Query psy10772
Match_columns 378
No_of_seqs 216 out of 639
Neff 6.7
Searched_HMMs 46136
Date Fri Aug 16 18:06:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10772.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10772hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3611|consensus 100.0 3.7E-80 8E-85 654.6 25.0 349 8-366 178-644 (737)
2 smart00630 Sema semaphorin dom 100.0 7.6E-65 1.6E-69 510.4 24.6 244 9-257 93-363 (390)
3 PF01403 Sema: Sema domain; I 100.0 2.6E-55 5.7E-60 447.3 23.7 245 8-257 127-396 (433)
4 cd05872 Ig_Sema4B_like Immunog 99.6 4.8E-16 1E-20 124.4 8.6 78 279-367 3-84 (85)
5 cd05873 Ig_Sema4D_like Immunog 99.3 2.8E-12 6.1E-17 103.1 7.6 75 279-363 3-85 (87)
6 cd04979 Ig_Semaphorin_C Immuno 99.2 4.2E-11 9.1E-16 95.6 8.5 83 278-367 2-88 (89)
7 cd05871 Ig_Semaphorin_classIII 99.1 4.2E-10 9.1E-15 91.0 9.9 85 278-367 2-90 (91)
8 cd04969 Ig5_Contactin_like Fif 98.9 2.5E-09 5.5E-14 82.1 7.1 69 287-365 1-73 (73)
9 cd05852 Ig5_Contactin-1 Fifth 98.9 4E-09 8.7E-14 81.7 7.0 68 287-364 1-72 (73)
10 cd05745 Ig3_Peroxidasin Third 98.9 4.3E-09 9.3E-14 81.1 6.7 70 286-365 1-74 (74)
11 cd05851 Ig3_Contactin-1 Third 98.9 8.8E-09 1.9E-13 82.4 8.3 78 278-365 7-87 (88)
12 cd05737 Ig_Myomesin_like_C C-t 98.9 7.9E-09 1.7E-13 83.1 7.5 77 279-365 8-92 (92)
13 cd04973 Ig1_FGFR First immunog 98.8 1.2E-08 2.5E-13 79.9 7.8 74 281-365 3-79 (79)
14 cd05894 Ig_C5_MyBP-C C5 immuno 98.8 1.6E-08 3.5E-13 80.6 8.8 78 279-365 2-86 (86)
15 cd05762 Ig8_MLCK Eighth immuno 98.8 2.3E-08 4.9E-13 81.8 9.3 82 279-370 7-95 (98)
16 cd05867 Ig4_L1-CAM_like Fourth 98.8 1.7E-08 3.6E-13 78.2 7.5 71 287-365 1-75 (76)
17 cd05728 Ig4_Contactin-2-like F 98.8 2.2E-08 4.7E-13 79.4 7.5 76 279-364 6-84 (85)
18 cd05723 Ig4_Neogenin Fourth im 98.8 2.6E-08 5.6E-13 76.3 7.4 67 289-365 1-71 (71)
19 cd05892 Ig_Myotilin_C C-termin 98.8 1.9E-08 4.2E-13 78.4 6.7 67 290-365 1-75 (75)
20 cd04975 Ig4_SCFR_like Fourth i 98.8 3.3E-08 7.1E-13 81.6 8.4 77 279-365 10-99 (101)
21 cd04968 Ig3_Contactin_like Thi 98.8 3.6E-08 7.7E-13 78.3 8.0 77 279-365 8-87 (88)
22 PF07679 I-set: Immunoglobulin 98.7 4.3E-08 9.4E-13 77.4 8.2 77 279-365 7-90 (90)
23 cd05740 Ig_CEACAM_D4 Fourth im 98.7 3.9E-08 8.6E-13 79.3 7.6 74 280-365 11-90 (91)
24 cd05747 Ig5_Titin_like M5, fif 98.7 4.8E-08 1E-12 78.4 7.9 67 279-355 10-80 (92)
25 cd05724 Ig2_Robo Second immuno 98.7 5.4E-08 1.2E-12 76.4 8.0 68 279-355 3-72 (86)
26 cd05866 Ig1_NCAM-2 First immun 98.7 6.5E-08 1.4E-12 78.4 8.5 68 278-355 6-77 (92)
27 cd05857 Ig2_FGFR Second immuno 98.7 4.6E-08 9.9E-13 76.8 7.1 76 280-365 2-85 (85)
28 cd05744 Ig_Myotilin_C_like Imm 98.7 6.5E-08 1.4E-12 75.0 6.9 67 290-365 1-75 (75)
29 cd05856 Ig2_FGFRL1-like Second 98.6 7.4E-08 1.6E-12 74.6 6.7 76 280-365 2-82 (82)
30 cd05853 Ig6_Contactin-4 Sixth 98.6 8.5E-08 1.8E-12 76.8 7.1 74 288-367 1-83 (85)
31 cd05756 Ig1_IL1R_like First im 98.6 1.6E-07 3.4E-12 76.4 8.8 76 279-357 6-83 (94)
32 cd05726 Ig4_Robo Fhird immunog 98.6 1.4E-07 3.1E-12 75.3 8.5 79 287-368 1-84 (90)
33 cd05868 Ig4_NrCAM Fourth immun 98.6 9.2E-08 2E-12 74.3 7.1 71 287-365 1-75 (76)
34 cd05730 Ig3_NCAM-1_like Third 98.6 1.3E-07 2.9E-12 76.0 8.0 79 280-367 11-94 (95)
35 cd04978 Ig4_L1-NrCAM_like Four 98.6 9.3E-08 2E-12 73.3 6.7 71 287-365 1-75 (76)
36 cd05727 Ig2_Contactin-2-like S 98.6 7.8E-08 1.7E-12 78.8 6.5 70 279-355 10-81 (96)
37 cd05765 Ig_3 Subgroup of the i 98.6 2.4E-07 5.2E-12 71.8 8.7 74 287-365 1-81 (81)
38 cd04977 Ig1_NCAM-1_like First 98.6 1.7E-07 3.8E-12 75.5 8.0 76 279-364 7-91 (92)
39 cd05848 Ig1_Contactin-5 First 98.6 8.5E-08 1.8E-12 77.7 6.2 62 286-355 18-80 (94)
40 cd05722 Ig1_Neogenin First imm 98.6 1.3E-07 2.9E-12 76.2 7.1 69 280-356 7-81 (95)
41 cd04976 Ig2_VEGFR Second immun 98.6 8.4E-08 1.8E-12 73.6 5.6 66 290-365 1-69 (71)
42 cd05735 Ig8_DSCAM Eight immuno 98.6 2E-07 4.2E-12 74.6 7.7 75 287-370 1-86 (88)
43 cd05865 Ig1_NCAM-1 First immun 98.6 2.5E-07 5.3E-12 75.6 8.4 79 279-365 7-95 (96)
44 cd05876 Ig3_L1-CAM Third immun 98.6 1.5E-07 3.2E-12 72.0 6.7 67 290-366 1-71 (71)
45 cd05850 Ig1_Contactin-2 First 98.6 1.1E-07 2.3E-12 77.0 6.2 61 287-355 19-80 (94)
46 cd05743 Ig_Perlecan_D2_like Im 98.6 1.1E-07 2.4E-12 74.0 6.0 59 287-355 1-63 (78)
47 cd05757 Ig2_IL1R_like Second i 98.6 2.2E-07 4.7E-12 75.3 7.8 78 281-365 4-90 (92)
48 cd05738 Ig2_RPTP_IIa_LAR_like 98.6 1.4E-07 3.1E-12 72.7 6.3 58 290-355 1-59 (74)
49 cd05870 Ig5_NCAM-2 Fifth immun 98.6 3.3E-07 7.2E-12 74.5 8.7 80 279-364 8-97 (98)
50 cd05746 Ig4_Peroxidasin Fourth 98.6 1.3E-07 2.8E-12 71.9 5.8 56 290-355 1-57 (69)
51 cd05725 Ig3_Robo Third immunog 98.6 1.9E-07 4.1E-12 70.7 6.6 66 290-365 1-69 (69)
52 cd05859 Ig4_PDGFR-alpha Fourth 98.5 3.1E-07 6.8E-12 75.6 8.2 76 281-366 12-100 (101)
53 cd05891 Ig_M-protein_C C-termi 98.5 2.3E-07 4.9E-12 74.8 7.1 75 279-363 8-90 (92)
54 cd05893 Ig_Palladin_C C-termin 98.5 2.1E-07 4.6E-12 72.4 6.5 67 290-365 1-75 (75)
55 cd05845 Ig2_L1-CAM_like Second 98.5 1.9E-07 4.2E-12 76.3 6.5 71 279-357 10-82 (95)
56 cd05748 Ig_Titin_like Immunogl 98.5 3.1E-07 6.8E-12 70.4 7.2 67 289-365 1-74 (74)
57 cd05764 Ig_2 Subgroup of the i 98.5 4.8E-07 1E-11 69.3 8.1 60 287-355 1-61 (74)
58 cd05732 Ig5_NCAM-1_like Fifth 98.5 5E-07 1.1E-11 72.5 8.5 69 279-355 8-83 (96)
59 cd07693 Ig1_Robo First immunog 98.5 7E-07 1.5E-11 71.4 8.6 69 279-355 8-85 (100)
60 cd07702 Ig2_VEGFR-1 Second imm 98.5 2.6E-07 5.6E-12 71.6 5.5 57 290-355 1-57 (72)
61 cd05763 Ig_1 Subgroup of the i 98.5 6.3E-07 1.4E-11 69.0 7.6 69 290-365 1-74 (75)
62 cd04970 Ig6_Contactin_like Six 98.4 5.3E-07 1.2E-11 71.1 6.8 74 288-367 1-83 (85)
63 cd04972 Ig_TrkABC_d4 Fourth do 98.4 1E-06 2.2E-11 70.4 8.5 76 280-365 8-90 (90)
64 cd05858 Ig3_FGFR-2 Third immun 98.4 6.3E-07 1.4E-11 71.7 7.1 63 287-355 1-76 (90)
65 cd05760 Ig2_PTK7 Second immuno 98.4 5.8E-07 1.3E-11 69.9 6.6 57 290-355 1-59 (77)
66 cd05869 Ig5_NCAM-1 Fifth immun 98.4 1.4E-06 3.1E-11 70.6 8.9 76 282-365 11-97 (97)
67 cd05739 Ig3_RPTP_IIa_LAR_like 98.4 8.6E-07 1.9E-11 67.7 6.9 57 287-355 1-57 (69)
68 cd05882 Ig1_Necl-1 First (N-te 98.4 9.8E-07 2.1E-11 71.9 7.5 72 279-355 4-83 (95)
69 cd05864 Ig2_VEGFR-2 Second imm 98.4 4.4E-07 9.6E-12 69.8 5.1 54 291-355 2-55 (70)
70 cd04967 Ig1_Contactin First Ig 98.4 7.5E-07 1.6E-11 71.3 6.5 64 285-356 17-81 (91)
71 cd05758 Ig5_KIRREL3-like Fifth 98.4 1E-06 2.3E-11 71.5 7.4 68 280-355 9-86 (98)
72 cd05736 Ig2_Follistatin_like S 98.4 9.3E-07 2E-11 68.1 6.5 69 290-366 1-74 (76)
73 cd04974 Ig3_FGFR Third immunog 98.4 1.6E-06 3.5E-11 69.4 8.1 75 287-365 1-89 (90)
74 cd05854 Ig6_Contactin-2 Sixth 98.4 1.5E-06 3.1E-11 69.2 7.7 74 288-367 1-83 (85)
75 cd04971 Ig_TrKABC_d5 Fifth dom 98.4 9E-07 1.9E-11 69.9 6.2 55 291-355 2-67 (81)
76 cd05863 Ig2_VEGFR-3 Second imm 98.4 5.3E-07 1.1E-11 68.9 4.7 52 290-355 1-52 (67)
77 cd05731 Ig3_L1-CAM_like Third 98.3 1.1E-06 2.3E-11 66.4 6.0 66 290-365 1-70 (71)
78 cd05896 Ig1_IL1RAPL-1_like Fir 98.3 3.5E-06 7.6E-11 69.8 8.8 86 279-365 7-104 (104)
79 cd05752 Ig1_FcgammaR_like Frst 98.3 2.1E-06 4.6E-11 67.3 6.8 62 279-356 7-68 (78)
80 cd05729 Ig2_FGFR_like Second i 98.3 4.3E-06 9.4E-11 64.8 8.3 75 280-364 2-84 (85)
81 KOG3513|consensus 98.3 5.6E-06 1.2E-10 91.3 11.8 117 227-368 297-423 (1051)
82 cd05849 Ig1_Contactin-1 First 98.2 1.9E-06 4.2E-11 69.7 5.7 60 287-355 19-79 (93)
83 PF00047 ig: Immunoglobulin do 98.2 2E-06 4.4E-11 63.6 4.8 57 287-353 1-64 (64)
84 smart00408 IGc2 Immunoglobulin 98.2 3.8E-06 8.2E-11 60.1 6.0 60 286-355 1-60 (63)
85 cd05734 Ig7_DSCAM Seventh immu 98.2 3.6E-06 7.7E-11 65.5 5.8 63 290-355 1-65 (79)
86 cd05742 Ig1_VEGFR_like First i 98.1 6.9E-06 1.5E-10 64.6 6.9 75 287-364 1-82 (84)
87 KOG4221|consensus 98.1 5.7E-06 1.2E-10 91.5 8.4 91 278-377 243-337 (1381)
88 cd05855 Ig_TrkB_d5 Fifth domai 98.1 3.6E-06 7.9E-11 66.4 4.8 55 291-355 2-65 (79)
89 cd07701 Ig1_Necl-3 First (N-te 98.1 1.2E-05 2.5E-10 65.4 7.6 72 279-356 4-84 (95)
90 PHA02826 IL-1 receptor-like pr 98.1 9.1E-06 2E-10 76.6 7.9 67 282-355 139-209 (227)
91 cd05754 Ig3_Perlecan_like Thir 98.1 6.6E-06 1.4E-10 64.8 5.7 66 279-355 8-73 (85)
92 cd05733 Ig6_L1-CAM_like Sixth 98.1 9E-06 2E-10 63.1 6.3 58 290-355 1-64 (77)
93 cd05749 Ig2_Tyro3_like Second 98.1 6.3E-06 1.4E-10 65.2 5.5 64 279-356 5-69 (81)
94 cd05881 Ig1_Necl-2 First (N-te 98.1 1.9E-05 4.2E-10 64.5 8.4 80 279-365 4-93 (95)
95 cd05874 Ig6_NrCAM Sixth immuno 98.1 1.4E-05 3E-10 62.3 7.1 58 290-355 1-64 (77)
96 smart00410 IG_like Immunoglobu 98.1 3.8E-05 8.1E-10 57.9 9.4 65 281-355 3-72 (86)
97 smart00409 IG Immunoglobulin. 98.1 3.8E-05 8.1E-10 57.9 9.4 65 281-355 3-72 (86)
98 cd05861 Ig1_PDGFR-alphabeta Fr 98.1 1.4E-05 3E-10 63.3 7.0 73 287-365 1-82 (84)
99 cd05875 Ig6_hNeurofascin_like 98.0 1.9E-05 4.1E-10 61.6 7.5 58 290-355 1-64 (77)
100 KOG3513|consensus 98.0 4.9E-05 1.1E-09 84.1 12.9 83 278-370 432-518 (1051)
101 cd05717 Ig1_Necl-1-3_like Firs 98.0 3.6E-05 7.9E-10 61.9 8.2 74 279-355 4-83 (95)
102 cd05750 Ig_Pro_neuregulin Immu 98.0 8.6E-06 1.9E-10 62.1 4.1 57 291-355 2-64 (75)
103 cd07690 Ig1_CD4 First immunogl 97.9 1.5E-05 3.2E-10 65.0 5.3 69 282-355 2-86 (94)
104 cd05895 Ig_Pro_neuregulin-1 Im 97.9 1.5E-05 3.2E-10 61.4 5.1 59 290-355 1-65 (76)
105 cd05773 Ig8_hNephrin_like Eigh 97.9 3.5E-05 7.5E-10 64.1 7.3 72 286-366 22-105 (109)
106 cd05741 Ig_CEACAM_D1_like Firs 97.8 8.8E-05 1.9E-09 58.8 8.2 66 287-355 1-78 (92)
107 PF13895 Ig_2: Immunoglobulin 97.8 8.2E-05 1.8E-09 56.5 7.6 58 282-355 9-66 (80)
108 cd04983 IgV_TCR_alpha_like Imm 97.8 8E-05 1.7E-09 61.0 8.0 74 279-355 5-91 (109)
109 cd05774 Ig_CEACAM_D1 First imm 97.8 0.00011 2.5E-09 61.0 8.5 73 280-355 6-91 (105)
110 cd05880 Ig_EVA1 Immunoglobulin 97.8 0.00016 3.5E-09 60.8 9.4 77 279-355 5-100 (115)
111 cd05898 Ig5_KIRREL3 Fifth immu 97.7 8.9E-05 1.9E-09 60.9 6.8 74 278-355 7-86 (98)
112 cd00099 IgV Immunoglobulin var 97.7 7.1E-05 1.5E-09 60.7 6.2 74 282-357 1-90 (105)
113 PHA02785 IL-beta-binding prote 97.7 0.00041 8.9E-09 68.7 12.9 123 225-355 178-313 (326)
114 cd05899 IgV_TCR_beta Immunoglo 97.7 0.00017 3.8E-09 59.5 8.0 73 279-355 5-93 (110)
115 cd05715 Ig_P0-like Immunoglobu 97.6 0.00014 3.1E-09 60.8 6.6 77 279-355 5-101 (116)
116 cd05862 Ig1_VEGFR First immuno 97.6 0.00019 4.1E-09 57.1 7.0 66 287-355 1-71 (86)
117 cd05714 Ig_CSPGs_LP Immunoglob 97.6 0.00042 9.1E-09 56.8 8.9 82 286-367 1-104 (106)
118 cd05877 Ig_LP_like Immunoglobu 97.6 0.00042 9.1E-09 56.7 8.8 82 286-367 1-104 (106)
119 cd04984 IgV_L_lambda Immunoglo 97.6 0.00029 6.3E-09 57.0 7.6 72 283-355 2-84 (98)
120 cd05775 Ig_SLAM-CD84_like_N N- 97.6 0.00016 3.5E-09 58.8 5.9 79 285-365 2-96 (97)
121 cd05879 Ig_P0 Immunoglobulin ( 97.6 0.00061 1.3E-08 57.6 9.4 76 280-355 6-101 (116)
122 cd05753 Ig2_FcgammaR_like Seco 97.5 9.6E-05 2.1E-09 58.4 4.2 60 283-355 10-69 (83)
123 cd04982 IgV_TCR_gamma Immunogl 97.5 0.00051 1.1E-08 57.2 8.2 75 280-355 6-98 (116)
124 cd05897 Ig2_IL1R2_like Second 97.5 0.00027 5.8E-09 57.7 6.1 68 282-355 5-76 (95)
125 PF07686 V-set: Immunoglobulin 97.5 0.00054 1.2E-08 55.4 7.8 76 279-356 8-101 (114)
126 cd04980 IgV_L_kappa Immunoglob 97.4 0.00061 1.3E-08 55.9 8.0 74 280-355 8-92 (106)
127 cd05718 Ig1_PVR_like First imm 97.4 0.00051 1.1E-08 55.1 7.3 77 288-365 1-97 (98)
128 cd05901 Ig_Versican Immunoglob 97.4 0.00055 1.2E-08 58.1 7.5 81 287-367 2-115 (117)
129 cd05900 Ig_Aggrecan Immunoglob 97.4 0.0013 2.8E-08 55.3 9.3 81 286-366 1-109 (112)
130 cd05878 Ig_Aggrecan_like Immun 97.4 0.00092 2E-08 55.7 8.4 82 286-367 1-108 (110)
131 PHA02785 IL-beta-binding prote 97.4 0.00034 7.4E-09 69.3 6.8 87 270-367 23-118 (326)
132 PHA02826 IL-1 receptor-like pr 97.2 0.00084 1.8E-08 63.3 7.3 92 271-366 20-133 (227)
133 cd05713 Ig_MOG_like Immunoglob 97.2 0.0024 5.3E-08 51.5 9.0 69 287-355 1-86 (100)
134 cd05885 Ig2_Necl-4 Second immu 97.2 0.0013 2.7E-08 52.1 7.1 72 290-365 2-80 (80)
135 cd07706 IgV_TCR_delta Immunogl 97.1 0.0016 3.5E-08 54.2 7.2 75 279-355 6-93 (116)
136 cd05888 Ig1_Nectin-4_like Frst 97.1 0.0031 6.6E-08 51.5 8.5 67 289-355 2-85 (100)
137 cd05902 Ig_Neurocan Immunoglob 97.1 0.0018 3.8E-08 54.3 6.9 81 287-367 2-108 (110)
138 cd07700 IgV_CD8_beta Immunoglo 97.1 0.002 4.4E-08 53.1 7.1 71 282-354 1-92 (107)
139 KOG4221|consensus 97.1 0.0033 7.1E-08 70.4 10.6 99 239-355 113-214 (1381)
140 PHA02987 Ig domain OX-2-like p 97.1 0.0017 3.7E-08 59.1 7.1 89 279-369 22-125 (189)
141 cd05716 Ig_pIgR Immunoglobulin 97.0 0.0022 4.7E-08 51.7 6.9 72 282-355 2-85 (98)
142 cd05720 Ig_CD8_alpha Immunoglo 97.0 0.002 4.4E-08 53.0 6.7 70 283-355 2-90 (104)
143 KOG4222|consensus 97.0 0.00092 2E-08 74.2 5.8 71 278-355 137-208 (1281)
144 cd05751 Ig1_LILRB1_like First 96.9 0.00093 2E-08 53.5 3.8 65 282-356 11-75 (91)
145 KOG4194|consensus 96.9 0.0017 3.6E-08 68.3 6.4 82 280-368 620-706 (873)
146 smart00406 IGv Immunoglobulin 96.9 0.0028 6E-08 48.2 6.0 63 289-352 1-80 (81)
147 cd05759 Ig2_KIRREL3-like Secon 96.9 0.0055 1.2E-07 47.7 7.8 64 290-355 2-67 (82)
148 cd05712 Ig_Siglec_N Immunoglob 96.9 0.004 8.8E-08 52.3 7.3 76 279-354 6-100 (119)
149 PF13927 Ig_3: Immunoglobulin 96.8 0.001 2.3E-08 49.4 3.2 58 290-355 18-75 (75)
150 cd05846 Ig1_MRC-OX-2_like Firs 96.8 0.0074 1.6E-07 48.7 8.0 66 287-355 1-82 (97)
151 cd05887 Ig1_Nectin-3_like Firs 96.7 0.01 2.2E-07 48.5 8.4 68 288-358 1-84 (96)
152 cd05860 Ig4_SCFR Fourth immuno 96.7 0.012 2.7E-07 48.6 8.8 83 280-366 11-100 (101)
153 cd04981 IgV_H Immunoglobulin ( 96.7 0.0054 1.2E-07 51.6 6.6 73 281-354 6-96 (117)
154 cd05889 Ig1_DNAM-1_like First 96.4 0.011 2.3E-07 48.4 6.5 71 289-361 2-87 (96)
155 cd05711 Ig_FcalphaRI Immunoglo 96.3 0.011 2.3E-07 47.8 6.2 65 282-353 10-74 (94)
156 cd00096 Ig Immunoglobulin doma 96.1 0.015 3.3E-07 40.7 5.4 64 290-356 1-65 (74)
157 cd05886 Ig1_Nectin-1_like Firs 96.0 0.041 8.8E-07 45.1 8.2 23 333-355 62-84 (99)
158 PHA02633 hypothetical protein; 95.9 0.019 4.2E-07 43.1 5.2 35 334-368 18-55 (63)
159 cd07694 Ig2_CD4 Second immunog 95.8 0.045 9.9E-07 44.0 7.4 74 283-366 10-86 (88)
160 cd07692 Ig_CD3_epsilon Immunog 95.7 0.045 9.7E-07 41.6 6.4 54 284-357 4-57 (65)
161 PHA03376 BARF1; Provisional 95.0 0.088 1.9E-06 48.3 7.2 75 281-355 20-108 (221)
162 cd05761 Ig2_Necl-1-4_like Seco 94.3 0.3 6.4E-06 38.1 8.0 73 290-365 2-82 (82)
163 cd07705 Ig2_Necl-1 Second immu 94.0 0.39 8.4E-06 37.8 8.1 74 290-365 2-83 (83)
164 cd05883 Ig2_Necl-2 Second immu 92.8 0.54 1.2E-05 37.3 7.0 72 290-365 2-79 (82)
165 cd00098 IgC Immunoglobulin Con 92.7 0.13 2.9E-06 40.5 3.6 68 286-358 12-86 (95)
166 KOG4194|consensus 92.6 1.4 3E-05 47.1 11.7 108 227-355 672-782 (873)
167 PF07354 Sp38: Zona-pellucida- 90.2 0.36 7.9E-06 46.3 4.2 47 302-354 10-57 (271)
168 KOG1480|consensus 89.4 0.15 3.2E-06 55.2 1.1 64 283-355 140-204 (909)
169 KOG4222|consensus 89.0 0.49 1.1E-05 53.4 4.7 81 278-367 231-314 (1281)
170 cd05755 Ig2_ICAM-1_like Second 87.6 0.98 2.1E-05 37.2 4.5 69 283-355 12-83 (100)
171 cd05721 IgV_CTLA-4 Immunoglobu 87.4 2.3 4.9E-05 36.0 6.7 73 280-354 6-94 (115)
172 KOG3515|consensus 86.5 0.49 1.1E-05 51.7 2.8 64 283-356 18-81 (741)
173 cd05771 IgC_Tapasin_R Tapasin- 83.8 8.6 0.00019 32.7 8.8 31 283-314 49-79 (139)
174 cd05884 Ig2_Necl-3 Second immu 82.4 6.6 0.00014 30.8 7.0 66 290-357 2-69 (83)
175 cd07698 IgC_MHC_I_alpha3 Class 81.8 6.2 0.00013 31.3 6.7 61 287-355 14-81 (93)
176 cd05772 IgC_SIRP Signal-regula 80.7 5.8 0.00013 33.1 6.4 82 285-373 19-111 (111)
177 PF11465 Receptor_2B4: Natural 78.2 12 0.00026 31.3 7.3 34 332-365 69-104 (108)
178 PF08204 V-set_CD47: CD47 immu 71.0 3.9 8.4E-05 35.4 2.8 29 287-315 27-57 (130)
179 cd07691 Ig_CD3_gamma_delta Imm 70.2 8.4 0.00018 29.6 4.2 49 287-355 6-54 (69)
180 PHA02982 hypothetical protein; 70.1 8.3 0.00018 36.1 4.9 82 282-365 34-135 (251)
181 PF08205 C2-set_2: CD80-like C 65.5 7.5 0.00016 30.1 3.3 67 287-356 14-83 (89)
182 PHA03042 CD47-like protein; Pr 64.5 12 0.00025 36.4 4.9 60 286-355 30-91 (286)
183 cd05766 IgC_MHC_II_beta Class 62.8 24 0.00052 28.2 5.9 28 285-315 12-41 (94)
184 cd05770 IgC_beta2m Class I maj 57.8 32 0.00069 27.7 5.7 62 286-355 14-81 (93)
185 cd05767 IgC_MHC_II_alpha Class 54.8 33 0.00071 27.6 5.4 62 287-355 15-82 (94)
186 PHA02914 Immunoglobulin-like d 53.0 37 0.00079 34.9 6.3 72 282-355 274-367 (500)
187 PF07654 C1-set: Immunoglobuli 51.7 29 0.00063 26.6 4.5 28 287-315 8-35 (83)
188 PF06328 Lep_receptor_Ig: Ig-l 47.7 66 0.0014 25.7 6.0 65 281-354 12-82 (89)
189 cd07703 Ig2_Nectin-2_like Seco 47.2 1E+02 0.0023 24.8 7.2 65 289-356 17-81 (95)
190 cd07689 Ig2_VCAM-1 Second immu 45.6 52 0.0011 27.1 5.1 66 284-354 12-83 (99)
191 cd07704 Ig2_Nectin-3-4_like Se 45.5 1.7E+02 0.0036 23.9 8.2 81 282-365 11-97 (97)
192 PF02440 Adeno_E3_CR1: Adenovi 44.9 70 0.0015 24.2 5.3 56 284-347 2-63 (63)
193 KOG3515|consensus 44.6 41 0.00088 37.2 5.6 72 280-356 105-185 (741)
194 cd05719 Ig2_PVR_like Second im 44.2 1.4E+02 0.003 23.9 7.5 63 289-355 17-80 (95)
195 cd05769 IgC_TCR_beta T cell re 39.1 44 0.00096 28.0 3.9 27 286-315 17-45 (115)
196 smart00407 IGc1 Immunoglobulin 38.0 1.3E+02 0.0027 22.6 6.1 25 290-315 2-26 (75)
197 cd07699 IgC_L Immunoglobulin C 32.5 59 0.0013 26.2 3.6 29 286-315 16-44 (100)
198 PHA03290 envelope glycoprotein 29.1 2.4E+02 0.0052 28.3 7.6 47 287-352 99-147 (357)
199 PHA03189 UL14 tegument protein 28.5 2.6E+02 0.0057 27.8 7.7 20 337-356 136-155 (348)
200 PHA03052 Hypothetical protein; 27.8 1.5E+02 0.0033 22.8 4.7 36 280-315 5-40 (69)
201 PF15096 G6B: G6B family 26.6 60 0.0013 29.9 2.8 37 341-377 81-119 (224)
202 PF11049 KSHV_K1: Glycoprotein 26.6 2.4E+02 0.0052 21.6 5.6 64 292-376 3-71 (71)
203 KOG4597|consensus 23.8 92 0.002 32.7 3.9 69 282-355 206-278 (560)
204 cd07696 IgC_CH3 CH3 domain (th 23.7 1.7E+02 0.0037 23.4 4.8 29 286-314 13-41 (96)
205 cd07697 IgC_TCR_gamma T cell r 23.7 1.8E+02 0.0039 23.5 4.9 26 287-315 16-43 (96)
206 PHA03282 envelope glycoprotein 21.9 2.2E+02 0.0048 30.0 6.1 43 326-368 116-163 (540)
207 PF02480 Herpes_gE: Alphaherpe 20.2 34 0.00074 35.6 0.0 41 331-371 86-130 (439)
208 cd05847 IgC_CH2_IgE CH2 domain 20.1 2.4E+02 0.0052 22.4 5.0 26 287-315 14-41 (94)
209 cd04985 IgC_CH1 CH1 domain (fi 20.1 1.6E+02 0.0035 23.5 4.0 26 287-315 16-43 (95)
No 1
>KOG3611|consensus
Probab=100.00 E-value=3.7e-80 Score=654.55 Aligned_cols=349 Identities=42% Similarity=0.785 Sum_probs=298.9
Q ss_pred CeEEEEEccccce----ee------eeeccccccCC--CCCceEEEEEeCCEEEEEEEeccccccccCceeeeeEeeccc
Q psy10772 8 RSLYVASDERIKQ----IA------LVMCAHRYDNC--LQPDFVGSYDIGKYVFFFFRETAVEYINCGKSVFSRVARVCK 75 (378)
Q Consensus 8 ~~l~v~~~~~~~~----~~------~~~rt~~~ds~--~~p~FV~sf~~~d~VYFfF~E~a~e~~~~~~~~~sRVaRVCk 75 (378)
+.||.|+..+=-. ++ ..|||+|||++ |+|+||++++++|+|||||||.++|+.++++.++||||||||
T Consensus 178 ~~Lys~t~~dF~g~d~~I~Rs~g~~~~lrT~~~dskwLneP~FV~a~~i~~~vyFFFrE~a~e~~~~~~~v~sRVARVCk 257 (737)
T KOG3611|consen 178 GELYSGTVADFLGSDALIYRSLGKNPTLRTVKYDSKWLNEPNFVGAFDIGDHVYFFFREIAVENNNCGKAVYSRVARVCK 257 (737)
T ss_pred CEEEEEecccccCCCceEEEecCCCCCceeccCCchhccCCcEEEeeeeCCEEEEEecccccccCcccceEEeeeeeEec
Confidence 3477777543222 22 36899999999 999999999999999999999999977799999999999999
Q ss_pred cccCCcccccccceeeeeeeeeccCCCCCCcccceeeeEEeecC--CCcEEEEEEecccCCCCceeeeeeeHHHHHHHhc
Q psy10772 76 RDTGGKNILSQNWATYLKARLNCSIPGEFPFYFNEIQDIYKVPG--DDTKFYGVFTTSTTGLMGSAICSFSIEDIERAFV 153 (378)
Q Consensus 76 ~D~GG~~~L~~~wtSflKarL~Cs~~g~~~~~fn~lq~v~~~~~--~~~~ly~vFtt~~~~~~~SAVC~ysl~dI~~~F~ 153 (378)
||.||+++|+++|||||||||+||+||+.+||||+||+||.+.. ..++|||+|||+++.+.+||||+|+|+||+++|+
T Consensus 258 nD~GG~~~l~~~WTSFLKARL~CSvp~~~~fyFn~lq~v~~~~~~~~~~~~YgvFtt~~n~~~~SAVC~f~l~dI~~vF~ 337 (737)
T KOG3611|consen 258 NDVGGRRVLEKKWTSFLKARLNCSVPGDSPFYFNELQSVFLLVSLGGRDVFYAVFSTSSNSIPGSAVCAFSLSDIRAVFD 337 (737)
T ss_pred cCCCCceEcccchhHhhhhheecccCCCCCCcccccceeeeccccCCCceEEEEEcccccCcceeEEecCCHHHHHHHhC
Confidence 99999999999999999999999999999999999999986432 2348999999999999999999999999999999
Q ss_pred cccccccCCCCceeeccCCCCCCCCCCCCCC--CCCCCCcccceeeccccCcccccccCCCceeEEec-CCcceEEEEEE
Q psy10772 154 GKFKEQATSTSAWLPVLSSRVPEPRPGQCVN--DTETLPDSVLNFIRSHPLMDEAVAHRDNKPVFYRR-DLLFTHLVVDV 230 (378)
Q Consensus 154 g~f~~~~~~~~~w~~~~~~~vP~prpg~C~~--~s~~~pd~~l~fi~~hpLm~~~V~P~~~~Pll~~~-~~~~T~IaVd~ 230 (378)
|+||++++++++|+++...+||+||||+|++ +++++||++|+|||+||||+++|.|++++|+|++. +.+|||||||+
T Consensus 338 G~fk~q~~~~~~W~pv~~~~vP~PRPG~C~~~~ss~~lpd~vl~Fik~HpLM~~~V~p~~~~P~l~~~~~~~~t~I~Vd~ 417 (737)
T KOG3611|consen 338 GPFKEQKGPNSAWLPVPGDKVPKPRPGTCANNGSSLDLPDDVLNFIKTHPLMDEAVPPVHGRPLLVKTGDYRLTQIVVDR 417 (737)
T ss_pred CccccccCCcccceeccCCcCCCCCCCccCCCCCCCCCChhhhhhhhhCcccccccCCCCCCceEEecccceEEEEEEEE
Confidence 9999999999999997444999999999999 78999999999999999999999999999999998 79999999999
Q ss_pred EEeeeecCCCeEEEEEEECCCeeEEEE-----------------------------------------------------
Q psy10772 231 VQYEVFGTTSEYIVYFAATTTLRTVFV----------------------------------------------------- 257 (378)
Q Consensus 231 v~~~~~~~~~~ytV~flGT~~G~v~~V----------------------------------------------------- 257 (378)
+++. +++|+||||||++|+||||
T Consensus 418 ~~~~----~~~ydVlflGTd~G~vlKvV~~~~~~~~~~~llEElqvf~~~~pI~~m~Ls~~~~~LyVgs~~gV~qvpl~~ 493 (737)
T KOG3611|consen 418 VAGL----DGNYDVLFLGTDAGTVLKVVSPGKESGKSNVLLEELQVFPDAEPIRSMQLSSKRGSLYVGSRSGVVQVPLAR 493 (737)
T ss_pred ecCC----CCcEEEEEEecCCCeEEEEEecCCccCccceeEEEEeecCCCCceeEEEecccCCeEEEEccCcEEEeehhH
Confidence 8876 5999999999999999976
Q ss_pred ----------------------------------eceeeeeccCCCC---Cccccc---------ccceeEEEEeCCeee
Q psy10772 258 ----------------------------------KVRLLQDVSNTSD---SICESS---------VGRLKQTVTWGQSVH 291 (378)
Q Consensus 258 ----------------------------------~~~~lqd~~~~~~---~~C~~~---------~~~k~~~~~~G~s~~ 291 (378)
...++|||+.++| ..|.+. .+++.+..+.+++..
T Consensus 494 C~~y~~C~dcclarDPYCAWd~~~~~C~~~~~~~~rs~~Qd~~~g~p~~~~~C~~~~~~~~~~~~~~~~v~~~~~~~~~~ 573 (737)
T KOG3611|consen 494 CSRYGSCADCCLARDPYCAWDGVNSKCSLLSPTNRRSVIQDVSSGDPSSSLQCPGKPVDSPLVEKVELLVVVPVLAGSEV 573 (737)
T ss_pred hhcccchhhhhhccCCCccccCCCCcceECCCCcccchhhhhcccCccchhhCCCCCcccccccccccccccccccccce
Confidence 1347899999996 678742 123555666666889
Q ss_pred eeeeeccCCCCCCCCeEEEEecccCce-eeEeeccCcceEeecCc-eEEeeecCCCCeEEEEEeCCeeeEEEeeeec
Q psy10772 292 LSCFVKLPASMANQPMSWYHYSKDKGR-YQIKFRSDKFIRTVDGG-LVIMAVEELDAGKYDCWLGNTVLCTHNLTVD 366 (378)
Q Consensus 292 L~C~~r~~~~La~~~v~W~~~~~~~~~-~~l~~~~~~~~~~~~~G-LlI~~v~~~DsG~Y~C~~~~~~l~~~~~~v~ 366 (378)
|+|.+++..+ ++.|+++...+++ +++. .+++...+.+| |+++.+++.|+|.|.|++.+...+...+.+.
T Consensus 574 l~c~~~~~~a----~~~w~~~~~~~~~~~~~~--~~~~~~~~~~G~lll~~~q~~~~G~y~c~~~e~~~~~~~~~~~ 644 (737)
T KOG3611|consen 574 LRCVPSSNQA----PVVWYHQSTKDGRKEEVR--QRDVVSRTDEGGLVLLSVQKLDGGTYPCYADESSFVSTVISVN 644 (737)
T ss_pred eecccccccc----ceeeEeeccCccccceec--cCcceeecccCceeEEEEeeccCcccccccccCccccceEEEe
Confidence 9999987766 5899999766444 3343 55666666677 9999999999999999999944444444443
No 2
>smart00630 Sema semaphorin domain.
Probab=100.00 E-value=7.6e-65 Score=510.38 Aligned_cols=244 Identities=49% Similarity=0.875 Sum_probs=223.2
Q ss_pred eEEEEEccc--ccee--e-------------eeeccccccCC--CCCceEEEEEeCCEEEEEEEeccccccccCceeeee
Q psy10772 9 SLYVASDER--IKQI--A-------------LVMCAHRYDNC--LQPDFVGSYDIGKYVFFFFRETAVEYINCGKSVFSR 69 (378)
Q Consensus 9 ~l~v~~~~~--~~~~--~-------------~~~rt~~~ds~--~~p~FV~sf~~~d~VYFfF~E~a~e~~~~~~~~~sR 69 (378)
.||||+..+ +... . .++||++++++ ++|+||++|..|+||||||+|++.|.+.+++.++||
T Consensus 93 ~ly~gt~~~~~~~~~~i~r~~~~r~l~~~~~~~l~t~~~~~~~l~~~~FV~sf~~~~~vYFff~e~~~e~~~~~~~~~SR 172 (390)
T smart00630 93 ELYVGTVADFSGSDPAIPRSLSVRRLKGTSGVSLRTVLYDSKWLNEPNFVYAFESGDFVYFFFRETAVEDDNCGKAVHSR 172 (390)
T ss_pred ceEEEEecccCCCCcceeccccccccccccCceeeccccCcccccCCcEEEEEEcCCEEEEEEEEEccccCcCCceeeee
Confidence 699999876 2222 1 16799999999 999999999999999999999999988899999999
Q ss_pred EeeccccccCCcccccccceeeeeeeeeccCCCCCCcccceeeeEEeecC---CCcEEEEEEecccCCCCceeeeeeeHH
Q psy10772 70 VARVCKRDTGGKNILSQNWATYLKARLNCSIPGEFPFYFNEIQDIYKVPG---DDTKFYGVFTTSTTGLMGSAICSFSIE 146 (378)
Q Consensus 70 VaRVCk~D~GG~~~L~~~wtSflKarL~Cs~~g~~~~~fn~lq~v~~~~~---~~~~ly~vFtt~~~~~~~SAVC~ysl~ 146 (378)
||||||+|.||+++|+++||||+||||+|+.+|+.+++||+|||||+++. ++++|||||+++++++.+||||+|+|+
T Consensus 173 VaRVCk~D~Gg~~~l~~~wtSflka~L~Cs~~g~~~~~fn~lQ~v~~~~~g~~~~~vlygvFst~~~~~~~SAvC~f~l~ 252 (390)
T smart00630 173 VARVCKNDVGGPRSLDKKWTSFLKARLECSVPGESPFYFNELQAAFLLPPGSESDDVLYGVFSTSSNPIPGSAVCAFSLK 252 (390)
T ss_pred eeeecccCcCccccccccccEEEEEEEEecCCCcCCccchhhhheeecccCCCCCCEEEEEEeCCCCCCCccEEEEeEHH
Confidence 99999999999999999999999999999999988899999999999764 578999999999999999999999999
Q ss_pred HHHHHhccccccccCCCCceeeccCCCCCCCCCCCCCC---CCCCCCcccceeeccccCcccccccCCCceeEEec--CC
Q psy10772 147 DIERAFVGKFKEQATSTSAWLPVLSSRVPEPRPGQCVN---DTETLPDSVLNFIRSHPLMDEAVAHRDNKPVFYRR--DL 221 (378)
Q Consensus 147 dI~~~F~g~f~~~~~~~~~w~~~~~~~vP~prpg~C~~---~s~~~pd~~l~fi~~hpLm~~~V~P~~~~Pll~~~--~~ 221 (378)
||+++|+|+|+++.+.+++|..+..+.+|+||||+|.+ ++.++||++++|++.||||.+.|.|+.++|||++. +.
