RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10772
(378 letters)
>3nvx_A Protein A39; beta-propeller, viral protein; HET: NAG; 2.00A
{Vaccinia virus} PDB: 3nvn_A*
Length = 383
Score = 203 bits (516), Expect = 4e-62
Identities = 51/244 (20%), Positives = 95/244 (38%), Gaps = 26/244 (10%)
Query: 30 YDNCLQPDFVGSYDIGKYVFFFFRETAVEYINCGKSVFSRVARVCKRDTGGKNILSQN-W 88
+ L+ FV V+ F +T +A++C D GG + LS + W
Sbjct: 141 PKDGLRGAFVDKDGTYDKVYILFTDTIGSK---RIVKIPYIAQMCLNDEGGPSSLSSHRW 197
Query: 89 ATYLKARLNCSIPGEFPFYFNEIQDIYKVPGDDTKFYGVFTTSTTGLMGSAICSFSIEDI 148
+T+LK L C I G Y I +DT Y F + + SA+C++S+ I
Sbjct: 198 STFLKVELECDIDGRS--YRQIIHSRTIKTDNDTILYVFFDSPYSK---SALCTYSMNTI 252
Query: 149 ERAFVGKFKEQATSTSAWLPVLSSRVPEPRPGQCVNDTETLPDSVLNFIRSHPLMDEAVA 208
+++F E + ++P P PG C+ + + + I + ++D+ +
Sbjct: 253 KQSFSTSKLEG----------YTKQLPSPAPGICLPAGKVVSHTTFEVIEKYNVLDDIIK 302
Query: 209 HRDNKPVFYRRDLLFTHLVVDVVQYEVFGTTSEYIVYFAATTTLRTVFVKVRLLQDVSNT 268
N+P+F + + EY +YF ++ + + Q S+
Sbjct: 303 PLSNQPIFEGPS-GVKWFDIKEKE----NEHREYRIYFIKENSIYS--FDTKSKQTRSSQ 355
Query: 269 SDSI 272
D+
Sbjct: 356 VDAR 359
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A
{Mus musculus} SCOP: b.69.12.1
Length = 495
Score = 189 bits (479), Expect = 1e-55
Identities = 89/259 (34%), Positives = 134/259 (51%), Gaps = 27/259 (10%)
Query: 35 QPDFVGSYDI-------GKYVFFFFRETAVEYINCGKSVFSRVARVCKRDTGGKNILSQN 87
P F+ ++ I V+FFFRE A++ + GK+ +R+ ++CK D GG L
Sbjct: 198 DPRFISAHLIPESDNPEDDKVYFFFRENAIDGEHSGKATHARIGQICKNDFGGHRSLVNK 257
Query: 88 WATYLKARLNCSIPGE--FPFYFNEIQDIYKVPGDD---TKFYGVFTTSTTGLMGSAICS 142
W T+LKARL CS+PG +F+E+QD++ + D YGVFTTS+ GSA+C
Sbjct: 258 WTTFLKARLICSVPGPNGIDTHFDELQDVFLMNSKDPKNPIVYGVFTTSSNIFKGSAVCM 317
Query: 143 FSIEDIERAFVGKFKEQATSTSAWLPVLSSRVPEPRPGQC-------VNDTETLPDSVLN 195
+S+ D+ R F+G + + W+P RVP PRPG C + T+ LPD V+
Sbjct: 318 YSMSDVRRVFLGPYAHRDGPNYQWVPY-QGRVPYPRPGTCPSKTFGGFDSTKDLPDDVIT 376
Query: 196 FIRSHPLMDEAVAHRDNKPVFYRRDLL--FTHLVVDVVQYEVFGTTSEYIVYFAATTTLR 253
F RSHP M V +N+P+ + D+ FT +VVD V +Y V F T
Sbjct: 377 FARSHPAMYNPVFPINNRPIMIKTDVNYQFTQIVVDRVD----AEDGQYDVMFIGTDV-G 431
Query: 254 TVFVKVRLLQDVSNTSDSI 272
TV V + ++ + + +
Sbjct: 432 TVLKVVSVPKETWHDLEEV 450
Score = 33.8 bits (76), Expect = 0.098
Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 1 MEISRTHRSLYVASDERIKQIALVMCAHRY 30
ME+S + LY+ S + Q+ L C Y
Sbjct: 467 MELSTKQQQLYIGSTAGVAQLPLHRC-DIY 495
>3oky_B Putative uncharacterized protein; transmembrane, ligand,
SEMA-domain, cell-CELL signalling, SI protein; HET: NAG;
2.19A {Mus musculus} PDB: 3okw_A* 3afc_A* 3al8_A*
Length = 565
Score = 188 bits (477), Expect = 1e-54
Identities = 94/228 (41%), Positives = 126/228 (55%), Gaps = 13/228 (5%)
Query: 35 QPDFVGSYDIGKYVFFFFRETAVEYINCGKSVFSRVARVCKRDTGG-KNILSQNWATYLK 93
+P FV + D G Y++FFFRE AVEY GK VF RVA+VCK D GG + +L + W ++LK
Sbjct: 204 EPYFVQAVDYGDYIYFFFREIAVEYNTMGKVVFPRVAQVCKNDMGGSQRVLEKQWTSFLK 263
Query: 94 ARLNCSIPGEFPFYFNEIQDIYKVPGD--DTKFYGVFTTSTTGLMGSAICSFSIEDIERA 151
ARLNCS+PG+ FYFN +Q + V F+T + GSA+C++ + DI
Sbjct: 264 ARLNCSVPGDSHFYFNILQAVTDVIRINGRDVVLATFSTPYNSIPGSAVCAYDMLDIANV 323
Query: 152 FVGKFKEQATSTSAWLPVLSSRVPEPRPGQCVND--------TETLPDSVLNFIRSHPLM 203
F G+FKEQ + S W PV RVP+PRPG C + PD LNFI++HPLM
Sbjct: 324 FTGRFKEQKSPDSTWTPVPDERVPKPRPGCCAGSSSLEKYATSNEFPDDTLNFIKTHPLM 383
Query: 204 DEAVAHRDNKPVFYRRDLLFTHLVVDVVQYEVFGTTSEYIVYFAATTT 251
DEAV N+P F R + + + V G + V F +
Sbjct: 384 DEAVPSIINRPWFLRTMVRYRLTKIAV--DNAAGPYQNHTVVFLGSEK 429
Score = 32.4 bits (72), Expect = 0.29
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 1 MEISRTHRSLYVASDERIKQIALVMCAHRYDNC 33
M++ R SLYVA + ++ L C
Sbjct: 475 MQLDRASGSLYVAFSTCVIKVPLGRCERHGKCK 507
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI
domain, IG-like domain, extracellular receptor,
neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4
b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Length = 663
Score = 182 bits (461), Expect = 7e-52
Identities = 73/223 (32%), Positives = 114/223 (51%), Gaps = 26/223 (11%)
Query: 35 QPDFVGSYDI----------GKYVFFFFRETAVEYINCGKSVFSRVARVCKRDTGGKNIL 84
+P FV + I V+FFF E +VEY + + R+ARVCK D GG L
Sbjct: 187 EPSFVFADVIRKSPDSPDGEDDRVYFFFTEVSVEYEFVFRVLIPRIARVCKGDQGGLRTL 246
Query: 85 SQNWATYLKARLNCSIPGEFPFYFNEIQDIYKVP---GDDTKFYGVFTTSTTGLMGSAIC 141
+ W ++LKARL CS P FN ++D++ + FY +FT + SA+C
Sbjct: 247 QKKWTSFLKARLICSRPDS-GLVFNVLRDVFVLRSPGLKVPVFYALFTPQLNNVGLSAVC 305
Query: 142 SFSIEDIERAFV-GKFKEQATSTSAWLPVL--SSRVPEPRPGQCVND---------TETL 189
++++ E F GK+ + T + + + VP+PRPG C++ + L
Sbjct: 306 AYNLSTAEEVFSHGKYMQSTTVEQSHTKWVRYNGPVPKPRPGACIDSEARAANYTSSLNL 365
Query: 190 PDSVLNFIRSHPLMDEAVAHRDNKPVFYRRDLLFTHLVVDVVQ 232
PD L F++ HPLMD++V DN+P ++D+ +T +VVD Q
Sbjct: 366 PDKTLQFVKDHPLMDDSVTPIDNRPRLIKKDVNYTQIVVDRTQ 408
Score = 43.2 bits (100), Expect = 1e-04
Identities = 16/85 (18%), Positives = 26/85 (30%), Gaps = 9/85 (10%)
Query: 268 TSDSICESSVGRLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDK 327
S +S + G + L C + W + +K S K
Sbjct: 529 ASVCPDKSKGSYRQHFFKHGGTAELKC----SQKSNLARVFWKFQNGV-----LKAESPK 579
Query: 328 FIRTVDGGLVIMAVEELDAGKYDCW 352
+ L+I + E D+G Y C
Sbjct: 580 YGLMGRKNLLIFNLSEGDSGVYQCL 604
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein
binding; HET: NAG NDG; 2.40A {Homo sapiens}
Length = 590
Score = 164 bits (414), Expect = 1e-45
Identities = 55/229 (24%), Positives = 95/229 (41%), Gaps = 24/229 (10%)
Query: 36 PDFVGSYDI------GKYVFFFFRETAVEYINCGKSVFSRVARVCKRDTGGKNILS-QNW 88
P F+ + + +++FFRE + SRVA++C+ D GG++ LS W
Sbjct: 178 PQFIKATIVHQDQAYDDKIYYFFREDNPDKNPEAPLNVSRVAQLCRGDQGGESSLSVSKW 237
Query: 89 ATYLKARLNCSIPGEFPFYFNEIQDIYKVPG--DDTKFYGVFTTSTTGLMGSAICSFSIE 146
T+LKA L CS FN +QD++ +P + V+ + SA+C +S+
Sbjct: 238 NTFLKAMLVCSDAAT-NKNFNRLQDVFLLPDPSGQWRDTRVYGVFSNPWNYSAVCVYSLG 296
Query: 147 DIERAFVGKFKEQATSTSAWLPVLSSRVPEPRPGQCVNDTETLPDSVLNFIRSHPLMDEA 206
DI++ F ++ L S +P PRPG+C+ D + +P HP + +
Sbjct: 297 DIDKVF----------RTSSLKGYHSSLPNPRPGKCLPDQQPIPTETFQVADRHPEVAQR 346
Query: 207 VAHRDNKPVF-YRRDLLFTHLVVDVVQYEVFGTTSEYIVYFAATTTLRT 254
V + + + V +Q T + V + T
Sbjct: 347 VEPMGPLKTPLFHSKYHYQKVAVHRMQASHGET---FHVLYLTTDRGTI 392
Score = 40.0 bits (92), Expect = 0.001
Identities = 13/67 (19%), Positives = 20/67 (29%), Gaps = 10/67 (14%)
Query: 286 WGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELD 345
+LSC P + SW H + + +S + L I +
Sbjct: 514 PNSRYYLSC----PMESRHATYSWRHKENVEQSCEPGHQSP------NCILFIENLTAQQ 563
Query: 346 AGKYDCW 352
G Y C
Sbjct: 564 YGHYFCE 570
>3ol2_B Plexin-B1; beta-propeller, signalling, extacellular, signaling
protein; HET: NAG BMA; 2.99A {Homo sapiens}
Length = 528
Score = 129 bits (324), Expect = 2e-33
Identities = 29/211 (13%), Positives = 66/211 (31%), Gaps = 24/211 (11%)
Query: 35 QPDFVGSYDIGKYVFFFFRETAVEYINCGKSVFSRVARVCKRDTGGKNILSQNWATYLKA 94
FV ++ G +F F ++ ++ + V+RVC RD Q++ +Y++
Sbjct: 199 SHHFVSAFARGASAYFLFLRRDLQAQ--SRAFRAYVSRVCLRD--------QHYYSYVEL 248
Query: 95 RLNCSIPGEFPFYFNEIQDIYKVPGDDTKFYGVFTTSTTGLMG------------SAICS 142
L C + + + F+++ +G SA+C+
Sbjct: 249 PLACEGG-RYGLIQAAAVATSREVAHGEVLFAAFSSAAPPTVGRPPSAAAGASGASALCA 307
Query: 143 FSIEDIERAFVGKFKEQATSTSAWLPVL-SSRVPEPRPGQCVNDTETLPDSVLNFIRSHP 201
F +++++R T + + C D+ P
Sbjct: 308 FPLDEVDRLANRTRDACYTREGRAEDGTEVAYIEYDVNSDCAQLPVDTLDAYPCGSDHTP 367
Query: 202 LMDEAVAHRDNKPVFYRRDLLFTHLVVDVVQ 232
+ + P+ + T + V +
Sbjct: 368 SPMASRVPLEATPILEWPGIQLTAVAVTMED 398
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein;
HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Length = 539
Score = 127 bits (320), Expect = 9e-33
Identities = 38/294 (12%), Positives = 79/294 (26%), Gaps = 46/294 (15%)
Query: 36 PDFVGSYDIGKYVFFFFRETAVEY----INCGKSVF-SRVARVCKRDTGGKNILSQNWAT 90
