RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10771
(100 letters)
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder,
flagella, contractIle protein; NMR {Chlamydomonas
reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Length = 198
Score = 49.7 bits (119), Expect = 6e-09
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Query: 41 TVSEDLVRKRAEHNDKEIGTLEEIALHQEH--IEKIEALDKWCKHLRILLLHSNIISKL 97
T +D +R E E++ LH IEK++A K + L L +N I K+
Sbjct: 5 TTIKDAIRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKI 63
Score = 30.0 bits (68), Expect = 0.070
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 49 KRAEHNDKEIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL 97
K+ E+ D TLEE+ + I + ++K +LR+L + +N I+
Sbjct: 83 KKIENLDAVADTLEELWISYNQIASLSGIEK-LVNLRVLYMSNNKITNW 130
Score = 29.7 bits (67), Expect = 0.12
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 61 LEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL 97
L ++L + I+KIE LD L L + N I+ L
Sbjct: 72 LRILSLGRNLIKKIENLDAVADTLEELWISYNQIASL 108
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP,
ribonucleoprotein, RNA binding protein/RNA complex;
2.38A {Homo sapiens} SCOP: c.10.2.4
Length = 176
Score = 42.3 bits (100), Expect = 3e-06
Identities = 12/55 (21%), Positives = 21/55 (38%), Gaps = 2/55 (3%)
Query: 43 SEDLVRKRAEHNDKEIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL 97
+ +L+ + A++ + E+ L I IE L + N I KL
Sbjct: 5 TAELIEQAAQYTN--AVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL 57
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2
protein, silver-stainable protein SSP29, acidic prote
in leucines, structural genomics; NMR {Homo sapiens}
PDB: 2rr6_A 2jqd_A
Length = 168
Score = 35.1 bits (81), Expect = 0.001
Identities = 11/52 (21%), Positives = 21/52 (40%), Gaps = 2/52 (3%)
Query: 48 RKRAEHNDKEIGTLEEIALH--QEHIEKIEALDKWCKHLRILLLHSNIISKL 97
R E ++ + E+ L + + KIE L +L L L + + +
Sbjct: 13 RIHLELRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV 64
Score = 27.0 bits (60), Expect = 0.78
Identities = 12/46 (26%), Positives = 17/46 (36%), Gaps = 1/46 (2%)
Query: 52 EHNDKEIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL 97
E E LE ++L + + L K L+ L L N I
Sbjct: 42 EGLTAEFVNLEFLSLINVGLISVSNLPK-LPKLKKLELSENRIFGG 86
Score = 25.5 bits (56), Expect = 3.0
Identities = 8/39 (20%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 61 LEEIALHQEHIEKI-EALDKWCKHLRILLLHSNIISKLG 98
L+++ L + I + L + +L L L N + +
Sbjct: 73 LKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDIS 111
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A;
nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Length = 149
Score = 33.1 bits (76), Expect = 0.005
Identities = 9/52 (17%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Query: 48 RKRAEHNDKEIGTLEEIAL--HQEHIEKIEALDKWCKHLRILLLHSNIISKL 97
R E ++ ++E+ L + + K+E L + L L + ++ +
Sbjct: 6 RIHLELRNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI 57
Score = 28.1 bits (63), Expect = 0.35
Identities = 12/47 (25%), Positives = 17/47 (36%), Gaps = 1/47 (2%)
Query: 52 EHNDKEIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKLG 98
E E LE ++ + I L K L+ L L N +S
Sbjct: 35 EGLTDEFEELEFLSTINVGLTSIANLPK-LNKLKKLELSDNRVSGGL 80
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.7 bits (71), Expect = 0.023