T Consensus 253 ~I~~~F~~~~~~~~~~~~~~~~~~~~~vp~~rpg~C~~~~~~~~~~pd~~~~~~~~~pl~~~~v~p~~~~pl~~~~~~~~ 332 (390)
T smart00630 253 DINAVFNGPFKECETSTSQWLPYSRGKVPFPRPGTCPNKPPSSKDLPDEVLNFIKSHPLMDEVVQPLTGRPLFVKTDSNY 332 (390)
T ss_pred HHHHHHhhhhhhccCcCcceecccCCcCCCCCCCcCCCCCcccccCCchhhccccccccccccccccCCcceEEecCccc
Confidence 99999999999999888999875588999999999998 45589999999999999999999999999999985 56
Q ss_pred cceEEEEEEEEeeeecCCCeEEEEEEECCCeeEEEE
Q psy10772 222 LFTHLVVDVVQYEVFGTTSEYIVYFAATTTLRTVFV 257 (378)
Q Consensus 222 ~~T~IaVd~v~~~~~~~~~~ytV~flGT~~G~v~~V 257 (378)
+||+||||+|+ . .++|+|+||||++|+||||
T Consensus 333 ~lT~IaVd~v~-~----~~~~tV~flGT~~G~i~Kv 363 (390)
T smart00630 333 LLTSIAVDRVA-T----DGNYTVLFLGTSDGRILKV 363 (390)
T ss_pred cEEEEEEEEEc-c----CCcEEEEEEECCCCeEEEE
Confidence 89999999986 3 3589999999999999999
No 3
>PF01403 Sema: Sema domain; InterPro: IPR001627 The Sema domain occurs in semaphorins, which are a large family of secreted and transmembrane proteins, some of which function as repellent signals during axon guidance. Sema domains also occur in a hepatocyte growth factor receptor, in SEX protein [] and in viral proteins. CD100 (also called SEMA4D) is associated with PTPase and serine kinase activity. CD100 increases PMA, CD3 and CD2 induced T cell proliferation, increases CD45 induced T cell adhesion, induces B cell homotypic adhesion and down-regulates B cell expression of CD23. The Sema domain is characterised by a conserved set of cysteine residues, which form four disulphide bonds to stabilise the structure. The Sema domain fold is a variation of the beta propeller topology, with seven blades radially arranged around a central axis. Each blade contains a four- stranded (strands A to D) antiparallel beta sheet. The inner strand of each blade (A) lines the channel at the centre of the propeller, with strands B and C of the same repeat radiating outward, and strand D of the next repeat forming the outer edge of the blade. The large size of the Sema domain is not due to a single inserted domain but results from the presence of additional secondary structure elements inserted in most of the blades. The Sema domain uses a 'loop and hook' system to close the circle between the first and the last blades. The blades are constructed sequentially with an N-terminal beta- strand closing the circle by providing the outermost strand (D) of the seventh (C-terminal) blade. The beta-propeller is further stabilised by an extension of the N terminus, providing an additional, fifth beta-strand on the outer edge of blade 6 [, , ]. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0005515 protein binding; PDB: 3NVX_A 3NVQ_A 3OL2_A 1OLZ_B 3OKT_A 3AL9_B 3OKY_A 3AL8_B 3NVN_A 3OKW_A ....
Probab=100.00 E-value=2.6e-55 Score=447.31 Aligned_cols=245 Identities=47% Similarity=0.831 Sum_probs=218.1
Q ss_pred CeEEEEEcccccee----e------eeeccccccCC--CCCceEEEEEeC-------CEEEEEEEeccccccccCceeee
Q psy10772 8 RSLYVASDERIKQI----A------LVMCAHRYDNC--LQPDFVGSYDIG-------KYVFFFFRETAVEYINCGKSVFS 68 (378)
Q Consensus 8 ~~l~v~~~~~~~~~----~------~~~rt~~~ds~--~~p~FV~sf~~~-------d~VYFfF~E~a~e~~~~~~~~~s 68 (378)
+.||||+..+.... . ..++|..++++ ++|+||++|.++ +||||||+|.+.|....++.++|
T Consensus 127 ~~lyvgt~~~~~~~~~~i~R~~~~~~~l~~~~~~~~~~~~p~fv~~~~~~~v~~f~~~~vYF~f~e~~~~~~~~~~~~~s 206 (433)
T PF01403_consen 127 GELYVGTTYDFSGSSPIISRSLGSQPPLRTEQYDSKWLNEPSFVSSFEIGYVYGFSDDFVYFFFRERASEYDSCGKPYYS 206 (433)
T ss_dssp TEEEEEEESSTTSSSEEEEEEETSSSTEESCCCCTTSSSSTEEEEEEEEEECEEEETTEEEEEEEEEESSSSTSSCCEEE
T ss_pred ccEEEeeeccccCCCcceeecccccccccccccccccccccccccccccccccccCCcEEEEEEEeecccccccccccee
Confidence 78999998774332 1 24678888877 899999999998 99999999999998878899999
Q ss_pred eEeeccccccCCcccccccceeeeeeeeeccCCC-CCCcccceeeeEEeecC---CCcEEEEEEecccCCCCceeeeeee
Q psy10772 69 RVARVCKRDTGGKNILSQNWATYLKARLNCSIPG-EFPFYFNEIQDIYKVPG---DDTKFYGVFTTSTTGLMGSAICSFS 144 (378)
Q Consensus 69 RVaRVCk~D~GG~~~L~~~wtSflKarL~Cs~~g-~~~~~fn~lq~v~~~~~---~~~~ly~vFtt~~~~~~~SAVC~ys 144 (378)
|||||||+|.||.+.++++|+||+||||+|+.+| ..+++||+||+++.++. .+++|||+|++++++.++||||+|+
T Consensus 207 rvaRvCk~D~g~~~~~e~~wttf~karL~C~~~~~~~~~~fn~lq~~~~~~~~~~~~~vlyavFt~~~~~~~~SAvC~ys 286 (433)
T PF01403_consen 207 RVARVCKNDPGGYSYLEPLWTTFLKARLNCSVPGDGSPFYFNELQAVFVSKPGSGDDDVLYAVFTTSWNSSPGSAVCAYS 286 (433)
T ss_dssp EEEEEETTSSTBSSSCCTBESSEEEEEEECEETTCSCTEECHEEEEEEEEECTTTTSEEEEEEEEESSSSSSCEEEEEEE
T ss_pred eeeeccccCCccccchhhccccccccceeccccCcCCCchhhhhhhhccccccccCCceEEEEEEecccccCCceEEEEE
Confidence 9999999999999888899999999999999998 67899999999999875 3579999999999988999999999
Q ss_pred HHHHHHHhccccccccCCCCceeeccCCCCCCCCCCCCCCCCCCCCcccceeeccccCcccccccCCCceeEEecCC--c
Q psy10772 145 IEDIERAFVGKFKEQATSTSAWLPVLSSRVPEPRPGQCVNDTETLPDSVLNFIRSHPLMDEAVAHRDNKPVFYRRDL--L 222 (378)
Q Consensus 145 l~dI~~~F~g~f~~~~~~~~~w~~~~~~~vP~prpg~C~~~s~~~pd~~l~fi~~hpLm~~~V~P~~~~Pll~~~~~--~ 222 (378)
|+||+++|+|+|+++.+..+.|+++ .+.+|+|||+.|.+.+..++++++.|++.||||.+.|.|+.++|+|++.+. +
T Consensus 287 l~~I~~~F~g~~~~~~~~~~~~~~~-~~~~~~~~p~~C~~~~~~~~~~~~~~~~~~~l~~~~v~~~~~~p~~~~~~~~~~ 365 (433)
T PF01403_consen 287 LSDINQAFNGPFKCCDGSTSKWLPY-PNSVPSPRPGQCPNSSSNLPDETLCFIKNHPLMDESVQPISGQPLFTRQGVNYR 365 (433)
T ss_dssp HHHHHHHHCSHBEECCSCHTTBCCT-TSCCCSSSTTC-TTSTTGSHHHHHHHHHHSSBBCSEBS-CCGSCSEEEETSSS-
T ss_pred HHHHHHHhhcchhhcccccCccccc-cCcccCCcccccccccccCccccccccccccCccccccCCCCcceeeeccccce
Confidence 9999999999999998788999985 559999999999999888999999999999999999999999999999876 8
Q ss_pred ceEEEEEEEEeeeecCCCeEEEEEEECCCeeEEEE
Q psy10772 223 FTHLVVDVVQYEVFGTTSEYIVYFAATTTLRTVFV 257 (378)
Q Consensus 223 ~T~IaVd~v~~~~~~~~~~ytV~flGT~~G~v~~V 257 (378)
||+|+|++|++. ++.|+|+||||++|+|||+
T Consensus 366 ~T~i~v~~v~~~----~~~~tV~flGT~~G~l~K~ 396 (433)
T PF01403_consen 366 LTSIAVDRVQVE----NGSYTVAFLGTDDGRLHKK 396 (433)
T ss_dssp EEEEEEEEEEET----TTCEEEEEEEETTSEEEEE
T ss_pred eeEEEEEEEecC----CCcEEEEEEecCCceEEEE
Confidence 999999987765 3449999999999999964
No 4
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=99.65 E-value=4.8e-16 Score=124.41 Aligned_cols=78 Identities=21% Similarity=0.374 Sum_probs=70.0
Q ss_pred ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCC---
Q psy10772 279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGN--- 355 (378)
Q Consensus 279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~--- 355 (378)
.|.+++..|++++|+|.++++.| .+.|++|+.+ |. +++++..+.+||||++++.+|+|.|.|++.|
T Consensus 3 ~~~~tv~~g~~v~L~C~~~s~~A----~v~W~~ng~~-----l~--~~~r~~~~~~GLlI~~~~~~dsG~Y~C~s~E~gf 71 (85)
T cd05872 3 VKNRTVAPGADVVLPCQLRSNLA----SPVWLFNGTP-----LN--AQFSYRVGTDGLLILVTSPEHSGTYRCYSEEEGF 71 (85)
T ss_pred ceEEEEecCCCEEEECCCCCCCc----cEEEEECCcc-----cC--CCcceEEeCCCCEEEECCHhhCEEEEEEEecCCC
Confidence 46889999999999999988755 7999999876 54 6778999999999999999999999999998
Q ss_pred -eeeEEEeeeecc
Q psy10772 356 -TVLCTHNLTVDA 367 (378)
Q Consensus 356 -~~l~~~~~~v~~ 367 (378)
+++++|.|.|-+
T Consensus 72 ~~~~~~y~l~v~~ 84 (85)
T cd05872 72 QQLVASYSLNVVE 84 (85)
T ss_pred eEEEEEEEEEEeC
Confidence 999999998854
No 5
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=99.34 E-value=2.8e-12 Score=103.10 Aligned_cols=75 Identities=23% Similarity=0.350 Sum_probs=61.6
Q ss_pred ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCC---
Q psy10772 279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGN--- 355 (378)
Q Consensus 279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~--- 355 (378)
.+.+++.+|+++.|.|.+.++ + |+|+|++|+.+ |.. .+.++...+++|+|.+++.+|+|.|+|.+.+
T Consensus 3 P~~~~v~~G~~v~L~C~~~~~--~--~~i~W~~ng~~-----i~~-~~~r~~~~~~~L~I~nv~~~DsG~Y~C~a~e~~~ 72 (87)
T cd05873 3 PRQRTFKLGNNAELKCSPKSN--L--ARVVWKFDGKV-----LTP-ESAKYLLYRDGLLIFNASEADAGRYQCLSVEKSK 72 (87)
T ss_pred cceEEEECCCCEEEEEECCCC--C--CeEEEEECCEE-----CCC-CCceEEEECCcEEEeCCCHHHCEEEEEEEEeccc
Confidence 467889999999999998654 2 47999999865 431 2246777889999999999999999999998
Q ss_pred -----eeeEEEee
Q psy10772 356 -----TVLCTHNL 363 (378)
Q Consensus 356 -----~~l~~~~~ 363 (378)
++++.|.|
T Consensus 73 ~~~~~~~~~~~~~ 85 (87)
T cd05873 73 AKLFTQTVAKYVL 85 (87)
T ss_pred CceeEeEEEeeee
Confidence 47888887
No 6
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=99.23 E-value=4.2e-11 Score=95.61 Aligned_cols=83 Identities=28% Similarity=0.343 Sum_probs=65.2
Q ss_pred cceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCC--
Q psy10772 278 GRLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGN-- 355 (378)
Q Consensus 278 ~~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~-- 355 (378)
..+.+.+.+|+++.|+|.+++|. +.+.|++|+.......+ ...++.....+|+|.+++.+|+|.|.|.+.+
T Consensus 2 ~~~~~~v~~g~~v~L~C~~~~p~----~~i~W~k~~~~~~~~~~---~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~~~ 74 (89)
T cd04979 2 EEKVVTVVEGNSVFLECSPKSNL----ASVVWLFQGGPLQRKEE---PEERLLVTEDGLLIRSVSPADAGVYTCQSVEHG 74 (89)
T ss_pred cceEEEEECCCcEEEEEeCCCCC----ceEEEEECCcccccccC---cCceEEEcCCCEEEccCCHHHCEEEEEEEecCc
Confidence 35778899999999999987643 48999999865211000 1245666778999999999999999999987
Q ss_pred --eeeEEEeeeecc
Q psy10772 356 --TVLCTHNLTVDA 367 (378)
Q Consensus 356 --~~l~~~~~~v~~ 367 (378)
...++|.|.|.+
T Consensus 75 ~~~~~~~~~l~V~~ 88 (89)
T cd04979 75 FKQTLATYSLNVLE 88 (89)
T ss_pred cceeEeEEEEEEec
Confidence 499999999986
No 7
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=99.12 E-value=4.2e-10 Score=91.00 Aligned_cols=85 Identities=20% Similarity=0.318 Sum_probs=64.7
Q ss_pred cceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCC--
Q psy10772 278 GRLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGN-- 355 (378)
Q Consensus 278 ~~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~-- 355 (378)
+++.+++.+|+++.|+|..+.| .|.+.|+.+....... .....+.++...+.+|.|.+++.+|+|.|.|.+.+
T Consensus 2 ~~~~~~~~eG~~v~L~C~~~~p----~p~v~Wykq~~g~~~~-~~~~~~~r~~~~~~~L~I~~~~~~DsG~Y~C~a~~~~ 76 (91)
T cd05871 2 EEKVVYGVENNSTFLECLPKSP----QASVKWLFQRGGDQRK-EEVKTEERLIHTERGLLLRSLQRSDAGVYTCTAVEHS 76 (91)
T ss_pred cceEEEEecCCcEEEEEECCCC----CceEEEEEECCCCCcc-ccccccccEEEecCeEEEeeCChhHCEEEEEEEEccC
Confidence 4678899999999999997533 2589999875432110 11113456777888999999999999999999975
Q ss_pred --eeeEEEeeeecc
Q psy10772 356 --TVLCTHNLTVDA 367 (378)
Q Consensus 356 --~~l~~~~~~v~~ 367 (378)
++++.+.|+|-.
T Consensus 77 ~~~~~~~~~l~v~~ 90 (91)
T cd05871 77 FSQTLAKYTLHVIE 90 (91)
T ss_pred CeEEEEEEEEEEec
Confidence 789999998854
No 8
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=98.94 E-value=2.5e-09 Score=82.08 Aligned_cols=69 Identities=29% Similarity=0.464 Sum_probs=51.8
Q ss_pred CCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCc-eEEeeecCCCCeEEEEEeCC---eeeEEEe
Q psy10772 287 GQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGG-LVIMAVEELDAGKYDCWLGN---TVLCTHN 362 (378)
Q Consensus 287 G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~G-LlI~~v~~~DsG~Y~C~~~~---~~l~~~~ 362 (378)
|+++.|.|.+.+.+. |.++|++++.+ +. .++++...+.| |+|.+|+.+|+|.|.|.+.| ...++..
T Consensus 1 G~~v~L~C~~~g~P~---p~v~W~k~~~~-----~~--~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~ 70 (73)
T cd04969 1 GGDVIIECKPKAAPK---PTISWSKGTEL-----LT--NSSRICIWPDGSLEILNVTKSDEGKYTCFAENFFGKANSTGS 70 (73)
T ss_pred CCeEEEEEeeeEcCC---CEEEEEECCEE-----cc--cCCCEEECCCCeEEEccCChhHCEEEEEEEECCCCceEEEEE
Confidence 788999999876543 68999988653 43 44455544444 99999999999999999998 5556666
Q ss_pred eee
Q psy10772 363 LTV 365 (378)
Q Consensus 363 ~~v 365 (378)
|.|
T Consensus 71 l~V 73 (73)
T cd04969 71 LSV 73 (73)
T ss_pred EEC
Confidence 554
No 9
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=98.90 E-value=4e-09 Score=81.65 Aligned_cols=68 Identities=28% Similarity=0.478 Sum_probs=50.0
Q ss_pred CCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeec-CceEEeeecCCCCeEEEEEeCC---eeeEEEe
Q psy10772 287 GQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVD-GGLVIMAVEELDAGKYDCWLGN---TVLCTHN 362 (378)
Q Consensus 287 G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~-~GLlI~~v~~~DsG~Y~C~~~~---~~l~~~~ 362 (378)
|+++.|+|.+++.|. |.|+|+.++.. +. ++.++.+.. .-|.|.+++.+|+|.|.|.+.| ....+-.
T Consensus 1 G~~~~l~C~~~g~P~---p~v~W~k~~~~-----l~--~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~ 70 (73)
T cd05852 1 GGRVIIECKPKAAPK---PKFSWSKGTEL-----LV--NNSRISIWDDGSLEILNITKLDEGSYTCFAENNRGKANSTGV 70 (73)
T ss_pred CCeEEEEEecceeCC---CEEEEEeCCEe-----cc--cCCCEEEcCCCEEEECcCChhHCEEEEEEEECCCCceeEEEE
Confidence 788999999876543 68999987643 42 445555544 4599999999999999999998 3444444
Q ss_pred ee
Q psy10772 363 LT 364 (378)
Q Consensus 363 ~~ 364 (378)
|+
T Consensus 71 l~ 72 (73)
T cd05852 71 LS 72 (73)
T ss_pred EE
Confidence 43
No 10
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=98.89 E-value=4.3e-09 Score=81.10 Aligned_cols=70 Identities=26% Similarity=0.344 Sum_probs=51.4
Q ss_pred eCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEe-ecCceEEeeecCCCCeEEEEEeCC---eeeEEE
Q psy10772 286 WGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRT-VDGGLVIMAVEELDAGKYDCWLGN---TVLCTH 361 (378)
Q Consensus 286 ~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~-~~~GLlI~~v~~~DsG~Y~C~~~~---~~l~~~ 361 (378)
+|+++.|.|...+.|. |.++|+.++.+ +. .+.++.. ...-|.|.+++..|+|.|.|.+.| ..-++.
T Consensus 1 eG~~v~l~C~~~g~P~---p~i~W~k~g~~-----~~--~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~ 70 (74)
T cd05745 1 EGQTVDFLCEAQGYPQ---PVIAWTKGGSQ-----LS--VDRRHLVLSSGTLRISRVALHDQGQYECQAVNIVGSQRTVA 70 (74)
T ss_pred CCCeEEEEeECCEecC---CEEEEEECCEE-----CC--CCCCeEEccCCeEEEeeCCHHhCEEEEEEEEeCCCceeEEE
Confidence 5899999999876654 78999987653 32 3334433 344599999999999999999998 455555
Q ss_pred eeee
Q psy10772 362 NLTV 365 (378)
Q Consensus 362 ~~~v 365 (378)
.|+|
T Consensus 71 ~L~V 74 (74)
T cd05745 71 QLTV 74 (74)
T ss_pred EEeC
Confidence 5543
No 11
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=98.87 E-value=8.8e-09 Score=82.40 Aligned_cols=78 Identities=21% Similarity=0.264 Sum_probs=57.6
Q ss_pred cceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCC--
Q psy10772 278 GRLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGN-- 355 (378)
Q Consensus 278 ~~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~-- 355 (378)
..+.+.+.+|+++.|.|...+.+. |.|+|+.++.+ +. .+.++...+.-|.|.+++.+|+|.|.|.+.|
T Consensus 7 ~~~~~~~~~G~~v~l~C~~~G~P~---P~v~W~k~~~~-----~~--~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~ 76 (88)
T cd05851 7 KFKDTYALKGQNVTLECFALGNPV---PVIRWRKILEP-----MP--ATAEISMSGAVLKIFNIQPEDEGTYECEAENIK 76 (88)
T ss_pred ccccEEEeCCCcEEEEEEecccCC---CEEEEEECCcC-----CC--CCCEEecCCCEEEECcCChhhCEEEEEEEEcCC
Confidence 356778899999999999876655 78999988754 32 2333444444599999999999999999998
Q ss_pred -eeeEEEeeee
Q psy10772 356 -TVLCTHNLTV 365 (378)
Q Consensus 356 -~~l~~~~~~v 365 (378)
..-++-.|.|
T Consensus 77 G~~~~~~~l~V 87 (88)
T cd05851 77 GKDKHQARVYV 87 (88)
T ss_pred CceEEEEEEEE
Confidence 4444444544
No 12
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=98.86 E-value=7.9e-09 Score=83.07 Aligned_cols=77 Identities=22% Similarity=0.327 Sum_probs=56.3
Q ss_pred ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEe-ec----CceEEeeecCCCCeEEEEEe
Q psy10772 279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRT-VD----GGLVIMAVEELDAGKYDCWL 353 (378)
Q Consensus 279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~-~~----~GLlI~~v~~~DsG~Y~C~~ 353 (378)
.+.+++.+|+++.|.|...+.+. |.+.|+.++.+ +. .++++.. .. .-|.|.+++.+|+|.|.|.+
T Consensus 8 p~~v~v~~G~~v~L~C~v~G~P~---p~v~W~k~g~~-----l~--~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a 77 (92)
T cd05737 8 PDVVTIMEGKTLNLTCTVFGDPD---PEVSWLKNDQA-----LA--LSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVV 77 (92)
T ss_pred CceEEEeCCCcEEEEEEEEecCC---CeEEEEECCEE-----Cc--cCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEE
Confidence 34678999999999999875544 68999998754 32 2332222 12 13999999999999999999
Q ss_pred CC---eeeEEEeeee
Q psy10772 354 GN---TVLCTHNLTV 365 (378)
Q Consensus 354 ~~---~~l~~~~~~v 365 (378)
.| ...+.+.|.|
T Consensus 78 ~N~~G~~~~~~~v~v 92 (92)
T cd05737 78 KNKYGGETVDVTVSV 92 (92)
T ss_pred EECCCcceEEEEEeC
Confidence 97 6666666654
No 13
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=98.84 E-value=1.2e-08 Score=79.92 Aligned_cols=74 Identities=16% Similarity=0.277 Sum_probs=55.1
Q ss_pred eEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCC---ee
Q psy10772 281 KQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGN---TV 357 (378)
Q Consensus 281 ~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~---~~ 357 (378)
.+.+.+|+++.|.|....+. +.|.|+.++.+ |. .+.++...+.-|.|.+++..|+|.|.|.+.| ..
T Consensus 3 ~~~~~~G~~v~l~C~~~~~~----~~v~W~k~g~~-----l~--~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~n~~g~~ 71 (79)
T cd04973 3 SYSAHPGDLLQLRCRLRDDV----QSINWTKDGVQ-----LG--ENNRTRITGEEVQIKDAVPRDSGLYACVTSSPSGSD 71 (79)
T ss_pred cEEecCCCCEEEEEEecCCC----ceEEEeeCCcC-----CC--CCceEEEeCCEEEECCCChhhCEEEEEEEeCCCCcc
Confidence 46778999999999987642 47999998765 53 4445555566699999999999999999976 33
Q ss_pred eEEEeeee
Q psy10772 358 LCTHNLTV 365 (378)
Q Consensus 358 l~~~~~~v 365 (378)
...+.|+|
T Consensus 72 ~~~~~v~V 79 (79)
T cd04973 72 TTYFSVNV 79 (79)
T ss_pred cEEEEEeC
Confidence 44444443
No 14
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=98.84 E-value=1.6e-08 Score=80.62 Aligned_cols=78 Identities=18% Similarity=0.212 Sum_probs=58.1
Q ss_pred ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEee--c--CceEEeeecCCCCeEEEEEeC
Q psy10772 279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTV--D--GGLVIMAVEELDAGKYDCWLG 354 (378)
Q Consensus 279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~--~--~GLlI~~v~~~DsG~Y~C~~~ 354 (378)
.+.+.+..|+.+.|.|...+.|. |.|+|+.++.+ |.. .++++... + .-|.|.++..+|+|.|.|.+.
T Consensus 2 ~~~~~v~~G~~v~l~c~~~G~P~---P~v~W~k~~~~-----i~~-~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~ 72 (86)
T cd05894 2 ENTIVVVAGNKLRLDVPISGEPA---PTVTWSRGDKA-----FTE-TEGRVRVESYKDLSSFVIEGAEREDEGVYTITVT 72 (86)
T ss_pred CCEEEEEcCCEEEEEeeEeecCC---CeEEEEECCEE-----Ccc-CCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEE
Confidence 35788999999999999876544 78999988754 321 12233322 1 249999999999999999999
Q ss_pred C---eeeEEEeeee
Q psy10772 355 N---TVLCTHNLTV 365 (378)
Q Consensus 355 ~---~~l~~~~~~v 365 (378)
| ..-++..|+|
T Consensus 73 N~~G~~~~~~~l~V 86 (86)
T cd05894 73 NPVGEDHASLFVKV 86 (86)
T ss_pred eCCCcEEEEEEEEC
Confidence 8 6667777765
No 15
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=98.82 E-value=2.3e-08 Score=81.80 Aligned_cols=82 Identities=24% Similarity=0.299 Sum_probs=64.1
Q ss_pred ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEee----cCceEEeeecCCCCeEEEEEeC
Q psy10772 279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTV----DGGLVIMAVEELDAGKYDCWLG 354 (378)
Q Consensus 279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~----~~GLlI~~v~~~DsG~Y~C~~~ 354 (378)
.+.+.+..|+++.|.|...+-+. |.+.|+.++++ |. .++++... ..-|.|.++...|+|.|.|.+.
T Consensus 7 p~~~~v~~G~~v~l~C~~~G~p~---p~v~W~kdg~~-----l~--~~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~ 76 (98)
T cd05762 7 PEDMKVRAGESVELFCKVTGTQP---ITCTWMKFRKQ-----IQ--EGEGIKIENTENSSKLTITEGQQEHCGCYTLEVE 76 (98)
T ss_pred CcCEEEECCCEEEEEEEEcccCC---CceEEEECCEE-----ec--CCCcEEEEecCCeeEEEECCCChhhCEEEEEEEE
Confidence 45678899999999999975543 68999988764 43 33343332 2239999999999999999999
Q ss_pred C---eeeEEEeeeeccccc
Q psy10772 355 N---TVLCTHNLTVDAHSN 370 (378)
Q Consensus 355 ~---~~l~~~~~~v~~~~c 370 (378)
| ..-++..|+|.+.+.
T Consensus 77 N~~G~~~~~~~l~V~~~P~ 95 (98)
T cd05762 77 NKLGSRQAQVNLTVVDKPD 95 (98)
T ss_pred cCCCceeEEEEEEEecCCC
Confidence 8 788899999998763
No 16
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=98.81 E-value=1.7e-08 Score=78.21 Aligned_cols=71 Identities=23% Similarity=0.404 Sum_probs=52.4
Q ss_pred CCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeec-cCcceEeecCceEEeeecCCCCeEEEEEeCC---eeeEEEe
Q psy10772 287 GQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFR-SDKFIRTVDGGLVIMAVEELDAGKYDCWLGN---TVLCTHN 362 (378)
Q Consensus 287 G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~-~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~---~~l~~~~ 362 (378)
|+++.|.|...+.|. |.++|+.++.+ +... ...++...+..|.|.+++.+|+|.|.|.+.| ...+.-.
T Consensus 1 G~~v~l~C~~~G~P~---p~i~W~k~g~~-----i~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 72 (76)
T cd05867 1 GETARLDCQVEGIPT---PNITWSINGAP-----IEGTDPDPRRHVSSGALILTDVQPSDTAVYQCEARNRHGNLLANAH 72 (76)
T ss_pred CCeEEEEEEeeEeCC---CeEEEEECCEE-----CCCCCCCceEEeeCCEEEECCCChhhCEEEEEEEECCCCeEEEEEE
Confidence 789999999876544 68999988754 3211 1224445556699999999999999999998 6666666
Q ss_pred eee
Q psy10772 363 LTV 365 (378)
Q Consensus 363 ~~v 365 (378)
|.|
T Consensus 73 l~V 75 (76)
T cd05867 73 VHV 75 (76)
T ss_pred EEE
Confidence 655
No 17
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=98.78 E-value=2.2e-08 Score=79.40 Aligned_cols=76 Identities=21% Similarity=0.357 Sum_probs=58.4
Q ss_pred ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCC---
Q psy10772 279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGN--- 355 (378)
Q Consensus 279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~--- 355 (378)
.+.+.+..|+++.|.|...+.+. |.+.|+.++.+ +. .+.++....+-|.|.+++..|+|.|.|.+.|
T Consensus 6 p~~~~~~~G~~~~l~C~~~g~p~---p~v~W~k~g~~-----~~--~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G 75 (85)
T cd05728 6 ISDTEADIGSSLRWECKASGNPR---PAYRWLKNGQP-----LA--SENRIEVEAGDLRITKLSLSDSGMYQCVAENKHG 75 (85)
T ss_pred CCccEEcCCCcEEEEEEeeEeCC---CEEEEEECCEE-----CC--CCCeEEEeCCEEEEeeCCHHHCEEEEEEEECCCC
Confidence 35577889999999999886654 68999988754 42 4455666677799999999999999999998
Q ss_pred eeeEEEeee
Q psy10772 356 TVLCTHNLT 364 (378)
Q Consensus 356 ~~l~~~~~~ 364 (378)
...++-.|+
T Consensus 76 ~~~~~~~l~ 84 (85)
T cd05728 76 TIYASAELA 84 (85)
T ss_pred eEEEEEEEE
Confidence 444444444
No 18
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=98.77 E-value=2.6e-08 Score=76.27 Aligned_cols=67 Identities=18% Similarity=0.407 Sum_probs=49.0
Q ss_pred eeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceE-eecCceEEeeecCCCCeEEEEEeCC---eeeEEEeee
Q psy10772 289 SVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIR-TVDGGLVIMAVEELDAGKYDCWLGN---TVLCTHNLT 364 (378)
Q Consensus 289 s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~-~~~~GLlI~~v~~~DsG~Y~C~~~~---~~l~~~~~~ 364 (378)
++.|+|...+.|. |.|+|+.++.+ +. +++++. ..+..|.|.+++.+|+|.|.|.+.| ...++-.|.
T Consensus 1 ~v~l~C~~~G~P~---p~v~W~k~g~~-----~~--~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~ 70 (71)
T cd05723 1 DVIFECEVTGKPT---PTVKWVKNGDM-----VI--PSDYFKIVKEHNLQVLGLVKSDEGFYQCIAENDVGNVQASAQLI 70 (71)
T ss_pred CEEEEEEEEEeCC---CEEEEEECCeE-----CC--CCCCEEEEecCCEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEE
Confidence 4789999976544 78999988753 32 333333 3456799999999999999999998 555555554
Q ss_pred e
Q psy10772 365 V 365 (378)
Q Consensus 365 v 365 (378)
|
T Consensus 71 V 71 (71)
T cd05723 71 I 71 (71)
T ss_pred C
Confidence 3
No 19
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=98.76 E-value=1.9e-08 Score=78.37 Aligned_cols=67 Identities=25% Similarity=0.427 Sum_probs=48.5
Q ss_pred eeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEe--ecCc---eEEeeecCCCCeEEEEEeCC---eeeEEE
Q psy10772 290 VHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRT--VDGG---LVIMAVEELDAGKYDCWLGN---TVLCTH 361 (378)
Q Consensus 290 ~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~--~~~G---LlI~~v~~~DsG~Y~C~~~~---~~l~~~ 361 (378)
+.|+|.+.+.|. |.|+|++++.. |.. .++++.. .+.| |.|.+++.+|+|.|.|.+.| ...|+-
T Consensus 1 v~l~C~v~G~P~---P~i~W~k~~~~-----i~~-~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a 71 (75)
T cd05892 1 VKLECQISAIPP---PKIFWKRNNEM-----VQY-NTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHA 71 (75)
T ss_pred CEEEEEEEecCC---CeEEEEECCEE-----CcC-CCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEE
Confidence 468999876644 79999998754 431 2234333 2333 99999999999999999998 666666
Q ss_pred eeee
Q psy10772 362 NLTV 365 (378)
Q Consensus 362 ~~~v 365 (378)
.|.|
T Consensus 72 ~L~V 75 (75)
T cd05892 72 RLDV 75 (75)
T ss_pred EEeC
Confidence 6654
No 20
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=98.76 E-value=3.3e-08 Score=81.56 Aligned_cols=77 Identities=22% Similarity=0.309 Sum_probs=57.2
Q ss_pred ceeEEEEeCCeeeeeeeecc-CCCCCCCCeEEEEecccCceeeEeeccCcc-eEee--------cCceEEeeecCCCCeE
Q psy10772 279 RLKQTVTWGQSVHLSCFVKL-PASMANQPMSWYHYSKDKGRYQIKFRSDKF-IRTV--------DGGLVIMAVEELDAGK 348 (378)
Q Consensus 279 ~k~~~~~~G~s~~L~C~~r~-~~~La~~~v~W~~~~~~~~~~~l~~~~~~~-~~~~--------~~GLlI~~v~~~DsG~ 348 (378)
...+.+..|+++.|.|.+.+ +|. |.++|+.++.+ |. .+.. +... ..-|.|.+|..+|+|.
T Consensus 10 ~~~~~v~~G~~v~L~c~v~g~~P~---p~v~W~Kdg~~-----i~--~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~ 79 (101)
T cd04975 10 NTTIFVNLGENLNLVVEVEAYPPP---PHINWTYDNRT-----LT--NKLTEIVTSENESEYRYVSELKLVRLKESEAGT 79 (101)
T ss_pred CceEEEECCCCEEEEEEEEecCCC---CccEEEeCCee-----CC--CCcceeEEEeccCcceEEEEEEEeecCHhhCee
Confidence 45678899999999999987 655 68999998765 32 1222 2221 2449999999999999
Q ss_pred EEEEeCC---eeeEEEeeee
Q psy10772 349 YDCWLGN---TVLCTHNLTV 365 (378)
Q Consensus 349 Y~C~~~~---~~l~~~~~~v 365 (378)
|.|.+.| ..-+.+.|.|
T Consensus 80 Ytc~A~N~~G~~~~t~~L~V 99 (101)
T cd04975 80 YTFLASNSDASKSLTFELYV 99 (101)
T ss_pred EEEEEECCCccEEEEEEEEE
Confidence 9999997 5555666665
No 21
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=98.75 E-value=3.6e-08 Score=78.34 Aligned_cols=77 Identities=22% Similarity=0.275 Sum_probs=55.9
Q ss_pred ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCC---
Q psy10772 279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGN--- 355 (378)
Q Consensus 279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~--- 355 (378)
.+.+.+.+|+++.|+|...+.+. |.|+|++++.. +. ........+.-|.|.+|+.+|+|.|.|.+.|
T Consensus 8 p~~~~~~~g~~v~l~C~~~g~P~---p~v~W~k~~~~-----~~--~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G 77 (88)
T cd04968 8 PKDTYALKGQNVTLECFALGNPV---PQIKWRKVDGS-----MP--SSAEISMSGAVLKIPNIQFEDEGTYECEAENIKG 77 (88)
T ss_pred CCceEEeCCCcEEEEEEeeEeCC---CEEEEEECCCc-----CC--CccEEEEeCCEEEECCCCcccCEEEEEEEEECCC
Confidence 35567889999999999876544 68999987653 21 2222233455689999999999999999987
Q ss_pred eeeEEEeeee
Q psy10772 356 TVLCTHNLTV 365 (378)
Q Consensus 356 ~~l~~~~~~v 365 (378)
...++-.|+|
T Consensus 78 ~~~~~~~l~V 87 (88)
T cd04968 78 KDTHQGRIYV 87 (88)
T ss_pred cEEEEEEEEE
Confidence 4555555554
No 22
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=98.74 E-value=4.3e-08 Score=77.38 Aligned_cols=77 Identities=32% Similarity=0.482 Sum_probs=58.8
Q ss_pred ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCc----eEEeeecCCCCeEEEEEeC
Q psy10772 279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGG----LVIMAVEELDAGKYDCWLG 354 (378)
Q Consensus 279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~G----LlI~~v~~~DsG~Y~C~~~ 354 (378)
.+.+.+.+|+++.|.|...+.+. |.+.|+.++.+ |. .++++.....+ |.|.+++..|+|.|.|.+.
T Consensus 7 ~~~~~v~~G~~~~l~c~~~~~p~---~~v~W~~~~~~-----l~--~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~ 76 (90)
T PF07679_consen 7 PKDVTVKEGESVTLECEVSGNPP---PTVTWYKNGRP-----LT--SSQRYQIESDGGSSSLTIKNVTREDAGTYTCVAS 76 (90)
T ss_dssp SSEEEEETTSEEEEEEEEEESSS---SEEEEEETTEE-----EE--SSSSEEEEEETTEEEEEESSESGGGSEEEEEEEE
T ss_pred cCCEEEeCCCEEEEEEEEEeCCC---Ccccccccccc-----ee--eeeeeeeecccceeEEccCCCChhhCEEEEEEEE
Confidence 46788999999999999976544 58999998654 43 34444443333 9999999999999999999
Q ss_pred C---eeeEEEeeee
Q psy10772 355 N---TVLCTHNLTV 365 (378)
Q Consensus 355 ~---~~l~~~~~~v 365 (378)
+ ...++..|+|
T Consensus 77 n~~g~~~~~~~l~V 90 (90)
T PF07679_consen 77 NSSGEATASVNLTV 90 (90)
T ss_dssp ETTEEEEEEEEEEE
T ss_pred ECCCEEEEEEEEEC
Confidence 8 5666666655
No 23
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=98.73 E-value=3.9e-08 Score=79.34 Aligned_cols=74 Identities=20% Similarity=0.207 Sum_probs=53.9
Q ss_pred eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeec--CceEEeeecCCCCeEEEEEeCCe-
Q psy10772 280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVD--GGLVIMAVEELDAGKYDCWLGNT- 356 (378)
Q Consensus 280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~--~GLlI~~v~~~DsG~Y~C~~~~~- 356 (378)
+.+.+.+|+++.|.|...+. .|.|.|+.++.. +. ++++.... .-|.|.+|+.+|+|.|.|.+.|.
T Consensus 11 ~~~~v~~g~~v~l~C~a~g~----~p~i~W~kng~~-----l~---~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~ 78 (91)
T cd05740 11 GNQPPEDNQPVTLTCEAEGQ----ATYIWWVNNGSL-----LV---PPRLQLSNDNRTLTFNNVTRSDTGHYQCEASNEV 78 (91)
T ss_pred CccccccCCcEEEEEEeCCC----CCEEEEEECCEE-----CC---CCCEEEeCCCCEEEECcCChhhCEEEEEEEEcCC
Confidence 56788899999999998765 368999988754 32 22333332 34999999999999999999882
Q ss_pred ---eeEEEeeee
Q psy10772 357 ---VLCTHNLTV 365 (378)
Q Consensus 357 ---~l~~~~~~v 365 (378)
.-..+.|+|
T Consensus 79 G~~~S~~~~L~V 90 (91)
T cd05740 79 SNMTSDPYILNV 90 (91)
T ss_pred CCEEeeeEEEEe
Confidence 223555555
No 24
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=98.72 E-value=4.8e-08 Score=78.43 Aligned_cols=67 Identities=24% Similarity=0.308 Sum_probs=51.2
Q ss_pred ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeec----CceEEeeecCCCCeEEEEEeC
Q psy10772 279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVD----GGLVIMAVEELDAGKYDCWLG 354 (378)
Q Consensus 279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~----~GLlI~~v~~~DsG~Y~C~~~ 354 (378)
.+.+.+.+|+++.|+|...+.+. |.+.|++++.. |. .++++.+.. .-|.|.+++.+|+|.|.|.+.