++ + G +V+F + + G + SR+ R+CK D + +
Sbjct: 211 IFYIYGFASGGFVYFLTVQPETPDGMAINSAGDLFYTSRIVRLCKDD--------PKFHS 262
Query: 91 YLKARLNCSIPGEFPFYFNEIQDIY------------KVPGDDTKFYGVFTTSTTGLMG- 137
Y+ C+ G + +Q Y + D+ + +F+
Sbjct: 263 YVSLPFGCTRAG---VEYRLLQAAYLAKPGEALAQAFNISSDEDVLFAIFSKGQKQYHHP 319
Query: 138 ---SAICSFSIEDIERAFVGKFKEQATSTSAWLPVLSSRVPEPRPGQCVNDTETLPDSVL 194
SA+C+F I I + + + QC + D+
Sbjct: 320 PDDSALCAFPIRAINLQIKERLQSCYHGEGNL----ELNWLLGKDVQCTKAPVPIDDNFC 375
Query: 195 NFIRSHPLMDEAVAHRDNKPVFYRRDLLFTHLVVDVVQYEVFGTTSEYIVYFAATTTLRT 254
+ PL ++ T + V Y V F T + +
Sbjct: 376 GLDINQPLGGSTPVEG--LTLYTTSRDRLTSVASYVYN--------GYSVVFVGTKSGKL 425
Query: 255 VFVKVRLLQDVSNTSDSICESSVGRLKQTVTWGQSVHLSCFVKLPASMANQPMS 308
++ + + G L +V + P+
Sbjct: 426 KKIRADGPPHGGVQYEMVSVFKDGSPILRDMAFSINQLYLYVMSERQVTRVPVE 479
Score = 28.8 bits (63), Expect = 3.2
Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 1 MEISRTHRSLYVASDERIKQIALVMCAHRYDNC 33
M S LYV S+ ++ ++ + C +Y C
Sbjct: 456 MAFSINQLYLYVMSERQVTRVPVESC-EQYTTC 487
>4fww_A Macrophage-stimulating protein receptor; beta-propeller,
cysteine-knot, receptor tyrosine kinase, MAC stimulating
protein, N-glycosylation; HET: NAG BMA; 1.85A {Homo
sapiens}
Length = 527
Score = 127 bits (319), Expect = 1e-32
Identities = 36/221 (16%), Positives = 68/221 (30%), Gaps = 34/221 (15%)
Query: 36 PDFVGSYDIGKYVFFFFRETAVEYINCGKSVFSRVARVCKRDTGGKNILSQNWATYLKAR 95
++V S+ G +V+F + A + ++ +R+AR+ + Y +
Sbjct: 206 IEYVHSFHTGAFVYFLTVQPASVT-DDPSALHTRLARLSATEPE--------LGDYRELV 256
Query: 96 LNCSIP--------GEFPFYFNEIQDIY------------KVPGDDTKFYGVFTTSTTGL 135
L+C E + +Q + + +GVF T G
Sbjct: 257 LDCRFAPKLVPRGSPEGGQPYPVLQVAHSAPVGAQLATELSIAEGQEVLFGVFVTGKDGG 316
Query: 136 MG----SAICSFSIEDIERAFVGKFKEQATSTSAWLPVLSSRVPEPRPGQCVNDTETLPD 191
G S +C+F I+ ++ + S + P C N
Sbjct: 317 PGVGPNSVVCAFPIDLLDTLIDEGVERCCESPVHP-GLRRGLDFFQSPSFCPNPPGLEAL 375
Query: 192 SVLNFIRSHPLMDEAVAHRDNKPVFYRRDLLFTHLVVDVVQ 232
S R PL+ + R + + T L V +
Sbjct: 376 SPNTSCRHFPLLVSSSFSRVDLFNGLLGPVQVTALYVTRLD 416
>3oky_A Plexin-A2; transmembrane, ligand, SEMA-domain, cell-CELL
signalling, SI protein; HET: NAG; 2.19A {Mus musculus}
PDB: 3okt_A*
Length = 681
Score = 127 bits (318), Expect = 3e-32
Identities = 38/295 (12%), Positives = 79/295 (26%), Gaps = 46/295 (15%)
Query: 35 QPDFVGSYDIGKYVFFFFRETAVE----YINCGKSVF-SRVARVCKRDTGGKNILSQNWA 89
++ + G +V+F + + G + SR+ R+CK D +
Sbjct: 209 DIFYIYGFASGGFVYFLTVQPETPDGMAINSAGDLFYTSRIVRLCKDD--------PKFH 260
Query: 90 TYLKARLNCSIPGEFPFYFNEIQDIY------------KVPGDDTKFYGVFTTSTTGLM- 136
+Y+ C+ G + +Q Y + D+ + +F+
Sbjct: 261 SYVSLPFGCTRAG---VEYRLLQAAYLAKPGEALAQAFNISSDEDVLFAIFSKGQKQYHH 317
Query: 137 ---GSAICSFSIEDIERAFVGKFKEQATSTSAWLPVLSSRVPEPRPGQCVNDTETLPDSV 193
SA+C+F I I + + + QC + D+
Sbjct: 318 PPDDSALCAFPIRAINLQIKERLQSCYHGEGNL----ELNWLLGKDVQCTKAPVPIDDNF 373
Query: 194 LNFIRSHPLMDEAVAHRDNKPVFYRRDLLFTHLVVDVVQYEVFGTTSEYIVYFAATTTLR 253
+ PL ++ T + V Y V F T + +
Sbjct: 374 CGLDINQPLGGSTPVEG--LTLYTTSRDRLTSVASYVYN--------GYSVVFVGTKSGK 423
Query: 254 TVFVKVRLLQDVSNTSDSICESSVGRLKQTVTWGQSVHLSCFVKLPASMANQPMS 308
++ + + G L +V + P+
Sbjct: 424 LKKIRADGPPHGGVQYEMVSVFKDGSPILRDMAFSINQLYLYVMSERQVTRVPVE 478
>2uzx_B Hepatocyte growth factor receptor; signaling protein/receptor,
leucine rich repeat, receptor ectodomain, signaling
protein, ATP-binding; 2.8A {Homo sapiens} PDB: 2uzy_B
1shy_B 1ssl_A
Length = 727
Score = 109 bits (273), Expect = 2e-26
Identities = 32/238 (13%), Positives = 65/238 (27%), Gaps = 47/238 (19%)
Query: 36 PDFVGSYDIGKYVFFFFRETAVEYINCGKSVFSRVARVCKRDTGGKNILSQNWATYLKAR 95
+V +++ +++F + ++ +R+ R C + +Y++
Sbjct: 226 IKYVHAFESNNFIYFLTVQRETL---DAQTFHTRIIRFCSIN--------SGLHSYMEMP 274
Query: 96 LNCSI------PGEFPFYFNEIQDIY------------KVPGDDTKFYGVFTT----STT 133
L C + FN +Q Y +D + VF S
Sbjct: 275 LECILTEKRKKRSTKKEVFNILQAAYVSKPGAQLARQIGASLNDDILFAVFAQSKPDSAE 334
Query: 134 GLMGSAICSFSIEDIERAFVGKFKEQATSTSAWLPVLSSRVPEPRPGQCVNDTETLPDSV 193
+ SA+C+F I+ + F + P C N T L +S
Sbjct: 335 PMDRSAMCAFPIKYVNDFFNKIVNKNNVRCLQHFYG-------PNHEHCFNRT-LLRNSS 386
Query: 194 LNFIRSHPLMDEAVAHRDNKPVFYRRDLLFTHLVVDVVQYEVFGTTSEYIVYFAATTT 251
R E +F + + + + T+
Sbjct: 387 GCEARRDEYRTEFTTALQRVDLFMGQFSEVLLTSISTF------IKGDLTIANLGTSE 438
>3nvn_B Plexin-C1; beta-propeller, signaling, viral protein-signaling
protein C; HET: NDG NAG; 2.26A {Homo sapiens} PDB:
3nvq_B*
Length = 476
Score = 90.8 bits (224), Expect = 4e-20
Identities = 19/123 (15%), Positives = 39/123 (31%), Gaps = 20/123 (16%)
Query: 36 PDFVGSYDIGKYVFFFFRETAVEYINCGKSVFSRVARVCKRDTGGKNILSQNWATYLKAR 95
FV ++ ++F + Y + + + +AR+ + +A
Sbjct: 198 LHFVDAFLWNGSIYFPYYP--YNYTSGAATGWPSMARIAQST---------EVLFQGQAS 246
Query: 96 LNCSIPGEFPFYFNEIQDIYKVPGDDTKFYGVF------TTSTTGLMGSAICSFSIEDIE 149
L+C P + V D + GVF +A+C F + +I+
Sbjct: 247 LDCGHGH--PDGRRLLLSSSLVEALDV-WAGVFSAAAGEGQERRSPTTTALCLFRMSEIQ 303
Query: 150 RAF 152
Sbjct: 304 ARA 306
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 64.3 bits (156), Expect = 3e-11
Identities = 74/487 (15%), Positives = 137/487 (28%), Gaps = 167/487 (34%)
Query: 11 YVASDERIKQIALVMCAHRY----DNCLQPDFVGSYD-IGKYVFFFFRETAVEYINCGKS 65
+ A DE LV ++ + ++P VG +D + F Y+ G
Sbjct: 48 FAADDEPTTPAELVG---KFLGYVSSLVEPSKVGQFDQVLNLCLTEFENC---YL-EGND 100
Query: 66 VFSRVARVCKRDTGG----KNILSQNWATYLKARLNCSIP---------------GEFPF 106
+ + A++ + + K ++ Y+ AR+ P G
Sbjct: 101 IHALAAKLLQENDTTLVKTKELIK----NYITARIMAKRPFDKKSNSALFRAVGEGNAQL 156
Query: 107 ------------YFNEIQDIYKVPGDDTKFYGVFTTSTTGLMGSAICSFS--IEDIERAF 152
YF E++D+Y+ Y V + D E+ F
Sbjct: 157 VAIFGGQGNTDDYFEELRDLYQT-------YHVLVGDLIKFSAETLSELIRTTLDAEKVF 209
Query: 153 VGKFKEQATSTSAWLPVLSSRVPEPRPG-----------------QCVNDTETL------ 189
Q + WL P P Q + T
Sbjct: 210 -----TQGLNILEWL-----ENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFT 259
Query: 190 PDSVLNFIRS---HP---LMDEAVAHRDNKPVFYRRDLLFTHLVVDVVQYEVFGTTSEYI 243
P + ++++ H + A+A D+ F+ V + +F +I
Sbjct: 260 PGELRSYLKGATGHSQGLVTAVAIAETDSWESFFV-------SVRKAITV-LF-----FI 306
Query: 244 VYFAATTTLRTVFVKVRLLQD--------------VSNTSDSICESSVGRLKQTVTWGQS 289
+ +L+D +SN + + V + + G+
Sbjct: 307 GV-RCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQ 365
Query: 290 VHLS------CFVKLPASMANQPMSWY----HYSKDK---GRYQ--IKFRSDKFIRTVDG 334
V +S V ++ P S Y K K G Q I F K ++ +
Sbjct: 366 VEISLVNGAKNLV-----VSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERK-LKFSNR 419
Query: 335 GLVIM----------AVEEL--DAGKYDC-W----LGNTVLCTHN------LTVDAHSNV 371
L + A + + D K + + + V T + L+ +
Sbjct: 420 FLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERI 479
Query: 372 ADAPTRL 378
D RL
Sbjct: 480 VDCIIRL 486
Score = 28.9 bits (64), Expect = 3.6
Identities = 51/333 (15%), Positives = 93/333 (27%), Gaps = 122/333 (36%)
Query: 25 MCAHRYDNCLQPDFVGSYDIGKYVF----FFFRETAVEYINCGKSVFSRVARVCKRDT-- 78
M Y + V+ F++T Y G S+ V T
Sbjct: 1631 MGMDLYKT---------SKAAQDVWNRADNHFKDT---Y---GFSILDIVINNPVNLTIH 1675
Query: 79 ----GGKNI----LSQNWATYLKARLNC-SIPGEFPFYFNEIQDIYKVPGDD---TKFY- 125
GK I + + T + +L I E + ++ T+F
Sbjct: 1676 FGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSY--TFRSEKGLLSATQFTQ 1733
Query: 126 -GVFTTS--------TTGLM-----------G--SAICS----FSIEDI-----ERAFVG 154
+ + GL+ G +A+ S SIE + R G
Sbjct: 1734 PALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYR---G 1790
Query: 155 KFKEQATSTSAWLPVLSSRVPEPRPGQCVNDTETLPDSVLNFIRSHPLMDEAVAHRDNKP 214
+ A L + + PG+ + L ++ E V R
Sbjct: 1791 MTMQVAVPRDE-LGRSNYGMIAINPGRVA---ASFSQEALQYV------VERVGKR---- 1836
Query: 215 VFYRRDLLFTHLVVDVVQYEVFGTTSEYIVYFAATTTLRTVFVKVRLLQDVSNTSDSICE 274
T +V++V Y V Y+ A +R L V+N + I
Sbjct: 1837 ---------TGWLVEIVNYNVENQQ--YVA--AGD---------LRALDTVTNVLNFI-- 1872
Query: 275 SSVGRLKQTVTWGQSVHLSCFVKLPASMANQPM 307
+ ++ ++L S++ + +