Identities = 15/102 (14%), Positives = 31/102 (30%), Gaps = 32/102 (31%)
Query: 6 NLYRHSELYMYRIIHP--VKNRIISFVKLKKLSLFWTTVSED-------------LVRKR 50
YR +++ + P + LSL W V + LV K+
Sbjct: 369 AEYR--KMFDRLSVFPPSAH------IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQ 420
Query: 51 AE---------HNDKEIGTLEEIALHQEHIEKIEALDKWCKH 83
+ + + ++ E ALH+ ++ +
Sbjct: 421 PKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSD 462
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling
protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15
b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Length = 605
Score = 30.1 bits (67), Expect = 0.092
Identities = 10/70 (14%), Positives = 32/70 (45%), Gaps = 8/70 (11%)
Query: 28 SFVKLKKLSLFWTTVSEDLVRKRAEHNDKEIGTLEEIALHQEHIEKIEALDKWCKHLRIL 87
+F + K +L +V++ E+ ++++I + I+ ++ + ++ L
Sbjct: 19 AFAETIKDNLKKKSVTD-------AVTQNELNSIDQIIANNSDIKSVQGIQY-LPNVTKL 70
Query: 88 LLHSNIISKL 97
L+ N ++ +
Sbjct: 71 FLNGNKLTDI 80
Score = 29.7 bits (66), Expect = 0.14
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 61 LEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL 97
L + L + I+ + +L K L+ L L N IS +
Sbjct: 89 LGWLFLDENKIKDLSSLKD-LKKLKSLSLEHNGISDI 124
Score = 27.4 bits (60), Expect = 0.77
Identities = 12/37 (32%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 61 LEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL 97
LE + L I I L + L L L N IS +
Sbjct: 133 LESLYLGNNKITDITVLSR-LTKLDTLSLEDNQISDI 168
Score = 25.8 bits (56), Expect = 3.0
Identities = 5/37 (13%), Positives = 10/37 (27%), Gaps = 1/37 (2%)
Query: 61 LEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL 97
+ E I++I D L ++
Sbjct: 1 MGETITVSTPIKQIFPDDA-FAETIKDNLKKKSVTDA 36
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.4 bits (65), Expect = 0.14
Identities = 9/40 (22%), Positives = 18/40 (45%), Gaps = 3/40 (7%)
Query: 47 VRKRAEHNDKEIGTLEEIALHQEHIEKIEA---LDKWCKH 83
+RK E K + L+ + E + +A L++W +
Sbjct: 87 IRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQR 126
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain,
EF-hand domain; 1.6A {Listeria monocytogenes} SCOP:
b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A*
2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Length = 291
Score = 28.5 bits (64), Expect = 0.28
Identities = 10/37 (27%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 61 LEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL 97
L + L + ++ + +L K L+ L L N IS +
Sbjct: 92 LGWLFLDENKVKDLSSLKD-LKKLKSLSLEHNGISDI 127
Score = 26.9 bits (60), Expect = 0.96
Identities = 12/37 (32%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 61 LEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL 97
LE + L I I L + L L L N IS +
Sbjct: 136 LESLYLGNNKITDITVLSR-LTKLDTLSLEDNQISDI 171
Score = 25.4 bits (56), Expect = 3.3
Identities = 9/37 (24%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 61 LEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL 97
+ ++ L+ + I+ L K+L L L N + L
Sbjct: 70 VTKLFLNGNKLTDIKPLAN-LKNLGWLFLDENKVKDL 105
>5rub_A Rubisco (ribulose-1,5-bisphosphate carboxylase(slash)oxygenase);
lyase(carbon-carbon); 1.70A {Rhodospirillum rubrum}
SCOP: c.1.14.1 d.58.9.1 PDB: 1rus_A 2rus_A 9rub_A*
1rba_A
Length = 490
Score = 28.3 bits (62), Expect = 0.43
Identities = 5/29 (17%), Positives = 11/29 (37%), Gaps = 2/29 (6%)