T Consensus 10 p~~~~~~~G~~~~L~C~~~g~P~---p~v~W~k~g~~-----l~--~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~ 79 (92)
T cd05747 10 PRSLTVSEGESARFSCDVDGEPA---PTVTWMREGQI-----IV--SSQRHQITSTEYKSTFEISKVQMSDEGNYTVVVE 79 (92)
T ss_pred CccEEEeCCCcEEEEEEEeecCC---CEEEEEECCEE-----CC--CCCcEEEEEcCCeeEEEECCCCcccCEeEEEEEE
Confidence 45688999999999999876554 68999988653 32 333433332 248999999999999999999
Q ss_pred C
Q psy10772 355 N 355 (378)
Q Consensus 355 ~ 355 (378)
|
T Consensus 80 N 80 (92)
T cd05747 80 N 80 (92)
T ss_pred c
Confidence 8
No 25
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=98.72 E-value=5.4e-08 Score=76.36 Aligned_cols=68 Identities=24% Similarity=0.440 Sum_probs=49.9
Q ss_pred ceeEEEEeCCeeeeeeee-ccCCCCCCCCeEEEEecccCceeeEeeccCcceEe-ecCceEEeeecCCCCeEEEEEeCC
Q psy10772 279 RLKQTVTWGQSVHLSCFV-KLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRT-VDGGLVIMAVEELDAGKYDCWLGN 355 (378)
Q Consensus 279 ~k~~~~~~G~s~~L~C~~-r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~-~~~GLlI~~v~~~DsG~Y~C~~~~ 355 (378)
.+.+.+.+|+++.|.|.+ .+.+ .|.+.|++++.+ +.. .+.++.. .+.-|.|.+++.+|+|.|.|.+.|
T Consensus 3 p~~~~~~~G~~v~l~C~~~~g~p---~p~i~W~k~g~~-----~~~-~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N 72 (86)
T cd05724 3 PSDTQVAVGEMAVLECSPPRGHP---EPTVSWRKDGQP-----LNL-DNERVRIVDDGNLLIAEARKSDEGTYKCVATN 72 (86)
T ss_pred CccEEEeCCCCEEEEEECCCCCC---CCEEEEEECCEE-----CCC-CCCCEEEccCCEEEEeECCcccCEEEEEEEEe
Confidence 356788899999999986 4433 368999998754 321 1233333 345699999999999999999998
No 26
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=98.71 E-value=6.5e-08 Score=78.42 Aligned_cols=68 Identities=24% Similarity=0.395 Sum_probs=52.2
Q ss_pred cceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCc----eEEeeecCCCCeEEEEEe
Q psy10772 278 GRLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGG----LVIMAVEELDAGKYDCWL 353 (378)
Q Consensus 278 ~~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~G----LlI~~v~~~DsG~Y~C~~ 353 (378)
..+.+.+..|+++.|.|...+.|. +++|+..+.. .+. .+.++....+| |.|.++..+|+|.|.|.+
T Consensus 6 ~~~~~~v~~G~~v~l~C~~~G~P~----~v~W~k~~g~----~~~--~~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A 75 (92)
T cd05866 6 SLSKVELSVGESKFFTCTAIGEPE----SIDWYNPQGE----KIV--SSQRVVVQKEGVRSRLTIYNANIEDAGIYRCQA 75 (92)
T ss_pred EecceEEcCCCeEEEEEEEEEeCC----eEEEEeCCCe----Eec--CCCCEEEEeCCCeeEEEEecCChHHCEEEEEEE
Confidence 456778999999999999887653 6999864321 243 44555555555 999999999999999999
Q ss_pred CC
Q psy10772 354 GN 355 (378)
Q Consensus 354 ~~ 355 (378)
.|
T Consensus 76 ~N 77 (92)
T cd05866 76 TD 77 (92)
T ss_pred Ec
Confidence 98
No 27
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=98.70 E-value=4.6e-08 Score=76.83 Aligned_cols=76 Identities=22% Similarity=0.376 Sum_probs=55.4
Q ss_pred eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcc---eEe--ecCceEEeeecCCCCeEEEEEeC
Q psy10772 280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKF---IRT--VDGGLVIMAVEELDAGKYDCWLG 354 (378)
Q Consensus 280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~---~~~--~~~GLlI~~v~~~DsG~Y~C~~~ 354 (378)
|.+.+.+|+++.|.|...+.+. |.++|+.++.+ |. .+.+ +.. ...-|+|.+++.+|+|.|.|.+.
T Consensus 2 ~~~~v~~G~~~~L~C~~~g~P~---p~i~W~k~g~~-----l~--~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~ 71 (85)
T cd05857 2 KLHAVPAANTVKFRCPAAGNPT---PTMRWLKNGKE-----FK--QEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVE 71 (85)
T ss_pred ccEEcCCCCEEEEEEEcCCCCC---CEEEEEECCEE-----CC--CCCceeeeEEeCCceEEEEccCCcccCEEEEEEEE
Confidence 4567888999999999876543 68999998754 32 1111 111 12248899999999999999999
Q ss_pred C---eeeEEEeeee
Q psy10772 355 N---TVLCTHNLTV 365 (378)
Q Consensus 355 ~---~~l~~~~~~v 365 (378)
| ..-+++.|+|
T Consensus 72 N~~G~~~~~~~l~v 85 (85)
T cd05857 72 NEYGSINHTYHLDV 85 (85)
T ss_pred eCCCEEEEEEEEEC
Confidence 8 6777777765
No 28
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=98.66 E-value=6.5e-08 Score=75.01 Aligned_cols=67 Identities=25% Similarity=0.372 Sum_probs=47.9
Q ss_pred eeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEee--cC---ceEEeeecCCCCeEEEEEeCC---eeeEEE
Q psy10772 290 VHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTV--DG---GLVIMAVEELDAGKYDCWLGN---TVLCTH 361 (378)
Q Consensus 290 ~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~--~~---GLlI~~v~~~DsG~Y~C~~~~---~~l~~~ 361 (378)
+.|+|.+.+.|. |.|+|++++.. |.. .++++.+. +. -|.|.+++.+|+|.|.|.+.| ...++.
T Consensus 1 v~L~C~v~G~P~---P~v~W~k~~~~-----i~~-~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~ 71 (75)
T cd05744 1 VRLECRVSAIPP---PQIFWKKNNEM-----LTY-NTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNA 71 (75)
T ss_pred CEEEEEEeecCC---CeEEEEECCEE-----CCC-CCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEE
Confidence 469999876655 78999998754 321 22343332 22 299999999999999999988 666666
Q ss_pred eeee
Q psy10772 362 NLTV 365 (378)
Q Consensus 362 ~~~v 365 (378)
.|+|
T Consensus 72 ~l~v 75 (75)
T cd05744 72 RLDV 75 (75)
T ss_pred EEeC
Confidence 6654
No 29
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=98.64 E-value=7.4e-08 Score=74.59 Aligned_cols=76 Identities=21% Similarity=0.351 Sum_probs=52.0
Q ss_pred eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEe--ecCceEEeeecCCCCeEEEEEeCC--
Q psy10772 280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRT--VDGGLVIMAVEELDAGKYDCWLGN-- 355 (378)
Q Consensus 280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~--~~~GLlI~~v~~~DsG~Y~C~~~~-- 355 (378)
|.+....|+++.|.|...+.+. |.++|+.++.. +. .+..... ...-|.|.+++.+|+|.|.|.+.|
T Consensus 2 ~~~~~~~G~~v~L~C~~~g~p~---p~i~W~k~~~~-----~~--~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~ 71 (82)
T cd05856 2 RVIARPVGSSVRLKCVASGNPR---PDITWLKDNKP-----LT--PTEIGESRKKKWTLSLKNLKPEDSGKYTCHVSNRA 71 (82)
T ss_pred cceeccCCCeEEEEEEeeEeCC---CcEEEEECCcC-----Cc--CCccceecCceEEEEEccCChhhCEEEEEEEEcCC
Confidence 4455677999999999864433 68999988754 32 1111111 123488999999999999999987
Q ss_pred -eeeEEEeeee
Q psy10772 356 -TVLCTHNLTV 365 (378)
Q Consensus 356 -~~l~~~~~~v 365 (378)
..-+.+.|+|
T Consensus 72 G~~~~~~~v~v 82 (82)
T cd05856 72 GEINATYKVDV 82 (82)
T ss_pred ccEEEEEEEeC
Confidence 4555555543
No 30
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=98.64 E-value=8.5e-08 Score=76.75 Aligned_cols=74 Identities=24% Similarity=0.446 Sum_probs=54.9
Q ss_pred CeeeeeeeeccCCCCCCCCeEEEEecccCceeeEee-ccCcceEee----cC-ceEEeeecCCCCeEEEEEeCC---eee
Q psy10772 288 QSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF-RSDKFIRTV----DG-GLVIMAVEELDAGKYDCWLGN---TVL 358 (378)
Q Consensus 288 ~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~-~~~~~~~~~----~~-GLlI~~v~~~DsG~Y~C~~~~---~~l 358 (378)
+++.|.|.+...+.|+ +.+.|++|+.+ |.. ..+.++... +. -|+|++++..|+|.|.|.+.+ +.-
T Consensus 1 ~~~~l~C~v~~d~~l~-~~~~W~~dg~~-----i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~ 74 (85)
T cd05853 1 ESIVLPCQVSHDHSLD-IVFTWSFNGHL-----IDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLS 74 (85)
T ss_pred CcEEEEEEeccCCCCC-cEEEEEECCEE-----CcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceE
Confidence 4788999987656665 47999999865 543 233344441 33 499999999999999999998 667
Q ss_pred EEEeeeecc
Q psy10772 359 CTHNLTVDA 367 (378)
Q Consensus 359 ~~~~~~v~~ 367 (378)
++=.|+|..
T Consensus 75 a~a~L~V~~ 83 (85)
T cd05853 75 AAADLIVRG 83 (85)
T ss_pred EEEEEEEec
Confidence 777777764
No 31
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=98.64 E-value=1.6e-07 Score=76.35 Aligned_cols=76 Identities=18% Similarity=0.282 Sum_probs=52.9
Q ss_pred ceeEEEEeCCeeeeeeeeccCC--CCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCCe
Q psy10772 279 RLKQTVTWGQSVHLSCFVKLPA--SMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGNT 356 (378)
Q Consensus 279 ~k~~~~~~G~s~~L~C~~r~~~--~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~~ 356 (378)
.|...+.+|+.+.|.|...... .-+.+.|+|+.++.+.. +......|+...+.-|.|.+++.+|+|.|.|.+.|.
T Consensus 6 ~~~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~---~~~~~~~r~~~~~~~L~I~~~~~~DsG~Y~C~~~N~ 82 (94)
T cd05756 6 DKKSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTP---IPTEERSRMHQQKDLLWFLPAALEDSGLYTCVVRNS 82 (94)
T ss_pred eeEEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCc---ccccccceeeecCCeEEEccCCcccCeEEEEEEcCC
Confidence 4678899999999999875410 01235899999875410 110123344444455889999999999999999984
Q ss_pred e
Q psy10772 357 V 357 (378)
Q Consensus 357 ~ 357 (378)
.
T Consensus 83 ~ 83 (94)
T cd05756 83 T 83 (94)
T ss_pred C
Confidence 4
No 32
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=98.64 E-value=1.4e-07 Score=75.31 Aligned_cols=79 Identities=20% Similarity=0.291 Sum_probs=55.3
Q ss_pred CCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEe-eccCcceEeecC-ceEEeeecCCCCeEEEEEeCC---eeeEEE
Q psy10772 287 GQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIK-FRSDKFIRTVDG-GLVIMAVEELDAGKYDCWLGN---TVLCTH 361 (378)
Q Consensus 287 G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~-~~~~~~~~~~~~-GLlI~~v~~~DsG~Y~C~~~~---~~l~~~ 361 (378)
|+++.|.|...+.+. |.|.|+.++...-.+... .....++.+... -|.|.+|+.+|+|.|.|.+.| ...++.
T Consensus 1 G~~v~L~C~~~g~P~---p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~ 77 (90)
T cd05726 1 GRTVTFQCEATGNPQ---PAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQRSDVGYYICQTLNVAGSILTKA 77 (90)
T ss_pred CCEEEEEEECCccCC---CEEEEEeCCCcceeecccCCCCCCeEEECCCCeEEEeeCChhhCEEEEEEEEcCCCceEEEE
Confidence 788999999865543 689998875431000000 012345555433 488999999999999999998 788888
Q ss_pred eeeeccc
Q psy10772 362 NLTVDAH 368 (378)
Q Consensus 362 ~~~v~~~ 368 (378)
.|.|.+.
T Consensus 78 ~l~V~~~ 84 (90)
T cd05726 78 YLEVTDV 84 (90)
T ss_pred EEEEeec
Confidence 8988764
No 33
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=98.64 E-value=9.2e-08 Score=74.29 Aligned_cols=71 Identities=18% Similarity=0.310 Sum_probs=51.7
Q ss_pred CCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCc-ceEeecCceEEeeecCCCCeEEEEEeCC---eeeEEEe
Q psy10772 287 GQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDK-FIRTVDGGLVIMAVEELDAGKYDCWLGN---TVLCTHN 362 (378)
Q Consensus 287 G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~-~~~~~~~GLlI~~v~~~DsG~Y~C~~~~---~~l~~~~ 362 (378)
|+++.|.|...+.|. |.|+|+.++.+ |...+.. .....+..|.|.+++..|+|.|.|.+.| ...++-.
T Consensus 1 g~~~~l~C~a~G~P~---P~i~W~k~g~~-----i~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~ 72 (76)
T cd05868 1 GEDGTLICRANGNPK---PSISWLTNGVP-----IEIAPTDPSRKVDGDTIIFSKVQERSSAVYQCNASNEYGYLLANAF 72 (76)
T ss_pred CCCEEEEEEeeEeCC---CeEEEEECCEE-----ccccCCCceEEecCCEEEECCCCHhhCEEEEEEEEcCCCEEEEEEE
Confidence 678999999876644 79999998764 4321222 2233344688899999999999999998 6666666
Q ss_pred eee
Q psy10772 363 LTV 365 (378)
Q Consensus 363 ~~v 365 (378)
|.|
T Consensus 73 l~v 75 (76)
T cd05868 73 VNV 75 (76)
T ss_pred EEe
Confidence 655
No 34
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=98.63 E-value=1.3e-07 Score=76.00 Aligned_cols=79 Identities=25% Similarity=0.373 Sum_probs=57.4
Q ss_pred eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeec--CceEEeeecCCCCeEEEEEeCC--
Q psy10772 280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVD--GGLVIMAVEELDAGKYDCWLGN-- 355 (378)
Q Consensus 280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~--~GLlI~~v~~~DsG~Y~C~~~~-- 355 (378)
..+.+..|+++.|.|...+.+. |.|+|+.++.. +.. .+.++.... ..|.|.+++.+|+|.|.|.+.|
T Consensus 11 ~~~~~~~G~~v~L~C~~~g~P~---p~v~W~k~g~~-----~~~-~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~ 81 (95)
T cd05730 11 VNATANLGQSVTLACDADGFPE---PTMTWTKDGEP-----IES-GEEKYSFNEDGSEMTILDVDKLDEAEYTCIAENKA 81 (95)
T ss_pred cceEEeCCCCEEEEEeccEeCC---CEEEEEECCEE-----CcC-CCCEEEEeCCCCEEEECCCChhhCEEEEEEEEcCC
Confidence 3467888999999999876543 68999988653 321 112333222 3499999999999999999998
Q ss_pred -eeeEEEeeeecc
Q psy10772 356 -TVLCTHNLTVDA 367 (378)
Q Consensus 356 -~~l~~~~~~v~~ 367 (378)
..-++..|.|-+
T Consensus 82 G~~~~~~~L~V~~ 94 (95)
T cd05730 82 GEQEAEIHLKVFA 94 (95)
T ss_pred CeEEEEEEEEEEe
Confidence 667777777643
No 35
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=98.63 E-value=9.3e-08 Score=73.34 Aligned_cols=71 Identities=21% Similarity=0.309 Sum_probs=51.0
Q ss_pred CCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCc-ceEeecCceEEeeecCCCCeEEEEEeCC---eeeEEEe
Q psy10772 287 GQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDK-FIRTVDGGLVIMAVEELDAGKYDCWLGN---TVLCTHN 362 (378)
Q Consensus 287 G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~-~~~~~~~GLlI~~v~~~DsG~Y~C~~~~---~~l~~~~ 362 (378)
|+++.|.|...+.+. |.|+|++++.+ +...... +....+.-|.|.+++..|+|.|.|.+.| ...++-.
T Consensus 1 G~~~~l~C~~~g~P~---p~i~W~~~g~~-----~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~ 72 (76)
T cd04978 1 GETGRLDCEAEGIPQ---PTITWRLNGVP-----IEELPPDPRRRVDGGTLILSNVQPNDTAVYQCNASNVHGYLLANAF 72 (76)
T ss_pred CCeEEEEEEceeeCC---CEEEEEECCEE-----CCCCCCcceEEccCCEEEECCCChhhCEEEEEEEEccCCeEEEeEE
Confidence 788999999865443 68999988754 3211111 2333455699999999999999999998 6666666
Q ss_pred eee
Q psy10772 363 LTV 365 (378)
Q Consensus 363 ~~v 365 (378)
|.|
T Consensus 73 l~V 75 (76)
T cd04978 73 VHV 75 (76)
T ss_pred EEE
Confidence 655
No 36
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=98.62 E-value=7.8e-08 Score=78.75 Aligned_cols=70 Identities=26% Similarity=0.377 Sum_probs=54.1
Q ss_pred ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCc-ceEee-cCceEEeeecCCCCeEEEEEeCC
Q psy10772 279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDK-FIRTV-DGGLVIMAVEELDAGKYDCWLGN 355 (378)
Q Consensus 279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~-~~~~~-~~GLlI~~v~~~DsG~Y~C~~~~ 355 (378)
.+...+.+|+.+.|.|.+ |...+.+.+.|+.++.+ +.+..+. ++... ++.|.|.+|+.+|+|.|.|.+.|
T Consensus 10 ~~~~~v~eG~~~~L~C~p--P~g~P~p~~~W~k~~~~-----~~~~~d~r~~~~~~~G~L~fs~v~~~D~g~Y~C~A~n 81 (96)
T cd05727 10 RDEVKVKEGWGVVLFCDP--PPHYPDLSYRWLLNEFP-----NFIPEDGRRFVSQTNGNLYIAKVEASDRGNYSCFVSS 81 (96)
T ss_pred cCceeeeeCCcEEEeeCC--CCCCCCCEEEEEECCcc-----cccccCCCeEEeCCCCcEEEeecCHhhCceeEEEEEe
Confidence 445678999999999998 88888889999998754 2111233 44444 35599999999999999999986
No 37
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.61 E-value=2.4e-07 Score=71.81 Aligned_cols=74 Identities=24% Similarity=0.435 Sum_probs=50.3
Q ss_pred CCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCc---ceEeec-CceEEeeecCCCCeEEEEEeCC---eeeE
Q psy10772 287 GQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDK---FIRTVD-GGLVIMAVEELDAGKYDCWLGN---TVLC 359 (378)
Q Consensus 287 G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~---~~~~~~-~GLlI~~v~~~DsG~Y~C~~~~---~~l~ 359 (378)
|+++.|.|...+.+. |.|+|+.+.....+ +...++. ++.... .-|.|.+++.+|+|.|.|.+.| ...+
T Consensus 1 G~~v~l~C~~~g~P~---p~v~W~k~~~~~~~--~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~ 75 (81)
T cd05765 1 GETASFHCDVTGRPP---PEITWEKQVHGKEN--LIMRPNHVRGNVVVTNIGQLVIYNAQPQDAGLYTCTARNSGGLLRA 75 (81)
T ss_pred CCcEEEEeeccccCC---CcEEEEecCCCCcc--eeecCCcccCCEEEccccEEEEccCCcccCEEEEEEEecCCceEEE
Confidence 788999998865543 68999987432111 2211221 222333 3499999999999999999998 6666
Q ss_pred EEeeee
Q psy10772 360 THNLTV 365 (378)
Q Consensus 360 ~~~~~v 365 (378)
...|+|
T Consensus 76 ~~~l~v 81 (81)
T cd05765 76 NFPLSV 81 (81)
T ss_pred EEEEeC
Confidence 776665
No 38
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=98.60 E-value=1.7e-07 Score=75.51 Aligned_cols=76 Identities=24% Similarity=0.380 Sum_probs=51.8
Q ss_pred ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecC-----ceEEeeecCCCCeEEEEEe
Q psy10772 279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDG-----GLVIMAVEELDAGKYDCWL 353 (378)
Q Consensus 279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~-----GLlI~~v~~~DsG~Y~C~~ 353 (378)
.+...+..|+++.|.|...+.+ +.++|+..... .+. +..++..... -|.|.+++.+|+|.|.|.+
T Consensus 7 p~~~~v~~G~~~~l~C~~~G~p----~~i~W~~~~~~----~~~--~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A 76 (92)
T cd04977 7 PSQGEISVGESKFFLCQVIGEP----KDISWFSPNGE----KLV--TQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVA 76 (92)
T ss_pred cCcEEECCCCeEEEEEEeEeeC----CeEEEECCCCC----Eec--cCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEE
Confidence 4557788999999999987652 37999863221 132 2223222222 3999999999999999999
Q ss_pred CCe----eeEEEeee
Q psy10772 354 GNT----VLCTHNLT 364 (378)
Q Consensus 354 ~~~----~l~~~~~~ 364 (378)
.|. .-++..|+
T Consensus 77 ~N~~g~~~~~sv~l~ 91 (92)
T cd04977 77 TDAKGTESEATVNLK 91 (92)
T ss_pred EcCCCCcceeEEEEE
Confidence 983 34455544
No 39
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=98.60 E-value=8.5e-08 Score=77.68 Aligned_cols=62 Identities=26% Similarity=0.426 Sum_probs=47.8
Q ss_pred eCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeec-CCCCeEEEEEeCC
Q psy10772 286 WGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVE-ELDAGKYDCWLGN 355 (378)
Q Consensus 286 ~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~-~~DsG~Y~C~~~~ 355 (378)
+|+.+.|.|...+.+. |.|+|++++.+ |....+.++...+..|+|.++. ..|+|.|.|.+.|
T Consensus 18 ~g~~v~l~C~~~G~P~---P~i~W~k~g~~-----l~~~~~~~~~~~~g~L~i~~~~~~~D~G~Y~C~A~N 80 (94)
T cd05848 18 DEKKVILNCEARGNPV---PTYRWLRNGTE-----IDTESDYRYSLIDGNLIISNPSEVKDSGRYQCLATN 80 (94)
T ss_pred CCCEEEEEEEeeecCC---CEEEEEECCeE-----CccCCCceEEeeCCeEEEccCCccCcCEEEEEEEEc
Confidence 4789999999876654 78999988754 4322233455667789999985 6999999999998
No 40
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=98.60 E-value=1.3e-07 Score=76.21 Aligned_cols=69 Identities=23% Similarity=0.359 Sum_probs=50.0
Q ss_pred eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEe-ecCceEEeee-----cCCCCeEEEEEe
Q psy10772 280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRT-VDGGLVIMAV-----EELDAGKYDCWL 353 (378)
Q Consensus 280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~-~~~GLlI~~v-----~~~DsG~Y~C~~ 353 (378)
+.+.+.+|+++.|.|.+.+.+ .|.++|++++.. |....+.++.. .+++|+|.++ +..|+|.|.|.+
T Consensus 7 ~~~~~~~g~~v~l~C~v~g~P---~p~i~W~k~g~~-----l~~~~~~~~~~~~~~~l~i~~v~~~~~~~~D~G~Y~C~a 78 (95)
T cd05722 7 SDIVAVRGGPVVLNCSAEGEP---PPKIEWKKDGVL-----LNLVSDERRQQLPNGSLLITSVVHSKHNKPDEGFYQCVA 78 (95)
T ss_pred CCeEEcCCCCEEEeeecccCC---CCEEEEEECCeE-----CccccCcceEEccCCeEEEeeeeccCCCCCcCEEEEEEE
Confidence 456778899999999987654 368999998754 33112222333 3445888888 589999999999
Q ss_pred CCe
Q psy10772 354 GNT 356 (378)
Q Consensus 354 ~~~ 356 (378)
.|.
T Consensus 79 ~N~ 81 (95)
T cd05722 79 QND 81 (95)
T ss_pred ECC
Confidence 886
No 41
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=98.59 E-value=8.4e-08 Score=73.61 Aligned_cols=66 Identities=29% Similarity=0.362 Sum_probs=47.5
Q ss_pred eeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCC---eeeEEEeeee
Q psy10772 290 VHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGN---TVLCTHNLTV 365 (378)
Q Consensus 290 ~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~---~~l~~~~~~v 365 (378)
+.|.|...+.|. |.++|+.++.+ |. .+.++...+.-|.|.+++.+|+|.|.|.+.| ....+..++|
T Consensus 1 ~~l~c~v~g~P~---p~v~W~k~g~~-----l~--~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~ 69 (71)
T cd04976 1 VRLPVKVKAYPP---PEIQWYKNGKL-----IS--EKNRTKKSGHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTL 69 (71)
T ss_pred CEEEeEEEEeCC---CEEEEEECCEE-----CC--CCCEEEcCCCEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEE
Confidence 468999876654 68999998754 43 3344445556699999999999999999998 3344444443
No 42
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=98.58 E-value=2e-07 Score=74.63 Aligned_cols=75 Identities=20% Similarity=0.201 Sum_probs=54.8
Q ss_pred CCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeec--------CceEEeeecCCCCeEEEEEeCC---
Q psy10772 287 GQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVD--------GGLVIMAVEELDAGKYDCWLGN--- 355 (378)
Q Consensus 287 G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~--------~GLlI~~v~~~DsG~Y~C~~~~--- 355 (378)
|+.+.|.|...+.+ ++.++|+.++.. |.. ...++.+.. .-|.|.++..+|+|.|.|.+.|
T Consensus 1 g~~~~l~C~~~g~p---~~~i~W~k~~~~-----i~~-~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G 71 (88)
T cd05735 1 GQKKEMSCTAHGEK---PIIVRWEKEDRI-----INP-EMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYG 71 (88)
T ss_pred CCeEEEEEEEECCC---CCEEEEeeCCEE-----CCC-CCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCC
Confidence 78899999997653 368999987743 221 112222211 2388999999999999999998
Q ss_pred eeeEEEeeeeccccc
Q psy10772 356 TVLCTHNLTVDAHSN 370 (378)
Q Consensus 356 ~~l~~~~~~v~~~~c 370 (378)
..-+...|.|.+.+.
T Consensus 72 ~~~~~~~L~V~~~P~ 86 (88)
T cd05735 72 EDRGIIQLTVQEPPD 86 (88)
T ss_pred cceEEEEEEEeCCCC
Confidence 778999999987644
No 43
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=98.58 E-value=2.5e-07 Score=75.57 Aligned_cols=79 Identities=24% Similarity=0.416 Sum_probs=54.4
Q ss_pred ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEE-ecccCceeeEeeccCcceEee-c----CceEEeeecCCCCeEEEEE
Q psy10772 279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYH-YSKDKGRYQIKFRSDKFIRTV-D----GGLVIMAVEELDAGKYDCW 352 (378)
Q Consensus 279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~-~~~~~~~~~l~~~~~~~~~~~-~----~GLlI~~v~~~DsG~Y~C~ 352 (378)
.+...+..|+++.|.|.+.+.+. +|.++|+. ++.. |. ..+.++.+. . .-|.|.+++.+|+|.|.|.
T Consensus 7 p~~~~v~~G~~v~l~C~v~G~P~--~p~i~W~~~~g~~-----l~-~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~ 78 (96)
T cd05865 7 PSQGEISVGESKFFLCQVAGEAK--DKDISWFSPNGEK-----LT-PNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCV 78 (96)
T ss_pred CCccEECCCCeEEEEEEEeCCCC--CCEEEEECCCCcC-----cc-ccCCeEEEEeCCCCceEEEEeccChhhCEEEEEE
Confidence 34556888999999999876543 25899997 5543 32 112233322 1 2499999999999999999
Q ss_pred eCCe----eeEEEeeee
Q psy10772 353 LGNT----VLCTHNLTV 365 (378)
Q Consensus 353 ~~~~----~l~~~~~~v 365 (378)
+.|. ..++-+|.|
T Consensus 79 A~N~~~g~~~~s~~l~v 95 (96)
T cd05865 79 VSNEDEGESEATVNVKI 95 (96)
T ss_pred EEcCCCCcEEEEEEEEE
Confidence 9983 456666654
No 44
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=98.58 E-value=1.5e-07 Score=72.01 Aligned_cols=67 Identities=19% Similarity=0.306 Sum_probs=48.3
Q ss_pred eeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcc-eEeecCceEEeeecCCCCeEEEEEeCC---eeeEEEeeee
Q psy10772 290 VHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKF-IRTVDGGLVIMAVEELDAGKYDCWLGN---TVLCTHNLTV 365 (378)
Q Consensus 290 ~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~-~~~~~~GLlI~~v~~~DsG~Y~C~~~~---~~l~~~~~~v 365 (378)
+.|+|...+.|. |.|+|+.++.+ +. .+.. +...+.-|.|.+++.+|+|.|.|.+.| ..-.++.|+|
T Consensus 1 ~~L~C~~~G~P~---P~v~W~k~~~~-----~~--~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05876 1 LVLECIAEGLPT---PEVHWDRIDGP-----LS--PNRTKKLNNNKTLQLDNVLESDDGEYVCTAENSEGSARHHYTVTV 70 (71)
T ss_pred CEEEEEeeEecC---CeEEEEECCcC-----CC--CCceeEEcCCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEE
Confidence 368999876655 78999988754 32 2221 222345689999999999999999998 5666777766
Q ss_pred c
Q psy10772 366 D 366 (378)
Q Consensus 366 ~ 366 (378)
+
T Consensus 71 e 71 (71)
T cd05876 71 E 71 (71)
T ss_pred C
Confidence 3
No 45
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=98.58 E-value=1.1e-07 Score=77.01 Aligned_cols=61 Identities=30% Similarity=0.499 Sum_probs=46.1
Q ss_pred CCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeec-CCCCeEEEEEeCC
Q psy10772 287 GQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVE-ELDAGKYDCWLGN 355 (378)
Q Consensus 287 G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~-~~DsG~Y~C~~~~ 355 (378)
|+++.|.|..++.+. |.++|++|+.+ |....+.++...+..|+|.++. ..|+|.|.|.+.|
T Consensus 19 g~~v~l~C~a~g~P~---p~i~W~~~g~~-----l~~~~~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N 80 (94)
T cd05850 19 EEKVTLGCRARASPP---ATYRWKMNGTE-----IKFAPESRYTLVAGNLVINNPQKARDAGSYQCLAIN 80 (94)
T ss_pred CCeEEEEeEceeCCC---CEEEEEECCEE-----CccCCCceEEEECCeEEEccCCccCcCEEEEEEEEc
Confidence 578999999876544 68999998764 4322334555566679898866 5999999999997
No 46
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=98.58 E-value=1.1e-07 Score=73.98 Aligned_cols=59 Identities=24% Similarity=0.421 Sum_probs=43.4
Q ss_pred CCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeec----CceEEeeecCCCCeEEEEEeCC
Q psy10772 287 GQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVD----GGLVIMAVEELDAGKYDCWLGN 355 (378)
Q Consensus 287 G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~----~GLlI~~v~~~DsG~Y~C~~~~ 355 (378)
|+++.|.|...+.|. |.|+|++++.+ +. .+.++.... .-|.|.+++.+|+|.|.|.+.|
T Consensus 1 G~~v~l~C~~~g~P~---p~v~W~~~~~~-----~~--~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N 63 (78)
T cd05743 1 GETVEFTCVATGVPT---PIINWRLNWGH-----VP--DSARVSITSEGGYGTLTIRDVKESDQGAYTCEAIN 63 (78)
T ss_pred CCEEEEEEEEEEecC---CEEEEEECCeE-----CC--CCCCEEEEECCCEEEEEECCCChHHCEEEEEEEEe
Confidence 789999999976554 68999987643 21 223332221 2399999999999999999987
No 47
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=98.57 E-value=2.2e-07 Score=75.34 Aligned_cols=78 Identities=29% Similarity=0.325 Sum_probs=55.0
Q ss_pred eEEEEeCCeeeeeeeeccCCCC--CCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCC---
Q psy10772 281 KQTVTWGQSVHLSCFVKLPASM--ANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGN--- 355 (378)
Q Consensus 281 ~~~~~~G~s~~L~C~~r~~~~L--a~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~--- 355 (378)
.+.+..|.++.|.|........ +.|.|+|+.++.+ |. .+++......-|.|.+|+.+|+|.|.|.+.+
T Consensus 4 ~~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~-----i~--~~~~~~~~~~~L~I~~v~~~DsG~YtC~~~n~~~ 76 (92)
T cd05757 4 KQILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKL-----LE--GDRKRFVKGSKLLIQNVTEEDAGNYTCKLTFTHN 76 (92)
T ss_pred eEEEeeccCCEEECCChHHccCCCCCCcEEEeECCEE-----CC--CCccEEecCCEEEEeeCChhhCEEEEEEEEecCC
Confidence 4677889999999975322111 3568999998864 43 3333333566799999999999999999985
Q ss_pred ----eeeEEEeeee
Q psy10772 356 ----TVLCTHNLTV 365 (378)
Q Consensus 356 ----~~l~~~~~~v 365 (378)
..-..++|+|
T Consensus 77 ~~~~~~t~t~~l~v 90 (92)
T cd05757 77 GKQYNVTRTISLTV 90 (92)
T ss_pred CEEEEEEEEEEEEE
Confidence 3444555554
No 48
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=98.57 E-value=1.4e-07 Score=72.71 Aligned_cols=58 Identities=26% Similarity=0.462 Sum_probs=42.2
Q ss_pred eeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCc-eEEeeecCCCCeEEEEEeCC
Q psy10772 290 VHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGG-LVIMAVEELDAGKYDCWLGN 355 (378)
Q Consensus 290 ~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~G-LlI~~v~~~DsG~Y~C~~~~ 355 (378)
+.|.|.+.+.+. |.|+|+.++.+ +....+.++...+.| |+|.+++.+|+|.|.|.+.|
T Consensus 1 a~l~C~~~G~P~---p~v~W~k~~~~-----~~~~~~~~~~~~~~g~L~i~~~~~~D~G~Y~C~a~N 59 (74)
T cd05738 1 ATMLCAASGNPD---PEITWFKDFLP-----VDTTSNGRIKQLRSGALQIENSEESDQGKYECVATN 59 (74)
T ss_pred CEEEEEEeEecC---CEEEEEECCEE-----CccCCCCCEEEcCCcEEEECCCChhhCEEEEEEEEC
Confidence 468998876544 68999998653 321133455554444 78899999999999999997
No 49
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=98.56 E-value=3.3e-07 Score=74.46 Aligned_cols=80 Identities=21% Similarity=0.247 Sum_probs=54.3
Q ss_pred ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEee---ccCcceEeec----CceEEeeecCCCCeEEEE
Q psy10772 279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF---RSDKFIRTVD----GGLVIMAVEELDAGKYDC 351 (378)
Q Consensus 279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~---~~~~~~~~~~----~GLlI~~v~~~DsG~Y~C 351 (378)
.+.+.+.+|+++.|.|...+.+. |.|+|+.+.... .+.. ..+.|+.... .-|.|.+|+.+|+|.|.|
T Consensus 8 ~~~~~~~~G~~v~l~C~~~G~P~---p~i~W~k~~~g~---~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G~Y~C 81 (98)
T cd05870 8 LKNETTVENGAATLSCKAEGEPI---PEITWKRASDGH---TFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSGRYDC 81 (98)
T ss_pred eccEEEcCCCcEEEEEecccCCC---CeEEEEECCCCc---eeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCEEEEE
Confidence 46788999999999999865543 689998753221 1210 1223444322 349999999999999999
Q ss_pred EeCC---eeeEEEeee
Q psy10772 352 WLGN---TVLCTHNLT 364 (378)
Q Consensus 352 ~~~~---~~l~~~~~~ 364 (378)
.+.| ....+..|+
T Consensus 82 ~A~N~~G~~~~~~~l~ 97 (98)
T cd05870 82 EAASRIGGHQKSMYLD 97 (98)
T ss_pred EEeccCCcceeEEEEe
Confidence 9987 334444443
No 50
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=98.56 E-value=1.3e-07 Score=71.85 Aligned_cols=56 Identities=21% Similarity=0.434 Sum_probs=41.8
Q ss_pred eeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEee-cCceEEeeecCCCCeEEEEEeCC
Q psy10772 290 VHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTV-DGGLVIMAVEELDAGKYDCWLGN 355 (378)
Q Consensus 290 ~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~-~~GLlI~~v~~~DsG~Y~C~~~~ 355 (378)
+.|.|...+.+. |.++|+.++.+ |. .+.++... +.-|.|.+++.+|+|.|.|.+.|
T Consensus 1 v~L~C~~~g~P~---p~i~W~k~g~~-----~~--~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N 57 (69)
T cd05746 1 VQIPCSAQGDPE---PTITWNKDGVQ-----VT--ESGKFHISPEGYLAIRDVGVADQGRYECVARN 57 (69)
T ss_pred CEeEecceEeCC---CEEEEEECCEE-----CC--CCCCEEECCCCEEEECcCChhhCEEEEEEEEC
Confidence 468999876654 68999987643 32 33344443 44599999999999999999987
No 51
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=98.56 E-value=1.9e-07 Score=70.70 Aligned_cols=66 Identities=24% Similarity=0.321 Sum_probs=45.2
Q ss_pred eeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCC---eeeEEEeeee
Q psy10772 290 VHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGN---TVLCTHNLTV 365 (378)
Q Consensus 290 ~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~---~~l~~~~~~v 365 (378)
+.|.|...+.+. |.++|+.++.. +. .+......+..|.|.+++.+|+|.|.|.+.| ..-++-.|.|
T Consensus 1 v~l~C~~~g~P~---p~v~W~k~~~~-----~~--~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 69 (69)
T cd05725 1 VEFQCEVGGDPV---PTVLWRKEDGE-----LP--KGRAEILDDKSLKIRNVTAGDEGSYTCEAENMVGKIEASASLTV 69 (69)
T ss_pred CEEEEECccCCC---CEEEEEECCcc-----CC--CCcEEEeeCCEEEECcCChhHCEEEEEEEEcCCCcEEEEEEEEC
Confidence 468998865443 68999998543 31 2222223455699999999999999999998 4445555543
No 52
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=98.55 E-value=3.1e-07 Score=75.64 Aligned_cols=76 Identities=14% Similarity=0.163 Sum_probs=56.2
Q ss_pred eEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceE-e---------ecCceEEeeecCCCCeEEE
Q psy10772 281 KQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIR-T---------VDGGLVIMAVEELDAGKYD 350 (378)
Q Consensus 281 ~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~-~---------~~~GLlI~~v~~~DsG~Y~ 350 (378)
...+..|.++.|+|.+.+.|. |.++|+.++.+ |. .+.+.. . ...-|.|.+++.+|+|.|.
T Consensus 12 ~~~~~~~~~~~l~~~v~g~P~---P~v~W~kdg~~-----l~--~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Yt 81 (101)
T cd05859 12 LEFANLHEVKEFVVEVEAYPP---PQIRWLKDNRT-----LI--ENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYT 81 (101)
T ss_pred eEEEecCCcEEEEEEEEEeCC---CceEEEECCEE-----Cc--CCcceEEeccccccceeeccEEEEeeCCHHHCEEEE
Confidence 667888999999999987655 68999998865 32 222211 1 1235999999999999999
Q ss_pred EEeCC---eeeEEEeeeec
Q psy10772 351 CWLGN---TVLCTHNLTVD 366 (378)
Q Consensus 351 C~~~~---~~l~~~~~~v~ 366 (378)
|.+.| ..-+++.|.|.
T Consensus 82 c~A~N~~g~~~~t~~l~V~ 100 (101)
T cd05859 82 ALAQNEDAVKSYTFALQIQ 100 (101)
T ss_pred EEEEcCCceEEEEEEEEEE
Confidence 99998 44456666653
No 53
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=98.54 E-value=2.3e-07 Score=74.81 Aligned_cols=75 Identities=21% Similarity=0.318 Sum_probs=52.8
Q ss_pred ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceE-e-ec---CceEEeeecCCCCeEEEEEe
Q psy10772 279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIR-T-VD---GGLVIMAVEELDAGKYDCWL 353 (378)
Q Consensus 279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~-~-~~---~GLlI~~v~~~DsG~Y~C~~ 353 (378)
...+++.+|+++.|.|...+.+. |.+.|+.++.+ +. .+.++. . .. ..|.|.+++.+|+|.|.|.+
T Consensus 8 p~~v~v~eG~~v~L~C~v~g~P~---p~i~W~k~~~~-----~~--~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a 77 (92)
T cd05891 8 PDVVTIMEGKTLNLTCTVFGNPD---PEVIWFKNDQD-----IE--LSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINV 77 (92)
T ss_pred CCcEEEcCCCEEEEEEEEEEeCC---CeEEEEECCEE-----CC--CCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEE
Confidence 45788999999999998765443 68999998653 22 222221 1 11 25999999999999999999
Q ss_pred CC---eeeEEEee
Q psy10772 354 GN---TVLCTHNL 363 (378)
Q Consensus 354 ~~---~~l~~~~~ 363 (378)
.| ...++-.|
T Consensus 78 ~N~~G~~~~~~~v 90 (92)
T cd05891 78 KNKYGGETVDVTV 90 (92)
T ss_pred EeCCCceeeEEEE
Confidence 97 44444444
No 54
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=98.53 E-value=2.1e-07 Score=72.37 Aligned_cols=67 Identities=27% Similarity=0.404 Sum_probs=46.9
Q ss_pred eeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecC--c---eEEeeecCCCCeEEEEEeCC---eeeEEE
Q psy10772 290 VHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDG--G---LVIMAVEELDAGKYDCWLGN---TVLCTH 361 (378)
Q Consensus 290 ~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~--G---LlI~~v~~~DsG~Y~C~~~~---~~l~~~ 361 (378)
+.|+|.+.+.|. |.|+|+.++.+ |. ..++++..... | |.|.+++.+|+|.|.|.+.| +..++-
T Consensus 1 v~l~C~v~G~P~---P~v~W~k~~~~-----l~-~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a 71 (75)
T cd05893 1 VRLECRVSGVPH---PQIFWKKENES-----LT-HNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTA 71 (75)
T ss_pred CEEEEEEeEecC---CEEEEEECCEE-----CC-CCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEE
Confidence 469999887655 79999998654 32 12234444322 2 88999999999999999998 455554
Q ss_pred eeee
Q psy10772 362 NLTV 365 (378)
Q Consensus 362 ~~~v 365 (378)
.|.|
T Consensus 72 ~L~V 75 (75)
T cd05893 72 RLDV 75 (75)
T ss_pred EEeC
Confidence 4443
No 55
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=98.53 E-value=1.9e-07 Score=76.26 Aligned_cols=71 Identities=27% Similarity=0.310 Sum_probs=54.6
Q ss_pred ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCc-eEEeeecCCCCe-EEEEEeCCe
Q psy10772 279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGG-LVIMAVEELDAG-KYDCWLGNT 356 (378)
Q Consensus 279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~G-LlI~~v~~~DsG-~Y~C~~~~~ 356 (378)
.+.+.+.+|+.+.|+|.+ |...+.|.|.|+.+... -+. .+.|+..+..| |.|.+|+.+|+| .|.|.+.+.