Sbjct: 1873 -KLQKID-------------IIELQKSLSLEEV 1891
>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 103
Score = 50.4 bits (121), Expect = 3e-08
Identities = 27/89 (30%), Positives = 38/89 (42%), Gaps = 14/89 (15%)
Query: 282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGG---LVI 338
Q V G+ V L C + S A P+ W K R I+ +S K+ +G LVI
Sbjct: 18 QWVAPGEDVELRCEL----SRAGTPVHWL-----KDRKAIR-KSQKYDVVCEGTMAMLVI 67
Query: 339 MAVEELDAGKYDCWLGNTVLCTHNLTVDA 367
DAG+Y C + T +L V+
Sbjct: 68 RGASLKDAGEYTCEVEA-SKSTASLHVEE 95
>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2edl_A
2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A
Length = 108
Score = 48.1 bits (115), Expect = 2e-07
Identities = 22/89 (24%), Positives = 34/89 (38%), Gaps = 15/89 (16%)
Query: 282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGG---LVI 338
+ + G + L C + A P+ W KG ++ ++ DG L I
Sbjct: 18 KEASEGATATLQCELSKVA-----PVEWK-----KGPETLR-DGGRYSLKQDGTRCELQI 66
Query: 339 MAVEELDAGKYDCWLGNTVLCTHNLTVDA 367
+ DAG+Y C G + LTV A
Sbjct: 67 HDLSVADAGEYSCMCGQER-TSATLTVRA 94
>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 47.4 bits (113), Expect = 3e-07
Identities = 23/93 (24%), Positives = 31/93 (33%), Gaps = 13/93 (13%)
Query: 277 VGRLK-QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGG 335
RLK V G+S C L A+ P W G + S +F T G
Sbjct: 12 TKRLKTMEVLEGESCSFEC--VLSHESASDPAMWT-----VGGKTVGS-SSRFQATRQGR 63
Query: 336 ---LVIMAVEELDAGKYDCWLGNTVLCTHNLTV 365
LV+ DAG+ + +L V
Sbjct: 64 KYILVVREAAPSDAGEVVFSVRGLT-SKASLIV 95
>3cx2_A Myosin-binding protein C, cardiac-type; protonation states,
actin-binding, cardiomyopathy, cell adhesion, disease
mutation, immunoglobulin domain; 1.30A {Homo sapiens}
PDB: 2v6h_A 2avg_A
Length = 108
Score = 47.3 bits (112), Expect = 4e-07
Identities = 20/94 (21%), Positives = 30/94 (31%), Gaps = 9/94 (9%)
Query: 282 QTVTWGQSVHLSCFVKLPASMANQPMSWYH------YSKDKGRYQIKFRSDKFIRTVDGG 335
VT G S+ S V + + + W+ SK Q+ D+ +
Sbjct: 14 GEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFE 73
Query: 336 LVIMAVEELDAGKYDCWLGN---TVLCTHNLTVD 366
L I + G Y C + NLTV
Sbjct: 74 LHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTVH 107
>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 126
Score = 47.7 bits (113), Expect = 4e-07
Identities = 20/99 (20%), Positives = 36/99 (36%), Gaps = 13/99 (13%)
Query: 282 QTVTWGQSVHLSCFVK-LPASMANQPM-SWYH------YSKDKGRYQIKFRSDKFIRTVD 333
TV G+ + VK + +P W+ SK Q+K ++ R
Sbjct: 17 GTVKVGEDITFIAKVKAED--LLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYT 74
Query: 334 GGLVIMAVEELDAGKYDCWLGN---TVLCTHNLTVDAHS 369
+ I+ ++ AG Y C + C+ +L V +
Sbjct: 75 FEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHEST 113
>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW-
type/skeletal muscle SLOW-isoform, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Length = 103
Score = 46.9 bits (112), Expect = 4e-07
Identities = 20/93 (21%), Positives = 32/93 (34%), Gaps = 16/93 (17%)
Query: 282 QTVTWGQSVHLSCFVKLPASMANQPMSWYH-----YSKDKGRYQIKFRSDKFIRTVDGGL 336
T G+ V L C V + + W+ K RY+I+ + L
Sbjct: 17 TTAYCGERVELECEVSEDDA----NVKWFKNGEEIIPGPKSRYRIR--VEGKKHI----L 66
Query: 337 VIMAVEELDAGKYDCWLGNTVLCTHNLTVDAHS 369
+I + DA +Y + L+VD S
Sbjct: 67 IIEGATKADAAEYSVMTTGGQ-SSAKLSVDLKS 98
>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} PDB: 2yz8_A
Length = 103
Score = 46.2 bits (110), Expect = 7e-07
Identities = 22/89 (24%), Positives = 35/89 (39%), Gaps = 14/89 (15%)
Query: 282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGG---LVI 338
V G + L C + S P+ W G ++ DK+ +G LV+
Sbjct: 18 LEVLEGGAATLRCVL----SSVAAPVKWC-----YGNNVLR-PGDKYSLRQEGAMLELVV 67
Query: 339 MAVEELDAGKYDCWLGNTVLCTHNLTVDA 367
+ D+G+Y C G+ + LTV A
Sbjct: 68 RNLRPQDSGRYSCSFGDQT-TSATLTVTA 95
>2edh_A Obscurin; structural genomics, NPPSFA, national project on P
structural and functional analyses, riken structural
genomics/proteomics initiative; NMR {Homo sapiens}
Length = 113
Score = 46.2 bits (110), Expect = 8e-07
Identities = 24/89 (26%), Positives = 35/89 (39%), Gaps = 15/89 (16%)
Query: 282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGG---LVI 338
+ T G + L C + A P+ W+ KG ++ D+ DG L I
Sbjct: 29 EEATEGATAVLRCELSKMA-----PVEWW-----KGHETLR-DGDRHSLRQDGARCELQI 77
Query: 339 MAVEELDAGKYDCWLGNTVLCTHNLTVDA 367
+ DAG+Y C G + LTV A
Sbjct: 78 RGLVAEDAGEYLCMCGKER-TSAMLTVRA 105
>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498;
beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 102
Score = 45.9 bits (109), Expect = 9e-07
Identities = 21/89 (23%), Positives = 31/89 (34%), Gaps = 14/89 (15%)
Query: 282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGG---LVI 338
G S LSC V + ++WY K ++ S K G LV+
Sbjct: 21 VQAEAGASATLSCEVAQAQT----EVTWY-----KDGKKLS-SSSKVRVEAVGCTRRLVV 70
Query: 339 MAVEELDAGKYDCWLGNTVLCTHNLTVDA 367
+ +AG+Y C G + L V
Sbjct: 71 QQAGQAEAGEYSCEAGGQQ-LSFRLQVAG 98
>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2;
IG domain, structural protein; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 104
Score = 45.4 bits (108), Expect = 2e-06
Identities = 18/87 (20%), Positives = 29/87 (33%), Gaps = 13/87 (14%)
Query: 282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGG---LVI 338
V+ G + L+ + + + W K +I+ K+I G L I
Sbjct: 26 YQVSKGHKIRLTVELADHDA----EVKWL-----KNGQEIQMSGSKYIFESIGAKRTLTI 76
Query: 339 MAVEELDAGKYDCWLGNTVLCTHNLTV 365
D Y C +G C+ L V
Sbjct: 77 SQCSLADDAAYQCVVGGEK-CSTELFV 102
>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding
protein C, immunoglobulin domain, structural genomics,
NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A
Length = 100
Score = 45.1 bits (107), Expect = 2e-06
Identities = 20/90 (22%), Positives = 30/90 (33%), Gaps = 14/90 (15%)
Query: 281 KQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGG---LV 337
V G V + P + WY K +I+ S K+I G L
Sbjct: 17 AYQVDKGGRVRFVVELADPKL----EVKWY-----KNGQEIRP-STKYIFEHKGCQRILF 66
Query: 338 IMAVEELDAGKYDCWLGNTVLCTHNLTVDA 367
I + D +Y G+ C+ L V +
Sbjct: 67 INNCQMTDDSEYYVTAGDEK-CSTELFVRS 95
>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 103
Score = 45.0 bits (107), Expect = 2e-06
Identities = 20/89 (22%), Positives = 35/89 (39%), Gaps = 14/89 (15%)
Query: 282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGG---LVI 338
V + +C + PA+ ++W KG +++ S K + +G L I
Sbjct: 18 LQVEEKGTAVFTCKTEHPAA----TVTWR-----KGLLELR-ASGKHQPSQEGLTLRLTI 67
Query: 339 MAVEELDAGKYDCWLGNTVLCTHNLTVDA 367
A+E+ D+ Y C +G L V
Sbjct: 68 SALEKADSDTYTCDIGQAQ-SRAQLLVQG 95
>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 113
Score = 45.1 bits (107), Expect = 2e-06
Identities = 17/89 (19%), Positives = 34/89 (38%), Gaps = 14/89 (15%)
Query: 282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGG---LVI 338
+ V L+C + P + + W K ++ S + + LV+
Sbjct: 23 VAAVRLERVVLTCELCRPWA----EVRWT-----KDGEEVV-ESPALLLQKEDTVRRLVL 72
Query: 339 MAVEELDAGKYDCWLGNTVLCTHNLTVDA 367
AV+ D+G+Y C + + + +TV
Sbjct: 73 PAVQLEDSGEYLCEIDDES-ASFTVTVTE 100
>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac
muscle, hypertrophic cardiomyopathy, actin-binding, cell
adhesion, disease mutation; NMR {Homo sapiens}
Length = 95
Score = 44.6 bits (106), Expect = 2e-06
Identities = 16/87 (18%), Positives = 26/87 (29%), Gaps = 14/87 (16%)
Query: 282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGG---LVI 338
V G + + W +G I S+K+ +G L +
Sbjct: 18 VEVAAGSPAVFEAETERA----GVKVRWQ-----RGGSDISA-SNKYGLATEGTRHTLTV 67
Query: 339 MAVEELDAGKYDCWLGNTVLCTHNLTV 365
V D G Y G++ +L V
Sbjct: 68 REVGPADQGSYAVIAGSSK-VKFDLKV 93
>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 104
Score = 44.7 bits (106), Expect = 3e-06
Identities = 19/87 (21%), Positives = 38/87 (43%), Gaps = 14/87 (16%)