Query: 60 TLEEIALHQEHIEKIEALDKWCKHLRILL 88
+ + A +EH E A + + +
Sbjct: 446 PVLDYA--REHKELARAFESFPGDADQIY 472
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell
invasion; 2.05A {Listeria monocytogenes}
Length = 263
Score = 28.1 bits (63), Expect = 0.46
Identities = 8/37 (21%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 61 LEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL 97
++ +I+ + + +L+ L L N IS L
Sbjct: 43 VQNFNGDNSNIQSLAGMQF-FTNLKELHLSHNQISDL 78
Score = 27.7 bits (62), Expect = 0.53
Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 61 LEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL 97
L+E+ L I + L L L ++ N + L
Sbjct: 65 LKELHLSHNQISDLSPLKD-LTKLEELSVNRNRLKNL 100
Score = 27.7 bits (62), Expect = 0.61
Identities = 8/38 (21%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 60 TLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL 97
L + L + ++L K+L IL + +N + +
Sbjct: 107 CLSRLFLDNNELRDTDSLIH-LKNLEILSIRNNKLKSI 143
>4fmz_A Internalin; leucine rich repeat, structural genomic center for
structural genomics, JCSG, protein structure INI
PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes
serotype 4B}
Length = 347
Score = 27.1 bits (61), Expect = 0.88
Identities = 10/70 (14%), Positives = 31/70 (44%), Gaps = 8/70 (11%)
Query: 28 SFVKLKKLSLFWTTVSEDLVRKRAEHNDKEIGTLEEIALHQEHIEKIEALDKWCKHLRIL 87
+ + L +V++ + +E+ ++ ++ + E + I+ ++ +L L
Sbjct: 20 DLAEGIRAVLQKASVTDVV-------TQEELESITKLVVAGEKVASIQGIEY-LTNLEYL 71
Query: 88 LLHSNIISKL 97
L+ N I+ +
Sbjct: 72 NLNGNQITDI 81
Score = 25.6 bits (57), Expect = 2.9
Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 61 LEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL 97
L + + I I AL +LR L L+ + IS +
Sbjct: 90 LTNLYIGTNKITDISALQN-LTNLRELYLNEDNISDI 125
Score = 25.6 bits (57), Expect = 3.0
Identities = 8/37 (21%), Positives = 13/37 (35%), Gaps = 1/37 (2%)
Query: 61 LEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL 97
L + I I + L L + +N I+ L
Sbjct: 201 LHYFTAYVNQITDITPVAN-MTRLNSLKIGNNKITDL 236
Score = 25.2 bits (56), Expect = 4.8
Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 61 LEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL 97
LE + L+ I I L L L + +N I+ +
Sbjct: 68 LEYLNLNGNQITDISPLSN-LVKLTNLYIGTNKITDI 103
>3ewi_A N-acylneuraminate cytidylyltransferase; beta barrel, HAD-like,
rossmannoid fold, nucleotidyltransferase, nucleus;
1.90A {Mus musculus}
Length = 168
Score = 26.3 bits (59), Expect = 1.5
Identities = 5/42 (11%), Positives = 13/42 (30%), Gaps = 8/42 (19%)
Query: 45 DLVRKRAEHNDKEIGTLEEIALHQEHIEKIEALDKWCKHLRI 86
A ++ +K+ +D+W K + +
Sbjct: 64 SKQTLSA----LKLD----CKTEVSVSDKLATVDEWRKEMGL 97
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis,
effector protein, virulence factor, toxin; 2.10A
{Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Length = 454
Score = 26.5 bits (59), Expect = 1.6
Identities = 7/42 (16%), Positives = 16/42 (38%)
Query: 56 KEIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL 97
+ LE + + ++ L + K L + + +S L
Sbjct: 88 ELPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDL 129
>3pt1_A UPF0364 protein YMR027W; alpha/beta fold, carbohydrate phosphatase,
F6P binding, HYDR; HET: F6P; 1.77A {Saccharomyces
cerevisiae}
Length = 471
Score = 26.6 bits (58), Expect = 1.7