T Consensus 10 ~~~v~V~eG~~~~L~C~p--P~g~P~P~i~W~~~~~~----~i~--~~~Ri~~~~~GnL~fs~v~~~D~g~~Y~C~a~~~ 81 (95)
T cd05845 10 IRPVEVEEGDSVVLPCNP--PKSAVPLRIYWMNSDLL----HIT--QDERVSMGQNGNLYFANVEEQDSHPDYICHAHFP 81 (95)
T ss_pred cceeEEecCCCEEEEecC--CCCCCCCEEEEECCCCc----ccc--ccccEEECCCceEEEEEEehhhCCCCeEEEEEcc
Confidence 466889999999999985 55666689999855432 132 46677776545 999999999999 899999974
Q ss_pred e
Q psy10772 357 V 357 (378)
Q Consensus 357 ~ 357 (378)
.
T Consensus 82 ~ 82 (95)
T cd05845 82 G 82 (95)
T ss_pred c
Confidence 4
No 56
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=98.53 E-value=3.1e-07 Score=70.39 Aligned_cols=67 Identities=28% Similarity=0.335 Sum_probs=46.9
Q ss_pred eeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEee----cCceEEeeecCCCCeEEEEEeCC---eeeEEE
Q psy10772 289 SVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTV----DGGLVIMAVEELDAGKYDCWLGN---TVLCTH 361 (378)
Q Consensus 289 s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~----~~GLlI~~v~~~DsG~Y~C~~~~---~~l~~~ 361 (378)
++.|.|...+.|. |.++|+.++.+ |. .+.++.+. ..-|.|.+++.+|+|.|.|.+.| ..-++.
T Consensus 1 ~~~l~c~~~G~P~---p~v~W~k~g~~-----l~--~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~ 70 (74)
T cd05748 1 SVRLEVPISGRPT---PTVTWSKDGKP-----LK--LSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATI 70 (74)
T ss_pred CEEEEeeEeeeCC---CeEEEEECCEE-----cC--CCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEE
Confidence 3679999876655 78999988754 32 23333222 22499999999999999999998 555555
Q ss_pred eeee
Q psy10772 362 NLTV 365 (378)
Q Consensus 362 ~~~v 365 (378)
.|.|
T Consensus 71 ~l~V 74 (74)
T cd05748 71 NVKV 74 (74)
T ss_pred EEEC
Confidence 5543
No 57
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.52 E-value=4.8e-07 Score=69.27 Aligned_cols=60 Identities=22% Similarity=0.365 Sum_probs=43.6
Q ss_pred CCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcce-EeecCceEEeeecCCCCeEEEEEeCC
Q psy10772 287 GQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFI-RTVDGGLVIMAVEELDAGKYDCWLGN 355 (378)
Q Consensus 287 G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~-~~~~~GLlI~~v~~~DsG~Y~C~~~~ 355 (378)
|+++.|+|.+.+.+. |.|+|+.+... .+. ...+. ...++-|.|.+++.+|+|.|.|.+.|
T Consensus 1 G~~~~l~C~~~g~P~---p~v~W~~~~~~----~~~--~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N 61 (74)
T cd05764 1 GQRATLRCKARGDPE---PAIHWISPDGK----LIS--NSSRTLVYDNGTLDILITTVKDTGSFTCIASN 61 (74)
T ss_pred CCeEEEEEEccCcCC---CEEEEEeCCCE----Eec--CCCeEEEecCCEEEEEECChhhCEEEEEEEEC
Confidence 788999999876544 68999874322 122 22332 23345699999999999999999998
No 58
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=98.52 E-value=5e-07 Score=72.52 Aligned_cols=69 Identities=23% Similarity=0.310 Sum_probs=49.6
Q ss_pred ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEee---ccCcceEee----cCceEEeeecCCCCeEEEE
Q psy10772 279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF---RSDKFIRTV----DGGLVIMAVEELDAGKYDC 351 (378)
Q Consensus 279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~---~~~~~~~~~----~~GLlI~~v~~~DsG~Y~C 351 (378)
.+...+.+|+++.|.|...+.+. |.|+|+.++.. +.. ..+.++.+. ...|.|.+|+.+|+|.|.|
T Consensus 8 ~~~~~~~~g~~v~l~C~~~g~p~---p~v~W~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C 79 (96)
T cd05732 8 LENQTAVELEQITLTCEAEGDPI---PEITWRRATRN-----FSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYDC 79 (96)
T ss_pred cCceeEecCCcEEEEEEEeEcCC---CcEEEEECCcc-----cCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeEE
Confidence 35678899999999999875543 68999987643 210 011222222 2359999999999999999
Q ss_pred EeCC
Q psy10772 352 WLGN 355 (378)
Q Consensus 352 ~~~~ 355 (378)
.+.|
T Consensus 80 ~a~N 83 (96)
T cd05732 80 EASN 83 (96)
T ss_pred EEEe
Confidence 9998
No 59
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=98.49 E-value=7e-07 Score=71.37 Aligned_cols=69 Identities=20% Similarity=0.355 Sum_probs=47.6
Q ss_pred ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEee---ccCcc-eEeecCceEEeee-----cCCCCeEE
Q psy10772 279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF---RSDKF-IRTVDGGLVIMAV-----EELDAGKY 349 (378)
Q Consensus 279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~---~~~~~-~~~~~~GLlI~~v-----~~~DsG~Y 349 (378)
.+.+.+.+|+++.|.|...+.+. |.++|++++.. +.. ....+ +...++++++..+ +.+|+|.|
T Consensus 8 p~~~~v~~G~~~~l~C~~~g~P~---p~i~W~k~g~~-----l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y 79 (100)
T cd07693 8 PSDLIVSKGDPATLNCKAEGRPT---PTIQWLKNGQP-----LETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVY 79 (100)
T ss_pred CceeEEcCCCeEEEEeeCCcCCC---CEEEEEECCEE-----CccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEE
Confidence 35678889999999999876544 68999998754 321 01122 2233444554444 68999999
Q ss_pred EEEeCC
Q psy10772 350 DCWLGN 355 (378)
Q Consensus 350 ~C~~~~ 355 (378)
.|.+.|
T Consensus 80 ~C~a~N 85 (100)
T cd07693 80 VCVAHN 85 (100)
T ss_pred EEEEEc
Confidence 999998
No 60
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=98.48 E-value=2.6e-07 Score=71.64 Aligned_cols=57 Identities=26% Similarity=0.187 Sum_probs=42.1
Q ss_pred eeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCC
Q psy10772 290 VHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGN 355 (378)
Q Consensus 290 ~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~ 355 (378)
+.|+|.+.+.|. |.++|+.++.+ |.. ...++...+..|.|.+++.+|+|.|.|.+.+
T Consensus 1 ~~l~c~v~g~P~---P~v~W~kdg~~-----l~~-~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~~ 57 (72)
T cd07702 1 YRLTPKVKAFPA---PEVIWLKDGLP-----AAE-KCSRYHVDGYSLVIKDVTEEDAGIYTILLGI 57 (72)
T ss_pred CeEEeeEEEcCC---CeEEEEECCEE-----CCC-CCcEEEeCCCEEEECcCCHHHCEEEEEEEEc
Confidence 368999875554 78999998754 431 1133444444699999999999999999987
No 61
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.47 E-value=6.3e-07 Score=68.95 Aligned_cols=69 Identities=20% Similarity=0.358 Sum_probs=45.6
Q ss_pred eeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEe--ecCceEEeeecCCCCeEEEEEeCC---eeeEEEeee
Q psy10772 290 VHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRT--VDGGLVIMAVEELDAGKYDCWLGN---TVLCTHNLT 364 (378)
Q Consensus 290 ~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~--~~~GLlI~~v~~~DsG~Y~C~~~~---~~l~~~~~~ 364 (378)
+.|.|...+.|. |.|+|+.++.+. +....+.++.. .+.-|.|.+++.+|+|.|.|.+.| ...++-.|+
T Consensus 1 a~l~C~~~G~P~---P~v~W~k~~~~~----~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~ 73 (75)
T cd05763 1 ARLECAATGHPT---PQIAWQKDGGTD----FPAARERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQNTAGSISANATLT 73 (75)
T ss_pred CEeEeecccccC---CEEEEEeCCCcc----CCcccccceEEecCCCEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEE
Confidence 368998765544 789999986531 11112223332 234588999999999999999988 455555555
Q ss_pred e
Q psy10772 365 V 365 (378)
Q Consensus 365 v 365 (378)
|
T Consensus 74 V 74 (75)
T cd05763 74 V 74 (75)
T ss_pred E
Confidence 5
No 62
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=98.45 E-value=5.3e-07 Score=71.15 Aligned_cols=74 Identities=22% Similarity=0.441 Sum_probs=51.1
Q ss_pred CeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeecc-Ccc---e-Ee-ecCceEEeeecCCCCeEEEEEeCC---eee
Q psy10772 288 QSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRS-DKF---I-RT-VDGGLVIMAVEELDAGKYDCWLGN---TVL 358 (378)
Q Consensus 288 ~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~-~~~---~-~~-~~~GLlI~~v~~~DsG~Y~C~~~~---~~l 358 (378)
+++.|.|...+.+... ..++|++++.+ |.... +.. . .. ...-|.|.+++..|+|.|.|.+.| ...
T Consensus 1 e~~~L~C~~~g~P~p~-i~~~W~~~g~~-----i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~ 74 (85)
T cd04970 1 ESITLQCHASHDPTLD-LTFTWSFNGVP-----IDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLS 74 (85)
T ss_pred CcEEEEEEEecCCCCC-eEEEEEECCeE-----eeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcEE
Confidence 4688999997655411 14689988754 43211 111 1 11 233499999999999999999998 678
Q ss_pred EEEeeeecc
Q psy10772 359 CTHNLTVDA 367 (378)
Q Consensus 359 ~~~~~~v~~ 367 (378)
++..|.|..
T Consensus 75 ~~~~l~V~~ 83 (85)
T cd04970 75 ASADLIVRG 83 (85)
T ss_pred EEEEEEEEC
Confidence 888888876
No 63
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=98.45 E-value=1e-06 Score=70.39 Aligned_cols=76 Identities=13% Similarity=0.101 Sum_probs=53.8
Q ss_pred eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcce--Eee--cCceEEeeecCCCCeEEEEEeCC
Q psy10772 280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFI--RTV--DGGLVIMAVEELDAGKYDCWLGN 355 (378)
Q Consensus 280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~--~~~--~~GLlI~~v~~~DsG~Y~C~~~~ 355 (378)
+.+.+..|+.+.|.|...+.|. |.|+|+.++.. +. .+... ... ..-|.|.++..+|.|.|.|.+.|
T Consensus 8 ~~~~v~~G~~v~l~C~~~G~P~---p~v~W~~~g~~-----~~--~~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N 77 (90)
T cd04972 8 NATVVYEGGTATIRCTAEGSPL---PKVEWIIAGLI-----VI--QTRTDTLETTVDIYNLQLSNITSETQTTVTCTAEN 77 (90)
T ss_pred cCEEEcCCCcEEEEEEEEEcCC---CeEEEEECCEE-----cc--CCccEEEEecCCEEEEEEecCCcccCEEEEEEEEC
Confidence 4455889999999999986554 79999998753 22 11111 111 12489999999999999999998
Q ss_pred ---eeeEEEeeee
Q psy10772 356 ---TVLCTHNLTV 365 (378)
Q Consensus 356 ---~~l~~~~~~v 365 (378)
+..++..|+|
T Consensus 78 ~~G~~~~~~~L~v 90 (90)
T cd04972 78 PVGQANVSVQVTV 90 (90)
T ss_pred CCCceeEEEEEeC
Confidence 4555555543
No 64
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=98.44 E-value=6.3e-07 Score=71.67 Aligned_cols=63 Identities=30% Similarity=0.525 Sum_probs=41.7
Q ss_pred CCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcc--eE--------eec---CceEEeeecCCCCeEEEEEe
Q psy10772 287 GQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKF--IR--------TVD---GGLVIMAVEELDAGKYDCWL 353 (378)
Q Consensus 287 G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~--~~--------~~~---~GLlI~~v~~~DsG~Y~C~~ 353 (378)
|+++.|.|...+.|. |.|+|+......+. ++. ++.+ .. ..+ .-|+|.+|+.+|+|.|.|.+
T Consensus 1 G~~v~L~C~~~g~P~---P~i~W~k~~~~~g~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A 74 (90)
T cd05858 1 GSTVEFVCKVYSDAQ---PHIQWLKHVEKNGS-KYG--PDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLA 74 (90)
T ss_pred CCeEEEEEEEecCCC---CEEEEEEecccCCc-EeC--CCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEE
Confidence 789999999875544 78999985422111 121 1110 11 111 23999999999999999999
Q ss_pred CC
Q psy10772 354 GN 355 (378)
Q Consensus 354 ~~ 355 (378)
.|
T Consensus 75 ~N 76 (90)
T cd05858 75 GN 76 (90)
T ss_pred Ee
Confidence 87
No 65
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=98.43 E-value=5.8e-07 Score=69.89 Aligned_cols=57 Identities=18% Similarity=0.326 Sum_probs=40.4
Q ss_pred eeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEee--cCceEEeeecCCCCeEEEEEeCC
Q psy10772 290 VHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTV--DGGLVIMAVEELDAGKYDCWLGN 355 (378)
Q Consensus 290 ~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~--~~GLlI~~v~~~DsG~Y~C~~~~ 355 (378)
+.|.|...+.|. |.|+|+.++.+ |.. ...++... +.-|.|.+++.+|+|.|.|.+.|
T Consensus 1 v~L~C~~~g~P~---p~v~W~k~g~~-----l~~-~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N 59 (77)
T cd05760 1 VTLRCHIDGHPR---PTYQWFRDGTP-----LSD-GQGNYSVSSKERTLTLRSAGPDDSGLYYCCAHN 59 (77)
T ss_pred CEEEEEeeecCC---CcEEEEECCEE-----CCC-CCccEEEeCCCCEEEEeeCCcccCEEEEEEEEe
Confidence 468998865543 68999988754 431 11222222 23499999999999999999998
No 66
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=98.42 E-value=1.4e-06 Score=70.59 Aligned_cols=76 Identities=22% Similarity=0.300 Sum_probs=50.9
Q ss_pred EEEEe-CCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEee---ccCcceEeec----CceEEeeecCCCCeEEEEEe
Q psy10772 282 QTVTW-GQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF---RSDKFIRTVD----GGLVIMAVEELDAGKYDCWL 353 (378)
Q Consensus 282 ~~~~~-G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~---~~~~~~~~~~----~GLlI~~v~~~DsG~Y~C~~ 353 (378)
..+.. |+++.|.|...+.+. |.|+|++++.. +.. ..+.++.... ..|.|.+|+.+|+|.|.|.+
T Consensus 11 ~~~~~~g~~v~l~C~~~G~P~---P~v~W~~~~~~-----~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A 82 (97)
T cd05869 11 QTAMELEEQITLTCEASGDPI---PSITWRTSTRN-----ISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYLCTA 82 (97)
T ss_pred ceEEEcCCCEEEEEEeeEeCC---CEEEEEECCcc-----ccCCccccCccEEEEcCccEEEEEEecCccCcCEEEEEEE
Confidence 34444 799999999986544 68999987643 210 0112333222 35999999999999999999
Q ss_pred CC---eeeEEEeeee
Q psy10772 354 GN---TVLCTHNLTV 365 (378)
Q Consensus 354 ~~---~~l~~~~~~v 365 (378)
.| ...++-.|+|
T Consensus 83 ~N~~G~~~~~~~l~v 97 (97)
T cd05869 83 SNTIGQDSQSMYLEV 97 (97)
T ss_pred ecCCCCeeEEEEEEC
Confidence 98 4444444443
No 67
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=98.41 E-value=8.6e-07 Score=67.73 Aligned_cols=57 Identities=16% Similarity=0.338 Sum_probs=42.1
Q ss_pred CCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCC
Q psy10772 287 GQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGN 355 (378)
Q Consensus 287 G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~ 355 (378)
|+++.|.|...+.|. |.|+|+.++.+ |. .+.++......|.|.++ .|+|.|.|.+.|
T Consensus 1 G~~v~L~C~a~G~P~---P~v~W~k~g~~-----l~--~~~~~~~~~~~L~i~~~--~d~G~Y~C~A~N 57 (69)
T cd05739 1 GGSVNLTCVAVGAPM---PYVKWMKGGEE-----LT--KEDEMPVGRNVLELTNI--YESANYTCVAIS 57 (69)
T ss_pred CCeEEEEEEeeecCC---CEEEEEECCEE-----CC--CccceecCccEEEEecc--ccCeeEEEEEEe
Confidence 688999999987655 78999988653 32 33333333445888887 489999999997
No 68
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=98.40 E-value=9.8e-07 Score=71.93 Aligned_cols=72 Identities=26% Similarity=0.379 Sum_probs=49.8
Q ss_pred ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEeccc---CceeeEeeccCcceEee-----cCceEEeeecCCCCeEEE
Q psy10772 279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKD---KGRYQIKFRSDKFIRTV-----DGGLVIMAVEELDAGKYD 350 (378)
Q Consensus 279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~---~~~~~l~~~~~~~~~~~-----~~GLlI~~v~~~DsG~Y~ 350 (378)
-+.+++.+|+++.|.|.....+. |.|.|+..+.. .+.+.+. .+.|+... +.-|.|.+|+.+|+|.|.
T Consensus 4 ~~~~tv~~G~tv~L~C~v~g~~~---~~v~W~k~~~~~~~~~~~~~~--~~~r~~~~~~~~~~~~L~I~nV~~~D~G~Yt 78 (95)
T cd05882 4 TQDETVAVGGTVTLKCGVKEHDN---SSLQWSNTAQQTLYFGEKRAL--RDNRIQLVKSTPTELIISISNVQLSDEGEYT 78 (95)
T ss_pred cccEEEecCCcEEEEEEEeCCCC---CeEEEeccCccEEEeCCeEEE--eCCeEEEEeCCCceEEEEECCCCcccCEEEE
Confidence 46789999999999999876543 68999765532 0111111 23343322 234999999999999999
Q ss_pred EEeCC
Q psy10772 351 CWLGN 355 (378)
Q Consensus 351 C~~~~ 355 (378)
|.+.-
T Consensus 79 C~~~t 83 (95)
T cd05882 79 CSIFT 83 (95)
T ss_pred EEEEe
Confidence 99875
No 69
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=98.40 E-value=4.4e-07 Score=69.77 Aligned_cols=54 Identities=24% Similarity=0.253 Sum_probs=40.7
Q ss_pred eeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCC
Q psy10772 291 HLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGN 355 (378)
Q Consensus 291 ~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~ 355 (378)
.|+|...+.|. |.++|+.|+.+ |. .+.+ ...+.-|.|.++..+|+|.|.|.+.|
T Consensus 2 ~~~c~v~G~P~---P~v~W~k~g~~-----l~--~~~~-~~~~~~L~I~~v~~~D~G~YtC~a~N 55 (70)
T cd05864 2 KIPVKYYGYPP---PEVKWYKNGQL-----IV--LNHT-FKRGVHLTIYEVTEKDAGNYTVVLTN 55 (70)
T ss_pred EEEeEEEEeCC---CEEEEEECCEE-----CC--CCCE-EccCCEEEECcCCHHHCEEEEEEEEE
Confidence 57898876554 78999998865 43 2222 22334599999999999999999987
No 70
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=98.39 E-value=7.5e-07 Score=71.27 Aligned_cols=64 Identities=27% Similarity=0.423 Sum_probs=46.6
Q ss_pred EeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecC-CCCeEEEEEeCCe
Q psy10772 285 TWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEE-LDAGKYDCWLGNT 356 (378)
Q Consensus 285 ~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~-~DsG~Y~C~~~~~ 356 (378)
..|+.+.|.|...+.+. |.++|++++.+ |......++...+..|+|.++.. .|+|.|.|.+.|.
T Consensus 17 ~~~~~~~l~C~~~g~p~---p~i~W~k~~~~-----l~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~ 81 (91)
T cd04967 17 SDEGKVSLNCRARGSPP---PTYRWLMNGTE-----IDDEPDSRYSLVGGNLVISNPSKAKDAGRYQCLASNI 81 (91)
T ss_pred CCCCEEEEEEeeeEcCC---CEEEEEECCEE-----CCCCCCCCEEEECCEEEEecCCccCCCEEEEEEEEcC
Confidence 34578999999865433 68999987653 42222345556677899998875 8999999999873
No 71
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=98.39 E-value=1e-06 Score=71.51 Aligned_cols=68 Identities=19% Similarity=0.297 Sum_probs=48.0
Q ss_pred eeEEEEeCCeeeeeeeeccCCCCCCC-CeEEEEecccCceeeEeeccCcceEeecC--------ceEEeeecCCC-CeEE
Q psy10772 280 LKQTVTWGQSVHLSCFVKLPASMANQ-PMSWYHYSKDKGRYQIKFRSDKFIRTVDG--------GLVIMAVEELD-AGKY 349 (378)
Q Consensus 280 k~~~~~~G~s~~L~C~~r~~~~La~~-~v~W~~~~~~~~~~~l~~~~~~~~~~~~~--------GLlI~~v~~~D-sG~Y 349 (378)
+.+.+..|+++.|.|.+.+.+. | .|+|+.++.. |....+.++.+... -|.|.+++.+| +|.|
T Consensus 9 ~~~~~~~G~~v~L~C~~~g~P~---P~~v~W~~~~~~-----i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y 80 (98)
T cd05758 9 ATQYAILGDKGRVECFIFSTPP---PDRIVWTWKENE-----LESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSY 80 (98)
T ss_pred CcEEEeCCCcEEEEEEEcccCC---CCEeEEEECCEE-----ccCCCCCCEEEEEecCCCceEEEEEECCccccccceeE
Confidence 4567889999999999976444 5 4999988753 32111223333222 39999999955 9999
Q ss_pred EEEeCC
Q psy10772 350 DCWLGN 355 (378)
Q Consensus 350 ~C~~~~ 355 (378)
.|.+.|
T Consensus 81 ~C~A~N 86 (98)
T cd05758 81 NCTAWN 86 (98)
T ss_pred EEEEEc
Confidence 999987
No 72
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=98.38 E-value=9.3e-07 Score=68.10 Aligned_cols=69 Identities=23% Similarity=0.315 Sum_probs=46.7
Q ss_pred eeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecC--ceEEeeecCCCCeEEEEEeCC---eeeEEEeee
Q psy10772 290 VHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDG--GLVIMAVEELDAGKYDCWLGN---TVLCTHNLT 364 (378)
Q Consensus 290 ~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~--GLlI~~v~~~DsG~Y~C~~~~---~~l~~~~~~ 364 (378)
+.|.|...+.+ +|.|.|+.++.. |......++..... .|.|.+++.+|+|.|.|.+.| ..-++-.|.
T Consensus 1 ~~L~C~v~g~P---~p~v~W~k~~~~-----l~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 72 (76)
T cd05736 1 ASLRCHAEGIP---LPRLTWLKNGMD-----ITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLF 72 (76)
T ss_pred CEeEeEeeecC---CCEEEEEECCEE-----CCCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEE
Confidence 46899987543 368999988653 32111223333333 499999999999999999997 445555565
Q ss_pred ec
Q psy10772 365 VD 366 (378)
Q Consensus 365 v~ 366 (378)
|.
T Consensus 73 V~ 74 (76)
T cd05736 73 VE 74 (76)
T ss_pred EE
Confidence 54
No 73
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=98.38 E-value=1.6e-06 Score=69.44 Aligned_cols=75 Identities=25% Similarity=0.341 Sum_probs=46.8
Q ss_pred CCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcc-----------eEeecCceEEeeecCCCCeEEEEEeCC
Q psy10772 287 GQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKF-----------IRTVDGGLVIMAVEELDAGKYDCWLGN 355 (378)
Q Consensus 287 G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~-----------~~~~~~GLlI~~v~~~DsG~Y~C~~~~ 355 (378)
|+++.|.|...+.|. |.|+|+......+. .+......+ ......-|.|.+|+..|+|.|.|.+.|
T Consensus 1 G~~v~l~C~v~g~P~---P~i~W~k~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N 76 (90)
T cd04974 1 GSDVEFHCKVYSDAQ---PHIQWLKHVEVNGS-KYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGN 76 (90)
T ss_pred CCcEEEEEEEeCCCC---CeEEEEEecccCCc-eeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeec
Confidence 688999999876554 78999875321111 011000000 011123489999999999999999998
Q ss_pred ---eeeEEEeeee
Q psy10772 356 ---TVLCTHNLTV 365 (378)
Q Consensus 356 ---~~l~~~~~~v 365 (378)
...++-.|+|
T Consensus 77 ~~G~~~~sa~L~V 89 (90)
T cd04974 77 SIGPSHHSAWLTV 89 (90)
T ss_pred ccCcccCCEEEEe
Confidence 4444545554
No 74
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=98.37 E-value=1.5e-06 Score=69.16 Aligned_cols=74 Identities=22% Similarity=0.385 Sum_probs=52.1
Q ss_pred CeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeec-cCcceEe-----ecCceEEeeecCCCCeEEEEEeCC---eee
Q psy10772 288 QSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFR-SDKFIRT-----VDGGLVIMAVEELDAGKYDCWLGN---TVL 358 (378)
Q Consensus 288 ~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~-~~~~~~~-----~~~GLlI~~v~~~DsG~Y~C~~~~---~~l 358 (378)
+.+.|.|...+.+.+. ..++|++++.+ |... .+.++.. ....|.|.+|+..|+|.|.|.+.| +..
T Consensus 1 ~~~~L~C~a~g~P~p~-~~v~W~~~g~~-----i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~ 74 (85)
T cd05854 1 ENLTLQCHASHDPTMD-LTFTWSLDDFP-----IDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSAS 74 (85)
T ss_pred CcEEEEEEEecCCCCC-eEEEEEECCeE-----ccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCEE
Confidence 3578999987665531 25899998754 3321 1222211 234699999999999999999998 777
Q ss_pred EEEeeeecc
Q psy10772 359 CTHNLTVDA 367 (378)
Q Consensus 359 ~~~~~~v~~ 367 (378)
++-.|.|..
T Consensus 75 ~~~~L~V~~ 83 (85)
T cd05854 75 ASATLVVRG 83 (85)
T ss_pred EEEEEEEEC
Confidence 888888865
No 75
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=98.36 E-value=9e-07 Score=69.93 Aligned_cols=55 Identities=22% Similarity=0.422 Sum_probs=39.7
Q ss_pred eeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEe-----------ecCceEEeeecCCCCeEEEEEeCC
Q psy10772 291 HLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRT-----------VDGGLVIMAVEELDAGKYDCWLGN 355 (378)
Q Consensus 291 ~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~-----------~~~GLlI~~v~~~DsG~Y~C~~~~ 355 (378)
+++|.+++.|. |.|+|+.++.+ |. +++++.. ...-|.|.+++.+|+|.|.|.|.|
T Consensus 2 ~i~~~v~G~P~---P~v~W~k~g~~-----i~--~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N 67 (81)
T cd04971 2 CIPFTVRGNPK---PTLTWYHNGAV-----LN--ESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASN 67 (81)
T ss_pred eEEEEeEeeCC---CcEEEEECCEE-----Cc--CCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEe
Confidence 57888876655 78999998764 43 2222211 111399999999999999999998
No 76
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=98.36 E-value=5.3e-07 Score=68.87 Aligned_cols=52 Identities=31% Similarity=0.362 Sum_probs=41.0
Q ss_pred eeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCC
Q psy10772 290 VHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGN 355 (378)
Q Consensus 290 ~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~ 355 (378)
+.|+|...+.|. |.++|+.++.+ |. .. .....|.|.++..+|+|.|.|.+.|
T Consensus 1 ~~l~c~v~g~P~---P~v~W~kdg~~-----l~--~~----~~~~~L~i~~v~~~D~G~YtC~a~N 52 (67)
T cd05863 1 VKLPVKVAAYPP---PEFQWYKDGKL-----IS--GK----HSQHSLQIKDVTEASAGTYTLVLWN 52 (67)
T ss_pred CEEEEEEEEeCC---CEEEEEECCEE-----Cc--cc----CCcCEEEECCCCHHHCEEEEEEEEE
Confidence 468999876655 78999998764 53 11 2345799999999999999999987
No 77
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=98.34 E-value=1.1e-06 Score=66.37 Aligned_cols=66 Identities=26% Similarity=0.440 Sum_probs=45.3
Q ss_pred eeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCc-ceEeecCceEEeeecCCCCeEEEEEeCC---eeeEEEeeee
Q psy10772 290 VHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDK-FIRTVDGGLVIMAVEELDAGKYDCWLGN---TVLCTHNLTV 365 (378)
Q Consensus 290 ~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~-~~~~~~~GLlI~~v~~~DsG~Y~C~~~~---~~l~~~~~~v 365 (378)
+.|+|...+.+. |.++|+.++.+ +. .+. ........|.|.+++..|+|.|.|.+.| ..-++..|.|
T Consensus 1 v~l~C~~~g~P~---p~v~W~k~~~~-----~~--~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05731 1 LLLECIAEGLPT---PEISWIKIGGE-----LP--ADRTKFENFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTV 70 (71)
T ss_pred CEEEEEeeEecC---CeEEEEECCeE-----CC--CCceeEecCCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence 468999876544 68999987643 21 111 1112234599999999999999999998 4455555555
No 78
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=98.31 E-value=3.5e-06 Score=69.84 Aligned_cols=86 Identities=26% Similarity=0.377 Sum_probs=58.1
Q ss_pred ceeEEEEeCCeeeeeeeec------cCC--CCCCCCeEEEEecccCceeeEeec-cCcceEeecCceEEeeecCCCCeEE
Q psy10772 279 RLKQTVTWGQSVHLSCFVK------LPA--SMANQPMSWYHYSKDKGRYQIKFR-SDKFIRTVDGGLVIMAVEELDAGKY 349 (378)
Q Consensus 279 ~k~~~~~~G~s~~L~C~~r------~~~--~La~~~v~W~~~~~~~~~~~l~~~-~~~~~~~~~~GLlI~~v~~~DsG~Y 349 (378)
.+...+.+|+.+.|.|..= ..+ .-+..+|+|+.++.+.. ...... .+.|+...+.-|.|.++..+|+|.|
T Consensus 7 ~~~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~-~~~~~~~~~~Ri~~~~~~Lwf~Pa~~eDSG~Y 85 (104)
T cd05896 7 LKKYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGE-EPIEIIFDGVRMSKEEDSIWFRPAELQDSGLY 85 (104)
T ss_pred eeeEEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCC-CCCcccccceeEEEeCCEEEEEeCChhhCeEE
Confidence 4678899999999999860 000 11122689999863311 011111 1247888888899999999999999
Q ss_pred EEEeCCeeeE---EEeeee
Q psy10772 350 DCWLGNTVLC---THNLTV 365 (378)
Q Consensus 350 ~C~~~~~~l~---~~~~~v 365 (378)
.|...|.+.| +.+|+|
T Consensus 86 ~C~~rN~t~C~~~~i~l~V 104 (104)
T cd05896 86 TCVLRNSTYCMKVSMSLTV 104 (104)
T ss_pred EEEECCCCcceEEEEEEEC
Confidence 9999998844 444443
No 79
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=98.29 E-value=2.1e-06 Score=67.35 Aligned_cols=62 Identities=26% Similarity=0.409 Sum_probs=47.3
Q ss_pred ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCCe
Q psy10772 279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGNT 356 (378)
Q Consensus 279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~~ 356 (378)
.....+.+|+++.|.|...+.+. .+.+.|++|+.. |. ....-|.|.++ .+|+|.|.|.+.+.
T Consensus 7 P~~~~v~~G~~V~L~C~~~~~p~--~~~~~W~kng~~-----l~--------~~~~~l~i~~~-~~dsG~Y~C~a~~~ 68 (78)
T cd05752 7 PPWTTIFQGEKVTLTCNGFNSPE--QNSTQWYHNGKL-----LE--------TTTNSYRIRAA-NNDSGEYRCQTQGS 68 (78)
T ss_pred CCCeEeeCCCCEEEEEeCCCCCC--CccEEEEECCEE-----ee--------ccCCeEEEeec-ccCCEEeEEECCCC
Confidence 34567889999999999876433 236899998753 42 12456899999 99999999999863
No 80
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=98.28 E-value=4.3e-06 Score=64.79 Aligned_cols=75 Identities=24% Similarity=0.376 Sum_probs=51.2
Q ss_pred eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEe-----ecCceEEeeecCCCCeEEEEEeC
Q psy10772 280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRT-----VDGGLVIMAVEELDAGKYDCWLG 354 (378)
Q Consensus 280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~-----~~~GLlI~~v~~~DsG~Y~C~~~ 354 (378)
|.+.+..|+++.|.|.....+. +.|.|+.++.+ +. .+..+.. ...-|.|.+++.+|+|.|.|.+.
T Consensus 2 ~~~~~~~G~~~~l~C~~~~~p~---~~v~W~k~~~~-----~~--~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~ 71 (85)
T cd05729 2 RLHAVPAGSTVRLKCPASGNPR---PTITWLKDGKP-----FK--KEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVE 71 (85)
T ss_pred ceeEecCCCcEEEEEEcCCCCC---CeEEEEECCEE-----Cc--ccCceeEEEccCcEEEEEEeECCcccCEEEEEEEE
Confidence 4566778999999999875533 57999987643 21 1111111 12248899999999999999998
Q ss_pred C---eeeEEEeee
Q psy10772 355 N---TVLCTHNLT 364 (378)
Q Consensus 355 ~---~~l~~~~~~ 364 (378)
| ..-.++.|.
T Consensus 72 n~~g~~~~~~~l~ 84 (85)
T cd05729 72 NKYGSINHTYKVD 84 (85)
T ss_pred ECCceEEEEEEEe
Confidence 6 445555554
No 81
>KOG3513|consensus
Probab=98.27 E-value=5.6e-06 Score=91.31 Aligned_cols=117 Identities=26% Similarity=0.362 Sum_probs=83.4
Q ss_pred EEEEEEeeeecCCCeEEEE---EEECCCeeEE---EEeceeeeeccCCCCCcccccccceeEEEEeCCeeeeeeeeccCC
Q psy10772 227 VVDVVQYEVFGTTSEYIVY---FAATTTLRTV---FVKVRLLQDVSNTSDSICESSVGRLKQTVTWGQSVHLSCFVKLPA 300 (378)
Q Consensus 227 aVd~v~~~~~~~~~~ytV~---flGT~~G~v~---~V~~~~lqd~~~~~~~~C~~~~~~k~~~~~~G~s~~L~C~~r~~~ 300 (378)
.+-.++-.| ++.|.+. ..|++.+.++ +..+.|+|.+ +...+..|+++.|+|...+
T Consensus 297 ~I~nv~~~D---~G~Y~C~AeN~~G~~~~~~~v~v~a~P~w~~~~--------------~d~~~~~gs~v~~eC~a~g-- 357 (1051)
T KOG3513|consen 297 KIPNVQYED---AGEYECIAENSRGSATHSGHVTVYAPPYWLQKP--------------QDTEADTGSNVTLECKASG-- 357 (1051)
T ss_pred EecccCcCC---CeEEEEEEecccccceeeEEEEEecCchhhccc--------------ceeEecCCCCeEEEEEecC--
Confidence 344444444 6889887 3454444433 2245666643 4566778999999999754
Q ss_pred CCCCCCeEEEEecccCceeeEee-ccCcceEeecCceEEeeecCCCCeEEEEEeCC---eeeEEEeeeeccc
Q psy10772 301 SMANQPMSWYHYSKDKGRYQIKF-RSDKFIRTVDGGLVIMAVEELDAGKYDCWLGN---TVLCTHNLTVDAH 368 (378)
Q Consensus 301 ~La~~~v~W~~~~~~~~~~~l~~-~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~---~~l~~~~~~v~~~ 368 (378)
-|.|+|+|+.|+.+ |.. ..++++.+..+-|.|.+|+.+|+|.|+|.|.| ..+++=.|.|.+.
T Consensus 358 -~P~p~v~WlkNg~p-----l~~~~r~~~~~i~~g~L~is~v~~~dsg~YQC~A~Nk~G~i~anA~L~V~a~ 423 (1051)
T KOG3513|consen 358 -KPNPTVKWLKNGEP-----LEPAERDPRYKIDDGTLIISNVQESDSGVYQCIAENKYGTIYANAELKVLAS 423 (1051)
T ss_pred -CCCCceEEeeCCee-----cCccCCCcceEEeCCEEEEEecccccCeEEEeeeecccceEeeeeEEEEEcc
Confidence 44589999999976 431 23344667777799999999999999999999 7778888888775
No 82
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=98.24 E-value=1.9e-06 Score=69.72 Aligned_cols=60 Identities=27% Similarity=0.453 Sum_probs=45.0
Q ss_pred CCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeec-CCCCeEEEEEeCC
Q psy10772 287 GQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVE-ELDAGKYDCWLGN 355 (378)
Q Consensus 287 G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~-~~DsG~Y~C~~~~ 355 (378)
|+.+.|.|...+.+. |.++|+.++.+ +.. .+.++...+..|+|.++. ..|+|.|.|.+.|
T Consensus 19 ~~~v~l~C~a~G~P~---P~i~W~k~~~~-----i~~-~~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N 79 (93)
T cd05849 19 EGKVSVNCRARANPF---PIYKWRKNNLD-----IDL-TNDRYSMVGGNLVINNPDKYKDAGRYVCIVSN 79 (93)
T ss_pred CCeEEEeCcCccCCC---CEEEEEECCEE-----ccC-CCCeEEEECCEEEECcCCcCCCCEEEEEEEEe
Confidence 458999999876544 78999987653 321 233555566678898885 6899999999998
No 83
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=98.21 E-value=2e-06 Score=63.56 Aligned_cols=57 Identities=26% Similarity=0.462 Sum_probs=39.2
Q ss_pred CCeeeeeeee-ccCCCCCCCCeEEEEecccCceeeEeeccCcceEee--cCc----eEEeeecCCCCeEEEEEe
Q psy10772 287 GQSVHLSCFV-KLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTV--DGG----LVIMAVEELDAGKYDCWL 353 (378)
Q Consensus 287 G~s~~L~C~~-r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~--~~G----LlI~~v~~~DsG~Y~C~~ 353 (378)
|+++.|.|.. ..++. +.+.|++++..... ....... ... |.|.+++..|+|.|.|.+
T Consensus 1 G~~v~L~C~~~~~~~~---~~~~W~~~~~~~~~-------~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 1 GSSVTLTCSVSSGPPP---TTVTWSKNGQSLPE-------GSTTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp TSEEEEEEEEEESSST---SEEEEEETTTTTSE-------EEEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred CCeEEEEeecCCCCCC---cEEEEEECCccccC-------cceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence 7899999999 32322 48999998765211 1111111 112 999999999999999985
No 84
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=98.20 E-value=3.8e-06 Score=60.11 Aligned_cols=60 Identities=27% Similarity=0.421 Sum_probs=42.4
Q ss_pred eCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCC
Q psy10772 286 WGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGN 355 (378)
Q Consensus 286 ~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~ 355 (378)
+|+++.|.|..... +.+.+.|++++.. +. ..........-|.|.+++..|+|.|.|.+.+
T Consensus 1 ~g~~~~l~C~~~~~---~~~~v~W~~~~~~-----~~--~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n 60 (63)
T smart00408 1 EGQSVTLTCPAEGD---PVPNITWLKDGKP-----LP--ESNRLSASGSTLTIKSVSLEDSGEYTCVAEN 60 (63)
T ss_pred CCceEEEEeeCccC---CCCeEEEEECCEE-----CC--CCCEEecCCcEEEEeeCCcccCEEEEEEEec
Confidence 48899999985322 3357999987643 22 1112233455699999999999999999875
No 85
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=98.18 E-value=3.6e-06 Score=65.46 Aligned_cols=63 Identities=25% Similarity=0.340 Sum_probs=40.5
Q ss_pred eeeeeeeccCCCCCCCCeEEEEecccCceeeE-eeccCcceEeec-CceEEeeecCCCCeEEEEEeCC
Q psy10772 290 VHLSCFVKLPASMANQPMSWYHYSKDKGRYQI-KFRSDKFIRTVD-GGLVIMAVEELDAGKYDCWLGN 355 (378)
Q Consensus 290 ~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l-~~~~~~~~~~~~-~GLlI~~v~~~DsG~Y~C~~~~ 355 (378)
+.|.|...+.|. |.|+|+.+......... ....+.++.... .-|+|.+++.+|+|.|.|.+.|
T Consensus 1 v~l~C~~~G~P~---P~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~I~~v~~~D~G~Y~C~a~N 65 (79)
T cd05734 1 VTLNCSAEGYPP---PTIVWKHSKGRGHPQHTHTCCLAGRIQLLSNGSLLIKHVLEEDSGYYLCKVSN 65 (79)
T ss_pred CEeEeeCeEeCC---CEEEEEECCCccccccccccccCCCEEEecCCeEEECcCCcccCEEEEEEEEe
Confidence 468998765544 68999986432110000 001233444333 4499999999999999999987
No 86
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=98.15 E-value=6.9e-06 Score=64.60 Aligned_cols=75 Identities=19% Similarity=0.298 Sum_probs=47.7
Q ss_pred CCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcce----EeecCceEEeeecCCCCeEEEEEeCC---eeeE
Q psy10772 287 GQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFI----RTVDGGLVIMAVEELDAGKYDCWLGN---TVLC 359 (378)
Q Consensus 287 G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~----~~~~~GLlI~~v~~~DsG~Y~C~~~~---~~l~ 359 (378)
|+++.|.|...+.++. .|.++|.+++...... ... ...+. .....-|.|.+++.+|+|.|.|.+.| +..+
T Consensus 1 Ge~~~L~C~~~g~~~~-~~~i~W~~~~~~~~~~-~~~-~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~ 77 (84)
T cd05742 1 GETLVLNCTVLTELNE-GVDFQWTYPGKKRGRG-KSM-VTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKE 77 (84)
T ss_pred CCeEEEEEEEEeCCCc-cEEEEEecCCcccCCc-eEe-ecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEE
Confidence 7889999999876432 2579999876542210 110 00010 11223599999999999999999997 3444
Q ss_pred EEeee
Q psy10772 360 THNLT 364 (378)
Q Consensus 360 ~~~~~ 364 (378)
+=+|.
