RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy10771
         (100 letters)



>gnl|CDD|214504 smart00072, GuKc, Guanylate kinase homologues.  Active enzymes
           catalyze ATP-dependent phosphorylation of GMP to GDP.
           Structure resembles that of adenylate kinase. So-called
           membrane-associated guanylate kinase homologues (MAGUKs)
           do not possess guanylate kinase activities; instead at
           least some possess protein-binding functions.
          Length = 174

 Score = 28.0 bits (63), Expect = 0.60
 Identities = 19/83 (22%), Positives = 33/83 (39%), Gaps = 10/83 (12%)

Query: 9   RHSELYMYRI-IHPVKNRIISFVKLKKLSLFWTTVSEDLVRKRAEHNDKEIGTLEEIALH 67
           R ++LY   I I P      S  +L++      T + + ++KR     KE     E  L 
Sbjct: 99  RKAQLYPIVIFIAPP-----SSEELERRLRQRGTETSERIQKRLAAAQKEAQ---EYHLF 150

Query: 68  QEHIEKIEALDKWCKHLRILLLH 90
              I   + L+   + L+ +L  
Sbjct: 151 DYVIVN-DDLEDAYEELKEILEA 172


>gnl|CDD|220967 pfam11073, NSs, Rift valley fever virus non structural protein
           (NSs) like.  This family contains several Phlebovirus
           non structural proteins which act as a major determinant
           of virulence by antagonising interferon beta gene
           expression.
          Length = 238

 Score = 27.7 bits (62), Expect = 0.90
 Identities = 14/82 (17%), Positives = 31/82 (37%), Gaps = 10/82 (12%)

Query: 3   RPKNLYRHSELYM--YRIIHPVKNRIISFVKLKKLSLFWTTVSEDLVRKRAEHNDKEIGT 60
            P ++Y   E+ +  YR     +  +  F  + +    W      + +   +  D   GT
Sbjct: 27  CPVSVYNGCEIPLEKYRQSFDSRPTLSDFYSVGEFPARWGPGCSSVTKPSTKFFD---GT 83

Query: 61  LEEIALHQEHIEKIEALDKWCK 82
           +E+++        IE+  + C 
Sbjct: 84  IEDLSR-----FDIESFLRSCL 100


>gnl|CDD|179648 PRK03776, PRK03776, phosphoglycerol transferase I; Provisional.
          Length = 762

 Score = 26.2 bits (58), Expect = 3.6
 Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 14/69 (20%)

Query: 33  KKLSLFWTTV---------SEDLVRKRAEHNDKEIGTLEEIALHQEH----IEKIEALDK 79
           ++ SLF  TV         S    RK  + + K   +   ++  QE+    I KI+A   
Sbjct: 324 QRFSLFTLTVDTHHPDGFISRTCNRKSYDFDGKPNQSFSAVSCSQENIAALINKIKA-SP 382

Query: 80  WCKHLRILL 88
           W K+  I++
Sbjct: 383 WFKNTVIVV 391


>gnl|CDD|236321 PRK08645, PRK08645, bifunctional homocysteine
           S-methyltransferase/5,10-methylenetetrahydrofolate
           reductase protein; Reviewed.
          Length = 612

 Score = 26.0 bits (58), Expect = 4.4
 Identities = 9/34 (26%), Positives = 17/34 (50%)

Query: 41  TVSEDLVRKRAEHNDKEIGTLEEIALHQEHIEKI 74
           T+ E++  +     DKE    E +A+ +E I+  
Sbjct: 544 TLPEEIRERMRAVEDKEEAREEGVAIARELIDAA 577


>gnl|CDD|225609 COG3067, NhaB, Na+/H+ antiporter [Inorganic ion transport and
           metabolism].
          Length = 516

 Score = 25.9 bits (57), Expect = 4.9
 Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 7/50 (14%)

Query: 50  RAEHNDKEIGTLEEIA-LHQEHIEKIEALDKWCKHLRILLLHSNIISKLG 98
           R E +D +I     I   ++  +E+  A       LR L++H+ + + LG
Sbjct: 173 RTESDDTDITDDSHIDEHYKVVLEQFRAF------LRSLMMHAGVGTALG 216


>gnl|CDD|236637 PRK09970, PRK09970, xanthine dehydrogenase subunit XdhA;
           Provisional.
          Length = 759

 Score = 25.4 bits (56), Expect = 6.7
 Identities = 13/63 (20%), Positives = 28/63 (44%), Gaps = 13/63 (20%)

Query: 22  VKNRIISFVKLK----KLSLFWTTVSEDLVRKRAEHNDKEIGTLEEIAL----HQEHIEK 73
           +K +I++   +      ++L    +   +V K      + + +LEE+A+    H E   +
Sbjct: 542 LKEKILAHAAVMLHQSAMNL--DIIDGHIVVK---RPGEPLMSLEELAMDAYYHPERGGQ 596

Query: 74  IEA 76
           I A
Sbjct: 597 ITA 599


>gnl|CDD|153383 cd07371, 2A5CPDO_AB, The alpha and beta subunits of the Class III
           extradiol dioxygenase, 2-amino-5-chlorophenol
           1,6-dioxygenase, which catalyzes the oxidization and
           subsequent ring-opening of 2-amino-5-chlorophenol.  This
           subfamily contains both alpha and beta subunits of
           2-amino-5-chlorophenol 1,6-dioxygenase (2A5CPDO), which
           catalyzes the oxidization and subsequent ring-opening of
           2-amino-5-chlorophenol, an intermediate during
           p-chloronitrobenzene degradation. 2A5CPDO is a member of
           the class III extradiol dioxygenase family, a group of
           enzymes which use a non-heme Fe(II) to cleave aromatic
           rings between a hydroxylated carbon and an adjacent
           non-hydroxylated carbon. The active enzyme is probably a
           heterotetramer, composed of two alpha and two beta
           subunits. Alpha and beta subunits share significant
           sequence similarity and may have evolved by gene
           duplication.
          Length = 268

 Score = 25.1 bits (55), Expect = 7.4
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 3/28 (10%)

Query: 62  EEIALHQEHIEKIEALDKWCKHLRILLL 89
           EEI   ++HIE  E  DKW  + R+L L
Sbjct: 181 EEIDPPKDHIES-EEGDKW--NRRMLEL 205


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.324    0.138    0.410 

Gapped
Lambda     K      H
   0.267   0.0738    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,244,240
Number of extensions: 455463
Number of successful extensions: 554
Number of sequences better than 10.0: 1
Number of HSP's gapped: 554
Number of HSP's successfully gapped: 15
Length of query: 100
Length of database: 10,937,602
Length adjustment: 66
Effective length of query: 34
Effective length of database: 8,010,238
Effective search space: 272348092
Effective search space used: 272348092
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 53 (24.2 bits)