Query: 282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGG---LVI 338
T T + V L+C + S + P +WY K +++ S+ + +DG L++
Sbjct: 20 LTFTTSERVVLTCEL----SRVDFPATWY-----KDGQKVE-ESELLVVKMDGRKHRLIL 69
Query: 339 MAVEELDAGKYDCWLGNTVLCTHNLTV 365
+ D+G+++C +TV
Sbjct: 70 PEAKVQDSGEFECRTEGVS-AFFGVTV 95
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex,
beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo
sapiens}
Length = 339
Score = 47.0 bits (111), Expect = 4e-06
Identities = 18/104 (17%), Positives = 34/104 (32%), Gaps = 4/104 (3%)
Query: 266 SNTSDSICESSVGRLKQTVTWGQSVHLSCFVKLPASMAN-QPMSWYHYSKDKGRYQIKFR 324
+ + S ++ G+ V L C A+ P + K+ +
Sbjct: 12 TGAARSCRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGE 71
Query: 325 SDKFIRTVDGGLVIMAVEELDAGKYDCWLGN---TVLCTHNLTV 365
+ + DG L ++ + D+G Y C N + L V
Sbjct: 72 EETRMWAQDGALWLLPALQEDSGTYVCTTRNASYCDKMSIELRV 115
Score = 42.8 bits (100), Expect = 1e-04
Identities = 20/109 (18%), Positives = 32/109 (29%), Gaps = 9/109 (8%)
Query: 273 CESSVGRLKQTVTWGQSVHLSC-FVKLPASMANQP-MSWYHYSKDKGRYQIKFRSDKFIR 330
Q +T S L C + + WY K + ++KF+
Sbjct: 121 AFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWY-----KDSLLLDKDNEKFLS 175
Query: 331 TVDGG-LVIMAVEELDAGKYDCWLGNTVL-CTHNLTVDAHSNVADAPTR 377
L++ V DAG Y C L +N+T +
Sbjct: 176 VRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEE 224
Score = 32.4 bits (73), Expect = 0.24
Identities = 16/87 (18%), Positives = 29/87 (33%), Gaps = 11/87 (12%)
Query: 282 QTVTWGQSVHLSCFVKLPASMANQPMSWY-------HYSKDKGRYQIKFR---SDKFIRT 331
+ + G + + C V L M W+ + GR R S+
Sbjct: 236 ISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENY 295
Query: 332 VDGGLVIMAVEELDAG-KYDCWLGNTV 357
++ L+ V D + C + NT+
Sbjct: 296 IEVPLIFDPVTREDLHMDFKCVVHNTL 322
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 47.5 bits (112), Expect = 5e-06
Identities = 53/358 (14%), Positives = 103/358 (28%), Gaps = 88/358 (24%)
Query: 28 HRYDNCL---QPDFVGSYDIGKYVFFFFRE----TAVEYINCGKSVFSRVARV--CKRDT 78
++Y + L + FV ++D K V + +++I K S R+
Sbjct: 16 YQYKDILSVFEDAFVDNFDC-KDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSK 74
Query: 79 GGKNILSQNWATYLKARLNCSIPGEFPFYFNEIQDIYKVPGDDTKFYGVFTTSTTGLMGS 138
+ ++ + L+ + F + I+ + P T+ Y + +
Sbjct: 75 Q-EEMVQKFVEEVLRI--------NYKFLMSPIKTEQRQPSMMTRMY----IEQRDRLYN 121
Query: 139 AICSFSIEDIERA-FVGKFKEQATSTS---------------AWL--PVLSSRVPEPRP- 179
F+ ++ R K ++ W+ V S + +
Sbjct: 122 DNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMD 181
Query: 180 --------GQCVNDTETLPDSVLNFI-RSHPLMDEAVAHRDNKPV------FYRRDLLFT 224
C N ET+ + + + + P H N + R LL +
Sbjct: 182 FKIFWLNLKNC-NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS 240
Query: 225 H------LVVDVVQY----EVFGTTSEYIVYFAATTTLRTVF-------VKVRLLQDVSN 267
LV+ VQ F + + ++ TT + V L S
Sbjct: 241 KPYENCLLVLLNVQNAKAWNAFNLSCKILL----TTRFKQVTDFLSAATTTHISLDHHSM 296
Query: 268 T-----SDSIC----ESSVGRLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDK 316
T S+ + L + V LS + +W H + DK
Sbjct: 297 TLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDK 354
Score = 39.1 bits (90), Expect = 0.003
Identities = 43/321 (13%), Positives = 91/321 (28%), Gaps = 86/321 (26%)
Query: 81 KNILSQNWATYLKARLNCSIPGEFP---FYFNEIQDIYKVPGDDTKFYGVFTTSTTGLMG 137
K+ILS ++ +C + P EI I + +F T
Sbjct: 19 KDILSVFEDAFVD-NFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWT------- 70
Query: 138 SAICSFSIEDIERAFVGKFKEQATSTSAWL----------PVLSSRVPEPRPGQCVNDTE 187
+ S E +++ FV + +L P + +R+ + + ND +
Sbjct: 71 --LLSKQEEMVQK-FVEEVLRINYK---FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ 124
Query: 188 TLPDSVLNFIRSHPLMDEAVAHRDNKPVFYRRDLLFTH---------LVVDVVQYEVFGT 238
N R P + A + +P + + +DV
Sbjct: 125 VFAK--YNVSRLQPYLKLRQALLELRPAKN----VLIDGVLGSGKTWVALDVCLSYKVQC 178
Query: 239 TSEYIVYFAATTTLRTVFVKVRLLQDVSNTSDSICESSVGRLKQTVTWGQSVHLSC-FVK 297
++ +++ ++ N C S L+ + +
Sbjct: 179 KMDFKIFWL----------------NLKN-----CNSPETVLEMLQKL--LYQIDPNWTS 215
Query: 298 LPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMA----VEELDAGKYDCWL 353
+N + H + + R +K + + L+++ + +A C
Sbjct: 216 RSDHSSNIKLR-IHSIQAELRRLLKSK--PYEN----CLLVLLNVQNAKAWNAFNLSC-- 266
Query: 354 GNTVLCTHNLTVDAHSNVADA 374
+L T T V D
Sbjct: 267 --KILLT---TRFK--QVTDF 280
Score = 37.1 bits (85), Expect = 0.009
Identities = 41/265 (15%), Positives = 74/265 (27%), Gaps = 60/265 (22%)
Query: 62 CGKSVFSRVARVCKRDTGGKNILSQN--WATYLKARLNCSIPGEFPFYFNEIQDIYKVPG 119
GK+ VC + + W LK NC+ P +Q +
Sbjct: 161 SGKTWV--ALDVC-LSYKVQCKMDFKIFWLN-LK---NCNSPETV---LEMLQKLL---- 206
Query: 120 DDTKFYGVFTTSTTGLMGSAICSFSIEDIERAFVGKFKEQATSTSAWLPVL----SSRVP 175
Y + T+ S+ I I+ K + L VL +++
Sbjct: 207 -----YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC--LLVLLNVQNAKAW 259
Query: 176 EPRPGQC-----VNDTETLPDSVLNFIRSHPLMDEAVAHRDNKPVFYRRDLLFTHLVVDV 230
C + + D + +H +D + ++ L++
Sbjct: 260 NAFNLSCKILLTTRFKQ-VTDFLSAATTTHISLD------HHSMTLTPDEVK--SLLLKY 310
Query: 231 VQYEVFGTTSEYIVYFAATTTLRTVFVKVRLLQDVSNTSD-----------SICESSVGR 279
+ E TT R + + ++D T D +I ESS+
Sbjct: 311 LDCRPQDLPRE-----VLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNV 365
Query: 280 LKQTVTWGQSVHLSCF---VKLPAS 301
L+ LS F +P
Sbjct: 366 LEPAEYRKMFDRLSVFPPSAHIPTI 390
Score = 36.4 bits (83), Expect = 0.016
Identities = 42/354 (11%), Positives = 98/354 (27%), Gaps = 112/354 (31%)
Query: 2 EISRTHRSLYVASDERIKQIALVMCAHRYDNCL-------QPDFVGSYDIG--------- 45
+ S + + ++++ + + Y+NCL ++++
Sbjct: 218 DHSSNIKLRIHSIQAELRRL---LKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRF 274
Query: 46 KYVFFFF-----RETAVEYINCG------KSVFSRVA---------RVCK---------- 75
K V F ++++ + KS+ + V
Sbjct: 275 KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIA 334
Query: 76 ---RDTGGKNILSQNWATYLKARLNCSI--------PGEFPFYFNEIQDIYKVPGDDTKF 124
RD NW +L I P E+ F+ + ++ P
Sbjct: 335 ESIRD---GLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS-VF--P-PSAH- 386
Query: 125 YGVFTTSTTGLMGSAICSFSIEDIERAFVGKF--KEQATSTSAWLPVLSSRVPEPRPGQC 182
T L+ + + + ++Q ++ +P + + +
Sbjct: 387 ---IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKV----KL 439
Query: 183 VNDTETLPDSVL---NFIRSHPLMDEAVAHRDNKPVFYRRDLLFTHLV---VDVVQYEVF 236
N+ L S++ N ++ D + D Y ++H+ ++ E
Sbjct: 440 ENEYA-LHRSIVDHYNIPKTFDSDDLIPPYLDQ----Y----FYSHIGHHLKNIEHPERM 490
Query: 237 GTTSEYIVYFAATTTLRTVFVKVR--------------LLQDVSNTSDSICESS 276
V+ R + K+R LQ + IC++
Sbjct: 491 TLFRM--VFL----DFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDND 538
>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C,
C-protein, skeletal muscle fast- isoform, MYBPCF,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 101
Score = 43.9 bits (104), Expect = 5e-06
Identities = 17/90 (18%), Positives = 30/90 (33%), Gaps = 14/90 (15%)
Query: 282 QTVTWGQSVHLSCFVKLPASMANQPMSWYH-----YSKDKGRYQIKFRSDKFIRTVDGGL 336
Q V G V ++ V + + W +D + + +F+ D L
Sbjct: 18 QQVFVGDRVEMAVEVSEEGA----QVMWMKNGVELTREDSFKARYRFKKDGKRHI----L 69
Query: 337 VIMAVEELDAGKYDCWLGNTVLCTHNLTVD 366
+ V + D G+Y C L V+
Sbjct: 70 IFSDVVQEDRGRYQVITNGGQ-CEAELIVE 98
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, IG, membrane, homphilic,
glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB:
2xy2_A* 2vaj_A
Length = 189
Score = 45.5 bits (108), Expect = 6e-06
Identities = 15/88 (17%), Positives = 29/88 (32%), Gaps = 12/88 (13%)
Query: 282 QTVTWGQSVHLSCFVKLPASMANQP-MSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMA 340
Q G+ + C S + P +SW + ++F + L I+
Sbjct: 106 QEFKQGEDAEVVC----RVSSSPAPAVSWLY----HNEEVTTISDNRFAMLANNNLQILN 157
Query: 341 VEELDAGKYDCWLGNTV---LCTHNLTV 365
+ + D G Y C + ++ V
Sbjct: 158 INKSDEGIYRCEGRVEARGEIDFRDIIV 185
Score = 35.5 bits (82), Expect = 0.015
Identities = 18/93 (19%), Positives = 28/93 (30%), Gaps = 20/93 (21%)