T Consensus 78 s~~v~ 82 (84)
T cd05742 78 STKVN 82 (84)
T ss_pred EEEEE
Confidence 44443
No 87
>KOG4221|consensus
Probab=98.14 E-value=5.7e-06 Score=91.46 Aligned_cols=91 Identities=27% Similarity=0.421 Sum_probs=71.3
Q ss_pred cceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEee-cCceEEeeecCCCCeEEEEEeCC-
Q psy10772 278 GRLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTV-DGGLVIMAVEELDAGKYDCWLGN- 355 (378)
Q Consensus 278 ~~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~-~~GLlI~~v~~~DsG~Y~C~~~~- 355 (378)
......+.+|+++.|+|.++ ++++|.|+|+.|+.. |.+.+ .++.+. ...|+|.+++..|+|.|.|.+.|
T Consensus 243 ~p~~~~v~~g~~v~leCvvs---~~p~p~v~Wlrng~~-----i~~ds-~rivl~g~~slliS~a~~~dSg~YtC~Atn~ 313 (1381)
T KOG4221|consen 243 EPSNAVVVEGDDVVLECVVS---GVPKPSVKWLRNGEK-----ISVDS-YRIVLVGGSSLLISNATDDDSGKYTCRATNT 313 (1381)
T ss_pred CCCccccccCCcEEEEEEec---CCCCCceEEeeCCee-----eeecc-eEEEEecccceEEeccccccCceEEEEecCC
Confidence 35567889999999999986 456689999998754 54323 455444 45599999999999999999998
Q ss_pred --eeeEEEeeeecccccCCCCCCC
Q psy10772 356 --TVLCTHNLTVDAHSNVADAPTR 377 (378)
Q Consensus 356 --~~l~~~~~~v~~~~c~~~~~~~ 377 (378)
..=++=+|+|.+.+-..+.|+-
T Consensus 314 ~D~idasaev~V~a~P~~~~~p~~ 337 (1381)
T KOG4221|consen 314 NDSIDASAEVTVLAPPGFTKAPTT 337 (1381)
T ss_pred CcccccceEEEEEcCCCCCCCCcc
Confidence 4557778999998888777764
No 88
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=98.12 E-value=3.6e-06 Score=66.40 Aligned_cols=55 Identities=22% Similarity=0.348 Sum_probs=39.8
Q ss_pred eeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEe---------ecCceEEeeecCCCCeEEEEEeCC
Q psy10772 291 HLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRT---------VDGGLVIMAVEELDAGKYDCWLGN 355 (378)
Q Consensus 291 ~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~---------~~~GLlI~~v~~~DsG~Y~C~~~~ 355 (378)
.++|.+++.|. |+|+|++++.+ |. .++++.. ...-|.|.+++..|+|.|.|.|.|
T Consensus 2 ~i~~~v~G~P~---Pti~W~kng~~-----l~--~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N 65 (79)
T cd05855 2 CIPFTVKGNPK---PTLQWFHEGAI-----LN--ESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKN 65 (79)
T ss_pred eEEEEEeEeCC---CceEEEECCEE-----CC--CCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEc
Confidence 36788776655 79999999865 43 3333211 112389999999999999999998
No 89
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=98.10 E-value=1.2e-05 Score=65.41 Aligned_cols=72 Identities=25% Similarity=0.394 Sum_probs=47.8
Q ss_pred ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEeccc----CceeeEeeccCcceEee-----cCceEEeeecCCCCeEE
Q psy10772 279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKD----KGRYQIKFRSDKFIRTV-----DGGLVIMAVEELDAGKY 349 (378)
Q Consensus 279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~----~~~~~l~~~~~~~~~~~-----~~GLlI~~v~~~DsG~Y 349 (378)
.+.+.+.+|+++.|+|.....+ .+.|.|+..+.. .+...+ .++|+... +.-|.|.+++.+|+|.|
T Consensus 4 ~~~v~v~eG~~v~L~C~~~~~p---~~~v~W~~~~~~~l~~~~~~~~---~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y 77 (95)
T cd07701 4 TQNVTVVEGGTANLTCRVDQND---NTSLQWSNPAQQTLYFDDKKAL---RDNRIELVRASWHELSISISDVSLSDEGQY 77 (95)
T ss_pred cceEEEecCCcEEEEEEEecCC---ceEEEEeCCCCeEEEEcCcccc---cCCCEEEEECCCCcEEEEECcCCcccCEEE
Confidence 4678899999999999886443 368999732110 000001 23343321 12489999999999999
Q ss_pred EEEeCCe
Q psy10772 350 DCWLGNT 356 (378)
Q Consensus 350 ~C~~~~~ 356 (378)
.|.+...
T Consensus 78 ~C~~~t~ 84 (95)
T cd07701 78 TCSLFTM 84 (95)
T ss_pred EEEeEee
Confidence 9999863
No 90
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=98.10 E-value=9.1e-06 Score=76.61 Aligned_cols=67 Identities=21% Similarity=0.383 Sum_probs=48.5
Q ss_pred EEEEeCCeeeeeeeecc-CC-CCCCCCeEEEEecccCceeeEeeccCcceEeecCc--eEEeeecCCCCeEEEEEeCC
Q psy10772 282 QTVTWGQSVHLSCFVKL-PA-SMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGG--LVIMAVEELDAGKYDCWLGN 355 (378)
Q Consensus 282 ~~~~~G~s~~L~C~~r~-~~-~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~G--LlI~~v~~~DsG~Y~C~~~~ 355 (378)
..+.+|+++.|.|.... ++ ..+.|+++|+.++.+ |. .++++.....| |+|.+|+.+|+|.|.|.+.-
T Consensus 139 ~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~-----l~--~~~r~~~~~~~~~L~I~~V~~~DsG~YtC~a~~ 209 (227)
T PHA02826 139 YQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNI-----VL--YTDRIQLRNNNSTLVIKSATHDDSGIYTCNLRF 209 (227)
T ss_pred ceEecCCCEEEEeeCCCCccccCCCceEEEEECCEE-----CC--CCCCEEEeCCCCEEEECcCCHHhCEEEEEEEEE
Confidence 45677999999998642 11 224468999998864 43 34454443333 99999999999999999974
No 91
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=98.08 E-value=6.6e-06 Score=64.76 Aligned_cols=66 Identities=26% Similarity=0.323 Sum_probs=48.6
Q ss_pred ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCC
Q psy10772 279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGN 355 (378)
Q Consensus 279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~ 355 (378)
.+.+.+.+|+++.|.|...... +.+.+.|+.++.+ +. . +......-|.|.+++.+|+|.|.|.+.|
T Consensus 8 p~~~~v~~G~~v~L~C~~~~~~--~~~~i~W~~~~~~-----~~---~-~~~~~~~~L~I~~v~~~DsG~Y~C~a~n 73 (85)
T cd05754 8 PRSQEVRPGADVSFICRAKSKS--PAYTLVWTRVGGG-----LP---S-RAMDFNGILTIRNVQLSDAGTYVCTGSN 73 (85)
T ss_pred CCceEEcCCCCEEEEEEcCCCC--CCcEEEEEECCCc-----CC---C-cccccCCEEEECCCCHHHCEEEEEEEec
Confidence 4567788999999999975422 3357999987643 21 1 1222345599999999999999999987
No 92
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=98.08 E-value=9e-06 Score=63.12 Aligned_cols=58 Identities=24% Similarity=0.428 Sum_probs=38.4
Q ss_pred eeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEe-ec-CceEEeeecC----CCCeEEEEEeCC
Q psy10772 290 VHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRT-VD-GGLVIMAVEE----LDAGKYDCWLGN 355 (378)
Q Consensus 290 ~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~-~~-~GLlI~~v~~----~DsG~Y~C~~~~ 355 (378)
+.|.|...+.|. |.++|+.++.+ |....+.++.. .. .-|+|..+.. +|+|.|.|.+.|
T Consensus 1 i~l~C~~~G~P~---P~v~W~k~g~~-----l~~~~~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N 64 (77)
T cd05733 1 IVIKCEAKGNPP---PTFSWTRNGTH-----FDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASN 64 (77)
T ss_pred CEEEeeCcccCC---CeEEEEECCeE-----CCCCCCCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEc
Confidence 368999876544 78999987654 32212334333 22 3477777643 789999999998
No 93
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=98.08 E-value=6.3e-06 Score=65.17 Aligned_cols=64 Identities=16% Similarity=0.244 Sum_probs=46.7
Q ss_pred ceeEEEEeCCeeeeeeeeccCCCCCCC-CeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCCe
Q psy10772 279 RLKQTVTWGQSVHLSCFVKLPASMANQ-PMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGNT 356 (378)
Q Consensus 279 ~k~~~~~~G~s~~L~C~~r~~~~La~~-~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~~ 356 (378)
.+.+.+.+|+++.|.|..++.+. | .|+|++++.+ |. . +......-|.|.++ .|+|.|.|.|.|.
T Consensus 5 P~~~~v~~G~~v~l~C~a~G~P~---P~~I~W~k~g~~-----l~--~--~~~~~~s~L~i~~~--~d~g~Y~C~A~N~ 69 (81)
T cd05749 5 PEDLSVTANTPFNLTCQAVGPPE---PVEILWWQGGSP-----LG--D--PPAPSPSVLNVPGL--NETSKFSCEAHNA 69 (81)
T ss_pred CCceEEcCCCCEEEEEEeeeecC---CeEEEEEECCEE-----CC--C--CCCCCCCEEEEccc--cCCeEEEEEEEec
Confidence 35678899999999999876655 6 6999998764 42 1 11223445777765 5899999999983
No 94
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=98.08 E-value=1.9e-05 Score=64.48 Aligned_cols=80 Identities=21% Similarity=0.230 Sum_probs=56.3
Q ss_pred ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeE-----eeccCcceEeec-Cc----eEEeeecCCCCeE
Q psy10772 279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQI-----KFRSDKFIRTVD-GG----LVIMAVEELDAGK 348 (378)
Q Consensus 279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l-----~~~~~~~~~~~~-~G----LlI~~v~~~DsG~ 348 (378)
-+.+++.+|+++.|+|....... ..+.|+..+.. -+ ....++|+..+. .| |.|.+|+.+|+|.
T Consensus 4 ~~nvtv~~G~ta~L~C~v~~~~~---~~v~w~~~~~~----~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~ 76 (95)
T cd05881 4 TEDVTVVEGEVAIISCRVKNNDD---SVIQLLNPNRQ----TIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGR 76 (95)
T ss_pred cCceEEcCCCcEEEEEEEccCCc---cEEEEEecCCc----EEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEE
Confidence 35688999999999999975532 35778743321 11 001344544332 23 8999999999999
Q ss_pred EEEEeCCeeeEEEeeee
Q psy10772 349 YDCWLGNTVLCTHNLTV 365 (378)
Q Consensus 349 Y~C~~~~~~l~~~~~~v 365 (378)
|.|+..-.+..++..+|
T Consensus 77 Y~Cqv~t~p~~~~~~~~ 93 (95)
T cd05881 77 YFCQLYTDPPQEAYTTI 93 (95)
T ss_pred EEEEEEcccCeEEEEEE
Confidence 99999988888888776
No 95
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=98.07 E-value=1.4e-05 Score=62.33 Aligned_cols=58 Identities=22% Similarity=0.390 Sum_probs=37.7
Q ss_pred eeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEe-ecCc-eEEeeecC----CCCeEEEEEeCC
Q psy10772 290 VHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRT-VDGG-LVIMAVEE----LDAGKYDCWLGN 355 (378)
Q Consensus 290 ~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~-~~~G-LlI~~v~~----~DsG~Y~C~~~~ 355 (378)
+.|.|...+.|. |.|+|+.++.+ |....+.++.. ..+| |+|..++. .|+|.|.|.+.|
T Consensus 1 ~~l~C~a~G~P~---P~i~W~k~g~~-----l~~~~~~~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N 64 (77)
T cd05874 1 IVIQCEAKGKPP---PSFSWTRNGTH-----FDIDKDPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTARN 64 (77)
T ss_pred CEEEeeCcccCC---CeEEEEECCeE-----CCCcCCCCEEEeCCCceEEEeccccCCCCCCCEEEEEEEEc
Confidence 468999876654 78999988654 32222333332 2345 44555553 478999999998
No 96
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=98.07 E-value=3.8e-05 Score=57.89 Aligned_cols=65 Identities=31% Similarity=0.427 Sum_probs=47.3
Q ss_pred eEEEEeCCeeeeeeeeccCCCCCCCCeEEEEe-cccCceeeEeeccCcceEeec----CceEEeeecCCCCeEEEEEeCC
Q psy10772 281 KQTVTWGQSVHLSCFVKLPASMANQPMSWYHY-SKDKGRYQIKFRSDKFIRTVD----GGLVIMAVEELDAGKYDCWLGN 355 (378)
Q Consensus 281 ~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~-~~~~~~~~l~~~~~~~~~~~~----~GLlI~~v~~~DsG~Y~C~~~~ 355 (378)
.+.+..|+++.|.|..... +.+.+.|+.+ +.. +. .++++.... .-|.|.++...|+|.|.|...+
T Consensus 3 ~~~~~~g~~~~l~C~~~~~---~~~~~~W~~~~~~~-----v~--~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~ 72 (86)
T smart00410 3 SVTVKEGESVTLSCEVSGS---PPPEVTWYKQGGKL-----LA--ESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATN 72 (86)
T ss_pred cEEEeCCCeEEEEEEEccC---CCCeEEEEECCCEE-----cC--CCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEc
Confidence 4667889999999998755 2358999987 322 21 223333333 3499999999999999999985
No 97
>smart00409 IG Immunoglobulin.
Probab=98.07 E-value=3.8e-05 Score=57.89 Aligned_cols=65 Identities=31% Similarity=0.427 Sum_probs=47.3
Q ss_pred eEEEEeCCeeeeeeeeccCCCCCCCCeEEEEe-cccCceeeEeeccCcceEeec----CceEEeeecCCCCeEEEEEeCC
Q psy10772 281 KQTVTWGQSVHLSCFVKLPASMANQPMSWYHY-SKDKGRYQIKFRSDKFIRTVD----GGLVIMAVEELDAGKYDCWLGN 355 (378)
Q Consensus 281 ~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~-~~~~~~~~l~~~~~~~~~~~~----~GLlI~~v~~~DsG~Y~C~~~~ 355 (378)
.+.+..|+++.|.|..... +.+.+.|+.+ +.. +. .++++.... .-|.|.++...|+|.|.|...+
T Consensus 3 ~~~~~~g~~~~l~C~~~~~---~~~~~~W~~~~~~~-----v~--~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~ 72 (86)
T smart00409 3 SVTVKEGESVTLSCEVSGS---PPPEVTWYKQGGKL-----LA--ESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATN 72 (86)
T ss_pred cEEEeCCCeEEEEEEEccC---CCCeEEEEECCCEE-----cC--CCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEc
Confidence 4667889999999998755 2358999987 322 21 223333333 3499999999999999999985
No 98
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=98.05 E-value=1.4e-05 Score=63.28 Aligned_cols=73 Identities=25% Similarity=0.425 Sum_probs=48.4
Q ss_pred CCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceE----eecCceEEeeecCCCCeEEEEEeCC-----ee
Q psy10772 287 GQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIR----TVDGGLVIMAVEELDAGKYDCWLGN-----TV 357 (378)
Q Consensus 287 G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~----~~~~GLlI~~v~~~DsG~Y~C~~~~-----~~ 357 (378)
|+++.|.|.....+. +.+.|.+.++..++ .+. ...+.. ....-|.|.+++.+|+|.|.|.+.+ ..
T Consensus 1 Ge~~~l~C~~~~~~~---~~~~W~~~~~~~~~-~~~--~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~ 74 (84)
T cd05861 1 GETITVNCIVQGNEV---VDFSWTYPGKDIGK-GIP--EVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKA 74 (84)
T ss_pred CCcEEEEEEEECCCc---cEEEEEECCccCCC-Cce--EEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcce
Confidence 788999999875433 68999987653221 010 000111 1123599999999999999999986 23
Q ss_pred eEEEeeee
Q psy10772 358 LCTHNLTV 365 (378)
Q Consensus 358 l~~~~~~v 365 (378)
-.+.+|+|
T Consensus 75 ~~sv~i~V 82 (84)
T cd05861 75 FKKVNITV 82 (84)
T ss_pred eEEEEEEE
Confidence 46667766
No 99
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=98.05 E-value=1.9e-05 Score=61.55 Aligned_cols=58 Identities=22% Similarity=0.348 Sum_probs=38.8
Q ss_pred eeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEe-ecCc-eEEeeecC----CCCeEEEEEeCC
Q psy10772 290 VHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRT-VDGG-LVIMAVEE----LDAGKYDCWLGN 355 (378)
Q Consensus 290 ~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~-~~~G-LlI~~v~~----~DsG~Y~C~~~~ 355 (378)
+.|.|.+.+.|. |.|+|+.++.+ +....+.++.. ..+| |+|..++. .|+|.|.|.+.|
T Consensus 1 ~~l~C~~~G~P~---P~v~W~k~g~~-----~~~~~~~~~~~~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N 64 (77)
T cd05875 1 IIIECEAKGNPV---PTFQWTRNGKF-----FNVAKDPRVSMRRRSGTLVIDFSGGGRPEDYEGEYQCFARN 64 (77)
T ss_pred CEEEEeccccCC---CEEEEEECCEE-----ccCcCCCcEEEeCCCceEEEeccCCCCCCCCCEEEEEEEEe
Confidence 358999876655 79999998753 32223444433 2344 66666642 469999999998
No 100
>KOG3513|consensus
Probab=98.03 E-value=4.9e-05 Score=84.08 Aligned_cols=83 Identities=29% Similarity=0.394 Sum_probs=61.8
Q ss_pred cceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCc-eEEeeecCCCCeEEEEEeCC-
Q psy10772 278 GRLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGG-LVIMAVEELDAGKYDCWLGN- 355 (378)
Q Consensus 278 ~~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~G-LlI~~v~~~DsG~Y~C~~~~- 355 (378)
.++.+.++.|..+.|.|.+. +-++|.+.|+--+. . +. .++|+.+.++| |.|.+++++|+|.|.|++.|
T Consensus 432 ~~~~~~a~~g~~v~i~C~~~---asP~p~~~W~k~~~-~----~~--~~~r~~i~edGtL~I~n~t~~DaG~YtC~A~N~ 501 (1051)
T KOG3513|consen 432 VERKVMAVVGGTVTIDCKPF---ASPKPKVSWLKGGE-K----LL--QSGRIRILEDGTLEISNVTRSDAGKYTCVAENK 501 (1051)
T ss_pred cceEEEEEeCCeEEEeeccC---CCCcceEEEEcCCc-c----cc--cCceEEECCCCcEEecccCcccCcEEEEEEEcc
Confidence 46778899999999999975 44557899975433 1 22 56677776666 99999999999999999998
Q ss_pred --eeeEEEeeeeccccc
Q psy10772 356 --TVLCTHNLTVDAHSN 370 (378)
Q Consensus 356 --~~l~~~~~~v~~~~c 370 (378)
..-.-=+|.|.++..
T Consensus 502 ~G~a~~~~~L~Vkd~tr 518 (1051)
T KOG3513|consen 502 LGKAESTGNLIVKDATR 518 (1051)
T ss_pred cCccceEEEEEEecCce
Confidence 344444566666544
No 101
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=97.97 E-value=3.6e-05 Score=61.87 Aligned_cols=74 Identities=26% Similarity=0.359 Sum_probs=46.5
Q ss_pred ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCcee-eEeeccCcceEee-----cCceEEeeecCCCCeEEEEE
Q psy10772 279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRY-QIKFRSDKFIRTV-----DGGLVIMAVEELDAGKYDCW 352 (378)
Q Consensus 279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~-~l~~~~~~~~~~~-----~~GLlI~~v~~~DsG~Y~C~ 352 (378)
.+.+.+.+|+++.|.|.....+ .+.+.|+..+...-.+ ......++|+... ..-|.|.+|+.+|+|.|.|.
T Consensus 4 ~~~~~v~~G~~v~L~C~~~~~~---~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~ 80 (95)
T cd05717 4 TQDVTVVEGGTATLKCRVKNND---NSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCS 80 (95)
T ss_pred CCcEEEcCCCCEEEEEEECCCC---CceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEE
Confidence 4678899999999999885432 3579997421110000 0000012333321 12399999999999999999
Q ss_pred eCC
Q psy10772 353 LGN 355 (378)
Q Consensus 353 ~~~ 355 (378)
+..
T Consensus 81 ~~~ 83 (95)
T cd05717 81 LYT 83 (95)
T ss_pred Eec
Confidence 876
No 102
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=97.96 E-value=8.6e-06 Score=62.05 Aligned_cols=57 Identities=21% Similarity=0.361 Sum_probs=38.9
Q ss_pred eeeeeecc-CCCCCCCCeEEEEecccCceeeEeeccCcce--Ee---ecCceEEeeecCCCCeEEEEEeCC
Q psy10772 291 HLSCFVKL-PASMANQPMSWYHYSKDKGRYQIKFRSDKFI--RT---VDGGLVIMAVEELDAGKYDCWLGN 355 (378)
Q Consensus 291 ~L~C~~r~-~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~--~~---~~~GLlI~~v~~~DsG~Y~C~~~~ 355 (378)
.|.|...+ .+. |.++|+.++.+ |........ +. ...-|.|.+++.+|+|.|.|.+.|
T Consensus 2 ~l~C~~~g~~P~---p~~~W~k~g~~-----l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N 64 (75)
T cd05750 2 VLKCEATSEYPS---LRFKWFKDGKE-----LNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVEN 64 (75)
T ss_pred EEEEEccCCCCC---ceEEEEcCCee-----ccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEE
Confidence 58999876 433 58999998754 321111111 11 123499999999999999999986
No 103
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=97.94 E-value=1.5e-05 Score=65.03 Aligned_cols=69 Identities=19% Similarity=0.305 Sum_probs=44.4
Q ss_pred EEEEeCCeeeeeeeeccCCCCCCCCeEEEEeccc-----CceeeEee----ccCcceEe----ecCc---eEEeeecCCC
Q psy10772 282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKD-----KGRYQIKF----RSDKFIRT----VDGG---LVIMAVEELD 345 (378)
Q Consensus 282 ~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~-----~~~~~l~~----~~~~~~~~----~~~G---LlI~~v~~~D 345 (378)
+.+..|+++.|+|.....+. +.+.|++++.. +++ +.. +..+|+-. .+.| |.|.+++.+|
T Consensus 2 v~~~~G~~VtL~C~~s~~~~---~~i~W~~~~~k~~~g~~~~--l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sD 76 (94)
T cd07690 2 VLGKKGDTAELPCTASQKKS---IQFHWKNSNQIKILGNQGS--FLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIED 76 (94)
T ss_pred eEeeCCCCEEEEEEeCCCCC---cEEEEEECCcEEccCcCCE--EEEecccccCCCCceecccCCCCeEEEEECCCCHHH
Confidence 56778999999998754332 57999854311 111 100 01112111 1233 9999999999
Q ss_pred CeEEEEEeCC
Q psy10772 346 AGKYDCWLGN 355 (378)
Q Consensus 346 sG~Y~C~~~~ 355 (378)
+|.|.|...+
T Consensus 77 sgtY~C~v~~ 86 (94)
T cd07690 77 SDTYICEVED 86 (94)
T ss_pred CEEEEEEECC
Confidence 9999999987
No 104
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=97.94 E-value=1.5e-05 Score=61.36 Aligned_cols=59 Identities=22% Similarity=0.438 Sum_probs=38.8
Q ss_pred eeeeeeeccCCCCCCCCeEEEEecccCceeeEeec--cCcceEe----ecCceEEeeecCCCCeEEEEEeCC
Q psy10772 290 VHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFR--SDKFIRT----VDGGLVIMAVEELDAGKYDCWLGN 355 (378)
Q Consensus 290 ~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~--~~~~~~~----~~~GLlI~~v~~~DsG~Y~C~~~~ 355 (378)
+.|.|...+. .+.+.++|++|+.+ |... ...++.. ....|.|.+++.+|+|.|.|.+.|
T Consensus 1 ~~L~C~a~~~--~p~~~~~W~~~g~~-----i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N 65 (76)
T cd05895 1 LVLRCETVSE--YPSLRFKWFKNGKE-----IGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSS 65 (76)
T ss_pred CEEEEecccC--CCCCceEEEECCcc-----cccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEe
Confidence 3689986421 22357899998765 3211 1122221 123499999999999999999987
No 105
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=97.92 E-value=3.5e-05 Score=64.15 Aligned_cols=72 Identities=17% Similarity=0.201 Sum_probs=47.9
Q ss_pred eCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceE-e-e------cCceEEeeec-CCCCeEEEEEeCC-
Q psy10772 286 WGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIR-T-V------DGGLVIMAVE-ELDAGKYDCWLGN- 355 (378)
Q Consensus 286 ~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~-~-~------~~GLlI~~v~-~~DsG~Y~C~~~~- 355 (378)
.|..+.|.|...+.+. |.++|+.++.. |.. .+.++. . . ..-|.|.++. ..|+|.|.|.+.|
T Consensus 22 ~g~~v~L~C~a~G~P~---p~i~W~k~g~~-----l~~-~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~G~Y~C~A~N~ 92 (109)
T cd05773 22 GSSDANLVCQAQGVPR---VQFRWAKNGVP-----LDL-GNPRYEETTEHTGTVHTSILTIINVSAALDYALFTCTAHNS 92 (109)
T ss_pred CCCEEEEEEECcccCC---CEEEEEECCEE-----CCC-CCCeEEEEeeccCccceeEEEECcCCccCCCEEEEEEEEeC
Confidence 4689999999875443 68999988753 321 111221 1 1 1237888987 5999999999998
Q ss_pred --eeeEEEeeeec
Q psy10772 356 --TVLCTHNLTVD 366 (378)
Q Consensus 356 --~~l~~~~~~v~ 366 (378)
..-.+..|.|.
T Consensus 93 ~G~~~~~i~L~~~ 105 (109)
T cd05773 93 LGEDSLDIQLVST 105 (109)
T ss_pred CccCcEEEEEEec
Confidence 44666666554
No 106
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=97.85 E-value=8.8e-05 Score=58.77 Aligned_cols=66 Identities=23% Similarity=0.315 Sum_probs=43.6
Q ss_pred CCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEe--------e---ccCcceEeecCc-eEEeeecCCCCeEEEEEeC
Q psy10772 287 GQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIK--------F---RSDKFIRTVDGG-LVIMAVEELDAGKYDCWLG 354 (378)
Q Consensus 287 G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~--------~---~~~~~~~~~~~G-LlI~~v~~~DsG~Y~C~~~ 354 (378)
|++|.|+|... +.. ...|.|+++........+. . +-..|+....+| |.|.+++.+|+|.|.|...
T Consensus 1 G~~VtL~c~~~-~~~--~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~l~~~DsG~Y~c~v~ 77 (92)
T cd05741 1 GESVTLPVSNL-PEN--LQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPNGSLLIQNLTKEDSGTYTLQII 77 (92)
T ss_pred CCcEEEEcccC-CCC--CEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCCceEEEccCCchhcEEEEEEEE
Confidence 78999999764 222 2379999986442221111 0 112344444445 9999999999999999988
Q ss_pred C
Q psy10772 355 N 355 (378)
Q Consensus 355 ~ 355 (378)
.
T Consensus 78 ~ 78 (92)
T cd05741 78 S 78 (92)
T ss_pred c
Confidence 6
No 107
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=97.83 E-value=8.2e-05 Score=56.50 Aligned_cols=58 Identities=34% Similarity=0.600 Sum_probs=44.6
Q ss_pred EEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCC
Q psy10772 282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGN 355 (378)
Q Consensus 282 ~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~ 355 (378)
..+.+|+++.|.|...+.+. +.+.|+.++.. +. .+.++|.|..++..|+|.|.|.+.+
T Consensus 9 ~~v~~g~~~~l~C~~~~~p~---~~~~w~~~~~~-----~~--------~~~~~~~~~~~~~~~~g~y~C~~~~ 66 (80)
T PF13895_consen 9 QSVEEGDSVTLTCSVSGNPP---PQVQWYKNGSP-----IN--------SSQNGLFIPNVSPEDSGNYTCRASN 66 (80)
T ss_dssp SEEETTSEEEEEEEEESSSS---SEEEEEETTEE-----EE--------EESSEEEESSEEGGGTEEEEEEEEE
T ss_pred eEEeCCCcEEEEEEEEcccc---eeeeeeeeeee-----ee--------eeeeeeeeeeeccccCEEEEEEEEe
Confidence 45788999999999875434 47999876532 42 2234488899999999999999986
No 108
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=97.83 E-value=8e-05 Score=61.02 Aligned_cols=74 Identities=20% Similarity=0.303 Sum_probs=49.4
Q ss_pred ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEee-------ccCcceEee------cCceEEeeecCCC
Q psy10772 279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF-------RSDKFIRTV------DGGLVIMAVEELD 345 (378)
Q Consensus 279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~-------~~~~~~~~~------~~GLlI~~v~~~D 345 (378)
.+.+.+.+|+++.|+|..... +...+.|+.+.......-|.. ...+|+... .--|.|.+++.+|
T Consensus 5 ~~~v~~~~G~~v~L~C~~~~~---~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~D 81 (109)
T cd04983 5 PQSLSVQEGENVTLNCNYSTS---TFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSD 81 (109)
T ss_pred CCceEEcCCCCEEEEEEECCC---CccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHH
Confidence 456789999999999998644 234799988753222111110 022344322 1249999999999
Q ss_pred CeEEEEEeCC
Q psy10772 346 AGKYDCWLGN 355 (378)
Q Consensus 346 sG~Y~C~~~~ 355 (378)
+|.|.|.+.+
T Consensus 82 sG~Y~C~~~~ 91 (109)
T cd04983 82 SAVYFCALSE 91 (109)
T ss_pred CEEEEEEEec
Confidence 9999999875
No 109
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=97.81 E-value=0.00011 Score=61.01 Aligned_cols=73 Identities=22% Similarity=0.302 Sum_probs=49.0
Q ss_pred eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeE-eecc-----------CcceEeecCc-eEEeeecCCCC
Q psy10772 280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQI-KFRS-----------DKFIRTVDGG-LVIMAVEELDA 346 (378)
Q Consensus 280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l-~~~~-----------~~~~~~~~~G-LlI~~v~~~Ds 346 (378)
....+.+|+++.|.|.- .|.++. .++|+.......+.+| ..++ ++|.....+| |+|++|+..|+
T Consensus 6 ~p~~~~~G~~V~L~v~~-~p~~~~--~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ngSL~I~~v~~~D~ 82 (105)
T cd05774 6 VPPQVAEGENVLLLVHN-LPENLL--AYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNGSLLIQNVTQKDT 82 (105)
T ss_pred cCCcccCCCCEEEEecC-CCCCce--EEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCCcEEEecCCcccC
Confidence 34567889999999965 455543 6899885322212222 1111 3455555555 99999999999
Q ss_pred eEEEEEeCC
Q psy10772 347 GKYDCWLGN 355 (378)
Q Consensus 347 G~Y~C~~~~ 355 (378)
|.|.|...+
T Consensus 83 G~Y~~~v~~ 91 (105)
T cd05774 83 GFYTLQTIT 91 (105)
T ss_pred EEEEEEEEe
Confidence 999998876
No 110
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=97.79 E-value=0.00016 Score=60.77 Aligned_cols=77 Identities=22% Similarity=0.397 Sum_probs=48.6
Q ss_pred ceeEEEEeCCeeeeeeeeccCCCCC-CCCeEEEEecccCceeeEe--ec------cC----cceEee------cCceEEe
Q psy10772 279 RLKQTVTWGQSVHLSCFVKLPASMA-NQPMSWYHYSKDKGRYQIK--FR------SD----KFIRTV------DGGLVIM 339 (378)
Q Consensus 279 ~k~~~~~~G~s~~L~C~~r~~~~La-~~~v~W~~~~~~~~~~~l~--~~------~~----~~~~~~------~~GLlI~ 339 (378)
.+.+.+.+|+++.|+|.-.+..+++ ...|.|+++....+..++. .. .. .|+... +-.|.|.
T Consensus 5 ~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~ 84 (115)
T cd05880 5 SKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIW 84 (115)
T ss_pred CceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEe
Confidence 4678899999999999875433332 1258998763221111111 00 11 122111 2349999
Q ss_pred eecCCCCeEEEEEeCC
Q psy10772 340 AVEELDAGKYDCWLGN 355 (378)
Q Consensus 340 ~v~~~DsG~Y~C~~~~ 355 (378)
+|+.+|+|.|.|...+
T Consensus 85 ~v~~~D~G~Y~C~v~~ 100 (115)
T cd05880 85 QLQPTDNGTYTCQVKN 100 (115)
T ss_pred eCChhhCEEEEEEEEe
Confidence 9999999999998885
No 111
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=97.74 E-value=8.9e-05 Score=60.91 Aligned_cols=74 Identities=22% Similarity=0.323 Sum_probs=47.9
Q ss_pred cceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEeccc-----CceeeEeeccCcceEeecCceEEeeecCCC-CeEEEE
Q psy10772 278 GRLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKD-----KGRYQIKFRSDKFIRTVDGGLVIMAVEELD-AGKYDC 351 (378)
Q Consensus 278 ~~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~-----~~~~~l~~~~~~~~~~~~~GLlI~~v~~~D-sG~Y~C 351 (378)
.++.+.+.+|+.+.|.|...+-+. +..|.|..++.. .+||.+.-+.... -...-|.|.++...| .|.|.|
T Consensus 7 ~~~s~~~~~G~~~~L~C~~~s~P~--P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~--g~~S~L~I~~~~~~d~~g~Y~C 82 (98)
T cd05898 7 SEQVQYAVRGERGKVKCFIGSTPP--PDRIAWAWKENVLESGTSERYTVERTSTGS--GVLSTLTINNIMEADFQTHYNC 82 (98)
T ss_pred cCceEEEeCCCcEEEEEEEccCCC--CcEEEEEEccccccCCCCCCEEEEEEccCC--CcEEEEEECCCccccCCcEEEE
Confidence 467889999999999999843322 125789887543 2233332110000 011129999998878 899999
Q ss_pred EeCC
Q psy10772 352 WLGN 355 (378)
Q Consensus 352 ~~~~ 355 (378)
.+.|
T Consensus 83 ~a~N 86 (98)
T cd05898 83 TAWN 86 (98)
T ss_pred EEEe
Confidence 9987
No 112
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=97.74 E-value=7.1e-05 Score=60.65 Aligned_cols=74 Identities=22% Similarity=0.294 Sum_probs=48.6
Q ss_pred EEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEee----------ccCcceEee------cCceEEeeecCCC
Q psy10772 282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF----------RSDKFIRTV------DGGLVIMAVEELD 345 (378)
Q Consensus 282 ~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~----------~~~~~~~~~------~~GLlI~~v~~~D 345 (378)
+++.+|+++.|+|..... .+...+.|+.......+..+.. ...+|+... .--|.|.+++.+|
T Consensus 1 ~~v~~G~~v~L~C~~~~~--~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D 78 (105)
T cd00099 1 LSVSEGESVTLSCTYSGS--FSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPED 78 (105)
T ss_pred CeecCCCCEEEEEEEeCC--cCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHH
Confidence 357789999999998754 1224789988754322222211 112343322 1248999999999
Q ss_pred CeEEEEEeCCee
Q psy10772 346 AGKYDCWLGNTV 357 (378)
Q Consensus 346 sG~Y~C~~~~~~ 357 (378)
+|.|.|.+.+..
T Consensus 79 ~G~Y~C~v~~~~ 90 (105)
T cd00099 79 SAVYYCAVSLSG 90 (105)
T ss_pred CEEEEEEEecCC
Confidence 999999998643
No 113
>PHA02785 IL-beta-binding protein; Provisional
Probab=97.74 E-value=0.00041 Score=68.74 Aligned_cols=123 Identities=16% Similarity=0.216 Sum_probs=69.3
Q ss_pred EEEEEEEEeeeecCCCeEEEEEEECCCeeEEEEeceeeeeccCC-CCCcccccccceeEEEEeCCeeeeeeeeccCCCCC
Q psy10772 225 HLVVDVVQYEVFGTTSEYIVYFAATTTLRTVFVKVRLLQDVSNT-SDSICESSVGRLKQTVTWGQSVHLSCFVKLPASMA 303 (378)
Q Consensus 225 ~IaVd~v~~~~~~~~~~ytV~flGT~~G~v~~V~~~~lqd~~~~-~~~~C~~~~~~k~~~~~~G~s~~L~C~~r~~~~La 303 (378)
.+.+..++..| .+.|++...-...|....+...+.-.+... -|.... ..+.+.+..|+++.|.|...+.+...
