~~CRnLkILYLQNNl 93 (100)
..|++|+.|+|.+|.
T Consensus 290 ~~~~~L~~L~Ls~~~ 304 (592)
T 3ogk_B 290 PFAAQIRKLDLLYAL 304 (592)
T ss_dssp GGGGGCCEEEETTCC
T ss_pred hhcCCCcEEecCCCc
Confidence 345555555555544
No 142
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=58.36 E-value=1.2 Score=31.78 Aligned_cols=37 Identities=19% Similarity=0.217 Sum_probs=19.3
Q ss_pred ccchhhhhcchhhhhh-H-hhHHHhcchhhhhhhccCCcc
Q psy10771 58 IGTLEEIALHQEHIEK-I-EALDKWCKHLRILLLHSNIIS 95 (100)
Q Consensus 58 L~tLEElsLHQq~IEk-I-E~L~~~CRnLkILYLQNNlIs 95 (100)
+.+|++++|+.-.|.. + +.++ -+++|+.|+|.+|.|+
T Consensus 124 l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~ 162 (313)
T 1ogq_A 124 IKTLVTLDFSYNALSGTLPPSIS-SLPNLVGITFDGNRIS 162 (313)
T ss_dssp CTTCCEEECCSSEEESCCCGGGG-GCTTCCEEECCSSCCE
T ss_pred CCCCCEEeCCCCccCCcCChHHh-cCCCCCeEECcCCccc
Confidence 4555556655555542 2 2233 4556666666666554
No 143
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=56.96 E-value=1.3 Score=35.05 Aligned_cols=37 Identities=24% Similarity=0.175 Sum_probs=17.3
Q ss_pred chhhhhcchhhhhhHhh-HH-HhcchhhhhhhccCCccc
Q psy10771 60 TLEEIALHQEHIEKIEA-LD-KWCKHLRILLLHSNIISK 96 (100)
Q Consensus 60 tLEElsLHQq~IEkIE~-L~-~~CRnLkILYLQNNlIsk 96 (100)
+|++++|+.-.|..|.. +. ..+++|+.|+|.+|.|+.
T Consensus 489 ~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ 527 (636)
T 4eco_A 489 LLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK 527 (636)
T ss_dssp GCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSS
T ss_pred CccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCC
Confidence 45555555544444432 21 134555555555555543
No 144
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=56.73 E-value=1.5 Score=35.80 Aligned_cols=39 Identities=18% Similarity=0.273 Sum_probs=24.2
Q ss_pred cccchhhhhcchhhhhhH---hhHHHhcchhhhhhhccCCccc
Q psy10771 57 EIGTLEEIALHQEHIEKI---EALDKWCKHLRILLLHSNIISK 96 (100)
Q Consensus 57 ~L~tLEElsLHQq~IEkI---E~L~~~CRnLkILYLQNNlIsk 96 (100)
.+.+|++++|+.-.+..+ +.++ -|++|+.|.|.+|.|+.
T Consensus 121 ~L~~L~~L~Ls~N~l~~~~~~~~~~-~L~~L~~L~Ls~N~i~~ 162 (844)
T 3j0a_A 121 NLKALTRLDLSKNQIRSLYLHPSFG-KLNSLKSIDFSSNQIFL 162 (844)
T ss_dssp SCSSCCEEEEESCCCCCCCCCGGGG-TCSSCCEEEEESSCCCC
T ss_pred ccCCCCEEECCCCcccccccchhHh-hCCCCCEEECCCCcCCe
Confidence 456677777766666554 2344 56677777777776644
No 145
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=52.72 E-value=1.3 Score=38.15 Aligned_cols=39 Identities=18% Similarity=0.152 Sum_probs=23.2
Q ss_pred ccchhhhhcchhhhhhHhh---HHHhcchhhhhhhccCCcccc
Q psy10771 58 IGTLEEIALHQEHIEKIEA---LDKWCKHLRILLLHSNIISKL 97 (100)
Q Consensus 58 L~tLEElsLHQq~IEkIE~---L~~~CRnLkILYLQNNlIskI 97 (100)
+.+|++++|+.-.+..|.. ++ -+++|+.|+|++|.|+.|
T Consensus 547 l~~L~~L~Ls~N~L~~ip~~~~l~-~L~~L~~L~Ls~N~l~~l 588 (876)
T 4ecn_A 547 GPKIQIFYMGYNNLEEFPASASLQ-KMVKLGLLDCVHNKVRHL 588 (876)
T ss_dssp TTTCCEEECCSSCCCBCCCHHHHT-TCTTCCEEECTTSCCCBC
T ss_pred cCCccEEEeeCCcCCccCChhhhh-cCCCCCEEECCCCCcccc
Confidence 3466666666666665533 44 456666666666666543
No 146