Query: 282 QTVTWGQSVHLSCFVK-LPASMANQPMSWYHYS----KDKGRYQIKFRSDKFIRTVDGGL 336
++ G+S +C P + + WY+ R ++ L
Sbjct: 12 VELSVGESKFFTCTAIGEP-----ESIDWYNPQGEKIISTQRVVVQKEGV------RSRL 60
Query: 337 VIMAVEELDAGKYDC----WLGNTVLCTHNLTV 365
I DAG Y C G T T L +
Sbjct: 61 TIYNANIEDAGIYRCQATDAKGQTQEATVVLEI 93
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin
superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus
norvegicus}
Length = 403
Score = 46.4 bits (110), Expect = 8e-06
Identities = 21/90 (23%), Positives = 33/90 (36%), Gaps = 17/90 (18%)
Query: 282 QTVTWGQSVHLSCFVK---LPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVI 338
G+ L C V P+ +W +G I+ RS K+ L+I
Sbjct: 231 VIAIEGKDAVLECCVSGYPPPS------FTWL-----RGEEVIQLRSKKYSLLGGSNLLI 279
Query: 339 MAVEELDAGKYDCWLGN---TVLCTHNLTV 365
V + D+G Y C + + + LTV
Sbjct: 280 SNVTDDDSGTYTCVVTYKNENISASAELTV 309
Score = 41.0 bits (96), Expect = 5e-04
Identities = 20/96 (20%), Positives = 32/96 (33%), Gaps = 8/96 (8%)
Query: 282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAV 341
T G +V L C V PM H+ K++ + + G L I +
Sbjct: 131 ITAFMGDTVLLKCEV------IGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGALQISRL 184
Query: 342 EELDAGKYDCWLGNTVLCTHNLTVDAHSNVADAPTR 377
+ D+G Y C N + +A + P
Sbjct: 185 QPGDSGVYRCSARNPA--STRTGNEAEVRILSDPGL 218
Score = 37.5 bits (87), Expect = 0.005
Identities = 18/89 (20%), Positives = 25/89 (28%), Gaps = 16/89 (17%)
Query: 282 QTVTWGQSVHLSCFVK-LPASMANQP-MSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIM 339
+ C V P P ++W + SD F L I+
Sbjct: 322 LYAYESMDIEFECAVSGKP-----VPTVNWMK------NGDVVIPSDYFQIVGGSNLRIL 370
Query: 340 AVEELDAGKYDCWLGN---TVLCTHNLTV 365
V + D G Y C N + L V
Sbjct: 371 GVVKSDEGFYQCVAENEAGNAQSSAQLIV 399
Score = 34.8 bits (80), Expect = 0.036
Identities = 16/98 (16%), Positives = 32/98 (32%), Gaps = 24/98 (24%)
Query: 282 QTVTWGQSVHLSCFVKLPASMANQPM---SWYHYSKDKGRYQIKFRSDKFIRTV-DGGLV 337
G +V L+C + +++ + W + D + + +G L+
Sbjct: 31 AVTMRGGNVLLNCSAE-----SDRGVPVIKWKKDGLI-----LALGMDDRKQQLPNGSLL 80
Query: 338 IMAVEEL-----DAGKYDC-----WLGNTVLCTHNLTV 365
I + D G Y C G+ + T + V
Sbjct: 81 IQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMV 118
>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 99
Score = 42.8 bits (101), Expect = 1e-05
Identities = 17/94 (18%), Positives = 30/94 (31%), Gaps = 14/94 (14%)
Query: 282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAV 341
V G + L C ++ Q ++W +D + R + +
Sbjct: 13 FLVHPGDLLQLRCRLRDDV----QSINWL---RDGVQ----LAESNRTRITGEEVEVQDS 61
Query: 342 EELDAGKYDCWLGNTVLCTHNLTVDAHSNVADAP 375
D+G Y C + + T NV+DA
Sbjct: 62 VPADSGLYACVTSSPS---GSDTTYFSVNVSDAL 92
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold,
glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4
b.1.1.4 PDB: 2ncm_A 3ncm_A
Length = 191
Score = 44.8 bits (106), Expect = 1e-05
Identities = 19/88 (21%), Positives = 31/88 (35%), Gaps = 12/88 (13%)
Query: 282 QTVTWGQSVHLSCFVKLPASMANQPM-SWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMA 340
Q G+ + C + P W H KGR I + +FI + L I
Sbjct: 110 QEFKEGEDAVIVC----DVVSSLPPTIIWKH----KGRDVILKKDVRFIVLSNNYLQIRG 161
Query: 341 VEELDAGKYDCWLGN---TVLCTHNLTV 365
+++ D G Y C + ++ V
Sbjct: 162 IKKTDEGTYRCEGRILARGEINFKDIQV 189
Score = 36.3 bits (84), Expect = 0.007
Identities = 22/105 (20%), Positives = 36/105 (34%), Gaps = 18/105 (17%)
Query: 282 QTVTWGQSVHLSCFVK-LPASMANQPMSWYHY-----SKDKGRYQIKFRSDKFIRTVDGG 335
++ G+S C V ++ +SW+ S ++ R + + D
Sbjct: 12 GEISVGESKFFLCQVAGDAK---DKDISWFSPNGEKLSPNQQRISVVWNDDD-----SST 63
Query: 336 LVIMAVEELDAGKYDC----WLGNTVLCTHNLTVDAHSNVADAPT 376
L I DAG Y C G T N+ + +APT
Sbjct: 64 LTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPT 108
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila
melanogaster} PDB: 3pxj_A
Length = 212
Score = 45.2 bits (107), Expect = 1e-05
Identities = 22/91 (24%), Positives = 33/91 (36%), Gaps = 15/91 (16%)
Query: 282 QTVTWGQSVHLSCFVKLPASMANQPM-SWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMA 340
+ + G +V ++C A P W K + ++ S+ DG L I
Sbjct: 120 RVIEVGHTVLMTC----KAIGNPTPNIYWI-----KNQTKVDM-SNPRYSLKDGFLQIEN 169
Query: 341 VEELDAGKYDCW----LGNTVLCTHNLTVDA 367
E D GKY+C +G NL V
Sbjct: 170 SREEDQGKYECVAENSMGTEHSKATNLYVKV 200
Score = 35.2 bits (81), Expect = 0.023
Identities = 19/105 (18%), Positives = 32/105 (30%), Gaps = 21/105 (20%)
Query: 282 QTVTWGQSVHLSCFVK-LPASMANQPM-SWYHYSKDKGRYQIKFRSDKFIRTV-DGGLVI 338
Q V G C + P P W K ++ ++ GG+ I
Sbjct: 16 QGVRVGGVASFYCAARGDP-----PPSIVWR-----KNGKKVSGTQSRYTVLEQPGGISI 65
Query: 339 MAVEEL----DAGKYDC----WLGNTVLCTHNLTVDAHSNVADAP 375
+ +E + D Y+C +G+ V LT+
Sbjct: 66 LRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGF 110
>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton,
immunoglobulin domain, muscle protein, phosphorylation,
repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A
1tiu_A 2rq8_A
Length = 93
Score = 42.7 bits (101), Expect = 1e-05
Identities = 15/87 (17%), Positives = 23/87 (26%), Gaps = 14/87 (16%)
Query: 282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGG---LVI 338
V G++ H + P W + S DG L++
Sbjct: 15 VEVFVGETAHFEIELSEPDV----HGQWK-----LKGQPLAA-SPDCEIIEDGKKHILIL 64
Query: 339 MAVEELDAGKYDCWLGNTVLCTHNLTV 365
+ G+ NT NL V
Sbjct: 65 HNCQLGMTGEVSFQAANTK-SAANLKV 90
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane,
glycoprotein, signal, complex (immunoglobulin/receptor);
2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB:
1ira_Y* 4dep_B* 1g0y_R
Length = 315
Score = 45.5 bits (107), Expect = 1e-05
Identities = 17/96 (17%), Positives = 27/96 (28%), Gaps = 9/96 (9%)
Query: 265 VSNTSDSICESSVGRLKQTVTWGQSVHLSCFVKLPASMANQP---MSWYHYSKDKGRYQI 321
++C ++ KQ + L C N + WY +
Sbjct: 96 FVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYK-----DCKPL 150
Query: 322 KFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGNTV 357
+ V L++M V E G Y C T
Sbjct: 151 LL-DNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTY 185
Score = 43.2 bits (101), Expect = 7e-05
Identities = 13/82 (15%), Positives = 26/82 (31%), Gaps = 8/82 (9%)
Query: 287 GQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDA 346
+ C + + ++WY KD + + I L + + D+
Sbjct: 20 NEIDVRPCPL--NPNEHKGTITWY---KDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDS 74
Query: 347 GKYDCWLGNTVLCTH---NLTV 365
G Y C + N+ C +
Sbjct: 75 GHYYCVVRNSSYCLRIKISAKF 96
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A
{Homo sapiens}
Length = 207
Score = 44.5 bits (105), Expect = 1e-05
Identities = 22/96 (22%), Positives = 30/96 (31%), Gaps = 18/96 (18%)
Query: 279 RLKQTVTWGQSVHLSCFVKLPASMANQPM----SWYHYSKDKGRYQIKFRSDKFIRTVDG 334
L VT +V L C V AN WY K +I +
Sbjct: 123 YLSWEVTGECNVLLKCKV------ANIKKETHIVWY-----KDEREISVDEKHDFKDGIC 171
Query: 335 GLVIMAVEELDAGKYDCWLGN---TVLCTHNLTVDA 367
L+I + DAG Y+ L + L +A
Sbjct: 172 TLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEA 207
Score = 32.2 bits (73), Expect = 0.19
Identities = 11/74 (14%), Positives = 25/74 (33%), Gaps = 10/74 (13%)
Query: 308 SWYHYSK---DKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGN---TVLCTH 361
++ K + +Y++ + I + + +++ D G Y L + T T
Sbjct: 36 NYIFNEKEIFEGPKYKMHIDRNTGIIE----MFMEKLQDEDEGTYTFQLQDGKATNHSTV 91
Query: 362 NLTVDAHSNVADAP 375
L D +
Sbjct: 92 VLVGDVFKKLQKEA 105
>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor,
adhesion, structural genomics, NEW YORK STR genomics
research consortium, nysgrc; 1.70A {Homo sapiens} PDB:
3rq3_A 3udw_A* 3ucr_A
Length = 117
Score = 43.0 bits (101), Expect = 1e-05
Identities = 15/76 (19%), Positives = 28/76 (36%), Gaps = 8/76 (10%)
Query: 283 TVTWGQSVHLSCFVKLPASMANQPMSWYH-------YSKDKGRYQIKFRSDKFIRTVDGG 335
+ G S+ L C + + Q ++W + D G + D+ G