T Consensus 178 ~L~i~~v~~~d---~G~Y~C~~~n~~g~~~~~~t~~v~l~V~~~~~pp~~~---~p~~~~~~~G~~v~L~C~a~g~P~~~ 251 (326)
T PHA02785 178 IITIEDVRKND---AGYYTCVLKYIYGDKTYNVTRIVKLEVRDRIIPPTMQ---LPEGVVTSIGSNLTIACRVSLRPPTT 251 (326)
T ss_pred eEEEeecChhh---CeEEEEEEEeccCCEEEeEEEEEEEEEeccCCCceec---CCCcEEecCCCcEEEEEEEECCCCCC
Confidence 46666666665 688999854433444332321111112111 112221 23456677899999999997543322
Q ss_pred CCCeEEEEeccc--------CceeeEeeccCcc----eEeecCceEEeeecCCCCeEEEEEeCC
Q psy10772 304 NQPMSWYHYSKD--------KGRYQIKFRSDKF----IRTVDGGLVIMAVEELDAGKYDCWLGN 355 (378)
Q Consensus 304 ~~~v~W~~~~~~--------~~~~~l~~~~~~~----~~~~~~GLlI~~v~~~DsG~Y~C~~~~ 355 (378)
.+.+.|+.|+.. .++.++. .... -.....-|.|.+|+.+|+|.|.|.+.+
T Consensus 252 ~~~v~W~kng~~i~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~L~I~~V~~~D~G~Y~C~A~n 313 (326)
T PHA02785 252 DADVFWISNGMYYEEDDEDGDGRISVA--NKIYTTDKRRVITSRLNINPVKEEDATTFTCMAFT 313 (326)
T ss_pred CceEEEEECCEECCCcCCCCceeEEEe--cCccccccceeeeEEEEECCcchhcCeeeEEEEEe
Confidence 347999998753 1111111 1000 001123499999999999999999987
No 114
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=97.70 E-value=0.00017 Score=59.54 Aligned_cols=73 Identities=23% Similarity=0.298 Sum_probs=48.9
Q ss_pred ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEee--------c---cCcceEeec-----CceEEeeec
Q psy10772 279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF--------R---SDKFIRTVD-----GGLVIMAVE 342 (378)
Q Consensus 279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~--------~---~~~~~~~~~-----~GLlI~~v~ 342 (378)
.+.+.+.+|+++.|.|.... + .+.|.|+.+...++..-|-. . ..+|+.... --|.|.+++
T Consensus 5 p~~~~v~~G~~v~l~C~~~~-~---~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~ 80 (110)
T cd05899 5 PRYLIKGRGQSVTLRCSQTS-G---HDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAE 80 (110)
T ss_pred CCceEEcCCCcEEEEEEECC-C---CCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCC
Confidence 34678899999999999865 2 24799988854322211110 0 123444322 239999999
Q ss_pred CCCCeEEEEEeCC
Q psy10772 343 ELDAGKYDCWLGN 355 (378)
Q Consensus 343 ~~DsG~Y~C~~~~ 355 (378)
.+|+|.|.|.+.+
T Consensus 81 ~~Dsg~Y~Ca~~~ 93 (110)
T cd05899 81 PEDSAVYLCASSL 93 (110)
T ss_pred hhhCEEEEEEeeC
Confidence 9999999999864
No 115
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=97.63 E-value=0.00014 Score=60.85 Aligned_cols=77 Identities=21% Similarity=0.375 Sum_probs=48.1
Q ss_pred ceeEEEEeCCeeeeeeeeccCCCC-CCCCeEEEEecccCce-eeEe-ec-------cC----cceEeec------CceEE
Q psy10772 279 RLKQTVTWGQSVHLSCFVKLPASM-ANQPMSWYHYSKDKGR-YQIK-FR-------SD----KFIRTVD------GGLVI 338 (378)
Q Consensus 279 ~k~~~~~~G~s~~L~C~~r~~~~L-a~~~v~W~~~~~~~~~-~~l~-~~-------~~----~~~~~~~------~GLlI 338 (378)
.+.+.+.+|+++.|+|........ ....|.|+++....+. ..+- .. .. .|+.... -.|.|
T Consensus 5 p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I 84 (116)
T cd05715 5 PREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIVI 84 (116)
T ss_pred CCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEEE
Confidence 456788999999999987543321 1135899886532221 1111 00 01 1222221 23999
Q ss_pred eeecCCCCeEEEEEeCC
Q psy10772 339 MAVEELDAGKYDCWLGN 355 (378)
Q Consensus 339 ~~v~~~DsG~Y~C~~~~ 355 (378)
.+|+.+|+|.|.|...+
T Consensus 85 ~~v~~~D~G~Y~C~v~~ 101 (116)
T cd05715 85 HNLQFTDNGTYTCDVKN 101 (116)
T ss_pred eeCCcccCEEEEEEEEe
Confidence 99999999999999886
No 116
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=97.63 E-value=0.00019 Score=57.09 Aligned_cols=66 Identities=23% Similarity=0.364 Sum_probs=42.1
Q ss_pred CCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccC-cceE----eecCceEEeeecCCCCeEEEEEeCC
Q psy10772 287 GQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSD-KFIR----TVDGGLVIMAVEELDAGKYDCWLGN 355 (378)
Q Consensus 287 G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~-~~~~----~~~~GLlI~~v~~~DsG~Y~C~~~~ 355 (378)
|+++.|.|.....+.+. ..+.|.+.++...+ +..... ++.. ....-|.|.+++.+|+|.|.|.+.|
T Consensus 1 Ge~~~L~C~~~~~~~~~-~~~~W~~p~~~~~~--~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n 71 (86)
T cd05862 1 GEKLVLNCTARTELNVG-IDFQWDYPGKKEQR--AKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASS 71 (86)
T ss_pred CCcEEEEEEEEeCCCCc-EEEEEEcCCccccc--ceecccccccccccceeeeEEEEecCCcccCEEEEEEEee
Confidence 78899999996554432 25799887653211 110011 1111 1123499999999999999999987
No 117
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=97.60 E-value=0.00042 Score=56.79 Aligned_cols=82 Identities=22% Similarity=0.324 Sum_probs=49.7
Q ss_pred eCCeeeeeeeeccCC---CCCCCCeEEEEeccc-CceeeEee----------ccCcceEe-----ecCceEEeeecCCCC
Q psy10772 286 WGQSVHLSCFVKLPA---SMANQPMSWYHYSKD-KGRYQIKF----------RSDKFIRT-----VDGGLVIMAVEELDA 346 (378)
Q Consensus 286 ~G~s~~L~C~~r~~~---~La~~~v~W~~~~~~-~~~~~l~~----------~~~~~~~~-----~~~GLlI~~v~~~Ds 346 (378)
.|+++.|+|.-...+ ......|.|+.+..+ .+...+.. +...|+.. .+-.|.|.+|+.+|+
T Consensus 1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~ 80 (106)
T cd05714 1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS 80 (106)
T ss_pred CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence 489999999876543 233458999987311 11111110 01112222 234499999999999
Q ss_pred eEEEEEeCCe---eeEEEeeeecc
Q psy10772 347 GKYDCWLGNT---VLCTHNLTVDA 367 (378)
Q Consensus 347 G~Y~C~~~~~---~l~~~~~~v~~ 367 (378)
|.|.|...+. .-....|+|-+
T Consensus 81 G~Y~C~v~~~~~~~~~~v~L~V~~ 104 (106)
T cd05714 81 GRYRCEVIDGIEDEQDTVELEVRG 104 (106)
T ss_pred EEEEEEEEcCCCceEEEEEEEEEE
Confidence 9999999863 34555555543
No 118
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=97.59 E-value=0.00042 Score=56.71 Aligned_cols=82 Identities=17% Similarity=0.208 Sum_probs=49.2
Q ss_pred eCCeeeeeeeeccCCC---CCCCCeEEEEecccCceeeEee-----------ccCcceEeec-----CceEEeeecCCCC
Q psy10772 286 WGQSVHLSCFVKLPAS---MANQPMSWYHYSKDKGRYQIKF-----------RSDKFIRTVD-----GGLVIMAVEELDA 346 (378)
Q Consensus 286 ~G~s~~L~C~~r~~~~---La~~~v~W~~~~~~~~~~~l~~-----------~~~~~~~~~~-----~GLlI~~v~~~Ds 346 (378)
.|+++.|+|.....+. .....|.|+.+....+...+.. +-.+|+.... -.|.|.+++.+|+
T Consensus 1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds 80 (106)
T cd05877 1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDY 80 (106)
T ss_pred CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHC
Confidence 4899999998654421 2223699998753211110100 0123444321 2499999999999
Q ss_pred eEEEEEeCC---eeeEEEeeeecc
Q psy10772 347 GKYDCWLGN---TVLCTHNLTVDA 367 (378)
Q Consensus 347 G~Y~C~~~~---~~l~~~~~~v~~ 367 (378)
|.|.|...+ ..-..-.|.|+.
T Consensus 81 G~Y~C~v~~~~~~~~~~~~l~v~~ 104 (106)
T cd05877 81 GRYRCEVIDGLEDESVVVALRLRG 104 (106)
T ss_pred EEEEEEEEecccceEEEEEEEEEE
Confidence 999999875 344444555543
No 119
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=97.58 E-value=0.00029 Score=56.99 Aligned_cols=72 Identities=17% Similarity=0.344 Sum_probs=46.8
Q ss_pred EEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEee-c------cCcceEee-cCc---eEEeeecCCCCeEEEE
Q psy10772 283 TVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF-R------SDKFIRTV-DGG---LVIMAVEELDAGKYDC 351 (378)
Q Consensus 283 ~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~-~------~~~~~~~~-~~G---LlI~~v~~~DsG~Y~C 351 (378)
++.+|+++.|.|..+... .....+.|+.+....+...|-. . .++|+... +.+ |.|.+++.+|+|.|.|
T Consensus 2 ~v~~G~~v~l~C~~~~~~-~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C 80 (98)
T cd04984 2 SVSPGETVTITCTGSSGN-ISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEADYYC 80 (98)
T ss_pred ccCCCCCEEEEEEEcCCC-cCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCEEEEE
Confidence 567899999999986541 1223699988865433221211 0 12244332 223 9999999999999999
Q ss_pred EeCC
Q psy10772 352 WLGN 355 (378)
Q Consensus 352 ~~~~ 355 (378)
...+
T Consensus 81 ~~~~ 84 (98)
T cd04984 81 QVWD 84 (98)
T ss_pred EEcc
Confidence 9764
No 120
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=97.56 E-value=0.00016 Score=58.75 Aligned_cols=79 Identities=19% Similarity=0.229 Sum_probs=47.0
Q ss_pred EeCCeeeeeeeeccCCCCCCCCeEEEEeccc----Cc---eeeEeecc---CcceEeec--CceEEeeecCCCCeEEEEE
Q psy10772 285 TWGQSVHLSCFVKLPASMANQPMSWYHYSKD----KG---RYQIKFRS---DKFIRTVD--GGLVIMAVEELDAGKYDCW 352 (378)
Q Consensus 285 ~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~----~~---~~~l~~~~---~~~~~~~~--~GLlI~~v~~~DsG~Y~C~ 352 (378)
+.|++|.|+|....+.. ...|.|+++... .. ........ .+|+.... -.|.|.+++.+|+|.|.|.
T Consensus 2 ~~G~sVtL~c~~~~~~~--~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~ 79 (97)
T cd05775 2 ILGGSVTLPLNIPDGTE--IESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAE 79 (97)
T ss_pred ccCCeEEEeCCCCCCcE--EEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEE
Confidence 57999999997632122 236899986321 00 00111101 12443322 2399999999999999998
Q ss_pred eCC----eeeEEEeeee
Q psy10772 353 LGN----TVLCTHNLTV 365 (378)
Q Consensus 353 ~~~----~~l~~~~~~v 365 (378)
... ...+.+.|.|
T Consensus 80 v~~~~~~~~~~~f~L~v 96 (97)
T cd05775 80 INTKNGVTITKEFTLHI 96 (97)
T ss_pred EEcCCCCeEEEEEEEEe
Confidence 875 3355555544
No 121
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=97.55 E-value=0.00061 Score=57.63 Aligned_cols=76 Identities=25% Similarity=0.316 Sum_probs=48.5
Q ss_pred eeEEEEeCCeeeeeeeeccCCCC-CCCCeEEEEeccc-----------CceeeEe--eccCcceEe------ecCceEEe
Q psy10772 280 LKQTVTWGQSVHLSCFVKLPASM-ANQPMSWYHYSKD-----------KGRYQIK--FRSDKFIRT------VDGGLVIM 339 (378)
Q Consensus 280 k~~~~~~G~s~~L~C~~r~~~~L-a~~~v~W~~~~~~-----------~~~~~l~--~~~~~~~~~------~~~GLlI~ 339 (378)
..+.+..|+++.|+|.-.+.... +...|+|.+.... .+..... .+-.+|+.. .+-.|.|.
T Consensus 6 ~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I~ 85 (116)
T cd05879 6 REVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVIH 85 (116)
T ss_pred ceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEEc
Confidence 35678899999999998654322 3458999765321 1110000 001124321 23349999
Q ss_pred eecCCCCeEEEEEeCC
Q psy10772 340 AVEELDAGKYDCWLGN 355 (378)
Q Consensus 340 ~v~~~DsG~Y~C~~~~ 355 (378)
+|+.+|+|.|.|...|
T Consensus 86 nv~~sD~G~Y~C~v~n 101 (116)
T cd05879 86 NLDYTDNGTFTCDVKN 101 (116)
T ss_pred cCCcccCEEEEEEEEc
Confidence 9999999999999987
No 122
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=97.55 E-value=9.6e-05 Score=58.42 Aligned_cols=60 Identities=22% Similarity=0.221 Sum_probs=43.3
Q ss_pred EEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCC
Q psy10772 283 TVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGN 355 (378)
Q Consensus 283 ~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~ 355 (378)
.+.+|+++.|.|..+.. .+.+++.|+.++.. +. .. ....-|.|.+++.+|+|.|.|.+.+
T Consensus 10 ~V~~G~~vtL~C~~~~~--~~~~~~~w~k~g~~-----~~--~~----~~~~~l~I~~~~~~dsG~Y~C~~~~ 69 (83)
T cd05753 10 VVFEGEPLVLRCHGWKN--KPVYKVTYYRDGKA-----KK--YS----HSNSNLSIPQATLSDSGSYHCSGII 69 (83)
T ss_pred eecCCCCEEEEeeCCCC--CcceEEEEEECCeE-----cc--cc----CCCceEEECccCHHHCEEEEEEEEe
Confidence 57789999999997432 22246899987643 32 11 1123489999999999999999986
No 123
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=97.50 E-value=0.00051 Score=57.16 Aligned_cols=75 Identities=20% Similarity=0.280 Sum_probs=48.6
Q ss_pred eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEe-e-----------ccCcceEeecC------ceEEeee
Q psy10772 280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIK-F-----------RSDKFIRTVDG------GLVIMAV 341 (378)
Q Consensus 280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~-~-----------~~~~~~~~~~~------GLlI~~v 341 (378)
+.+.+.+|+++.|.|..+.. ..+.+.+.|+.+....+...|- . ....|+....+ -|.|.++
T Consensus 6 ~~~~~~~G~~v~l~C~~~~~-~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~ 84 (116)
T cd04982 6 LSITREESKSVTISCKVSGI-DFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQNL 84 (116)
T ss_pred CeEEeCCCCCEEEEEEEeCC-CccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEEC
Confidence 45678889999999998642 1233579999875432221111 0 01234443211 2899999
Q ss_pred cCCCCeEEEEEeCC
Q psy10772 342 EELDAGKYDCWLGN 355 (378)
Q Consensus 342 ~~~DsG~Y~C~~~~ 355 (378)
+.+|+|.|.|.+..
T Consensus 85 ~~~Dsg~Y~C~~~~ 98 (116)
T cd04982 85 EKEDSATYYCAYWE 98 (116)
T ss_pred CHHHCEEEEEEEec
Confidence 99999999999864
No 124
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=97.48 E-value=0.00027 Score=57.75 Aligned_cols=68 Identities=22% Similarity=0.208 Sum_probs=44.9
Q ss_pred EEEEeCCeeeeeeee-ccC-CCCCCCCeEEEEecccCceeeEeeccCcceEe--ecCceEEeeecCCCCeEEEEEeCC
Q psy10772 282 QTVTWGQSVHLSCFV-KLP-ASMANQPMSWYHYSKDKGRYQIKFRSDKFIRT--VDGGLVIMAVEELDAGKYDCWLGN 355 (378)
Q Consensus 282 ~~~~~G~s~~L~C~~-r~~-~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~--~~~GLlI~~v~~~DsG~Y~C~~~~ 355 (378)
+.+..|.+..|.|.- ..- ++-..|.|+|+.++.+ |.. .++++.. ...-|+|.+|..+|+|.|.|.+.+
T Consensus 5 ~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~-----l~~-~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~~~~ 76 (95)
T cd05897 5 QILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVL-----LDK-DNEKFYSLKGSTYLHIIDVSLNDSGYYTCKLQF 76 (95)
T ss_pred eEeccccCcEEECCCHHHcccCCCCCcEEEccCCEE-----CcC-CCcceEecCCCCEEEEEEcChhhCEEEEEEEEE
Confidence 456778899999952 100 0112358999988754 321 2223222 223499999999999999999986
No 125
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=97.46 E-value=0.00054 Score=55.37 Aligned_cols=76 Identities=26% Similarity=0.359 Sum_probs=50.7
Q ss_pred ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEe------------eccCcce-EeecCc-----eEEee
Q psy10772 279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIK------------FRSDKFI-RTVDGG-----LVIMA 340 (378)
Q Consensus 279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~------------~~~~~~~-~~~~~G-----LlI~~ 340 (378)
...+.+.+|+++.|+|.... ......+.|+.+........+- ....+++ +....+ |.|.+
T Consensus 8 ~~~v~~~~G~~v~L~C~~~~--~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~ 85 (114)
T PF07686_consen 8 PSPVTVQEGESVTLPCSYSS--SSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKN 85 (114)
T ss_dssp ESEEEEETTSEEEEEEEEES--SSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESS
T ss_pred CCeEEEecCCCEEEEEEEeC--CCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECC
Confidence 45678899999999999972 2222378999875522211111 0112233 334445 99999
Q ss_pred ecCCCCeEEEEEeCCe
Q psy10772 341 VEELDAGKYDCWLGNT 356 (378)
Q Consensus 341 v~~~DsG~Y~C~~~~~ 356 (378)
|+..|+|.|.|.....
T Consensus 86 l~~~DsG~Y~C~v~~~ 101 (114)
T PF07686_consen 86 LQPSDSGTYFCQVSTS 101 (114)
T ss_dssp ESGGGEEEEEEEEEES
T ss_pred CCcCcCEEEEEEEEEC
Confidence 9999999999998753
No 126
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=97.45 E-value=0.00061 Score=55.87 Aligned_cols=74 Identities=20% Similarity=0.310 Sum_probs=47.4
Q ss_pred eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEee-c------cCcceEeecC----ceEEeeecCCCCeE
Q psy10772 280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF-R------SDKFIRTVDG----GLVIMAVEELDAGK 348 (378)
Q Consensus 280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~-~------~~~~~~~~~~----GLlI~~v~~~DsG~ 348 (378)
+.+.+.+|+++.|.|...... ....+.|+.+...++...|-. . ..+|+..... -|-|.+++.+|+|.
T Consensus 8 ~~~~v~~G~~v~L~C~~~~~~--~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Dsg~ 85 (106)
T cd04980 8 ATLSVSPGESATISCKASQSV--SSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPEDAAV 85 (106)
T ss_pred CcEEECCCCCEEEEEEECCCC--CCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChHHCEE
Confidence 456788999999999975332 123699998754322211210 0 1123333221 28899999999999
Q ss_pred EEEEeCC
Q psy10772 349 YDCWLGN 355 (378)
Q Consensus 349 Y~C~~~~ 355 (378)
|.|.+.+
T Consensus 86 Y~Ca~~~ 92 (106)
T cd04980 86 YYCQQYG 92 (106)
T ss_pred EEEEEeC
Confidence 9999864
No 127
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=97.45 E-value=0.00051 Score=55.09 Aligned_cols=77 Identities=21% Similarity=0.365 Sum_probs=46.3
Q ss_pred CeeeeeeeeccCCCCCCCCeEEEEecccCceeeEe---------ecc--CcceEe-----ecCceEEeeecCCCCeEEEE
Q psy10772 288 QSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIK---------FRS--DKFIRT-----VDGGLVIMAVEELDAGKYDC 351 (378)
Q Consensus 288 ~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~---------~~~--~~~~~~-----~~~GLlI~~v~~~DsG~Y~C 351 (378)
+++.|+|......++....|.|+.+.... +..+- ..+ ..|+.. .+-.|.|.+|+.+|+|.|.|
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~-~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C 79 (98)
T cd05718 1 ESVTLECSFPVPGPVQITQVTWMKITGGS-KQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGNYIC 79 (98)
T ss_pred CCEEEEeEeeCCCCceEEEEEEeeECCCC-CEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEEEEE
Confidence 46889998865543222369999875421 11110 001 123222 23459999999999999999
Q ss_pred EeCC----eeeEEEeeee
Q psy10772 352 WLGN----TVLCTHNLTV 365 (378)
Q Consensus 352 ~~~~----~~l~~~~~~v 365 (378)
.... ......+|+|
T Consensus 80 ~v~~~~~g~~~~~~~l~V 97 (98)
T cd05718 80 EFATFPQGNRQKVTTLTV 97 (98)
T ss_pred EEEeCCCCcEEEEEEEEe
Confidence 8653 4555556655
No 128
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=97.43 E-value=0.00055 Score=58.10 Aligned_cols=81 Identities=22% Similarity=0.295 Sum_probs=50.6
Q ss_pred CCeeeeeeeeccCCCCC--------CCCeEEEEeccc---C-cee-eE-eecc---------CcceEe-------ecCce
Q psy10772 287 GQSVHLSCFVKLPASMA--------NQPMSWYHYSKD---K-GRY-QI-KFRS---------DKFIRT-------VDGGL 336 (378)
Q Consensus 287 G~s~~L~C~~r~~~~La--------~~~v~W~~~~~~---~-~~~-~l-~~~~---------~~~~~~-------~~~GL 336 (378)
|.++.|+|.-+..+.|+ ...|.|..-... + .++ .+ .+.. .+|... .+-.|
T Consensus 2 ~g~v~LPC~f~~~p~~p~~~~~~~~~~rIkW~~~~~~~~g~~~~e~~Vlv~~~g~~~~~~~y~gRv~l~~~~~~~g~asL 81 (117)
T cd05901 2 SGSVVLPCRFSTLPTLPPSVITTSEFLRIKWTKIEVDKNGKDHKETTVLVAQNGIIKIGQEYMGRVSVPSHPEDQGDASL 81 (117)
T ss_pred CCCEEEeeEEEecCCCCCcccCCCCCcEEEEEEecccccccCCCccEEEEEECCEEEECCcccCcEEeeccCCcCCceEE
Confidence 67899999998655443 247999775100 0 000 11 1111 113222 24559
Q ss_pred EEeeecCCCCeEEEEEeCC---eeeEEEeeeecc
Q psy10772 337 VIMAVEELDAGKYDCWLGN---TVLCTHNLTVDA 367 (378)
Q Consensus 337 lI~~v~~~DsG~Y~C~~~~---~~l~~~~~~v~~ 367 (378)
.|.+|+.+|+|.|.|.-.. +......|+|..
T Consensus 82 ~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~G 115 (117)
T cd05901 82 TIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVSG 115 (117)
T ss_pred EEcccccccCEEEEEEEEECCcccEEEEEEEEEE
Confidence 9999999999999998664 677777777754
No 129
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=97.39 E-value=0.0013 Score=55.28 Aligned_cols=81 Identities=21% Similarity=0.372 Sum_probs=48.2
Q ss_pred eCCeeeeeeeeccCCC---------CCCCCeEEEEecccCcee-------eEee--ccCcceEe-------ecCceEEee
Q psy10772 286 WGQSVHLSCFVKLPAS---------MANQPMSWYHYSKDKGRY-------QIKF--RSDKFIRT-------VDGGLVIMA 340 (378)
Q Consensus 286 ~G~s~~L~C~~r~~~~---------La~~~v~W~~~~~~~~~~-------~l~~--~~~~~~~~-------~~~GLlI~~ 340 (378)
.|+++.|+|.-....+ +..+.|.|+.+...+... ++++ +-.+|+.. .+-.|.|.+
T Consensus 1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n 80 (112)
T cd05900 1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE 80 (112)
T ss_pred CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence 3899999998764321 113589998763210000 1111 11123322 345699999
Q ss_pred ecCCCCeEEEEEeCC---eeeEEEeeeec
Q psy10772 341 VEELDAGKYDCWLGN---TVLCTHNLTVD 366 (378)
Q Consensus 341 v~~~DsG~Y~C~~~~---~~l~~~~~~v~ 366 (378)
|+.+|+|+|.|.... +.-..-.|.|+
T Consensus 81 l~~sDsG~Y~C~V~~g~~~~~~~v~l~v~ 109 (112)
T cd05900 81 LRSNDSGTYRCEVMHGIEDNYDTVEVQVK 109 (112)
T ss_pred cccccCEEEEEEEecCCCCceeEEEEEEE
Confidence 999999999999864 34444445444
No 130
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=97.39 E-value=0.00092 Score=55.73 Aligned_cols=82 Identities=24% Similarity=0.347 Sum_probs=49.6
Q ss_pred eCCeeeeeeeeccCCC-------CCCCCeEEEEecccCcee-------eEee--ccCcceEe-------ecCceEEeeec
Q psy10772 286 WGQSVHLSCFVKLPAS-------MANQPMSWYHYSKDKGRY-------QIKF--RSDKFIRT-------VDGGLVIMAVE 342 (378)
Q Consensus 286 ~G~s~~L~C~~r~~~~-------La~~~v~W~~~~~~~~~~-------~l~~--~~~~~~~~-------~~~GLlI~~v~ 342 (378)
.|+++.|+|....+.. +....|.|+.+....... ++.. .-.+|+.. ..-.|.|.+|+
T Consensus 1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~ 80 (110)
T cd05878 1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR 80 (110)
T ss_pred CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence 3899999998865442 223479999873221111 0100 01124332 12239999999
Q ss_pred CCCCeEEEEEeCC---eeeEEEeeeecc
Q psy10772 343 ELDAGKYDCWLGN---TVLCTHNLTVDA 367 (378)
Q Consensus 343 ~~DsG~Y~C~~~~---~~l~~~~~~v~~ 367 (378)
.+|+|.|.|.... ..-....|+|.+
T Consensus 81 ~sD~G~Y~C~v~~~~~~~~~~v~l~V~g 108 (110)
T cd05878 81 SSDSGVYRCEVMHGIEDEQDTVPLEVTG 108 (110)
T ss_pred hhhCEEEEEEEEeCCCcceEEEEEEEEE
Confidence 9999999999863 445566666643
No 131
>PHA02785 IL-beta-binding protein; Provisional
Probab=97.39 E-value=0.00034 Score=69.28 Aligned_cols=87 Identities=20% Similarity=0.208 Sum_probs=59.3
Q ss_pred CCccccc-ccceeEEEEeCCeeeeeeee-----ccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecC
Q psy10772 270 DSICESS-VGRLKQTVTWGQSVHLSCFV-----KLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEE 343 (378)
Q Consensus 270 ~~~C~~~-~~~k~~~~~~G~s~~L~C~~-----r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~ 343 (378)
+..|..- ...|...+.+|..+.|.|.+ .+.+ .++|+|+.++.+..+ .+. ...+.+|+|.++..
T Consensus 23 ~~~c~~~~~~~~~~~~~~ge~~~l~C~~~~~~~~g~p---~~~i~W~K~g~~~~~-~~~-------~~~g~~l~i~~~~~ 91 (326)
T PHA02785 23 APECIDKGQYFASFMELENEPVILPCPQINTLSSGYN---ILDILWEKRGADNDR-IIP-------IDNGSNMLILNPTQ 91 (326)
T ss_pred ccCchhcccccchhhhhcCCCEEEECCCccccccCCC---CceEEEEECCCccce-EEE-------ccCCceEEEcccCc
Confidence 4568643 34677788899999999985 2222 357999998643111 111 11234699999999
Q ss_pred CCCeEEEEEeCCee---eEEEeeeecc
Q psy10772 344 LDAGKYDCWLGNTV---LCTHNLTVDA 367 (378)
Q Consensus 344 ~DsG~Y~C~~~~~~---l~~~~~~v~~ 367 (378)
+|+|.|.|.+.|.. -++-+|+|..
T Consensus 92 ~DsG~Y~C~a~N~~g~~~~s~~L~V~~ 118 (326)
T PHA02785 92 SDSGIYICITKNETYCDMMSLNLTIVS 118 (326)
T ss_pred ccCeEEEEEEECCCcceEEEEEEEEEe
Confidence 99999999999854 4556666644
No 132
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=97.24 E-value=0.00084 Score=63.31 Aligned_cols=92 Identities=22% Similarity=0.265 Sum_probs=58.4
Q ss_pred Cccccc-ccceeEEEEeCCeeeeeeeeccCC-C-------CCCCCeEEEEecccCceeeEeeccC----------cceEe
Q psy10772 271 SICESS-VGRLKQTVTWGQSVHLSCFVKLPA-S-------MANQPMSWYHYSKDKGRYQIKFRSD----------KFIRT 331 (378)
Q Consensus 271 ~~C~~~-~~~k~~~~~~G~s~~L~C~~r~~~-~-------La~~~v~W~~~~~~~~~~~l~~~~~----------~~~~~ 331 (378)
..|... ...+.+.+.+|+++.|+|.+...+ . ...++|.|+..+.. . + +.. ++ .++..
T Consensus 20 ~~c~~~~~~~~~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~-~-~-v~~-~~~~~~~~~i~~~~~~~ 95 (227)
T PHA02826 20 LYCKYRGGDLTPVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSL-A-F-VRD-SGARTKIKKITHNEIGD 95 (227)
T ss_pred ccchhhCcCcceEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeE-E-E-EEc-CCCccccccccccceec
Confidence 447532 346888999999999999964211 0 23458999886432 0 0 110 01 11111
Q ss_pred ecCceEEeeecCCCCeEEEEEeCCee---eEEEeeeec
Q psy10772 332 VDGGLVIMAVEELDAGKYDCWLGNTV---LCTHNLTVD 366 (378)
Q Consensus 332 ~~~GLlI~~v~~~DsG~Y~C~~~~~~---l~~~~~~v~ 366 (378)
-+..|.|.+++.+|+|.|.|.+.|.. -++-.|+|.
T Consensus 96 r~~~L~I~~v~~~DsG~Y~C~a~N~~~~~~~~i~L~V~ 133 (227)
T PHA02826 96 RSENLWIGNVINIDEGIYICTISSGNICEESTIRLTFD 133 (227)
T ss_pred CCCeEEECCCChHHCEEEEEEEEECCcceEEEEEEEEe
Confidence 24579999999999999999999844 344556664
No 133
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=97.23 E-value=0.0024 Score=51.51 Aligned_cols=69 Identities=17% Similarity=0.316 Sum_probs=39.8
Q ss_pred CCeeeeeeeeccCCCCCCCCeEEEEecccCcee------eEe--e--ccCcceEee----cC---ceEEeeecCCCCeEE
Q psy10772 287 GQSVHLSCFVKLPASMANQPMSWYHYSKDKGRY------QIK--F--RSDKFIRTV----DG---GLVIMAVEELDAGKY 349 (378)
Q Consensus 287 G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~------~l~--~--~~~~~~~~~----~~---GLlI~~v~~~DsG~Y 349 (378)
|+++.|+|.-..........|.|+......-.+ ... . .-.+|+... .+ .|.|.+|+.+|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y 80 (100)
T cd05713 1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLY 80 (100)
T ss_pred CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEEE
Confidence 788999998753322222357886543210000 000 0 011243321 12 399999999999999
Q ss_pred EEEeCC
Q psy10772 350 DCWLGN 355 (378)
Q Consensus 350 ~C~~~~ 355 (378)
.|...+
T Consensus 81 ~C~v~~ 86 (100)
T cd05713 81 TCFFQS 86 (100)
T ss_pred EEEEec
Confidence 999985
No 134
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=97.23 E-value=0.0013 Score=52.12 Aligned_cols=72 Identities=17% Similarity=0.248 Sum_probs=46.0
Q ss_pred eeeeeeeccCCCCCCCCeEEEEecccCceeeEee-ccCcceEeecCceEEeeecCCCCeEEEEEeCC------eeeEEEe
Q psy10772 290 VHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF-RSDKFIRTVDGGLVIMAVEELDAGKYDCWLGN------TVLCTHN 362 (378)
Q Consensus 290 ~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~-~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~------~~l~~~~ 362 (378)
+.|.|..+ .+-|.|.++|+.++.+-.. ... ...........-|.|......|.|.|.|.+.| ....+|.
T Consensus 2 ~~L~C~s~--~skP~a~i~W~k~~~~l~~--~~~~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~~~~~~~~~ 77 (80)
T cd05885 2 VELTCLSP--RSKPAATLRWYRDRKELKG--VISQQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALVSQKKQTQYS 77 (80)
T ss_pred EEEEEeCC--CccCCCeEEEEECCEECCC--CcccccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhCCCCeeEEEE
Confidence 56899874 3445578999998875111 000 11222233333488888888889999999998 3455666
Q ss_pred eee
Q psy10772 363 LTV 365 (378)
Q Consensus 363 ~~v 365 (378)
|+|
T Consensus 78 l~V 80 (80)
T cd05885 78 LDV 80 (80)
T ss_pred EeC
Confidence 654
No 135
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=97.13 E-value=0.0016 Score=54.24 Aligned_cols=75 Identities=21% Similarity=0.241 Sum_probs=48.9
Q ss_pred ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEee-------ccCcceEee---cC---ceEEeeecCCC
Q psy10772 279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF-------RSDKFIRTV---DG---GLVIMAVEELD 345 (378)
Q Consensus 279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~-------~~~~~~~~~---~~---GLlI~~v~~~D 345 (378)
.+.+.+..|+++.|+|..+... ....+.|+.+.......-|.. ..++|+... .+ -|.|.+++.+|
T Consensus 6 ~~~v~~~~G~~v~L~C~~~~~~--~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~D 83 (116)
T cd07706 6 QPDVSVQVGEEVTLNCRYETSW--TNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLED 83 (116)
T ss_pred CCceEEcCCCCEEEEEEEeCCC--CceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHHH
Confidence 3567888999999999876432 123689988753322111110 113454443 12 39999999999
Q ss_pred CeEEEEEeCC
Q psy10772 346 AGKYDCWLGN 355 (378)
Q Consensus 346 sG~Y~C~~~~ 355 (378)
+|.|.|....
T Consensus 84 sg~Y~C~~~~ 93 (116)
T cd07706 84 SAKYFCALST 93 (116)
T ss_pred CEEEEEEEEC
Confidence 9999999874
No 136
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=97.11 E-value=0.0031 Score=51.50 Aligned_cols=67 Identities=21% Similarity=0.396 Sum_probs=39.7
Q ss_pred eeeeeeeeccCCCCCCCCeEEEEecccCceeeEe---ec--------cCcceEee------cCceEEeeecCCCCeEEEE
Q psy10772 289 SVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIK---FR--------SDKFIRTV------DGGLVIMAVEELDAGKYDC 351 (378)
Q Consensus 289 s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~---~~--------~~~~~~~~------~~GLlI~~v~~~DsG~Y~C 351 (378)
++.|+|.-....+.....|.|+.+........+. .. -.+|.... +..|.|.+|+.+|+|+|.|
T Consensus 2 ~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~C 81 (100)
T cd05888 2 DTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQADEGKYKC 81 (100)
T ss_pred CEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCccccceEEEE
Confidence 6789998754332222378998864321111111 00 01232222 3459999999999999999
Q ss_pred EeCC
Q psy10772 352 WLGN 355 (378)
Q Consensus 352 ~~~~ 355 (378)
...+
T Consensus 82 ~v~~ 85 (100)
T cd05888 82 RVIT 85 (100)
T ss_pred EEEe
Confidence 9654
No 137
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=97.08 E-value=0.0018 Score=54.33 Aligned_cols=81 Identities=21% Similarity=0.298 Sum_probs=49.7
Q ss_pred CCeeeeeeeeccCCCC----CCCCeEEEEeccc------------CceeeEeeccCcceEe-------ecCceEEeeecC
Q psy10772 287 GQSVHLSCFVKLPASM----ANQPMSWYHYSKD------------KGRYQIKFRSDKFIRT-------VDGGLVIMAVEE 343 (378)
Q Consensus 287 G~s~~L~C~~r~~~~L----a~~~v~W~~~~~~------------~~~~~l~~~~~~~~~~-------~~~GLlI~~v~~ 343 (378)
|.++.|+|.-+.+++. ..+.|.|.+.... .+...+..+-.+|+.. .+-.|.|.+|+.
T Consensus 2 ~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~~ 81 (110)
T cd05902 2 SSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLRY 81 (110)
T ss_pred CCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCCH
Confidence 7889999995544331 2468999876321 1110111011223333 233599999999
Q ss_pred CCCeEEEEEeCC---eeeEEEeeeecc
Q psy10772 344 LDAGKYDCWLGN---TVLCTHNLTVDA 367 (378)
Q Consensus 344 ~DsG~Y~C~~~~---~~l~~~~~~v~~ 367 (378)
+|+|.|.|.-.. ..-+...|+|..
T Consensus 82 ~D~G~Y~C~v~~g~~~~~~~v~L~V~g 108 (110)
T cd05902 82 SDSGTYRCEVVLGINDEQDTVPLEVTG 108 (110)
T ss_pred HHCEEEEEEEEECCcccEEEEEEEEEE
Confidence 999999998764 556667777653
No 138
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=97.06 E-value=0.002 Score=53.07 Aligned_cols=71 Identities=21% Similarity=0.275 Sum_probs=44.3
Q ss_pred EEEEeCCeeeeeeeeccCCCCCCCCeEEEEeccc---CceeeE-ee----------cc-CcceEe--ecCc----eEEee
Q psy10772 282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKD---KGRYQI-KF----------RS-DKFIRT--VDGG----LVIMA 340 (378)
Q Consensus 282 ~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~---~~~~~l-~~----------~~-~~~~~~--~~~G----LlI~~ 340 (378)
+++.+|+++.|.|..+.... ...+.|+.+... .+..-| .. +. .+++.. ...+ |-|.+
T Consensus 1 ~~v~~G~~vtL~C~~~~~~~--~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~ 78 (107)
T cd07700 1 ILVQTNNTVKLSCEAKGISE--NTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINR 78 (107)
T ss_pred CEEcCCCCEEEEEEEecCCC--CCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECC
Confidence 35778999999998754221 126899988543 111001 00 00 234332 2222 99999
Q ss_pred ecCCCCeEEEEEeC
Q psy10772 341 VEELDAGKYDCWLG 354 (378)
Q Consensus 341 v~~~DsG~Y~C~~~ 354 (378)
++.+|+|.|.|...
T Consensus 79 ~~~~Dsg~YyCa~~ 92 (107)
T cd07700 79 VKPEDSGTYFCMTV 92 (107)
T ss_pred CCHHHCEEEEEeEc
Confidence 99999999999975
No 139
>KOG4221|consensus
Probab=97.06 E-value=0.0033 Score=70.36 Aligned_cols=99 Identities=19% Similarity=0.287 Sum_probs=68.8
Q ss_pred CCeEEEEEEECCCeeEEE--EeceeeeeccCCCCCcccccccceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccC
Q psy10772 239 TSEYIVYFAATTTLRTVF--VKVRLLQDVSNTSDSICESSVGRLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDK 316 (378)
Q Consensus 239 ~~~ytV~flGT~~G~v~~--V~~~~lqd~~~~~~~~C~~~~~~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~ 316 (378)
++.|.|+-=+++-|.|+- +...+.+.+ ..-. -.-..++..|+++.+.|++-. .+-|.++|++|..+
T Consensus 113 eg~Yqc~atv~~~gsi~Sr~a~v~~a~~~-----~f~~---~~~~~t~~~g~ta~f~c~vn~---e~~p~i~w~kn~~p- 180 (1381)
T KOG4221|consen 113 EGVYQCLATVEDVGSILSRTAKVALAGLA-----DFAL---QPESTTLLYGQTALFSCEVNA---EPVPTIMWLKNDQP- 180 (1381)
T ss_pred CceEEEEEEccccceeecceEEEEecccC-----cccc---CccceeEecCCcEEEEEEEcC---ccCceeEEeccccc-
Confidence 588998877778888871 111222222 1000 122457888999999999854 33357999998765
Q ss_pred ceeeEeeccCcceEeecCc-eEEeeecCCCCeEEEEEeCC
Q psy10772 317 GRYQIKFRSDKFIRTVDGG-LVIMAVEELDAGKYDCWLGN 355 (378)
Q Consensus 317 ~~~~l~~~~~~~~~~~~~G-LlI~~v~~~DsG~Y~C~~~~ 355 (378)
|. .++|+++.-+| |+|.+++..|.|.|.|...+
T Consensus 181 ----l~--~~~r~i~lpsG~L~I~~~qp~d~g~yrc~vt~ 214 (1381)
T KOG4221|consen 181 ----LP--LDSRVIVLPSGALEISGLQPSDTGEYRCVVTG 214 (1381)
T ss_pred ----cc--CCCcEEEcCCCcEEecccccCCCceEEEEEec
Confidence 43 44577777666 99999999999999999987
No 140
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=97.06 E-value=0.0017 Score=59.09 Aligned_cols=89 Identities=21% Similarity=0.247 Sum_probs=57.9
Q ss_pred ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCcee---eEeecc--CcceEe-----ecCceEEeeecCCCCeE
Q psy10772 279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRY---QIKFRS--DKFIRT-----VDGGLVIMAVEELDAGK 348 (378)
Q Consensus 279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~---~l~~~~--~~~~~~-----~~~GLlI~~v~~~DsG~ 348 (378)
...+.|.+|+++.|.|.-+.+.. .+.|+|+.+.+.-.-| ...+.+ .+|+.. .+.+|.|.+|+.+|+|+
T Consensus 22 ~~~v~V~ege~VtLsCs~t~s~~--~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGc 99 (189)
T PHA02987 22 FVKITVSEHVNVKISCNKTSSFN--SILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGC 99 (189)
T ss_pred eEEEEEcCCCCEEEEEecCCCCc--cceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeE
Confidence 46788999999999999753433 2479998874321001 111111 124443 56789999999999999
Q ss_pred EEEEeCC-----eeeEEEeeeecccc
Q psy10772 349 YDCWLGN-----TVLCTHNLTVDAHS 369 (378)
Q Consensus 349 Y~C~~~~-----~~l~~~~~~v~~~~ 369 (378)
|.|.-+- ..-+.=+|+|.+.+
T Consensus 100 Y~C~F~tfp~G~~~~gt~CLtVt~~~ 125 (189)
T PHA02987 100 YTCIFNTLLSKNNEKGVVCLNVTTDS 125 (189)
T ss_pred EEEEEEecCCCCCceeEEEEEEEchh
Confidence 9998762 34445556665544
No 141
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=97.04 E-value=0.0022 Score=51.69 Aligned_cols=72 Identities=19% Similarity=0.256 Sum_probs=45.7
Q ss_pred EEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEe------eccCcceEeec---C---ceEEeeecCCCCeEE
Q psy10772 282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIK------FRSDKFIRTVD---G---GLVIMAVEELDAGKY 349 (378)
Q Consensus 282 ~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~------~~~~~~~~~~~---~---GLlI~~v~~~DsG~Y 349 (378)
+.+.+|+++.|+|..... .....+.|+.+.......-|. ....+|+.... . -|.|.+|+.+|+|.|
T Consensus 2 v~~~~G~~vtl~C~~~~~--~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y 79 (98)
T cd05716 2 VTGELGGSVTIPCPYPPK--NRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWY 79 (98)
T ss_pred EEEEeCCeEEEEeeCCCC--CCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEE
Confidence 578899999999987532 122368998775432111110 01123333321 1 399999999999999
Q ss_pred EEEeCC
Q psy10772 350 DCWLGN 355 (378)
Q Consensus 350 ~C~~~~ 355 (378)
.|....
T Consensus 80 ~C~~~~ 85 (98)
T cd05716 80 WCGVGD 85 (98)
T ss_pred EEEccc
Confidence 998875
No 142
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=97.03 E-value=0.002 Score=52.96 Aligned_cols=70 Identities=20% Similarity=0.274 Sum_probs=44.7
Q ss_pred EEEeCCeeeeeeeeccCCCCCCCCeEEEEeccc--CceeeEe-ec------------cCcceEeecC----ceEEeeecC
Q psy10772 283 TVTWGQSVHLSCFVKLPASMANQPMSWYHYSKD--KGRYQIK-FR------------SDKFIRTVDG----GLVIMAVEE 343 (378)
Q Consensus 283 ~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~--~~~~~l~-~~------------~~~~~~~~~~----GLlI~~v~~ 343 (378)
.+.+|+++.|.|.+..... ..+.|+.+... .+..-|- .. ...|+..... -|.|.+++.
T Consensus 2 ~v~~G~~vtL~C~~~~~~~---~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~ 78 (104)
T cd05720 2 DAELGQKVELKCEVLNSSP---TGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQK 78 (104)
T ss_pred cccCCCeEEEEEEecCCCC---CcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCH
Confidence 3567999999998753322 36899998643 2221111 00 0223332221 299999999
Q ss_pred CCCeEEEEEeCC
Q psy10772 344 LDAGKYDCWLGN 355 (378)
Q Consensus 344 ~DsG~Y~C~~~~ 355 (378)
+|+|.|.|....