Identities = 15/85 (17%), Positives = 32/85 (37%), Gaps = 9/85 (10%)
Query: 10 HSELYMYRIIH------PVKNRIISFVKLKKLSLFWTTVSEDLVRKRAEHNDKEIGTLEE 63
SE+Y+YR ++ + F +LK+ + S V + A + + L E
Sbjct: 109 FSEVYLYRRVNVLFQRQCEWAKFDIFNRLKQSTFE---SSFYGVVELALRYENLLPQLRE 165
Query: 64 IALHQEHIEKIEALDKWCKHLRILL 88
+ + + + + + I L
Sbjct: 166 MKQNPGNEIDDILKVLFKEFIEISL 190
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 26.2 bits (57), Expect = 2.0
Identities = 11/67 (16%), Positives = 26/67 (38%), Gaps = 14/67 (20%)
Query: 41 TVSEDLVRKRAEHNDKEIGTLEEIA----LHQE-----HIEKIEALDKWCKHLRILLLHS 91
+ S++ ++ E K G L EI +Q+ + ++ + +++
Sbjct: 1820 SFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKL----Q 1875
Query: 92 NI-ISKL 97
I I +L
Sbjct: 1876 KIDIIEL 1882
Score = 24.6 bits (53), Expect = 7.6
Identities = 13/64 (20%), Positives = 22/64 (34%), Gaps = 21/64 (32%)
Query: 35 LSLFWTTVSED---LVRKR------AEHNDKEIGTLEE--IALHQEHIEKI---EALDKW 80
+S+ E +V R A D E+G IA++ + EAL
Sbjct: 1777 MSI------ESLVEVVFYRGMTMQVAVPRD-ELGRSNYGMIAINPGRVAASFSQEALQYV 1829
Query: 81 CKHL 84
+ +
Sbjct: 1830 VERV 1833
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport
element (CTE), RNA recogni motif (RRM); HET: GTP CCC;
2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A
1fo1_A
Length = 267
Score = 25.7 bits (56), Expect = 2.5
Identities = 5/30 (16%), Positives = 14/30 (46%)
Query: 69 EHIEKIEALDKWCKHLRILLLHSNIISKLG 98
++ + ++ + +L+IL L N +
Sbjct: 183 YRLDDMSSIVQKAPNLKILNLSGNELKSER 212
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 25.5 bits (56), Expect = 3.7
Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 61 LEEIALHQEHIEKIEALD-KWCKHLRILLLHSNIISKL 97
L+E+ L H+ I + HL+ L + + I +
Sbjct: 209 LDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVI 246
Score = 24.7 bits (54), Expect = 6.6
Identities = 11/39 (28%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 61 LEEIALHQEHIEKIE--ALDKWCKHLRILLLHSNIISKL 97
L+++ + Q I+ IE A D + L + L N ++ L
Sbjct: 233 LQKLWMIQSQIQVIERNAFDN-LQSLVEINLAHNNLTLL 270
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein,
signaling; HET: NAG FLC; 3.40A {Bos taurus}
Length = 332
Score = 25.4 bits (56), Expect = 4.0
Identities = 13/39 (33%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 60 TLEEIALHQEHIEKIEALD-KWCKHLRILLLHSNIISKL 97
TL E+ L I+ IE D L L L N I +
Sbjct: 194 TLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMI 232
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
c.10.2.7
Length = 347
Score = 25.5 bits (55), Expect = 4.2
Identities = 7/39 (17%), Positives = 13/39 (33%), Gaps = 3/39 (7%)
Query: 61 LEEIALHQEHIEKIE--ALDKWCKHLRILLLHSNIISKL 97
L + + + + + A L L L N + L
Sbjct: 58 LRNLTIVKSGLRFVAPDAFHF-TPRLSRLNLSFNALESL 95
>3nwr_A A rubisco-like protein; lyase; HET: KCX; 1.50A {Burkholderia
fungorum}
Length = 432
Score = 25.4 bits (55), Expect = 4.4
Identities = 5/22 (22%), Positives = 7/22 (31%), Gaps = 2/22 (9%)
Query: 61 LEEIALHQEHIEKIEALDKWCK 82
L A + E AL +
Sbjct: 411 LPVYA--EHMPELRRALAFFGG 430
>1baz_A ARC repressor; transcription regulation; 1.90A {Enterobacteria
phage P22} SCOP: a.43.1.1 PDB: 1bdv_A* 1arq_A 1arr_A
1bdt_A* 1par_A* 1myk_A 1qtg_A 1b28_A 1myl_A
Length = 53
Score = 24.0 bits (51), Expect = 4.7
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 31 KLKKLSLFWTTVSEDLVRKRAEHNDKEIGT 60