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=51.87 E-value=2.1 Score=30.55 Aligned_cols=60 Identities=15% Similarity=0.173 Sum_probs=32.7
Q ss_pred eeccceehhhHHhHHHHHhhcccccccccchhhhhcch------hhhhhHhhHHHhcchhhhhhhccCC-cc
Q psy10771 31 KLKKLSLFWTTVSEDLVRKRAEHNDKEIGTLEEIALHQ------EHIEKIEALDKWCKHLRILLLHSNI-IS 95 (100)
Q Consensus 31 ~~~~~~~~MvrIT~eLIRKraEHNe~~L~tLEElsLHQ------q~IEkIE~L~~~CRnLkILYLQNNl-Is 95 (100)
+|..|.+--..||.+=++ |- ..+..|++++|+. +.++.|..+...|++|+.|.|.++. |+
T Consensus 62 ~L~~LDLs~~~Itd~GL~----~L-~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~IT 128 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFD----HM-EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVT 128 (176)
T ss_dssp CEEEEEEESCCCCGGGGG----GG-TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCC
T ss_pred eEeEEeCcCCCccHHHHH----Hh-cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCC
Confidence 444454444445554332 22 2466788887765 2333333332357888888887753 54
No 147
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=50.60 E-value=2.4 Score=32.30 Aligned_cols=64 Identities=16% Similarity=0.200 Sum_probs=36.4
Q ss_pred eeeeccceehhhHHhHHHHHhhcccccccccchhhhhcch--hh------hhhHhh-HH-HhcchhhhhhhccCCcc
Q psy10771 29 FVKLKKLSLFWTTVSEDLVRKRAEHNDKEIGTLEEIALHQ--EH------IEKIEA-LD-KWCKHLRILLLHSNIIS 95 (100)
Q Consensus 29 ~~~~~~~~~~MvrIT~eLIRKraEHNe~~L~tLEElsLHQ--q~------IEkIE~-L~-~~CRnLkILYLQNNlIs 95 (100)
..+|+.|.+....++.+-++-=+. ..+.+|+++.|+. .+ ++.|.. +. ..|++|+.|.|.+|.|+
T Consensus 192 ~~~L~~L~L~~~~l~~~~l~~l~~---~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~ 265 (362)
T 2ra8_A 192 RPNLKSLEIISGGLPDSVVEDILG---SDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQ 265 (362)
T ss_dssp CTTCSEEEEECSBCCHHHHHHHHH---SBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTH
T ss_pred CCCCcEEEEecCCCChHHHHHHHH---ccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCc
Confidence 446788888777777776543321 1355677766642 11 333322 11 24677777777777664
No 148
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=48.54 E-value=2.8 Score=36.04 Aligned_cols=38 Identities=16% Similarity=0.302 Sum_probs=23.1
Q ss_pred chhhhhcchhhhhhHh-hHHHhcchhhhhhhccCCcccc
Q psy10771 60 TLEEIALHQEHIEKIE-ALDKWCKHLRILLLHSNIISKL 97 (100)
Q Consensus 60 tLEElsLHQq~IEkIE-~L~~~CRnLkILYLQNNlIskI 97 (100)
+|++++|+.-.|..|. .+...|++|+.|+|++|.|+.|
T Consensus 674 ~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~i 712 (876)
T 4ecn_A 674 NASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSI 712 (876)
T ss_dssp CEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCC
T ss_pred CcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCcc
Confidence 5666666666666553 3333566677777777666544
No 149
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=48.06 E-value=2.6 Score=33.95 Aligned_cols=39 Identities=23% Similarity=0.428 Sum_probs=23.9
Q ss_pred ccccchhhhhcchhhhh----hHhhHHHhcchhhhhhhccCCcc
Q psy10771 56 KEIGTLEEIALHQEHIE----KIEALDKWCKHLRILLLHSNIIS 95 (100)
Q Consensus 56 ~~L~tLEElsLHQq~IE----kIE~L~~~CRnLkILYLQNNlIs 95 (100)
+.+.+|++++|+.-.+. ..+.++ .|++|+.|+|.+|.+.