T Consensus 79 sDsgtY~Ca~~~ 90 (104)
T cd05720 79 ENEGYYFCSVAS 90 (104)
T ss_pred HHCEEEEEEEcc
Confidence 999999998763
No 143
>KOG4222|consensus
Probab=97.02 E-value=0.00092 Score=74.18 Aligned_cols=71 Identities=23% Similarity=0.365 Sum_probs=56.3
Q ss_pred cceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeecc-CcceEeecCceEEeeecCCCCeEEEEEeCC
Q psy10772 278 GRLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRS-DKFIRTVDGGLVIMAVEELDAGKYDCWLGN 355 (378)
Q Consensus 278 ~~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~-~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~ 355 (378)
..|.+.+..|+.+.|+|-+ |.-.+.|.|.|.-.+++ |.... ..+.++.+.-|+|.+|.++|+|.|.|.++|
T Consensus 137 ~prd~~~a~ge~avlEcgp--P~ghpeptvSw~Kdg~p-----l~~~~~~~~~lisgG~LlIsnvrksD~GtY~CVatN 208 (1281)
T KOG4222|consen 137 SPRDVQAAVGEEAVLECGP--PRGHPEPTVSWVKDGKP-----LDHYDVPIIALISGGNLLISNVRKSDEGTYACVATN 208 (1281)
T ss_pred CcccccccccceeEEeccC--CCCCCCCcceeecCCCc-----cccccceeEEEecCCcEEEeccccCCCceeeeeecc
Confidence 3456778889999999998 88888899999877765 32212 224556666699999999999999999997
No 144
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=96.93 E-value=0.00093 Score=53.52 Aligned_cols=65 Identities=18% Similarity=0.318 Sum_probs=41.8
Q ss_pred EEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCCe
Q psy10772 282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGNT 356 (378)
Q Consensus 282 ~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~~ 356 (378)
..+.+|+++.|.|....+ .....|+.++.... .+. ... .....-+.|.+|+.+|+|.|.|...+.
T Consensus 11 ~vV~~G~~VtL~C~~~~~----~~~f~l~k~g~~~~---~~~-~~~--~~~~~~f~i~~v~~~~~G~Y~C~~~~~ 75 (91)
T cd05751 11 SVVPLGKPVTLRCQGPYG----AVEYRLYREGSTFA---VKK-PPE--PQNKAKFFIPSMKREHAGRYRCYYRSG 75 (91)
T ss_pred CccCCCCcEEEEEecCCC----CCEEEEEECCCCcc---ccc-cCC--CceeEEEEccCCChhHCEEEEEEEECC
Confidence 356789999999987533 22456665554311 110 110 122344889999999999999998764
No 145
>KOG4194|consensus
Probab=96.92 E-value=0.0017 Score=68.33 Aligned_cols=82 Identities=21% Similarity=0.266 Sum_probs=60.7
Q ss_pred eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcc--eEeecCceEEeeecCCCCeEEEEEeCC--
Q psy10772 280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKF--IRTVDGGLVIMAVEELDAGKYDCWLGN-- 355 (378)
Q Consensus 280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~--~~~~~~GLlI~~v~~~DsG~Y~C~~~~-- 355 (378)
.+++..-|+-+.|+|...+.|+ |.|.|...+.++ ..+-.+.| +...++-..|.+|..+|+|.|.|.+.|
T Consensus 620 ~dltl~tg~mArl~CaAtG~P~---PeIawqkdggtd----FPAA~eRRl~Vmpedd~f~Itnvk~eD~GiYtC~A~n~A 692 (873)
T KOG4194|consen 620 EDLTLRTGQMARLECAATGHPR---PEIAWQKDGGTD----FPAARERRLHVMPEDDVFFITNVKIEDQGIYTCTAQNVA 692 (873)
T ss_pred ccceeecccceeeeeeccCCCC---cceeehhcCCCC----CchhhhheeeecCCCCEEEEecccccccceeEEeeeccc
Confidence 4566677999999999988877 789997765431 11112223 233467789999999999999999998
Q ss_pred -eeeEEEeeeeccc
Q psy10772 356 -TVLCTHNLTVDAH 368 (378)
Q Consensus 356 -~~l~~~~~~v~~~ 368 (378)
+.-+.=.|+|.+.
T Consensus 693 G~isanAtL~V~e~ 706 (873)
T KOG4194|consen 693 GQISANATLTVLET 706 (873)
T ss_pred cceeeceEEEEecC
Confidence 7777777777664
No 146
>smart00406 IGv Immunoglobulin V-Type.
Probab=96.89 E-value=0.0028 Score=48.23 Aligned_cols=63 Identities=24% Similarity=0.300 Sum_probs=38.2
Q ss_pred eeeeeeeeccCCCCCCCCeEEEEecccCceeeEee-----------ccCcceEeecC---c---eEEeeecCCCCeEEEE
Q psy10772 289 SVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF-----------RSDKFIRTVDG---G---LVIMAVEELDAGKYDC 351 (378)
Q Consensus 289 s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~-----------~~~~~~~~~~~---G---LlI~~v~~~DsG~Y~C 351 (378)
++.|+|....... +...|.|+.+.......-|.. ...+|+..+.. + |.|.+++.+|+|.|.|
T Consensus 1 ~v~l~C~~~~~~~-~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C 79 (81)
T smart00406 1 SVTLSCKASGFTF-SSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTGTYYC 79 (81)
T ss_pred CEEEEEEEecccc-ceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEEE
Confidence 3679998764332 112689988764222111111 12345554443 2 8899999999999999
Q ss_pred E
Q psy10772 352 W 352 (378)
Q Consensus 352 ~ 352 (378)
.
T Consensus 80 ~ 80 (81)
T smart00406 80 A 80 (81)
T ss_pred c
Confidence 5
No 147
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=96.88 E-value=0.0055 Score=47.68 Aligned_cols=64 Identities=16% Similarity=0.265 Sum_probs=34.7
Q ss_pred eeeeeeeccCCCCCCCCeEEEEeccc--CceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCC
Q psy10772 290 VHLSCFVKLPASMANQPMSWYHYSKD--KGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGN 355 (378)
Q Consensus 290 ~~L~C~~r~~~~La~~~v~W~~~~~~--~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~ 355 (378)
+.|.|...+- -|.+.|+|+.++.+ .+.......++........=|.|......|.|.|.|.+.+
T Consensus 2 ~~L~C~v~g~--~P~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n 67 (82)
T cd05759 2 YNLTCRARGA--KPAAEIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARN 67 (82)
T ss_pred EEEEEEEeCc--cCCCEEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcC
Confidence 5799998652 22358999998754 1110000011111111122244555555678899999987
No 148
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=96.86 E-value=0.004 Score=52.34 Aligned_cols=76 Identities=20% Similarity=0.208 Sum_probs=46.9
Q ss_pred ceeEEEEeCCeeeeeeeeccCCCCC---CCCeEEEEecccCceeeEe----------eccCcceEee---cC---ceEEe
Q psy10772 279 RLKQTVTWGQSVHLSCFVKLPASMA---NQPMSWYHYSKDKGRYQIK----------FRSDKFIRTV---DG---GLVIM 339 (378)
Q Consensus 279 ~k~~~~~~G~s~~L~C~~r~~~~La---~~~v~W~~~~~~~~~~~l~----------~~~~~~~~~~---~~---GLlI~ 339 (378)
.+.+.+.+|+++.|+|.-..|.++. ...+.|+.+...+....+. .+-.+|+... .. .|.|.
T Consensus 6 P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I~ 85 (119)
T cd05712 6 PKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLIS 85 (119)
T ss_pred CCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEEc
Confidence 3457899999999999765554211 1258998874321000010 0111343331 22 39999
Q ss_pred eecCCCCeEEEEEeC
Q psy10772 340 AVEELDAGKYDCWLG 354 (378)
Q Consensus 340 ~v~~~DsG~Y~C~~~ 354 (378)
+++.+|+|.|.|...
T Consensus 86 ~l~~~Dsg~Y~C~~~ 100 (119)
T cd05712 86 DAQPEDSGKYFFRVE 100 (119)
T ss_pred cCChhhCeEEEEEEE
Confidence 999999999999874
No 149
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=96.84 E-value=0.001 Score=49.42 Aligned_cols=58 Identities=26% Similarity=0.413 Sum_probs=37.9
Q ss_pred eeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCC
Q psy10772 290 VHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGN 355 (378)
Q Consensus 290 ~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~ 355 (378)
+.|.|.....+. .+.++|+ ...+ . ... ..........-|.|.+++.+|.|.|.|.+.|
T Consensus 18 ~~l~C~~~~~~~--~~~~~W~-~~~~--~-~~~--~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N 75 (75)
T PF13927_consen 18 VTLTCSAEGGPP--PPSISWY-DSNP--S-FNS--NSRGSSSSNSTLTISNVTRSDNGTYTCIASN 75 (75)
T ss_dssp EEEEEEESSEES--SEEEEEE-TEEE--E-EEE--EEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred EEEEEEEccccC--CeEEEEE-ecCC--c-eee--eeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence 999999977653 3579998 1111 0 010 1111223455688889999999999999864
No 150
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=96.78 E-value=0.0074 Score=48.75 Aligned_cols=66 Identities=23% Similarity=0.379 Sum_probs=39.5
Q ss_pred CCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEe---------e--ccCcceEe-----ecCceEEeeecCCCCeEEE
Q psy10772 287 GQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIK---------F--RSDKFIRT-----VDGGLVIMAVEELDAGKYD 350 (378)
Q Consensus 287 G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~---------~--~~~~~~~~-----~~~GLlI~~v~~~DsG~Y~ 350 (378)
|+++.|+|........ -.|.|+..... ....|. . .-.+|+.. .+-.|.|.+|+.+|+|.|.
T Consensus 1 G~~vtL~C~~~~~~~~--~~v~W~k~~~~-~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~ 77 (97)
T cd05846 1 GGNVTLSCNLTLPEEV--LQVTWQKIQGS-SPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYK 77 (97)
T ss_pred CCcEEEEEEeCCCCee--EEEEEEEcCCC-CceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEE
Confidence 7899999986544331 15899764321 110110 0 01112222 2333999999999999999
Q ss_pred EEeCC
Q psy10772 351 CWLGN 355 (378)
Q Consensus 351 C~~~~ 355 (378)
|....
T Consensus 78 C~~~~ 82 (97)
T cd05846 78 CIFNT 82 (97)
T ss_pred EEEEe
Confidence 99764
No 151
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=96.72 E-value=0.01 Score=48.49 Aligned_cols=68 Identities=19% Similarity=0.328 Sum_probs=41.9
Q ss_pred CeeeeeeeeccCCCCCCCCeEEEEecccCceeeEe---------e--ccCcceEe-----ecCceEEeeecCCCCeEEEE
Q psy10772 288 QSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIK---------F--RSDKFIRT-----VDGGLVIMAVEELDAGKYDC 351 (378)
Q Consensus 288 ~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~---------~--~~~~~~~~-----~~~GLlI~~v~~~DsG~Y~C 351 (378)
.++.|+|.-+.+..+ ..|+|...... +...+- + .-.+|+.. .+-.|.|.+|+.+|+|+|.|
T Consensus 1 ~~vtL~C~~~~~~~~--~qV~W~k~~~~-~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~~D~G~Y~C 77 (96)
T cd05887 1 KNVTLKCRIQVNETI--TQSSWEKIHGK-GSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGFSDIGVYIC 77 (96)
T ss_pred CCEEEEEEecCCCcE--EEEEEEEcCCC-CcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCccccEEEEE
Confidence 367899998755443 37899765321 100010 0 01123332 36679999999999999999
Q ss_pred EeCCeee
Q psy10772 352 WLGNTVL 358 (378)
Q Consensus 352 ~~~~~~l 358 (378)
....-+.
T Consensus 78 ~v~tfP~ 84 (96)
T cd05887 78 KAVTFPL 84 (96)
T ss_pred EEEeCCC
Confidence 9765333
No 152
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=96.70 E-value=0.012 Score=48.59 Aligned_cols=83 Identities=16% Similarity=0.221 Sum_probs=53.7
Q ss_pred eeEEEEeCCeeeeeeeeccCCCCCCCC-eEEEEecccC---ceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCC
Q psy10772 280 LKQTVTWGQSVHLSCFVKLPASMANQP-MSWYHYSKDK---GRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGN 355 (378)
Q Consensus 280 k~~~~~~G~s~~L~C~~r~~~~La~~~-v~W~~~~~~~---~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~ 355 (378)
-.+.|..|.++.|.|.... -|+|. +.|...+..- ..+.+..+... -.....=|.+.+|..+|+|.|.|.+.|
T Consensus 11 ~~~~v~~gE~~~L~V~ieA---YP~p~~~~W~~~~~~l~~~~~~~~~~~~~~-~~rY~S~L~L~Rlk~~E~G~YTf~a~N 86 (101)
T cd05860 11 TTIFVNAGENLDLIVEYEA---YPKPEHQQWIYMNRTLTNTSDHYVKSRNES-NNRYVSELHLTRLKGTEGGTYTFLVSN 86 (101)
T ss_pred ceEEEECCCCEEEEEEEEe---CCCCeeeEEEcCCcccCccccceeEEeccC-ceEEEEEEEEeecChhhCcEEEEEEEC
Confidence 3567889999999999854 44455 8998775431 00011111100 011223588999999999999999998
Q ss_pred ---eeeEEEeeeec
Q psy10772 356 ---TVLCTHNLTVD 366 (378)
Q Consensus 356 ---~~l~~~~~~v~ 366 (378)
+.-.+++|+|.
T Consensus 87 ~~~~~s~tF~l~v~ 100 (101)
T cd05860 87 SDASASVTFNVYVN 100 (101)
T ss_pred CCCeEEEEEEEEEe
Confidence 55666666654
No 153
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=96.66 E-value=0.0054 Score=51.62 Aligned_cols=73 Identities=23% Similarity=0.259 Sum_probs=46.1
Q ss_pred eEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEe-e-----------ccCcceEee-cC-----ceEEeeec
Q psy10772 281 KQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIK-F-----------RSDKFIRTV-DG-----GLVIMAVE 342 (378)
Q Consensus 281 ~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~-~-----------~~~~~~~~~-~~-----GLlI~~v~ 342 (378)
.+.+.+|+++.|.|..+... .....+.|+.+...+...-|- . ...+|+... +. -|.|.+++
T Consensus 6 ~~~v~~G~~vtL~C~~~~~~-~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~ 84 (117)
T cd04981 6 PGLVKPGQSLKLSCKASGFT-FTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNSLT 84 (117)
T ss_pred CeEEcCCCCEEEEEEEeCCC-cccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECCCC
Confidence 35677899999999874322 112358999886543321110 0 012344432 11 28999999
Q ss_pred CCCCeEEEEEeC
Q psy10772 343 ELDAGKYDCWLG 354 (378)
Q Consensus 343 ~~DsG~Y~C~~~ 354 (378)
.+|+|.|.|-+.
T Consensus 85 ~~Dsa~YyCa~~ 96 (117)
T cd04981 85 PEDTAVYYCARG 96 (117)
T ss_pred HHHCEEEEEEEE
Confidence 999999999875
No 154
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=96.40 E-value=0.011 Score=48.41 Aligned_cols=71 Identities=18% Similarity=0.256 Sum_probs=42.1
Q ss_pred eeeeeeeeccCCCCCCCCeEEEEecccCce--------eeEee--ccCcceEe-----ecCceEEeeecCCCCeEEEEEe
Q psy10772 289 SVHLSCFVKLPASMANQPMSWYHYSKDKGR--------YQIKF--RSDKFIRT-----VDGGLVIMAVEELDAGKYDCWL 353 (378)
Q Consensus 289 s~~L~C~~r~~~~La~~~v~W~~~~~~~~~--------~~l~~--~~~~~~~~-----~~~GLlI~~v~~~DsG~Y~C~~ 353 (378)
.+.|+|.-.....+ ..|+|.+....... +...+ .-.+|+.. .+.+|.|.+|+.+|+|.|.|..
T Consensus 2 ~vtL~C~~~~~~~~--~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~nvt~~D~G~Y~C~~ 79 (96)
T cd05889 2 KMKLECVYPKTGVL--IQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNNATEEDVGLYCCSL 79 (96)
T ss_pred CEEEEeEcCCCCcE--EEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcCCCcccCEEEEEEE
Confidence 46789987543332 36889875431000 00111 01134332 3577999999999999999998
Q ss_pred CCeeeEEE
Q psy10772 354 GNTVLCTH 361 (378)
Q Consensus 354 ~~~~l~~~ 361 (378)
..-+..++
T Consensus 80 ~t~P~g~~ 87 (96)
T cd05889 80 VTYPQGSW 87 (96)
T ss_pred EeCCCCCe
Confidence 76444443
No 155
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=96.33 E-value=0.011 Score=47.82 Aligned_cols=65 Identities=18% Similarity=0.312 Sum_probs=40.5
Q ss_pred EEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEe
Q psy10772 282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWL 353 (378)
Q Consensus 282 ~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~ 353 (378)
..+.+|++|.|.|..... . -...|+.++.......+.-+...+ ..--+.|..++..|+|.|.|..
T Consensus 10 ~vV~~G~~VTL~C~~~~~-~---~~f~l~k~g~~~~~~~~~~~~~~~---~~a~f~I~~~~~~~~G~Y~C~~ 74 (94)
T cd05711 10 PVVPSGENVTLQCHSDIR-F---DRFILYKEGRSKPVLHLYEKHHGG---FQASFPLGPVTPAHAGTYRCYG 74 (94)
T ss_pred CccCCCCeEEEEEecCCC-C---CEEEEEECCCCCCceecccccCCe---EEEEEEecCCCcccCEEEEEEE
Confidence 456789999999976432 2 256787766543211110000111 1224689999999999999995
No 156
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=96.08 E-value=0.015 Score=40.74 Aligned_cols=64 Identities=25% Similarity=0.421 Sum_probs=40.4
Q ss_pred eeeeeeeccCCCCCCCCeEEEEecccCceeeEe-eccCcceEeecCceEEeeecCCCCeEEEEEeCCe
Q psy10772 290 VHLSCFVKLPASMANQPMSWYHYSKDKGRYQIK-FRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGNT 356 (378)
Q Consensus 290 ~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~-~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~~ 356 (378)
+.|.|....+ +.+.+.|+.++......... .............|.|.++...|+|.|.|.....
T Consensus 1 ~~l~C~~~~~---~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~ 65 (74)
T cd00096 1 VTLTCLASGP---PPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNS 65 (74)
T ss_pred CEEEEEecCC---CCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecC
Confidence 3688998652 23479999886542221110 0011222344556999999999999999998764
No 157
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=96.02 E-value=0.041 Score=45.15 Aligned_cols=23 Identities=30% Similarity=0.528 Sum_probs=21.0
Q ss_pred cCceEEeeecCCCCeEEEEEeCC
Q psy10772 333 DGGLVIMAVEELDAGKYDCWLGN 355 (378)
Q Consensus 333 ~~GLlI~~v~~~DsG~Y~C~~~~ 355 (378)
+-.|.|.+|+.+|.|+|.|...+
T Consensus 62 daSi~i~nl~~~D~G~Y~C~v~t 84 (99)
T cd05886 62 DGTISLSRLELEDEGVYICEFAT 84 (99)
T ss_pred cceEEEcCCccccCEEEEEEEEe
Confidence 36799999999999999999887
No 158
>PHA02633 hypothetical protein; Provisional
Probab=95.90 E-value=0.019 Score=43.06 Aligned_cols=35 Identities=20% Similarity=0.390 Sum_probs=29.0
Q ss_pred CceEEeeecCCCCeEEEEEeCCeeeE---EEeeeeccc
Q psy10772 334 GGLVIMAVEELDAGKYDCWLGNTVLC---THNLTVDAH 368 (378)
Q Consensus 334 ~GLlI~~v~~~DsG~Y~C~~~~~~l~---~~~~~v~~~ 368 (378)
.-|.|.++..+|+|.|.|.-.|..+| +.+|+|...
T Consensus 18 ~nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~~ 55 (63)
T PHA02633 18 NNMLILNPTQSDSGIYMCITKNETYSDMMKFDLCICLR 55 (63)
T ss_pred ccEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEeec
Confidence 34999999999999999999986655 677877654
No 159
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=95.84 E-value=0.045 Score=44.04 Aligned_cols=74 Identities=14% Similarity=0.212 Sum_probs=48.9
Q ss_pred EEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeC---CeeeE
Q psy10772 283 TVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLG---NTVLC 359 (378)
Q Consensus 283 ~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~---~~~l~ 359 (378)
.+..|+++.|.|...+.+. |.+.|+|.-.+.. ..+++. ....-|.+.+|..+|+|...|.-. ...-+
T Consensus 10 ~lL~G~sLtLtl~~~s~s~-p~~~i~w~~P~n~-~~~~~~--------~~~ktL~~~qv~~qdSG~WtC~V~~~~k~~~~ 79 (88)
T cd07694 10 HVLSGTNLTLTLHGSSNSL-PAFKVEWRGPGNK-SKQILN--------QDKKTLNLVQLGPNDSGTWDCIVSVNSSEKTL 79 (88)
T ss_pred eeecCCcEEEEEecCCCCC-CCccEEEeCCCCc-cceecc--------CCccEEEeceeCcccCCEEEEEEEECceEEEE
Confidence 5678999999999743322 2348999754432 111110 234568899999999999999874 25556
Q ss_pred EEeeeec
Q psy10772 360 THNLTVD 366 (378)
Q Consensus 360 ~~~~~v~ 366 (378)
..+|.|-
T Consensus 80 ~~~V~Vl 86 (88)
T cd07694 80 KLDIKVL 86 (88)
T ss_pred EeeEEEE
Confidence 6666664
No 160
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=95.67 E-value=0.045 Score=41.60 Aligned_cols=54 Identities=17% Similarity=0.325 Sum_probs=37.0
Q ss_pred EEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCCee
Q psy10772 284 VTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGNTV 357 (378)
Q Consensus 284 ~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~~~ 357 (378)
-++|.+|.|.|... + ..+.|..|... +. + .+..+++.+-. +++|.|.|.+.+..
T Consensus 4 sisGTtVtlTCP~~-----~-~~i~W~~n~~~-----~~---g-----~~~~~~~~~~~-e~~G~Y~C~~~~~~ 57 (65)
T cd07692 4 SISGTTVTVTCPLS-----G-DDIKWKKNDQV-----SQ---G-----SDEKYLSLNHF-SSSGYYHCTADNAN 57 (65)
T ss_pred EEeccEEEEECCCC-----C-CCceEEeCCcc-----CC---C-----CCceEEeeccC-CCCceEEEEeCCCc
Confidence 46799999999642 1 24899988642 21 1 23445565655 88999999998754
No 161
>PHA03376 BARF1; Provisional
Probab=94.97 E-value=0.088 Score=48.30 Aligned_cols=75 Identities=19% Similarity=0.266 Sum_probs=46.2
Q ss_pred eEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecc--c------CceeeEeeccCc--ceEe-ecCc---eEEeeecCCCC
Q psy10772 281 KQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSK--D------KGRYQIKFRSDK--FIRT-VDGG---LVIMAVEELDA 346 (378)
Q Consensus 281 ~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~--~------~~~~~l~~~~~~--~~~~-~~~G---LlI~~v~~~Ds 346 (378)
.+++..|.++.|+|.-+.-+.-+.-.|+|+-.+. + .+...+-.+=+. +... .+.| |+|.+++.+|.
T Consensus 20 pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDd 99 (221)
T PHA03376 20 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD 99 (221)
T ss_pred chhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCC
Confidence 6777889999999998622222444789976322 1 111111111111 2211 1123 99999999999
Q ss_pred eEEEEEeCC
Q psy10772 347 GKYDCWLGN 355 (378)
Q Consensus 347 G~Y~C~~~~ 355 (378)
|.|.|....
T Consensus 100 GtY~C~fQk 108 (221)
T PHA03376 100 GNYLCRMKL 108 (221)
T ss_pred ceEEEEEEc
Confidence 999999886
No 162
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=94.30 E-value=0.3 Score=38.12 Aligned_cols=73 Identities=18% Similarity=0.251 Sum_probs=38.6
Q ss_pred eeeeeeeccCCCCCCCCeEEEEecccCceeeEe-eccCcceEeecCceEEeeecCCC-CeEEEEEeCCee------eEEE
Q psy10772 290 VHLSCFVKLPASMANQPMSWYHYSKDKGRYQIK-FRSDKFIRTVDGGLVIMAVEELD-AGKYDCWLGNTV------LCTH 361 (378)
Q Consensus 290 ~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~-~~~~~~~~~~~~GLlI~~v~~~D-sG~Y~C~~~~~~------l~~~ 361 (378)
+.|.|....- -|.+.|+|+.++.+-...... ..+++.-... ...|...++..| .+.|.|.+.+.. ..++
T Consensus 2 ~~L~C~~~~~--~P~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~-~s~l~~~~~~~d~g~~~~C~v~h~~l~~~~~~~~~ 78 (82)
T cd05761 2 VELTCTSSGS--KPAATIRWFKGDKELKGVKLKEEDENGKTFTV-TSSLRFQVDREDDGAPIICRVDHPALKSTDKQTQQ 78 (82)
T ss_pred EEEEEEecCc--CcCCeEEEEECCEEccCceeeEecCCCCEEEE-EEEEEEEcchhhCCCEEEEEEeChhcCCCCceeEE
Confidence 4689988542 223589999987641100000 0111111111 223444555555 569999999843 3677
Q ss_pred eeee
Q psy10772 362 NLTV 365 (378)
Q Consensus 362 ~~~v 365 (378)
.|+|
T Consensus 79 ~~~~ 82 (82)
T cd05761 79 VLEV 82 (82)
T ss_pred EEeC
Confidence 7654
No 163
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=93.97 E-value=0.39 Score=37.77 Aligned_cols=74 Identities=14% Similarity=0.200 Sum_probs=38.3
Q ss_pred eeeeeeeccCCCCCCCCeEEEEecccCc--eeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCC------eeeEEE
Q psy10772 290 VHLSCFVKLPASMANQPMSWYHYSKDKG--RYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGN------TVLCTH 361 (378)
Q Consensus 290 ~~L~C~~r~~~~La~~~v~W~~~~~~~~--~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~------~~l~~~ 361 (378)
+.|.|...+- -|.+.|+|+.++.+-. ...+....+..-+.+..-|.|......|...|.|.+.. .+.-+|
T Consensus 2 ~~LtC~a~g~--~P~~~ItW~k~g~~l~~~~~~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l~~~~~~~~~ 79 (83)
T cd07705 2 AKLRCTSSGS--KPAANIKWRKGDQELEGAPTSVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESLHDSDRSTSQ 79 (83)
T ss_pred EEEEEEecCc--cCCCEeEEEECCEECCCcceeEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcccCCCCceeEE
Confidence 5689998532 2335899998875411 10111111111111122233333345567899999997 334455
Q ss_pred eeee
Q psy10772 362 NLTV 365 (378)
Q Consensus 362 ~~~v 365 (378)
.|+|
T Consensus 80 ~~~~ 83 (83)
T cd07705 80 RIEV 83 (83)
T ss_pred EeeC
Confidence 5544
No 164
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=92.77 E-value=0.54 Score=37.34 Aligned_cols=72 Identities=19% Similarity=0.311 Sum_probs=38.6
Q ss_pred eeeeeeeccCCCCCCCCeEEEEecccCce-eeEeeccCcceEeecCceEEeeecCCC-CeEEEEEeCCee----eEEEee
Q psy10772 290 VHLSCFVKLPASMANQPMSWYHYSKDKGR-YQIKFRSDKFIRTVDGGLVIMAVEELD-AGKYDCWLGNTV----LCTHNL 363 (378)
Q Consensus 290 ~~L~C~~r~~~~La~~~v~W~~~~~~~~~-~~l~~~~~~~~~~~~~GLlI~~v~~~D-sG~Y~C~~~~~~----l~~~~~ 363 (378)
+.|.|... .+-|.+.|+|+.++.+-.. .+.....++. ..+..-|.| .++..| ...|.|.+.+.. ..++.|
T Consensus 2 ~~L~C~s~--gSkP~A~I~W~k~~~~l~~~~~~~~~~~~~-~t~~S~L~~-~p~~eDdG~~~~C~a~~~~l~~~~~~~~L 77 (82)
T cd05883 2 IELNCTAM--ASKPAATIRWFKGNKELTGKSTVEETWSRM-FTVTSQLML-KVTKEDDGVPVICLVDHPAVKDLQTQRYL 77 (82)
T ss_pred EEEEEEec--CCCCCCEEEEEECCEECcCcccceeccCCC-cEEEEEEEE-ECchhhCCCEEEEEEcCcccCCceeeEEE
Confidence 46889873 3445579999987765111 0110001122 222333544 455555 568999998843 344555
Q ss_pred ee
Q psy10772 364 TV 365 (378)
Q Consensus 364 ~v 365 (378)
.|
T Consensus 78 ~V 79 (82)
T cd05883 78 EV 79 (82)
T ss_pred EE
Confidence 44
No 165
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=92.68 E-value=0.13 Score=40.53 Aligned_cols=68 Identities=18% Similarity=0.262 Sum_probs=37.8
Q ss_pred eCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCce----EEeeecCC---CCeEEEEEeCCeee
Q psy10772 286 WGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGL----VIMAVEEL---DAGKYDCWLGNTVL 358 (378)
Q Consensus 286 ~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GL----lI~~v~~~---DsG~Y~C~~~~~~l 358 (378)
.|+.+.|.|...+-.. +.+.|+|+.++.+...... ........+|. ....+... |.|.|.|.+.+..+
T Consensus 12 ~~~~~~L~C~a~g~~P-~~~~i~W~~~g~~~~~~~~----~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~ 86 (95)
T cd00098 12 LGGSVTLTCLATGFYP-PDITVTWLKNGKELTSGVT----TTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESL 86 (95)
T ss_pred cCCCeEEEEEEeeEEC-CCcEEEEEECCEECCCcee----ccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCC
Confidence 5889999999876411 0137899998764111000 01112223331 11234444 99999999986433
No 166
>KOG4194|consensus
Probab=92.61 E-value=1.4 Score=47.15 Aligned_cols=108 Identities=20% Similarity=0.278 Sum_probs=66.0
Q ss_pred EEEEEEeeeecCCCeEEEEEEECCCeeEEE-EeceeeeeccCCCCCcccccccceeEEEEeCCeeeeeeeeccCCCCCCC
Q psy10772 227 VVDVVQYEVFGTTSEYIVYFAATTTLRTVF-VKVRLLQDVSNTSDSICESSVGRLKQTVTWGQSVHLSCFVKLPASMANQ 305 (378)
Q Consensus 227 aVd~v~~~~~~~~~~ytV~flGT~~G~v~~-V~~~~lqd~~~~~~~~C~~~~~~k~~~~~~G~s~~L~C~~r~~~~La~~ 305 (378)
-+..|..+| .+-|++.-. ..-|.|.- +...+++. |+-- ++...+.++.|+.+.|.|...+.++ .|
T Consensus 672 ~Itnvk~eD---~GiYtC~A~-n~AG~isanAtL~V~e~-----p~f~---~PL~~~~V~~get~vlqC~a~~~~a--~p 737 (873)
T KOG4194|consen 672 FITNVKIED---QGIYTCTAQ-NVAGQISANATLTVLET-----PSFS---IPLEDQLVVVGETLVLQCLAEGAPA--DP 737 (873)
T ss_pred EEecccccc---cceeEEeee-ccccceeeceEEEEecC-----Cccc---ccccceEEEecceEEEEEecCCCCC--Cc
Confidence 344444444 477888833 34455432 12233332 2211 2445667888999999999865544 46
Q ss_pred CeEEEEecccCceeeEeeccCcceE--eecCceEEeeecCCCCeEEEEEeCC
Q psy10772 306 PMSWYHYSKDKGRYQIKFRSDKFIR--TVDGGLVIMAVEELDAGKYDCWLGN 355 (378)
Q Consensus 306 ~v~W~~~~~~~~~~~l~~~~~~~~~--~~~~GLlI~~v~~~DsG~Y~C~~~~ 355 (378)
.+.|+-..++ |.+ .+|+. -.+|=|++.+..-.|+|.|.|.--+
T Consensus 738 r~~W~k~d~p-----il~--t~rh~f~d~dQllvv~~~~~~daG~yTcem~~ 782 (873)
T KOG4194|consen 738 RLEWFKEDKP-----ILI--TERHTFPDGDQLLVVKENLVEDAGIYTCEMSN 782 (873)
T ss_pred cccccCCCCc-----eEE--eecccCCCCCeEEEEEehhhhhcceEEEEEEe
Confidence 7899876665 432 22222 2244477888889999999998876
No 167
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=90.17 E-value=0.36 Score=46.31 Aligned_cols=47 Identities=19% Similarity=0.529 Sum_probs=34.4
Q ss_pred CCCCCeEEEEecccCceeeEeeccCcceEeecCc-eEEeeecCCCCeEEEEEeC
Q psy10772 302 MANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGG-LVIMAVEELDAGKYDCWLG 354 (378)
Q Consensus 302 La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~G-LlI~~v~~~DsG~Y~C~~~ 354 (378)
|..|.-.|.-.+ ++ .|. ...++.+|+.| |++.+...++||.|.|.+.
T Consensus 10 ~iDP~y~W~GP~---g~-~l~--gn~~~nIT~TG~L~~~~F~esmSG~YTCtLs 57 (271)
T PF07354_consen 10 LIDPTYLWTGPN---GK-PLS--GNSYVNITETGKLMFKNFQESMSGSYTCTLS 57 (271)
T ss_pred cCCCceEEECCC---Cc-ccC--CCCeEEEccCceEEeeccccccCCceEEEEE
Confidence 455677997542 22 133 45567777777 9999999999999999875
No 168
>KOG1480|consensus
Probab=89.45 E-value=0.15 Score=55.24 Aligned_cols=64 Identities=27% Similarity=0.449 Sum_probs=49.5
Q ss_pred EEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCc-ceEeecCceEEeeecCCCCeEEEEEeCC
Q psy10772 283 TVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDK-FIRTVDGGLVIMAVEELDAGKYDCWLGN 355 (378)
Q Consensus 283 ~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~-~~~~~~~GLlI~~v~~~DsG~Y~C~~~~ 355 (378)
.|.+++...|.|.+ |..-+.+.+.|+.|+.. ++ +++ -+..++++|.|+.+...|+|.|.|.+.|
T Consensus 140 ~V~~~s~~~l~cr~--pe~~paae~~w~k~e~~-----~~--pd~n~~~~~d~~li~~~arlsd~~nytc~a~n 204 (909)
T KOG1480|consen 140 EVQEETTLQLPCRP--PEGDPKAEVEWLKNEVV-----ID--PDANVIRASDHNLIISQARLSDSGNYTCEATN 204 (909)
T ss_pred eecccccccccccC--cccchhhhhhccccCCC-----CC--ccccchhhhcCCccccchhhhhcccceeeeeh
Confidence 45667778899886 65555567899987643 32 333 4567899999999999999999999998
No 169
>KOG4222|consensus
Probab=89.05 E-value=0.49 Score=53.42 Aligned_cols=81 Identities=25% Similarity=0.270 Sum_probs=56.4
Q ss_pred cceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCC--
Q psy10772 278 GRLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGN-- 355 (378)
Q Consensus 278 ~~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~-- 355 (378)
+.+.+.+..|.++...|.+.+-+. |+|+|.-.... +. +...+++.-+++|-|.+++..|-|.|.|++.|
T Consensus 231 rp~~~~v~~g~~~~f~c~v~GdP~---P~Vrwkk~~~~-----~P-~~ry~i~~d~qtl~i~r~tp~deg~y~C~a~n~v 301 (1281)
T KOG4222|consen 231 RPKDLAVLVGAAAEFDCRVGGDPQ---PTVRWKKDDPS-----LP-RSRYSILDDTQTLRIDRVTPTDEGTYVCPAENLV 301 (1281)
T ss_pred ccccceeecccccccccccCCCCC---CceeeeccCCC-----CC-ccceeeeeccccccccccCCCcccceeeeccccc
Confidence 456788899999999999865444 68999763322 21 01122334458999999999999999999998
Q ss_pred -eeeEEEeeeecc
Q psy10772 356 -TVLCTHNLTVDA 367 (378)
Q Consensus 356 -~~l~~~~~~v~~ 367 (378)
.+-++=.++|.+
T Consensus 302 G~l~asa~ltV~a 314 (1281)
T KOG4222|consen 302 GGLEASATLTVQA 314 (1281)
T ss_pred cccccccceEEec
Confidence 444555555544
No 170
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=87.57 E-value=0.98 Score=37.20 Aligned_cols=69 Identities=16% Similarity=0.164 Sum_probs=38.9
Q ss_pred EEEeCCeeeeeeeeccCCCCCCCC--eEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCe-EEEEEeCC
Q psy10772 283 TVTWGQSVHLSCFVKLPASMANQP--MSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAG-KYDCWLGN 355 (378)
Q Consensus 283 ~~~~G~s~~L~C~~r~~~~La~~~--v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG-~Y~C~~~~ 355 (378)
.+.+|+.+.|.|.+..- -|.+. |+|+..+.+-.+.... ...+.......-|. ..+...|-| .|.|.+..
T Consensus 12 ~~~eG~~~tL~C~v~g~--~P~a~L~i~W~rG~~~l~~~~~~-~~~~~~~~~~stlt-~~~~r~D~g~~~sC~A~l 83 (100)
T cd05755 12 WQPVGKNYTLQCDVPGV--APRQNLTVVLLRGNETLSRQPFG-DNTKSPVNAPATIT-ITVDREDHGANFSCETEL 83 (100)
T ss_pred cccCCCcEEEEEEEcCc--CCCCcEEEEEeeCCEEcccceec-cccCCCceeEEEEE-EecchhhCCcEEEEEEEe
Confidence 46789999999998543 23344 7998765541110010 00001111122233 456778877 99999986
No 171
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=87.35 E-value=2.3 Score=36.04 Aligned_cols=73 Identities=8% Similarity=0.001 Sum_probs=44.8
Q ss_pred eeEEEEeCCeeeeeeeeccCCCCCC-CCeEEEEecccCceeeEee---------ccCcceEeec----Cc--eEEeeecC
Q psy10772 280 LKQTVTWGQSVHLSCFVKLPASMAN-QPMSWYHYSKDKGRYQIKF---------RSDKFIRTVD----GG--LVIMAVEE 343 (378)
Q Consensus 280 k~~~~~~G~s~~L~C~~r~~~~La~-~~v~W~~~~~~~~~~~l~~---------~~~~~~~~~~----~G--LlI~~v~~ 343 (378)
...++.+|+++.|.|...+. .++. -.+.|..+... +-+-+-. ....++..+. +. |-|.+|+.
T Consensus 6 ~~~lv~p~~sv~LsC~~sg~-~~s~e~~~~wvRq~pg-~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a 83 (115)
T cd05721 6 SPVLASSNGAASLVCEYTYN-GFSKEFRASLLKGADS-AVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRA 83 (115)
T ss_pred CCeEEcCCCCEEEEEEecCC-ccccEEEEEEEEeCCC-CcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCH
Confidence 34678889999999988544 3443 36789877543 2110110 0112222211 11 88999999
Q ss_pred CCCeEEEEEeC
Q psy10772 344 LDAGKYDCWLG 354 (378)
Q Consensus 344 ~DsG~Y~C~~~ 354 (378)
+|++.|.|...
T Consensus 84 ~DTa~Y~Ca~e 94 (115)
T cd05721 84 NQTDIYFCKIE 94 (115)
T ss_pred HHCeEEEEEee
Confidence 99999999653
No 172
>KOG3515|consensus
Probab=86.51 E-value=0.49 Score=51.69 Aligned_cols=64 Identities=20% Similarity=0.355 Sum_probs=49.2
Q ss_pred EEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCCe
Q psy10772 283 TVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGNT 356 (378)
Q Consensus 283 ~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~~ 356 (378)
-+..|++|.|+|.+++.+.+ +.+.|+|..+. ++ +.+..+.++=|+..+..+..-+.|.|.+.|.
T Consensus 18 ~~~~g~~v~l~C~v~~~pp~--~~~eW~h~~~~-----~~---~~~~~~~~~~~~~~~~~~~~~~~~~c~a~ns 81 (741)
T KOG3515|consen 18 GLRLGEDVPLPCRVNSNPPE--IDVEWYHSTSG-----EH---GRYATIADPTLVTTGDVRDTVAELNCRAFNS 81 (741)
T ss_pred hhccCCcceeeeecCCCCCC--cceEEEecCcc-----cc---cccccccCCceeeecchhhhhhhhhhhhccc
Confidence 56679999999999877665 47999998764 32 3344455667777777888889999999984
No 173
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=83.75 E-value=8.6 Score=32.69 Aligned_cols=31 Identities=10% Similarity=0.198 Sum_probs=21.3
Q ss_pred EEEeCCeeeeeeeeccCCCCCCCCeEEEEecc
Q psy10772 283 TVTWGQSVHLSCFVKLPASMANQPMSWYHYSK 314 (378)
Q Consensus 283 ~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~ 314 (378)
....|+.+.|.|...+-... .+.|+|+.++.
T Consensus 49 ~~~~~~~~~L~C~a~g~~P~-~~~i~W~~~g~ 79 (139)
T cd05771 49 VSMIEEPQTLICHIAGYYPL-DVQVEWTREPP 79 (139)
T ss_pred eeecCCcEEEEEEECCCCCC-CeEEEEEECCC
Confidence 34478899999999762111 13789998864
No 174
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=82.39 E-value=6.6 Score=30.79 Aligned_cols=66 Identities=15% Similarity=0.207 Sum_probs=33.2
Q ss_pred eeeeeeeccCCCCCCCCeEEEEecccCcee-eEee-ccCcceEeecCceEEeeecCCCCeEEEEEeCCee
Q psy10772 290 VHLSCFVKLPASMANQPMSWYHYSKDKGRY-QIKF-RSDKFIRTVDGGLVIMAVEELDAGKYDCWLGNTV 357 (378)
Q Consensus 290 ~~L~C~~r~~~~La~~~v~W~~~~~~~~~~-~l~~-~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~~~ 357 (378)
+.|.|...+- -|.+.|+|+.|+.+-... .... .+.+.-..+-.-|.|..-...|...|.|.+.+..