Sbjct: 14 SAEKGGSIILQCHLSSTTAQVTQ-VNWEQQDQLLAICNADLGWHISPSFKDRVAPGPGLG 72
Query: 336 LVIMAVEELDAGKYDC 351
L + ++ D G+Y C
Sbjct: 73 LTLQSLTVNDTGEYFC 88
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth
factor-receptor complex, receptor tyrosine kinase, CY
4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus
musculus}
Length = 289
Score = 44.9 bits (106), Expect = 2e-05
Identities = 19/89 (21%), Positives = 26/89 (29%), Gaps = 8/89 (8%)
Query: 281 KQTVTWGQSVHLSCFVKLPASMANQPM-SWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIM 339
K G++ + C A+ A K + L +
Sbjct: 195 KLVRIRGEAAQIVC----SATNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLN 250
Query: 340 AVEELDAGKYDCWLGN---TVLCTHNLTV 365
AV+ DAG Y C N T T N V
Sbjct: 251 AVDFQDAGIYSCVASNDVGTRTATMNFQV 279
Score = 36.8 bits (85), Expect = 0.009
Identities = 19/97 (19%), Positives = 35/97 (36%), Gaps = 9/97 (9%)
Query: 282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAV 341
TV GQ L C + PA + +S ++ GR R + + G +I
Sbjct: 99 VTVVEGQEAVLPCLITDPALKDS--VSLM---REGGR--QVLRKTVYFFSPWRGFIIRKA 151
Query: 342 EELDAGKYDC--WLGNTVLCTHNLTVDAHSNVADAPT 376
+ LD+ Y C + + + + + + P
Sbjct: 152 KVLDSNTYVCKTMVNGRESTSTGIWLKVNRVHPEPPQ 188
Score = 34.5 bits (79), Expect = 0.044
Identities = 15/95 (15%), Positives = 22/95 (23%), Gaps = 18/95 (18%)
Query: 282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAV 341
V G++V L C +N + W I + L
Sbjct: 14 LVVEPGETVTLRCV-------SNGSVEWD--------GPISPYWTLDPESPGSTLTTRNA 58
Query: 342 EELDAGKYDCWLGNTVLCTHNLTVDAHSNVADAPT 376
+ G Y C + H V D
Sbjct: 59 TFKNTGTYRCTELEDP---MAGSTTIHLYVKDPAH 90
>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein,
immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG;
2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB:
1p9m_C 2arw_A
Length = 325
Score = 44.9 bits (105), Expect = 2e-05
Identities = 20/86 (23%), Positives = 32/86 (37%), Gaps = 8/86 (9%)
Query: 282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAV 341
T G SV L+C P N + W G + + + L++ +V
Sbjct: 16 LTSLPGDSVTLTCPGVEPED--NATVHWVLRKPAAGSHPSR------WAGMGRRLLLRSV 67
Query: 342 EELDAGKYDCWLGNTVLCTHNLTVDA 367
+ D+G Y C+ T +L VD
Sbjct: 68 QLHDSGNYSCYRAGRPAGTVHLLVDV 93
>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in
U twenty twenty, neurogenesis, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 42.1 bits (99), Expect = 3e-05
Identities = 19/99 (19%), Positives = 29/99 (29%), Gaps = 15/99 (15%)
Query: 282 QTVTWGQSVHLSCFVK-LPASMANQPM-SWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIM 339
QTV + LSC P P W K + + + + +G L I
Sbjct: 18 QTVAVDGTFVLSCVATGSP-----VPTILWR-----KDGVLVSTQDSRIKQLENGVLQIR 67
Query: 340 AVEELDAGKYDCWLGN---TVLCTHNLTVDAHSNVADAP 375
+ D G+Y C + + V P
Sbjct: 68 YAKLGDTGRYTCIASTPSGEATWSAYIEVQEFGVPVQPP 106
>3irg_A Titin; IG-like, titin, OBSL1, complex, alternative splicing,
ATP-binding, calcium, calmodulin-binding,
cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_A 3q5o_A
2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Length = 100
Score = 41.5 bits (98), Expect = 3e-05
Identities = 22/96 (22%), Positives = 43/96 (44%), Gaps = 21/96 (21%)
Query: 282 QTVTWGQSVHLSCFVK-LPASMANQP-MSWYH-----YSKDKGRYQIKFRSDKFIRTVDG 334
++ G+ + ++C P P ++W +S+++GR+ I+ D
Sbjct: 15 ISIDEGKVLTVACAFTGEP-----TPEVTWSCGGRKIHSQEQGRFHIENTDDLTT----- 64
Query: 335 GLVIMAVEELDAGKYDCWLGN---TVLCTHNLTVDA 367
L+IM V++ D G Y LGN + T N+ + +
Sbjct: 65 -LIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHIRS 99
>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast
MYBP-C, C-protein, skeletal muscle fast isoform,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 42.1 bits (98), Expect = 3e-05
Identities = 18/95 (18%), Positives = 28/95 (29%), Gaps = 9/95 (9%)
Query: 282 QTVTWGQSVHLSCFVKLPASMANQPMSWY------HYSKDKGRYQIKFRSDKFIRTVDGG 335
+V G+ + V + W+ SK R+ K +
Sbjct: 22 VSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSASNVYTVE 81
Query: 336 LVIMAVEELDAGKYDCWLGN---TVLCTHNLTVDA 367
L I V D G Y + C N+ V+A
Sbjct: 82 LHIGKVVLGDRGYYRLEVKAKDTCDSCGFNIDVEA 116
>1f97_A Junction adhesion molecule; immunoglobulin superfamily,
beta-sandwich fold, cell adhesion; 2.50A {Mus musculus}
SCOP: b.1.1.1 b.1.1.4
Length = 212
Score = 43.8 bits (103), Expect = 3e-05
Identities = 22/96 (22%), Positives = 35/96 (36%), Gaps = 14/96 (14%)
Query: 282 QTVTWGQSVHLSCFVKLPASMANQP--MSWYH-----YSKDKGRYQIKFRSDKFIRTVDG 334
+VT G L+C + P SW+ + D + + S I G
Sbjct: 114 SSVTIGNRAVLTCS----EHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSG 169
Query: 335 GLVIMAVEELDAGKYDCWLGN---TVLCTHNLTVDA 367
L+ V D+G+Y C N T + + +DA
Sbjct: 170 DLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDA 205
Score = 36.9 bits (85), Expect = 0.006
Identities = 14/77 (18%), Positives = 23/77 (29%), Gaps = 12/77 (15%)
Query: 282 QTVTWGQSVHLSCFVK-LPASMANQP-MSWYH-----YSKDKGRYQIKFRSDKFIRTVDG 334
V +S+ L+C P + W + QI +
Sbjct: 11 VQVPENESIKLTCTYSGFS-----SPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSS 65
Query: 335 GLVIMAVEELDAGKYDC 351
G+ +V D G+Y C
Sbjct: 66 GITFSSVTRKDNGEYTC 82
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein
complex, receptor tyrosine kinas binding, immunoglobulin
domain, kinase, membrane, nucleotid binding; HET: NAG;
2.10A {Homo sapiens}
Length = 241
Score = 43.8 bits (103), Expect = 3e-05
Identities = 20/97 (20%), Positives = 28/97 (28%), Gaps = 17/97 (17%)
Query: 282 QTVTWGQSVHLSCFVKLPASMANQP-MSWYHYSKDKG---------RYQIKFRSDKFIRT 331
QT G V C QP + W + + G +
Sbjct: 124 QTAVLGSDVEFHC----KVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVE 179
Query: 332 VDGGLVIMAVEELDAGKYDCWLGNTV---LCTHNLTV 365
D L + V E D G+Y C N + L+V
Sbjct: 180 ADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSV 216
Score = 37.6 bits (87), Expect = 0.004
Identities = 21/94 (22%), Positives = 33/94 (35%), Gaps = 14/94 (14%)
Query: 282 QTVTWGQSVHLSCFVK-LPASMANQP-MSWYHYSKDKGRYQIKFRSDKFIRTVDGG-LVI 338
V +V C P P +SW K+ ++ + R LV+
Sbjct: 25 LAVPAANTVRFRCPAAGNP-----TPSISWL---KNGREFRGEHRIGGIKLRHQQWSLVM 76
Query: 339 MAVEELDAGKYDCWLGN---TVLCTHNLTVDAHS 369
+V D G Y C + N ++ T+ L V S
Sbjct: 77 ESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERS 110
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus
gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB:
2om5_A
Length = 382
Score = 44.5 bits (105), Expect = 3e-05
Identities = 25/134 (18%), Positives = 41/134 (30%), Gaps = 22/134 (16%)
Query: 253 RTVFVKVRLLQDVSNTSDSICESSVGRLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHY 312
R ++ LQ+ S +T G V +C P P Y +
Sbjct: 91 REASLRFGFLQEFSAEERD---------PVKITEGWGVMFTCSP--PPH---YPALSYRW 136
Query: 313 SKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGNTVLCTHN--------LT 364
++ I +F+ G L I E D G Y C+ + + L+
Sbjct: 137 LLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLS 196
Query: 365 VDAHSNVADAPTRL 378
+ A AP+
Sbjct: 197 LAAEDARQYAPSIK 210
Score = 39.1 bits (91), Expect = 0.002
Identities = 24/130 (18%), Positives = 37/130 (28%), Gaps = 17/130 (13%)
Query: 243 IVYFAATTTLRTVFVKVRLLQDVSNTSDSICES--SVGRLKQTVTWGQSVHLSCFVKLPA 300
++VF K L + + S + GQ V L CF
Sbjct: 176 FATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAF--- 232
Query: 301 SMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGN---TV 357
N P+ + K G + + L I V+ D G Y+C N
Sbjct: 233 --GN-PVPQIKWRKLDGS------QTSKWLSSEPLLHIQNVDFEDEGTYECEAENIKGRD 283
Query: 358 LCTHNLTVDA 367
+ + A
Sbjct: 284 TYQGRIIIHA 293
Score = 37.1 bits (86), Expect = 0.007
Identities = 20/94 (21%), Positives = 30/94 (31%), Gaps = 23/94 (24%)
Query: 282 QTVTWGQSVHLSCFVK-LPASMANQP-MSWYHYSK---DKGRYQIKFRSDKFIRTVDGGL 336
G + SC P +P + W + + R ++ G L