T Consensus 97 ~~l~~L~~L~Ls~n~l~~~~~~~~~l~-~l~~L~~L~Ls~n~l~ 139 (768)
T 3rgz_A 97 KCSASLTSLDLSRNSLSGPVTTLTSLG-SCSGLKFLNVSSNTLD 139 (768)
T ss_dssp CCCTTCCEEECCSSEEEEEGGGGGGGG-GCTTCCEEECCSSEEE
T ss_pred ccCCCCCEEECCCCcCCCcCCChHHHh-CCCCCCEEECcCCccC
Confidence 44567777777765543 222455 5677777777777553
No 150
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=43.47 E-value=2.7 Score=32.03 Aligned_cols=39 Identities=26% Similarity=0.426 Sum_probs=28.4
Q ss_pred chhhhhcchhhhhhHhh-HHHhcchhhhhhhccCCcccccC
Q psy10771 60 TLEEIALHQEHIEKIEA-LDKWCKHLRILLLHSNIISKLGK 99 (100)
Q Consensus 60 tLEElsLHQq~IEkIE~-L~~~CRnLkILYLQNNlIskIEN 99 (100)
+|++|.|.. .++.|+. .=..|.+|+.+.|.+|.|..|..
T Consensus 158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~ 197 (401)
T 4fdw_A 158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPA 197 (401)
T ss_dssp CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECT
T ss_pred CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEech
Confidence 578888875 7777752 22378999999999888777653
No 151
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=42.55 E-value=2.2 Score=34.40 Aligned_cols=15 Identities=27% Similarity=0.477 Sum_probs=6.8
Q ss_pred ccchhhhhcchhhhh
Q psy10771 58 IGTLEEIALHQEHIE 72 (100)
Q Consensus 58 L~tLEElsLHQq~IE 72 (100)
+.+|++++|+.-.|.
T Consensus 150 l~~L~~L~Ls~n~l~ 164 (768)
T 3rgz_A 150 LNSLEVLDLSANSIS 164 (768)
T ss_dssp CTTCSEEECCSSCCE
T ss_pred CCCCCEEECCCCccC
Confidence 344445544444433
No 152
>4ayb_F DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_F 2y0s_F 2waq_F 4b1o_F 4b1p_U 2pmz_F 3hkz_F
Probab=30.30 E-value=14 Score=24.71 Aligned_cols=26 Identities=23% Similarity=0.270 Sum_probs=16.1
Q ss_pred cccchhhhhcchhhhhhH-hhHHHhcc
Q psy10771 57 EIGTLEEIALHQEHIEKI-EALDKWCK 82 (100)
Q Consensus 57 ~L~tLEElsLHQq~IEkI-E~L~~~CR 82 (100)
.+.+++...+.++++++| +.|+++|+
T Consensus 86 li~s~e~~~~~deeL~~IL~~l~ky~~ 112 (113)
T 4ayb_F 86 ILIMDSNRTYTSEDIQKIIDIIRKYIK 112 (113)
T ss_dssp TTTTTCCCCCCCTHHHHHHHHC-----
T ss_pred HHHhhccCCCCHHHHHHHHHHHHHHhc
Confidence 456677778888888888 67887775
No 153
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=24.32 E-value=30 Score=23.15 Aligned_cols=27 Identities=22% Similarity=0.500 Sum_probs=20.1
Q ss_pred hhhhhcchhhhhhHh-hHHHhcchhhhh
Q psy10771 61 LEEIALHQEHIEKIE-ALDKWCKHLRIL 87 (100)
Q Consensus 61 LEElsLHQq~IEkIE-~L~~~CRnLkIL 87 (100)
+++|..|+++|++.+ .|+..=.+++-|
T Consensus 50 ~~el~~h~~ei~~le~~i~rhk~~i~~l 77 (84)
T 1gmj_A 50 ENEISHHAKEIERLQKEIERHKQSIKKL 77 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 678999999999986 577665555443
No 154
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=20.86 E-value=11 Score=27.48 Aligned_cols=37 Identities=24% Similarity=0.372 Sum_probs=18.1
Q ss_pred cchhhhhcchhhhhhHhh--HHHhcchhhhhhhccCCccccc
Q psy10771 59 GTLEEIALHQEHIEKIEA--LDKWCKHLRILLLHSNIISKLG 98 (100)
Q Consensus 59 ~tLEElsLHQq~IEkIE~--L~~~CRnLkILYLQNNlIskIE 98 (100)
.+|+.|.|.. +++.|+. .. -|.+|+.+.|.+| +..|+
T Consensus 320 ~~L~~i~lp~-~v~~I~~~aF~-~c~~L~~i~lp~~-l~~I~ 358 (394)
T 4fs7_A 320 TSLVSIDLPY-LVEEIGKRSFR-GCTSLSNINFPLS-LRKIG 358 (394)
T ss_dssp TTCCEECCCT-TCCEECTTTTT-TCTTCCEECCCTT-CCEEC
T ss_pred CCCCEEEeCC-cccEEhHHhcc-CCCCCCEEEECcc-ccEeh
Confidence 3455555542 3555532 22 4666666666555 44443
Done!