K+ +++L W DLVRK AE N + + +
Sbjct: 6 KMPQVNLRWPREVLDLVRKVAEENGRSVNS 35
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 24.7 bits (54), Expect = 7.1
Identities = 8/39 (20%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
Query: 61 LEEIALHQEHIEKIE--ALDKWCKHLRILLLHSNIISKL 97
LEE+ + H +I + L+ L + ++ +S +
Sbjct: 220 LEELEMSGNHFPEIRPGSFHGL-SSLKKLWVMNSQVSLI 257
Score = 24.3 bits (53), Expect = 8.3
Identities = 7/38 (18%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Query: 61 LEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKLG 98
L+ + L +I+ + L L L + N ++
Sbjct: 198 LKYLNLGMCNIKDMPNLTP-LVGLEELEMSGNHFPEIR 234
Score = 24.3 bits (53), Expect = 8.4
Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 3/39 (7%)
Query: 61 LEEIALHQEHIEKIE--ALDKWCKHLRILLLHSNIISKL 97
L+++ + + IE A D L L L N +S L
Sbjct: 244 LKKLWVMNSQVSLIERNAFDG-LASLVELNLAHNNLSSL 281
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain,
EF-hand domain; 1.8A {Listeria monocytogenes} SCOP:
b.1.18.15 c.10.2.1
Length = 308
Score = 24.3 bits (53), Expect = 7.8
Identities = 8/37 (21%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 61 LEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL 97
++ + L I + L +L++L L N I+ +
Sbjct: 109 IKTLDLTSTQITDVTPLAG-LSNLQVLYLDLNQITNI 144
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto;
TLR2, PAM3CSK4, lipopeptide, innate immunity,
cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ;
1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A*
3a7b_A* 2z7x_A*
Length = 549
Score = 24.3 bits (53), Expect = 8.4
Identities = 10/39 (25%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 60 TLEEIALHQEHIEKIEALD-KWCKHLRILLLHSNIISKL 97
++ + L I I D + C +L++L+L S+ I+ +
Sbjct: 27 AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTI 65
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein;
HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A*
1xcd_A*
Length = 330
Score = 24.2 bits (53), Expect = 9.1
Identities = 11/38 (28%), Positives = 22/38 (57%)
Query: 61 LEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKLG 98
L E+ L+ + K+ K+++++ LH+N IS +G
Sbjct: 242 LRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIG 279
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain,
leucine rich repeats, BFR43, structural genomics, PSI-2;
1.95A {Bacteroides fragilis}
Length = 362
Score = 24.1 bits (51), Expect = 9.9
Identities = 13/73 (17%), Positives = 24/73 (32%), Gaps = 7/73 (9%)
Query: 28 SFVKLKKLSLFWTTVSEDLVRKRAEHNDKEIGTLEEIALHQEHI-----EKIEALDKWCK 82
F LK L + +V E + LE + + + + K
Sbjct: 250 RFPNLKWLGIVDAEEQNVVVEMFLES--DILPQLETMDISAGVLTDEGARLLLDHVDKIK 307
Query: 83 HLRILLLHSNIIS 95
HL+ + + N +S
Sbjct: 308 HLKFINMKYNYLS 320
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.138 0.410
Gapped
Lambda K H
0.267 0.0468 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,579,341
Number of extensions: 84423
Number of successful extensions: 468
Number of sequences better than 10.0: 1
Number of HSP's gapped: 458
Number of HSP's successfully gapped: 124
Length of query: 100
Length of database: 6,701,793
Length adjustment: 66
Effective length of query: 34
Effective length of database: 4,859,007
Effective search space: 165206238
Effective search space used: 165206238
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 51 (24.1 bits)