Sbjct: 304 TEADIGSDLRWSCVASGKP-----RPAVRWLRDGQPLASQNRIEVS----------GGEL 348
Query: 337 VIMAVEELDAGKYDCWLGN---TVLCTHNLTVDA 367
+ D+G Y C N TV + LTV A
Sbjct: 349 RFSKLVLEDSGMYQCVAENKHGTVYASAELTVQA 382
Score = 32.5 bits (74), Expect = 0.20
Identities = 21/72 (29%), Positives = 28/72 (38%), Gaps = 13/72 (18%)
Query: 283 TVTWGQSVHLSCFVKLPASMANQPM--SWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIM- 339
+ + V L+C + AN P W + +K D R V G LVI
Sbjct: 18 EGSAEEKVTLTCRAR-----ANPPATYRWKMNGTE-----LKMGPDSRYRLVAGDLVISN 67
Query: 340 AVEELDAGKYDC 351
V+ DAG Y C
Sbjct: 68 PVKAKDAGSYQC 79
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion,
membrane, development protein; HET: NAG; 1.95A
{Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Length = 388
Score = 44.5 bits (105), Expect = 3e-05
Identities = 27/130 (20%), Positives = 46/130 (35%), Gaps = 11/130 (8%)
Query: 243 IVYFAATTTLRTVFVKVRLLQDVSNTSDSICESSVGRLKQTVTWGQSVHLSCFVKLPASM 302
T R K RL+ +S + ++ + + ++ L C +
Sbjct: 183 RTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQ----- 237
Query: 303 ANQP--MSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGN---TV 357
WY + + R Q +D+ ++ V G L+I D+GKY C + N
Sbjct: 238 GFPAPSFRWYKFIEGTTRKQAVVLNDR-VKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGE 296
Query: 358 LCTHNLTVDA 367
LTV A
Sbjct: 297 SVETVLTVTA 306
Score = 41.5 bits (97), Expect = 3e-04
Identities = 17/97 (17%), Positives = 33/97 (34%), Gaps = 4/97 (4%)
Query: 282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDK-GRYQIKFRSDKFIRTVDGGLVIMA 340
+ V G S + C + P+ +A+ ++ ++ + K++ G L I
Sbjct: 113 EHVIRGNSAVIKCLI--PSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIRE 170
Query: 341 VEELDA-GKYDCWLGNTVLCTHNLTVDAHSNVADAPT 376
V D Y C + + L+ V P
Sbjct: 171 VGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPI 207
Score = 33.0 bits (75), Expect = 0.17
Identities = 19/89 (21%), Positives = 33/89 (37%), Gaps = 23/89 (25%)
Query: 282 QTVTWGQSVHLSCFVK-LPASMANQP-MSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIM 339
QTV +G+ +C P +SW G+ I + L I
Sbjct: 317 QTVDFGRPAVFTCQYTGNP-----IKTVSWMK----DGKA---------IGHSESVLRIE 358
Query: 340 AVEELDAGKYDCWLGN---TVLCTHNLTV 365
+V++ D G Y C++ N + + L +
Sbjct: 359 SVKKEDKGMYQCFVRNDRESAEASAELKL 387
>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural
genomics, IG-fold I-SET, RGD motif, homophilic adhesion,
arterial smooth muscle cells; 0.96A {Homo sapiens}
Length = 99
Score = 41.5 bits (98), Expect = 3e-05
Identities = 28/94 (29%), Positives = 39/94 (41%), Gaps = 18/94 (19%)
Query: 282 QTVTWGQSVHLSCFVK-LPASMANQPM-SWYHYSKDKGRYQIKFRSDKFIRTVDGG---L 336
Q+V GQ V +S V+ P +P+ SW + R ++ +F +GG L
Sbjct: 15 QSVREGQDVIMSIRVQGEP-----KPVVSWL-----RNRQPVRPDQRRFAEEAEGGLCRL 64
Query: 337 VIMAVEELDAGKYDCWLGN---TVLCTHNLTVDA 367
I+A E DAG Y C N C L V
Sbjct: 65 RILAAERGDAGFYTCKAVNEYGARQCEARLEVRG 98
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30,
N-terminal eight IG domains...; immunoglobulin domain;
HET: NAG NDG; 4.19A {Drosophila melanogaster}
Length = 816
Score = 44.9 bits (106), Expect = 4e-05
Identities = 15/94 (15%), Positives = 30/94 (31%), Gaps = 11/94 (11%)
Query: 281 KQTVTWGQSVHLSCFVKLPASMANQPM--SWYHYSKDKGRYQIKFRSDKFIRTVDGGLVI 338
+ G + C +W D + IR +G L +
Sbjct: 723 DKAFAQGSDAKVECKAD-----GFPKPQVTWKKAVGDTPGEYKDLKKSDNIRVEEGTLHV 777
Query: 339 MAVEELDAGKYDCW----LGNTVLCTHNLTVDAH 368
+++ + G Y C +G+ + ++V AH
Sbjct: 778 DNIQKTNEGYYLCEAINGIGSGLSAVIMISVQAH 811
Score = 41.8 bits (98), Expect = 3e-04
Identities = 23/90 (25%), Positives = 38/90 (42%), Gaps = 9/90 (10%)
Query: 282 QTVTWGQSVHLSCFVK-LPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMA 340
+T + ++ L C + P + WY + + R Q +D+ ++ V G L+I
Sbjct: 258 KTYSGSSTMALLCPAQGYPVPV----FRWYKFIEGTTRKQAVVLNDR-VKQVSGTLIIKD 312
Query: 341 VEELDAGKYDCWLGN---TVLCTHNLTVDA 367
D+GKY C + N LTV A
Sbjct: 313 AVVEDSGKYLCVVNNSVGGESVETVLTVTA 342
Score = 39.5 bits (92), Expect = 0.002
Identities = 18/97 (18%), Positives = 33/97 (34%), Gaps = 2/97 (2%)
Query: 281 KQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMA 340
K+ V G S + C + + + +SW+ + + + K++ G L I
Sbjct: 147 KEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEE-ENYFPGAEYDGKYLVLPSGELHIRE 205
Query: 341 VEELDA-GKYDCWLGNTVLCTHNLTVDAHSNVADAPT 376
V D Y C + + L+ V P
Sbjct: 206 VGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPI 242
Score = 37.2 bits (86), Expect = 0.008
Identities = 23/93 (24%), Positives = 32/93 (34%), Gaps = 16/93 (17%)
Query: 282 QTVTWGQSVHLSCFVK---LPASMANQPMSWYHYSK---DKGRYQIKFRSDKFIRTVDGG 335
+T+ G SV L C P +SW K + RYQ+ + V
Sbjct: 439 ETMEPGPSVFLKCVAGGNPTPE------ISWELDGKKIANNDRYQVG-QYVTVNGDVVSY 491
Query: 336 LVIMAVEELDAGKYDCWLGN---TVLCTHNLTV 365
L I +V D G Y C + + L V
Sbjct: 492 LNITSVHANDGGLYKCIAKSKVGVAEHSAKLNV 524
Score = 35.7 bits (82), Expect = 0.029
Identities = 18/92 (19%), Positives = 34/92 (36%), Gaps = 18/92 (19%)
Query: 281 KQTVTWGQSVHLSCFVK--LPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVI 338
K+ + G+++ ++C V S+ W +D + + K +G L+I
Sbjct: 535 KKAIVAGETLIVTCPVAGYPIDSI-----VWE---RDNR--ALPI-NRKQKVFPNGTLII 583
Query: 339 MAVEEL-DAGKYDCW----LGNTVLCTHNLTV 365
VE D Y C G + + + V
Sbjct: 584 ENVERNSDQATYTCVAKNQEGYSARGSLEVQV 615
Score = 35.3 bits (81), Expect = 0.039
Identities = 19/94 (20%), Positives = 32/94 (34%), Gaps = 25/94 (26%)
Query: 282 QTVTWGQSVHLSCFVKLPASMANQPM---SWYHYSKDKGRYQIKFRSDKFIRTVDGGLVI 338
QTV +G+ +C P+ SW K I + L I
Sbjct: 353 QTVDFGRPAVFTCQYT------GNPIKTVSWMKD-------------GKAIGHSESVLRI 393
Query: 339 MAVEELDAGKYDCWLGN---TVLCTHNLTVDAHS 369
+V++ D G Y C++ N + + L +
Sbjct: 394 ESVKKEDKGMYQCFVRNDRESAEASAELKLGGRF 427
Score = 34.1 bits (78), Expect = 0.090
Identities = 20/93 (21%), Positives = 26/93 (27%), Gaps = 17/93 (18%)
Query: 281 KQTVTWGQSVHLSCFVKLPASMANQPMS--WYHYSKDKGRYQIKFRSDKFIRTVD---GG 335
+ GQ + L C + P++ W I V
Sbjct: 628 EGPAQVGQYLTLHC----SVPGGDLPLNIDWT-----LDGQAISEDLGITTSRVGRRGSV 678
Query: 336 LVIMAVEELDAGKYDCWLGN---TVLCTHNLTV 365
L I AVE AG + C N T L V
Sbjct: 679 LTIEAVEASHAGNFTCHARNLAGHQQFTTPLNV 711
>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain,
SLOW-type myosin-binding protein C, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 100
Score = 41.2 bits (97), Expect = 4e-05
Identities = 24/98 (24%), Positives = 34/98 (34%), Gaps = 19/98 (19%)
Query: 282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGG---LVI 338
QTV G+ + L C + N P W K ++ SD+ G LVI
Sbjct: 17 QTVNLGKEICLKCEIS-----ENIPGKWT-----KNGLPVQE-SDRLKVVQKGRIHKLVI 65
Query: 339 MAVEELDAGKYDCWLGNTVLCTHNLTVDAHSNVADAPT 376
D G Y N+T+ A +V P+
Sbjct: 66 ANALTEDEGDYVFAPDAY-----NVTLPAKVHVISGPS 98
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif,
immunoglobulin-like domain, growth facto factor
receptor, extracellular; 2.10A {Homo sapiens} PDB:
1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E
1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Length = 231
Score = 43.3 bits (102), Expect = 4e-05
Identities = 21/96 (21%), Positives = 29/96 (30%), Gaps = 16/96 (16%)
Query: 282 QTVTWGQSVHLSCFVKLPASMANQP-MSWYH--------YSKDKGRYQIKFRSDKFIRTV 332
+ G V C QP + W Y D Y + +
Sbjct: 128 ASTVVGGDVEFVC----KVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSN 183
Query: 333 DGGLVIMAVEELDAGKYDCWLGNT---VLCTHNLTV 365
L + V E DAG+Y C + N + LTV
Sbjct: 184 AEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTV 219
Score = 33.7 bits (77), Expect = 0.059
Identities = 20/97 (20%), Positives = 34/97 (35%), Gaps = 14/97 (14%)
Query: 282 QTVTWGQSVHLSCFVK-LPASMANQP-MSWYHYSKDKGRYQIKFRSDKFIRTVDGG-LVI 338
V +V C P P M W K+ ++ + R + L++
Sbjct: 29 HAVPAANTVKFRCPAGGNP-----MPTMRWL---KNGKEFKQEHRIGGYKVRNQHWSLIM 80
Query: 339 MAVEELDAGKYDCWLGN---TVLCTHNLTVDAHSNVA 372