T Consensus 2 ~~LtC~a~gf--~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~ 69 (83)
T cd05884 2 MQLTCKTSGS--KPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHES 69 (83)
T ss_pred EEEEEEeCCc--cCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechh
Confidence 4688998642 223589999987651100 0000 0111111112234443222445679999998743
No 175
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=81.82 E-value=6.2 Score=31.33 Aligned_cols=61 Identities=21% Similarity=0.428 Sum_probs=36.8
Q ss_pred CCeeeeeeeecc--CCCCCCCCeEEEEecc-cCceeeEeeccCcceEeecCce----EEeeecCCCCeEEEEEeCC
Q psy10772 287 GQSVHLSCFVKL--PASMANQPMSWYHYSK-DKGRYQIKFRSDKFIRTVDGGL----VIMAVEELDAGKYDCWLGN 355 (378)
Q Consensus 287 G~s~~L~C~~r~--~~~La~~~v~W~~~~~-~~~~~~l~~~~~~~~~~~~~GL----lI~~v~~~DsG~Y~C~~~~ 355 (378)
|+.+.|.|...+ |+.+ .|+|+.++. .... . ....+...++|. -.+.|...|.+.|.|....
T Consensus 14 ~~~~~L~C~a~gF~P~~i---~v~W~~~g~~~~~~--~---~~~~~~~~~d~ty~~~s~l~v~~~~~~~ytC~V~H 81 (93)
T cd07698 14 DGSLTLSCHATGFYPRDI---EVTWLRDGEDSVDD--V---ESGEILPNGDGTYQLWVTLEVPPEDKARYSCRVEH 81 (93)
T ss_pred CCcEEEEEEEEEEeCCCc---EEEEEECCEECccc--c---cccceEECCCCeEEEEEEEEECCCCCCEEEEEEEe
Confidence 678899999986 4332 689999874 2110 1 011122233332 1334566789999999876
No 176
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=80.66 E-value=5.8 Score=33.08 Aligned_cols=82 Identities=21% Similarity=0.259 Sum_probs=44.0
Q ss_pred EeCCeeeeeeeecc--CCCCCCCCeEEEEecccCcee--eEeeccCc-ceEeecCceEEeeecCCCCeE-EEEEeCC---
Q psy10772 285 TWGQSVHLSCFVKL--PASMANQPMSWYHYSKDKGRY--QIKFRSDK-FIRTVDGGLVIMAVEELDAGK-YDCWLGN--- 355 (378)
Q Consensus 285 ~~G~s~~L~C~~r~--~~~La~~~v~W~~~~~~~~~~--~l~~~~~~-~~~~~~~GLlI~~v~~~DsG~-Y~C~~~~--- 355 (378)
..|+.+.|.|.... |.. ..|+|+.|+.+.... .+....++ .+.. ..-|-......|.|. |.|....
T Consensus 19 ~~g~~~tL~C~a~gF~P~~---i~v~W~kng~~~~~~~~~~~p~~d~~ty~~--~S~L~~~~~~~d~~~~ytC~V~H~~l 93 (111)
T cd05772 19 NPGQSVNFTCSAHGFSPRD---ITVKWLKNGNELSAEQPNITPEGDSVSYNV--TSTVQVKLTEDDVHSQVTCEVQHRTL 93 (111)
T ss_pred CCCCCEEEEEEEeeEeCCC---CEEEEEECCEECcccccceeeCCCCCcEEE--EEEEEEECccccccCceEEEEEeCCC
Confidence 45778899998875 332 378999998651110 11111111 1111 112333456667664 9997654
Q ss_pred --eeeEEEeeeecccccCCC
Q psy10772 356 --TVLCTHNLTVDAHSNVAD 373 (378)
Q Consensus 356 --~~l~~~~~~v~~~~c~~~ 373 (378)
.....+.+ -..-|.+|
T Consensus 94 ~~p~~~~~~~--~~~~~~~~ 111 (111)
T cd05772 94 QAPLRGTYNL--SQALRVPP 111 (111)
T ss_pred CCCeEEEEEc--ccEEEcCC
Confidence 34444554 55556655
No 177
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=78.17 E-value=12 Score=31.28 Aligned_cols=34 Identities=32% Similarity=0.426 Sum_probs=22.4
Q ss_pred ecCceEEeeecCCCCeEEEEEeCC--eeeEEEeeee
Q psy10772 332 VDGGLVIMAVEELDAGKYDCWLGN--TVLCTHNLTV 365 (378)
Q Consensus 332 ~~~GLlI~~v~~~DsG~Y~C~~~~--~~l~~~~~~v 365 (378)
.+-.|+|..++.+|||.|.=...+ ..+|..+..|
T Consensus 69 enlaLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqV 104 (108)
T PF11465_consen 69 ENLALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQV 104 (108)
T ss_dssp TTTEEEESS-SGGG-EEEEEEEEETTSCEEEEEEEE
T ss_pred cCceEEEeecCcccCceEEEEEEcCCCcEEEEEEEE
Confidence 345699999999999999765543 5556555443
No 178
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=71.00 E-value=3.9 Score=35.40 Aligned_cols=29 Identities=24% Similarity=0.532 Sum_probs=16.6
Q ss_pred CCeeeeeeeeccC--CCCCCCCeEEEEeccc
Q psy10772 287 GQSVHLSCFVKLP--ASMANQPMSWYHYSKD 315 (378)
Q Consensus 287 G~s~~L~C~~r~~--~~La~~~v~W~~~~~~ 315 (378)
++++.|+|.+.-. .++..--|+|.++++.
T Consensus 27 N~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~ 57 (130)
T PF08204_consen 27 NDTVVIPCFVNNLEANNISEMYVKWKFKNKD 57 (130)
T ss_dssp -SEEEE--BBSS---SSGGGEEEEEEETTEE
T ss_pred CCCEEEEeEeccccccccceEEEEEEECCeE
Confidence 7899999998521 1222225899998764
No 179
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=70.23 E-value=8.4 Score=29.64 Aligned_cols=49 Identities=22% Similarity=0.327 Sum_probs=29.1
Q ss_pred CCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCC
Q psy10772 287 GQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGN 355 (378)
Q Consensus 287 G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~ 355 (378)
.++|+|.|.. + .+|+|+. +.. +.. .+.. ..+.|- +.+.=.|.|.|.+.+
T Consensus 6 ~~~V~L~C~~----~---tsi~W~k-G~~-----~~~-~~~~--tlnLGs----~~~DPRG~Y~C~~s~ 54 (69)
T cd07691 6 EGKVFLKCNG----A---TNITWKK-GKE-----ILE-VSNT--LLDLGS----RINDPRGTYSCKESE 54 (69)
T ss_pred CceEEEEecC----C---CcEEEec-Ccc-----ccc-cccc--EEeccC----cccCCCcceEecCcc
Confidence 4589999964 1 2699987 543 210 1111 223333 334459999999976
No 180
>PHA02982 hypothetical protein; Provisional
Probab=70.13 E-value=8.3 Score=36.11 Aligned_cols=82 Identities=16% Similarity=0.265 Sum_probs=49.2
Q ss_pred EEEEeCCeeeeeeeeccCCCCCCCCeEEEEeccc------CceeeEee---ccCcc---eEee----cCceEEeeecCCC
Q psy10772 282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKD------KGRYQIKF---RSDKF---IRTV----DGGLVIMAVEELD 345 (378)
Q Consensus 282 ~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~------~~~~~l~~---~~~~~---~~~~----~~GLlI~~v~~~D 345 (378)
+....++++.|.|.-+.-.++. +++|.-...- .+-..|.. -++++ ..++ ..-|.|.++..+.
T Consensus 34 v~a~vd~~V~L~C~~~~~~~i~--~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N 111 (251)
T PHA02982 34 VNATVDQEVKLQCLFKDADEIS--RAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQN 111 (251)
T ss_pred hhccCCCcEEEEecCCCcchhh--hheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCccc
Confidence 3456699999999975555554 4589642110 00011110 01111 1222 2349999999999
Q ss_pred CeEEEEEeCC----eeeEEEeeee
Q psy10772 346 AGKYDCWLGN----TVLCTHNLTV 365 (378)
Q Consensus 346 sG~Y~C~~~~----~~l~~~~~~v 365 (378)
.|+|.|.+.- .--|.-+|.|
T Consensus 112 ~GCYtc~~ks~~~k~E~c~kCl~V 135 (251)
T PHA02982 112 LGCFTCEAKDAEGKEETCEKCLEI 135 (251)
T ss_pred CCceEEEEecCCCchheeheeeeE
Confidence 9999999864 5567777777
No 181
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=65.47 E-value=7.5 Score=30.12 Aligned_cols=67 Identities=15% Similarity=0.229 Sum_probs=35.0
Q ss_pred CCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEe--eccCcceEeecCceEEeeecCC-CCeEEEEEeCCe
Q psy10772 287 GQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIK--FRSDKFIRTVDGGLVIMAVEEL-DAGKYDCWLGNT 356 (378)
Q Consensus 287 G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~--~~~~~~~~~~~~GLlI~~v~~~-DsG~Y~C~~~~~ 356 (378)
|..+.|.|...+ +-|.|.|+|+.++......... ...+....... ..|.+.++.. +--.+.|.+.+.
T Consensus 14 ~~~~~~~C~s~~--~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~-S~l~~~~~~~~~~~~~~C~~~~~ 83 (89)
T PF08205_consen 14 GEEVTLTCSSSG--GYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVS-STLTLTPTREDHGKTLTCRASHP 83 (89)
T ss_dssp TEEEEEEEEEEE--EBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEE-EEEEEETTGGGTTEEEEEEEEET
T ss_pred ceEEEEEEEeCC--eECCeEEEEEECCCceeeeeeeeeeccCCCcceEE-EEEEEEcChHHCCeEEEEEEECC
Confidence 668999997642 2344689999887652000011 11222222222 2233444544 466889998763
No 182
>PHA03042 CD47-like protein; Provisional
Probab=64.51 E-value=12 Score=36.39 Aligned_cols=60 Identities=17% Similarity=0.290 Sum_probs=38.5
Q ss_pred eCCeeeeeeeeccCCC--CCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCC
Q psy10772 286 WGQSVHLSCFVKLPAS--MANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGN 355 (378)
Q Consensus 286 ~G~s~~L~C~~r~~~~--La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~ 355 (378)
=++++.++|....+.+ ...--|.|.+|++. +-. .++ +...-|.++-++.=+|.|.|.+.|
T Consensus 30 CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~-----If~-~n~----tn~aSL~~~f~~~l~GNYTCEv~~ 91 (286)
T PHA03042 30 CNKTIVIVCNLNLLIYYNISNIHINWKFNNKV-----IFK-KNN----TNTSSLKFNFSKNLSGNYTCEAIN 91 (286)
T ss_pred cCceEEEEeecCChhhcCccceEEEEEeCCee-----EEE-ecC----CcceEEEEeccccCCCceeEEEee
Confidence 3889999999865411 01124899999865 321 111 122346777777779999999765
No 183
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=62.82 E-value=24 Score=28.24 Aligned_cols=28 Identities=18% Similarity=0.476 Sum_probs=20.6
Q ss_pred EeCCeeeeeeeecc--CCCCCCCCeEEEEeccc
Q psy10772 285 TWGQSVHLSCFVKL--PASMANQPMSWYHYSKD 315 (378)
Q Consensus 285 ~~G~s~~L~C~~r~--~~~La~~~v~W~~~~~~ 315 (378)
..|+.+.|.|.+.. |++ -.|+|+.++.+
T Consensus 12 ~~~~~~~L~C~~~gFyP~~---i~v~W~~~g~~ 41 (94)
T cd05766 12 SLSHPHLLVCHVWGFYPPE---ITVKWFKNGQE 41 (94)
T ss_pred cCCCCeEEEEEEeeecCCC---CEEEEEECCee
Confidence 35788999999875 333 26899998765
No 184
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=57.76 E-value=32 Score=27.71 Aligned_cols=62 Identities=13% Similarity=0.258 Sum_probs=34.9
Q ss_pred eCCeeeeeeeecc--CCCCCCCCeEEEEecccCceeeEeeccCcceEeecCc----eEEeeecCCCCeEEEEEeCC
Q psy10772 286 WGQSVHLSCFVKL--PASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGG----LVIMAVEELDAGKYDCWLGN 355 (378)
Q Consensus 286 ~G~s~~L~C~~r~--~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~G----LlI~~v~~~DsG~Y~C~~~~ 355 (378)
.|+...|.|.... |+. -.|+|+.|+.+... .. ... ++..++| ..-..+...+...|.|...-
T Consensus 14 ~g~~~~L~C~a~gFyP~~---i~v~W~~dg~~~~~--~~--~~~-~~p~~d~tyq~~s~l~~~~~~~~~ysC~V~H 81 (93)
T cd05770 14 NGKPNVLNCYVTGFHPPD---IEIRLLKNGVKIPK--VE--QSD-LSFSKDWTFYLLKSTEFTPTKGDEYACRVRH 81 (93)
T ss_pred CCCceEEEEEEEEEeCCC---CEEEEEECCEECCC--cE--ECc-EEECCCCCEEEEEEEEECCCCCCeEEEEEEE
Confidence 3566689999875 333 26899998865210 11 111 2222233 22234566777789998753
No 185
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=54.79 E-value=33 Score=27.61 Aligned_cols=62 Identities=21% Similarity=0.368 Sum_probs=33.2
Q ss_pred CCeeeeeeeecc--CCCCCCCCeEEEEecccC--cee--eEeeccCcceEeecCceEEeeecCCCCeEEEEEeCC
Q psy10772 287 GQSVHLSCFVKL--PASMANQPMSWYHYSKDK--GRY--QIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGN 355 (378)
Q Consensus 287 G~s~~L~C~~r~--~~~La~~~v~W~~~~~~~--~~~--~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~ 355 (378)
|....|.|...+ |.. -.|+|+.|+.+. +.. .+....|..+... .-| .+...+...|.|...-
T Consensus 15 ~~~~tL~C~a~gFyP~~---I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~-s~L---~v~~~~~~~ytC~V~H 82 (94)
T cd05767 15 GEPNTLICFVDNFFPPV---LNVTWLKNGVPVTDGVSETRYYPRQDLSFQKF-SYL---NFTPEEGDIYSCIVEH 82 (94)
T ss_pred CCCeEEEEEEEEEECCc---CEEEEEECCeEccCceEEeeeEeCCCCcEEEE-EEE---EEECCCCCeEEEEEEe
Confidence 555789999875 333 268999987651 110 1111122222221 112 3445667799998653
No 186
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=52.99 E-value=37 Score=34.85 Aligned_cols=72 Identities=19% Similarity=0.366 Sum_probs=45.8
Q ss_pred EEEEeCCeeeeeeeecc--CCCCCCCCeEEEEecccCce----ee---E---e-eccCcceEee---------cCceEEe
Q psy10772 282 QTVTWGQSVHLSCFVKL--PASMANQPMSWYHYSKDKGR----YQ---I---K-FRSDKFIRTV---------DGGLVIM 339 (378)
Q Consensus 282 ~~~~~G~s~~L~C~~r~--~~~La~~~v~W~~~~~~~~~----~~---l---~-~~~~~~~~~~---------~~GLlI~ 339 (378)
+++..|..+-|+|.-.. +.++. +++|.-.+.+-++ +. + . ++.+++.+.. ..-|.|.
T Consensus 274 ~~~~~g~~v~~~c~~s~~~~e~i~--~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIk 351 (500)
T PHA02914 274 VMLEVGKRVDIECFFSMCGNENIS--NAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIK 351 (500)
T ss_pred eEeccCcEEEEEEEEeecCCcccc--cceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEee
Confidence 34555999999999752 35554 4599876655221 10 1 0 1233443332 2348999
Q ss_pred eecCCCCeEEEEEeCC
Q psy10772 340 AVEELDAGKYDCWLGN 355 (378)
Q Consensus 340 ~v~~~DsG~Y~C~~~~ 355 (378)
+++-..+|+|.|++--
T Consensus 352 ka~I~N~GCY~~~a~~ 367 (500)
T PHA02914 352 KAHINNAGCYEAQAFM 367 (500)
T ss_pred eEEEEcCCceEEEEec
Confidence 9999999999999874
No 187
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=51.71 E-value=29 Score=26.61 Aligned_cols=28 Identities=29% Similarity=0.551 Sum_probs=19.4
Q ss_pred CCeeeeeeeeccCCCCCCCCeEEEEeccc
Q psy10772 287 GQSVHLSCFVKLPASMANQPMSWYHYSKD 315 (378)
Q Consensus 287 G~s~~L~C~~r~~~~La~~~v~W~~~~~~ 315 (378)
++.+.|.|.+..-.. +.-.|+|+.++..
T Consensus 8 ~~~~~L~C~v~~f~P-~~i~v~W~~~~~~ 35 (83)
T PF07654_consen 8 GGSVTLTCLVSGFYP-KDITVTWLKNGKE 35 (83)
T ss_dssp TSEEEEEEEEEEEBS-STEEEEEEETTEE
T ss_pred CCCEEEEEEEEEEEC-CCcEEEEEeccce
Confidence 788999999974321 1126899988754
No 188
>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []. The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.
Probab=47.65 E-value=66 Score=25.74 Aligned_cols=65 Identities=22% Similarity=0.371 Sum_probs=37.4
Q ss_pred eEEEEeCCeeeeeeeeccCCC---CCCCCeEEEEecccCceeeEeeccCcceEeecCc---eEEeeecCCCCeEEEEEeC
Q psy10772 281 KQTVTWGQSVHLSCFVKLPAS---MANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGG---LVIMAVEELDAGKYDCWLG 354 (378)
Q Consensus 281 ~~~~~~G~s~~L~C~~r~~~~---La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~G---LlI~~v~~~DsG~Y~C~~~ 354 (378)
...+..|+++...|..+..-. .| ..|.|.+|+.. + +.+++....++ +.|.++....+-.|.|...
T Consensus 12 ~pvv~lGS~vtasC~l~~~c~~~~~a-~~I~Wkln~~~-----i---P~~qy~~in~~~SsVT~~~~~~~~~~L~cC~l~ 82 (89)
T PF06328_consen 12 SPVVSLGSNVTASCVLKQNCSHSVNA-SQIVWKLNGEK-----I---PGSQYRVINDTVSSVTLPNLNPTGATLFCCKLA 82 (89)
T ss_dssp SSEEETTS-EEEEEEE-CCCHCT-ST-TCEEEECSSCE-----S---TCGCEEEESTTEEEEEESS--SSEEEEEEEEEC
T ss_pred CCEEeCCCCEEEEEEEECCCCCCccc-ceEEEEECCEE-----C---ChhHcceeCCeEEEEEEccCCCCCceEEEEEEc
Confidence 446678999999999973211 23 37999998753 3 34444444444 4444444555568888754
No 189
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=47.23 E-value=1e+02 Score=24.81 Aligned_cols=65 Identities=12% Similarity=0.184 Sum_probs=32.2
Q ss_pred eeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCCe
Q psy10772 289 SVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGNT 356 (378)
Q Consensus 289 s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~~ 356 (378)
...+.|... .+-|.+.|+|+.+........-....++.+. ...=|.+..-.+.|.-.|.|.+.+.
T Consensus 17 ~~va~C~s~--~gkPaa~IsW~~~~~g~~~~~~~~~~~gt~t-v~S~l~~~P~~~d~Gk~ltC~v~h~ 81 (95)
T cd07703 17 VPVAKCVSA--NGRPPARISWSSTLGGNANTTSKENGDGTVT-VTSEYSLVPTPEANGKEVTCKVEHE 81 (95)
T ss_pred cEEEEEEcC--CCCCCcEEEEEcCCCCCeeEEEEeCCCCCEE-EEEEEEEecCHHHCCCEEEEEEeCc
Confidence 457899864 2334469999976321000000001222222 1222333333344566899999983
No 190
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=45.60 E-value=52 Score=27.12 Aligned_cols=66 Identities=15% Similarity=0.120 Sum_probs=37.0
Q ss_pred EEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeecc--C---cceEeecCceEEeeecCCCCe-EEEEEeC
Q psy10772 284 VTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRS--D---KFIRTVDGGLVIMAVEELDAG-KYDCWLG 354 (378)
Q Consensus 284 ~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~--~---~~~~~~~~GLlI~~v~~~DsG-~Y~C~~~ 354 (378)
+..|..+.+.|.+..--......|.|+. +.. .|+-++ + ..-..+..--+-+.++.+|-| .|.|.+.
T Consensus 12 l~~G~~vtv~C~v~~v~P~~~l~v~Llk-G~~----~l~~~~f~~~~~~ks~~~~~~~vtftptreD~g~~fsC~A~ 83 (99)
T cd07689 12 LEEGKPVTVKCEVPDVYPFDRLEIELLK-GET----LLPSKSFLEDMDKKSLETKSLEVTFTPTIEDIGKVLVCRAK 83 (99)
T ss_pred ccCCceEEEEEEecCcccCCceEEEEec-Ccc----eecccccccccccCCCCCcceeEEEecchhhCCcEEEEEEE
Confidence 4679999999998533322234689973 432 132110 0 000011112344556789988 8999886
No 191
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=45.45 E-value=1.7e+02 Score=23.90 Aligned_cols=81 Identities=11% Similarity=0.197 Sum_probs=43.6
Q ss_pred EEEEeCCeeee-eeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCC-----
Q psy10772 282 QTVTWGQSVHL-SCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGN----- 355 (378)
Q Consensus 282 ~~~~~G~s~~L-~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~----- 355 (378)
+.+.+|+.+.| .|.. .-+-|.+.|+|+-+.......+..-.+++.+.++ .-|.+..-...|.-.+.|....
T Consensus 11 ~~~~~g~~~~vA~C~s--a~gkPaa~IsW~~~~~G~~~~~~~~~~ngT~TV~-S~~~l~p~r~d~G~~vtC~V~H~al~~ 87 (97)
T cd07704 11 LLIDGGNGTTLAACCA--AEGRPAADVTWETNVYGTSESHSQEHPNGTTTVT-SEYIWVPSRHANGHPLTCVVSHPALQQ 87 (97)
T ss_pred eEeecCcceeEEEEEc--cCCccCCEeEEeCCCCCccceeeecCCCCCEEEE-EEEEEEeCHHHCCcEEEEEEeCcccCC
Confidence 45667899999 8986 3344556999986532211111111122333322 2344433344566689999865
Q ss_pred eeeEEEeeee
Q psy10772 356 TVLCTHNLTV 365 (378)
Q Consensus 356 ~~l~~~~~~v 365 (378)
....+|.|+|
T Consensus 88 ~~~~~~~L~V 97 (97)
T cd07704 88 DFRITHILNV 97 (97)
T ss_pred CceeeEEeeC
Confidence 4445555543
No 192
>PF02440 Adeno_E3_CR1: Adenovirus E3 region protein CR1; InterPro: IPR003471 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D virus) 49 Kd protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=44.87 E-value=70 Score=24.16 Aligned_cols=56 Identities=25% Similarity=0.431 Sum_probs=30.1
Q ss_pred EEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcc------eEeecCceEEeeecCCCCe
Q psy10772 284 VTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKF------IRTVDGGLVIMAVEELDAG 347 (378)
Q Consensus 284 ~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~------~~~~~~GLlI~~v~~~DsG 347 (378)
+..|+...|. +|+. .+|+|+.........+|= .-++. +.=.++-|.|.+|+..+.|
T Consensus 2 v~~G~N~TL~----Gp~~---~~V~Wy~~~~~~~~~~lC-~g~~~~~~~l~~tCn~qNLTLinVt~~~~G 63 (63)
T PF02440_consen 2 VTVGSNVTLV----GPPD---GPVTWYKFHSDGDFKKLC-NGNKTKHPELNHTCNGQNLTLINVTKTYNG 63 (63)
T ss_pred EeEcCcEEEe----CCCC---CceEEEEecCCCCccccC-CCCCccccceEeEecCCeEEEEEecccccC
Confidence 5567777772 3543 369998332211111121 11111 2234677999999888876
No 193
>KOG3515|consensus
Probab=44.58 E-value=41 Score=37.24 Aligned_cols=72 Identities=18% Similarity=0.150 Sum_probs=48.3
Q ss_pred eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeecc---------CcceEeecCceEEeeecCCCCeEEE
Q psy10772 280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRS---------DKFIRTVDGGLVIMAVEELDAGKYD 350 (378)
Q Consensus 280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~---------~~~~~~~~~GLlI~~v~~~DsG~Y~ 350 (378)
.......+..+.+.|..+ ..+++.++++|.++..- ++...+ -.........|-+....++|.|.|.
T Consensus 105 ~e~~~~~~~vvqi~c~~~-~~~~P~~nlrW~~n~r~----e~~~~~~~~~~~~~a~gss~t~~s~l~~~v~Rka~~g~~t 179 (741)
T KOG3515|consen 105 GEIFQVDKGVVQIICSAK-VAGRPNPNLRWGFNNRA----ELNAVNQRGRVGAGALGSSYTEPSLLKQTVSRKADNGNYT 179 (741)
T ss_pred cchhhhcCCeEEEEEeec-CCCCCCcceeeeeccEE----eecccCCcccccccccCceeccccceeeEEEEecCCceeE
Confidence 344556688888999765 55667779999998653 111111 0112234566888888899999999
Q ss_pred EEeCCe
Q psy10772 351 CWLGNT 356 (378)
Q Consensus 351 C~~~~~ 356 (378)
|.++++
T Consensus 180 C~A~nr 185 (741)
T KOG3515|consen 180 CPANNR 185 (741)
T ss_pred cccccc
Confidence 999983
No 194
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=44.17 E-value=1.4e+02 Score=23.92 Aligned_cols=63 Identities=13% Similarity=0.198 Sum_probs=30.8
Q ss_pred eeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCC-CCeEEEEEeCC
Q psy10772 289 SVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEEL-DAGKYDCWLGN 355 (378)
Q Consensus 289 s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~-DsG~Y~C~~~~ 355 (378)
...+.|... .+-|.+.|+|+.+.............++.+ ....=|.+ ..+.. |.-.|.|.+.+
T Consensus 17 ~~va~C~s~--~gkP~a~ItW~~~~~~~~~~~~~~~~~g~~-tv~S~l~~-~p~~~d~G~~~tC~v~h 80 (95)
T cd05719 17 VTVATCVSA--NGKPPATISWETTLGGEAETQSKENPNGTV-TVTSEYRL-VPSREANGKELTCVVSH 80 (95)
T ss_pred cEEEEEECC--CCcCCCEEEEEeCCCCcceeEeecCCCCCE-EEEEEEEE-ecCHHHCCCEEEEEEeC
Confidence 456889873 233446999987622110000100112111 11222333 34444 45689999987
No 195
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=39.06 E-value=44 Score=28.02 Aligned_cols=27 Identities=22% Similarity=0.433 Sum_probs=19.6
Q ss_pred eCCeeeeeeeecc--CCCCCCCCeEEEEeccc
Q psy10772 286 WGQSVHLSCFVKL--PASMANQPMSWYHYSKD 315 (378)
Q Consensus 286 ~G~s~~L~C~~r~--~~~La~~~v~W~~~~~~ 315 (378)
.++.+.|.|.++. |.. -.|+|+.|+.+
T Consensus 17 ~~~~~tL~Cla~gFyP~~---I~V~W~kng~~ 45 (115)
T cd05769 17 NKRKATLVCLATGFYPDH---VSLSWKVNGKE 45 (115)
T ss_pred cCCCcEEEEEEEeEeCCC---cEEEEEECCEE
Confidence 3567889999875 433 27899998754
No 196
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=38.05 E-value=1.3e+02 Score=22.58 Aligned_cols=25 Identities=16% Similarity=0.422 Sum_probs=15.9
Q ss_pred eeeeeeeccCCCCCCCCeEEEEeccc
Q psy10772 290 VHLSCFVKLPASMANQPMSWYHYSKD 315 (378)
Q Consensus 290 ~~L~C~~r~~~~La~~~v~W~~~~~~ 315 (378)
+.|.|..+.--. +...|+|+.++.+
T Consensus 2 ~~L~C~a~gf~P-~~i~v~W~k~g~~ 26 (75)
T smart00407 2 ATLVCLVSGFYP-PDITVTWLRNGQE 26 (75)
T ss_pred eEEEEEEEeEeC-CCCEEEEEECCEE
Confidence 468898764211 1137899998764
No 197
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=32.51 E-value=59 Score=26.20 Aligned_cols=29 Identities=10% Similarity=0.152 Sum_probs=20.1
Q ss_pred eCCeeeeeeeeccCCCCCCCCeEEEEeccc
Q psy10772 286 WGQSVHLSCFVKLPASMANQPMSWYHYSKD 315 (378)
Q Consensus 286 ~G~s~~L~C~~r~~~~La~~~v~W~~~~~~ 315 (378)
.++.+.|.|.+..-.. ....|+|+.|+.+
T Consensus 16 ~~~~~~L~C~~~gfyP-~~i~v~W~~~g~~ 44 (100)
T cd07699 16 KSGKATLVCLINDFYP-GFATVQWKVDGAT 44 (100)
T ss_pred cCCCcEEEEEEEeEEC-CCCEEEEEECCEE
Confidence 3667899999875321 1237899998865
No 198
>PHA03290 envelope glycoprotein I; Provisional
Probab=29.08 E-value=2.4e+02 Score=28.33 Aligned_cols=47 Identities=26% Similarity=0.280 Sum_probs=28.1
Q ss_pred CCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCc--eEEeeecCCCCeEEEEE
Q psy10772 287 GQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGG--LVIMAVEELDAGKYDCW 352 (378)
Q Consensus 287 G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~G--LlI~~v~~~DsG~Y~C~ 352 (378)
++++|-.|..+ .+|.+.... . ++.... ++| |-|++-...|||.|.=.
T Consensus 99 ~a~AFr~CR~k---------~s~hy~~~~-~--Ri~t~v-------e~~vLL~I~~P~~~DSGiY~LR 147 (357)
T PHA03290 99 RTGAFIACRVK---------HSWHYENAT-D--RILTDP-------DAEIIFKINKPGIEDAGIYLLL 147 (357)
T ss_pred ccchhhhhhhc---------cccccCCcc-c--cccCCC-------CcceEEEeCCCCcccCeeEEEE
Confidence 67888889752 357543211 1 132111 344 56788889999999753
No 199
>PHA03189 UL14 tegument protein; Provisional
Probab=28.47 E-value=2.6e+02 Score=27.81 Aligned_cols=20 Identities=35% Similarity=0.622 Sum_probs=16.9
Q ss_pred EEeeecCCCCeEEEEEeCCe
Q psy10772 337 VIMAVEELDAGKYDCWLGNT 356 (378)
Q Consensus 337 lI~~v~~~DsG~Y~C~~~~~ 356 (378)
|-++|..+-||.|.|.+.|.
T Consensus 136 LtF~v~t~taG~Y~CvLrN~ 155 (348)
T PHA03189 136 LTFRVSTSTAGMYECVLRNE 155 (348)
T ss_pred EEEEEEecccceEEEEeccc
Confidence 45678889999999999993
No 200
>PHA03052 Hypothetical protein; Provisional
Probab=27.77 E-value=1.5e+02 Score=22.76 Aligned_cols=36 Identities=14% Similarity=0.300 Sum_probs=25.0
Q ss_pred eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEeccc
Q psy10772 280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKD 315 (378)
Q Consensus 280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~ 315 (378)
+.+.+.-|+.+.|.|.+..-..-..+-|.|..|+..
T Consensus 5 ~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~ 40 (69)
T PHA03052 5 EGIVTSLGSNLTITCKVSLRPPTTDADVFWISNGMY 40 (69)
T ss_pred ccEEEEccCCceEeEEEEecCCCcceEEEEEeCCcE
Confidence 556777799999999986332222346889988753
No 201
>PF15096 G6B: G6B family
Probab=26.59 E-value=60 Score=29.87 Aligned_cols=37 Identities=19% Similarity=0.179 Sum_probs=25.6
Q ss_pred ecCCCCeEEEEEeCC--eeeEEEeeeecccccCCCCCCC
Q psy10772 341 VEELDAGKYDCWLGN--TVLCTHNLTVDAHSNVADAPTR 377 (378)
Q Consensus 341 v~~~DsG~Y~C~~~~--~~l~~~~~~v~~~~c~~~~~~~ 377 (378)
++..|+|+|.|.... +---...+-=|...|.+|.||.
T Consensus 81 Ls~GDSGTFfCkGr~e~ESRT~LhVLGD~a~Cr~~gpt~ 119 (224)
T PF15096_consen 81 LSAGDSGTFFCKGRQEEESRTVLHVLGDRADCRAPGPTH 119 (224)
T ss_pred hhcCCccceEecCcccccceeeeeeecccccccCCCCCC
Confidence 467999999999764 2222223334888999999883
No 202
>PF11049 KSHV_K1: Glycoprotein K1 of Kaposi's sarcoma-associated herpes virus; InterPro: IPR021022 This is a highly glycosylated cytoplasmic and membrane protein similar to the immunoglobulin receptor family that is expressed as an inducible early-lytic-cycle gene product in primary effusion lymphoma cell-lines. This domain would appear to be the cytoplasmic region of the protein [].
Probab=26.58 E-value=2.4e+02 Score=21.64 Aligned_cols=64 Identities=22% Similarity=0.334 Sum_probs=37.5
Q ss_pred eeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCCeeeEEEeee-----ec
Q psy10772 292 LSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGNTVLCTHNLT-----VD 366 (378)
Q Consensus 292 L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~~~l~~~~~~-----v~ 366 (378)
|.|.. .-+| ++.|+.|+.. | +..+..-|.+.. =++.+.|.-.....-|.=|+ |.
T Consensus 3 ltC~s--~~sL---PiswYcN~TR-----L-------lRlt~~Tlt~~~----ltcNFtCV~qSGh~hSiWItW~~qPVL 61 (71)
T PF11049_consen 3 LTCPS--NASL---PISWYCNGTR-----L-------LRLTQQTLTVVT----LTCNFTCVGQSGHRHSIWITWYAQPVL 61 (71)
T ss_pred eecCC--CCCC---cccEEECCce-----e-------eeecCCeEeeee----eeEEeeecCCCCCCceEEEEEcCchhh
Confidence 66753 3333 5899999864 3 123344454433 36899998876443343333 45
Q ss_pred ccccCCCCCC
Q psy10772 367 AHSNVADAPT 376 (378)
Q Consensus 367 ~~~c~~~~~~ 376 (378)
---|.||+-|
T Consensus 62 QTlCaQPSNT 71 (71)
T PF11049_consen 62 QTLCAQPSNT 71 (71)
T ss_pred hhhccCCCCC
Confidence 5568888754
No 203
>KOG4597|consensus
Probab=23.75 E-value=92 Score=32.72 Aligned_cols=69 Identities=19% Similarity=0.111 Sum_probs=44.4
Q ss_pred EEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCc---ceEe-ecCceEEeeecCCCCeEEEEEeCC
Q psy10772 282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDK---FIRT-VDGGLVIMAVEELDAGKYDCWLGN 355 (378)
Q Consensus 282 ~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~---~~~~-~~~GLlI~~v~~~DsG~Y~C~~~~ 355 (378)
..+..+.+..+.|-+-+.+ .+.|+|..+-.. |+.+..+++- +..+ ..--|+|-+....|+|.|.|.+.+
T Consensus 206 w~vg~wetcS~tCg~~G~q---~r~V~c~qv~an--r~~vv~~~nq~~e~p~vtstcql~ic~ewq~~a~w~tCs~rc 278 (560)
T KOG4597|consen 206 WFVGDWETCSSTCGVQGRQ---YRVVTCEQVFAN--RENVVMRPNQTVENPVVTSTCQLVICNEWQADAGWYTCSARC 278 (560)
T ss_pred hhcccchhhcccccccCCc---Cceeeeehhhcc--ccceeecCccccCCcceeeeeeEEEcchhhcCCCceeecccc
Confidence 4566788888999854333 357899554321 2223222221 2223 334499999999999999999987
No 204
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=23.70 E-value=1.7e+02 Score=23.41 Aligned_cols=29 Identities=28% Similarity=0.399 Sum_probs=19.6
Q ss_pred eCCeeeeeeeeccCCCCCCCCeEEEEecc
Q psy10772 286 WGQSVHLSCFVKLPASMANQPMSWYHYSK 314 (378)
Q Consensus 286 ~G~s~~L~C~~r~~~~La~~~v~W~~~~~ 314 (378)
.|+.+.|.|.+..-.-.+...|+|+.++.
T Consensus 13 ~~~~~tLtC~v~gf~yP~~i~v~W~r~~~ 41 (96)
T cd07696 13 LTKSVKLTCLVTNLTSPEGVNVTWTRGSG 41 (96)
T ss_pred cCCCeEEEEEEeCCCCCCCcEEEEEECCe
Confidence 37888999998744111223789999764
No 205
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=23.67 E-value=1.8e+02 Score=23.47 Aligned_cols=26 Identities=12% Similarity=0.299 Sum_probs=18.8
Q ss_pred CCeeeeeeeecc--CCCCCCCCeEEEEeccc
Q psy10772 287 GQSVHLSCFVKL--PASMANQPMSWYHYSKD 315 (378)
Q Consensus 287 G~s~~L~C~~r~--~~~La~~~v~W~~~~~~ 315 (378)
++.+.|.|.... |+.+ .|+|+.|+.+
T Consensus 16 ~~~~tL~C~a~gFyP~~I---~v~W~kng~~ 43 (96)
T cd07697 16 QGQGIYLCLLENFFPDVI---QVHWREGNSP 43 (96)
T ss_pred CCCEEEEEEEEEEeCCCe---EEEEEECCEE
Confidence 456789999874 4442 6899999764
No 206
>PHA03282 envelope glycoprotein E; Provisional
Probab=21.87 E-value=2.2e+02 Score=29.96 Aligned_cols=43 Identities=23% Similarity=0.283 Sum_probs=33.0
Q ss_pred CcceEeecCceEEeeecCCCCeEEEEEeCC-----eeeEEEeeeeccc
Q psy10772 326 DKFIRTVDGGLVIMAVEELDAGKYDCWLGN-----TVLCTHNLTVDAH 368 (378)
Q Consensus 326 ~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~-----~~l~~~~~~v~~~ 368 (378)
++|+-..+.-|+|.+++.+|+|.|.=.... ...++.-|.|.-.
T Consensus 116 ~~rvs~~n~tl~l~~a~~~DsG~Y~L~~~~~~~~~~~~~~v~l~V~p~ 163 (540)
T PHA03282 116 PPRVAVVNGTLVLREARETDSGMYVLSVSRAPNSTAARAVVFLVVGPR 163 (540)
T ss_pred CcceeEecceEEEeeccccCCceEEEEecCCCCchhheEEEEEEecCC
Confidence 456666677799999999999999998743 4456677777653
No 207
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=20.20 E-value=34 Score=35.55 Aligned_cols=41 Identities=27% Similarity=0.354 Sum_probs=0.0
Q ss_pred eecCceEEeeecCCCCeEEEEEeCC----eeeEEEeeeecccccC
Q psy10772 331 TVDGGLVIMAVEELDAGKYDCWLGN----TVLCTHNLTVDAHSNV 371 (378)
Q Consensus 331 ~~~~GLlI~~v~~~DsG~Y~C~~~~----~~l~~~~~~v~~~~c~ 371 (378)
....||.|.+++.+|+|.|.=...+ ...-++-|+|....-.
T Consensus 86 ~~~~~l~i~~a~~~~~GvY~l~~~~~~~~~~~~~~~v~v~~~~~~ 130 (439)
T PF02480_consen 86 FNKGGLSILNATEQDSGVYTLYVRNDSGWAHQSVVFVTVKGPAPD 130 (439)
T ss_dssp ---------------------------------------------
T ss_pred ecCCceEEeccccccCeeEEEEecCCCCceEEEEEEEEEcCCCcC
Confidence 3457899999999999999999876 4455588888887666
No 208
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=20.13 E-value=2.4e+02 Score=22.44 Aligned_cols=26 Identities=15% Similarity=0.507 Sum_probs=18.4
Q ss_pred CCeeeeeeeecc--CCCCCCCCeEEEEeccc
Q psy10772 287 GQSVHLSCFVKL--PASMANQPMSWYHYSKD 315 (378)
Q Consensus 287 G~s~~L~C~~r~--~~~La~~~v~W~~~~~~ 315 (378)
++.+.|.|.+.. |+. -.|+|+.++.+
T Consensus 14 ~~~~~L~C~a~gFyP~~---I~vtW~~dg~~ 41 (94)
T cd05847 14 SETIQLLCLISGYTPGT---IEVEWLVDGQV 41 (94)
T ss_pred CCCEEEEEEEEeEECCC---CEEEEEECCEE
Confidence 456789999874 322 37899988764
No 209
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=20.08 E-value=1.6e+02 Score=23.52 Aligned_cols=26 Identities=27% Similarity=0.540 Sum_probs=18.9
Q ss_pred CCeeeeeeeecc--CCCCCCCCeEEEEeccc
Q psy10772 287 GQSVHLSCFVKL--PASMANQPMSWYHYSKD 315 (378)
Q Consensus 287 G~s~~L~C~~r~--~~~La~~~v~W~~~~~~ 315 (378)
++.+.|.|..+. |.. -.|+|+.++.+
T Consensus 16 ~~~~~L~C~a~gFyP~~---i~vtW~k~g~~ 43 (95)
T cd04985 16 SDSVTLGCLATGFLPEP---VTFTWNSGSNS 43 (95)
T ss_pred CCcEEEEEEEeeEECCC---cEEEEeECCEE
Confidence 556889999985 333 26899998764
Done!