RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10771
         (100 letters)



>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae
          (Chlamydomonas reinhardtii) [TaxId: 3055]}
          Length = 198

 Score = 27.0 bits (58), Expect = 0.40
 Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 5/62 (8%)

Query: 39 WTTVSEDLVRKRAEHNDKEIGTLEEIALHQEHIEKIEALDKW---CKHLRILLLHSNIIS 95
           TT+ + + R   E         E++ LH   I  IE +D      K  + L L +N I 
Sbjct: 4  ATTIKDAI-RIFEERKSVVATEAEKVELHGM-IPPIEKMDATLSTLKACKHLALSTNNIE 61

Query: 96 KL 97
          K+
Sbjct: 62 KI 63


>d1z1ba1 d.10.1.4 (A:11-59) lambda integrase N-terminal domain
          {Bacteriophage lambda [TaxId: 10710]}
          Length = 49

 Score = 23.6 bits (51), Expect = 2.1
 Identities = 7/26 (26%), Positives = 9/26 (34%), Gaps = 1/26 (3%)

Query: 4  PKNLYRHSELYMYRIIHPVKNRIISF 29
          P NLY  +  Y Y    P   +    
Sbjct: 3  PPNLYIRNNGY-YCYRDPRTGKEFGL 27


>d1wdda1 c.1.14.1 (A:151-475) Ribulose 1,5-bisphosphate
           carboxylase-oxygenase {Rice (Oryza sativa) [TaxId:
           4530]}
          Length = 325

 Score = 23.6 bits (51), Expect = 5.7
 Identities = 8/27 (29%), Positives = 10/27 (37%)

Query: 62  EEIALHQEHIEKIEALDKWCKHLRILL 88
           E   L +E  E I +  KW   L    
Sbjct: 283 EGRDLAREGNEIIRSACKWSPELAAAC 309


>d1mc3a_ c.68.1.6 (A:) RffH {Escherichia coli [TaxId: 562]}
          Length = 291

 Score = 23.2 bits (50), Expect = 6.9
 Identities = 7/27 (25%), Positives = 12/27 (44%)

Query: 47  VRKRAEHNDKEIGTLEEIALHQEHIEK 73
           V+   +    +I  LEEIA     ++ 
Sbjct: 238 VQTVEKRQGFKIACLEEIAWRNGWLDD 264


>d5ruba1 c.1.14.1 (A:138-457) Ribulose 1,5-bisphosphate
           carboxylase-oxygenase {Rhodospirillum rubrum [TaxId:
           1085]}
          Length = 320

 Score = 23.2 bits (50), Expect = 7.5
 Identities = 5/25 (20%), Positives = 10/25 (40%), Gaps = 2/25 (8%)

Query: 60  TLEEIALHQEHIEKIEALDKWCKHL 84
            + + A  +EH E   A + +    
Sbjct: 285 PVLDYA--REHKELARAFESFPGDA 307


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.138    0.410 

Gapped
Lambda     K      H
   0.267   0.0637    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 398,510
Number of extensions: 17379
Number of successful extensions: 84
Number of sequences better than 10.0: 1
Number of HSP's gapped: 84
Number of HSP's successfully gapped: 18
Length of query: 100
Length of database: 2,407,596
Length adjustment: 62
Effective length of query: 38
Effective length of database: 1,556,336
Effective search space: 59140768
Effective search space used: 59140768
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 47 (22.1 bits)