+V D G Y C + N ++ T++L V S
Sbjct: 81 ESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHR 117
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling
protein/receptor, growth regulation/complex, vitamin
K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Length = 195
Score = 43.0 bits (101), Expect = 5e-05
Identities = 16/95 (16%), Positives = 29/95 (30%), Gaps = 14/95 (14%)
Query: 282 QTVTWGQSVHLSCFVKLPASMANQP-MSWYH-----YSKDKGRYQIKFRSDKFIRTVDGG 335
T G + L C + P + W D + Q+ D+ +
Sbjct: 12 ITGARGLTGTLRCQL---QVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVS 68
Query: 336 -LVIMAVEELDAGKYDCW----LGNTVLCTHNLTV 365
L I +++ D G+Y C V + +
Sbjct: 69 QLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGL 103
Score = 28.3 bits (63), Expect = 2.9
Identities = 14/91 (15%), Positives = 25/91 (27%), Gaps = 22/91 (24%)
Query: 282 QTVTWGQSVHLSCFVK---LPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVI 338
+TV +LSC + P + W + + + L +
Sbjct: 116 RTVAANTPFNLSCQAQGPPEPVD-----LLWL-----QDAVPL---ATAPGHGPQRSLHV 162
Query: 339 MAVEELDAGKYDCW----LGNTVLCTHNLTV 365
+ + C G T T +TV
Sbjct: 163 PGLN--KTSSFSCEAHNAKGVTTSRTATITV 191
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion
comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Length = 201
Score = 42.9 bits (101), Expect = 5e-05
Identities = 26/130 (20%), Positives = 35/130 (26%), Gaps = 17/130 (13%)
Query: 243 IVYFAATTTLRTVFVKVRLLQDVSNTSDSICESSVGRLKQTVTWGQSVHLSCFVK-LPAS 301
V + T + T + V GQ+V L CF P
Sbjct: 84 FVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFALGNP-- 141
Query: 302 MANQP-MSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGN---TV 357
P + W K S I T L I ++ D G Y+C N
Sbjct: 142 ---VPDIRWR---KVLE----PMPSTAEISTSGAVLKIFNIQLEDEGIYECEAENIRGKD 191
Query: 358 LCTHNLTVDA 367
+ V A
Sbjct: 192 KHQARIYVQA 201
Score = 40.6 bits (95), Expect = 2e-04
Identities = 16/76 (21%), Positives = 27/76 (35%), Gaps = 4/76 (5%)
Query: 282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAV 341
V G+ + L C Y + ++ I +F+ +G L I V
Sbjct: 18 VRVKEGKGMVLLC----DPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGNLYIANV 73
Query: 342 EELDAGKYDCWLGNTV 357
E D G Y C++ +
Sbjct: 74 EASDKGNYSCFVSSPS 89
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell
adhesion, immunoglobulin domain; 3.2A {Drosophila
melanogaster} PDB: 2vra_A*
Length = 217
Score = 42.9 bits (101), Expect = 5e-05
Identities = 20/79 (25%), Positives = 27/79 (34%), Gaps = 6/79 (7%)
Query: 282 QTVTWGQSVHLSCFVKLPASMANQPM-SWYH--YSKDKGRYQIKFRSDKFIRTVDGGLVI 338
V G++ L C P +P W D + S + G L+I
Sbjct: 118 TRVAKGETALLEC---GPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLI 174
Query: 339 MAVEELDAGKYDCWLGNTV 357
VE +D G Y C N V
Sbjct: 175 SNVEPIDEGNYKCIAQNLV 193
Score = 32.1 bits (73), Expect = 0.20
Identities = 18/92 (19%), Positives = 31/92 (33%), Gaps = 14/92 (15%)
Query: 282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGL----V 337
V + L+C V +P + KD + ++ DG L
Sbjct: 19 LVVKKNEPATLNCKV------EGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRT 72
Query: 338 IMAVEELDAGKYDC----WLGNTVLCTHNLTV 365
+ +E D G+Y C +G V +L +
Sbjct: 73 MQGKKEQDGGEYWCVAKNRVGQAVSRHASLQI 104
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor,
tight junction formation, immunoglobulin superfamily,
immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1
b.1.1.4 PDB: 3eoy_G
Length = 209
Score = 42.6 bits (100), Expect = 6e-05
Identities = 18/95 (18%), Positives = 34/95 (35%), Gaps = 13/95 (13%)
Query: 282 QTVTWGQSVHLSCFVKL--PASMANQPMSWYH----YSKDKGRYQIKFRSDKFIRTVDGG 335
+ T G L+C + P S +W+ + + S + G
Sbjct: 117 SSATIGNRAVLTCSEQDGSPPSE----YTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGE 172
Query: 336 LVIMAVEELDAGKYDCWLGN---TVLCTHNLTVDA 367
LV + D G+Y C N T + ++ + ++A
Sbjct: 173 LVFDPLSASDTGEYSCEARNGYGTPMTSNAVRMEA 207
Score = 36.9 bits (85), Expect = 0.005
Identities = 15/97 (15%), Positives = 26/97 (26%), Gaps = 15/97 (15%)
Query: 282 QTVTWGQSVHLSCFVK-LPASMANQP-MSWYHYSKDKGRY-----QIKFRSDKFIRTVDG 334
+ V LSC P + W D R +I + + +
Sbjct: 14 VRIPENNPVKLSCAYSGFS-----SPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPT 68
Query: 335 GLVIMAVEELDAGKYDCWLGNTV---LCTHNLTVDAH 368
G+ +V D G Y C + + +
Sbjct: 69 GITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVL 105
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, membrane, glycoprote adhesion,
transmembrane; HET: NAG; 2.00A {Homo sapiens}
Length = 189
Score = 42.5 bits (100), Expect = 6e-05
Identities = 18/88 (20%), Positives = 31/88 (35%), Gaps = 13/88 (14%)
Query: 282 QTVTWGQSVHLSCFVKLPASMANQP-MSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMA 340
T G+ + SC AS + +P +SW+ + I+ ++ + L +
Sbjct: 108 ATAERGEEMTFSC----RASGSPEPAISWF-----RNGKLIEENEKYILKGSNTELTVRN 158
Query: 341 VEELDAGKYDCWLGN---TVLCTHNLTV 365
+ D G Y C N L V
Sbjct: 159 IINSDGGPYVCRATNKAGEDEKQAFLQV 186
Score = 42.1 bits (99), Expect = 7e-05
Identities = 15/72 (20%), Positives = 24/72 (33%), Gaps = 11/72 (15%)
Query: 282 QTVTWGQSVHLSCFVK-LPASMANQPM-SWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIM 339
Q G+ + C V P P SW + ++F + L I+
Sbjct: 12 QEFKQGEDAEVVCRVSSSP-----APAVSWLY----HNEEVTTISDNRFAMLANNNLQIL 62
Query: 340 AVEELDAGKYDC 351
+ + D G Y C
Sbjct: 63 NINKSDEGIYRC 74
>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 115
Score = 40.8 bits (96), Expect = 7e-05
Identities = 15/90 (16%), Positives = 26/90 (28%), Gaps = 14/90 (15%)
Query: 282 QTVTWGQSVHLSCFVKLPASMANQP-MSWYHYSK---DKGRYQIKFRSDKFIRTVDGGLV 337
V G S C + S AN + W+ +I + + L
Sbjct: 23 VDVQEGSSATFRCRI----SPANYEPVHWFLDKTPLHANELNEIDAQPGGYHV-----LT 73
Query: 338 IMAVEELDAGKYDCWLGNTVLCTHNLTVDA 367
+ + D+G G+ + L V
Sbjct: 74 LRQLALKDSGTIYFEAGDQR-ASAALRVTE 102
>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein
complex, growth factor-receptor complex, TRA hormone
complex; HET: NDG NAG; 2.30A {Homo sapiens}
Length = 289
Score = 43.2 bits (101), Expect = 8e-05
Identities = 15/94 (15%), Positives = 31/94 (32%), Gaps = 11/94 (11%)
Query: 282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAV 341
+ + L+C + P+ W S++ + K + F L + +
Sbjct: 10 LVLNVSSTFVLTCS-------GSAPVVWERMSQEPPQEMAKAQDGTFSSV----LTLTNL 58
Query: 342 EELDAGKYDCWLGNTVLCTHNLTVDAHSNVADAP 375
LD G+Y C ++ + + V D
Sbjct: 59 TGLDTGEYFCTHNDSRGLETDERKRLYIFVPDPT 92
Score = 40.5 bits (94), Expect = 6e-04
Identities = 18/81 (22%), Positives = 31/81 (38%), Gaps = 9/81 (11%)
Query: 281 KQTVTWGQSVHLSCFVKLPASMANQP--MSWYHYSKDKGR--YQIKFRSDKFIRTVDGGL 336
+ V G+++ L C V N+ W + K+ GR + + L
Sbjct: 190 QTVVRQGENITLMCIVI-----GNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRSIL 244
Query: 337 VIMAVEELDAGKYDCWLGNTV 357
I + E D+G Y C + +V
Sbjct: 245 HIPSAELEDSGTYTCNVTESV 265
>2y25_A Myomesin; structural protein, sarcomere, M-BAND,
immunoglobulin-like D; 3.50A {Homo sapiens}
Length = 317
Score = 43.0 bits (101), Expect = 9e-05
Identities = 22/103 (21%), Positives = 35/103 (33%), Gaps = 14/103 (13%)
Query: 280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGG--LV 337
L VT +V L C V + + WY KD+ + + DG L+
Sbjct: 14 LSWEVTGECNVLLKCKVANIKKETH--IVWY---KDEREISVDEK----HDFKDGICTLL 64
Query: 338 IMAVEELDAGKYDCWLGN---TVLCTHNLTVDAHSNVADAPTR 377
I + DAG Y+ L + L +A + +
Sbjct: 65 ITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVCK 107
Score = 39.5 bits (92), Expect = 0.001
Identities = 19/93 (20%), Positives = 33/93 (35%), Gaps = 20/93 (21%)
Query: 282 QTVTWGQSVHLSCFVKLPASMANQPM---SWYHYSK---DKGRYQIKFRSDKFIRTVDGG 335
T+ G++++L+C V P SW K +KF + +
Sbjct: 232 VTIQEGKALNLTCNVW------GDPPPEVSWLKNEKALASDDHCNLKFEAGR-----TAY 280
Query: 336 LVIMAVEELDAGKYDCWLGN---TVLCTHNLTV 365
I V D+GKY + N + ++V
Sbjct: 281 FTINGVSTADSGKYGLVVKNKYGSETSDFTVSV 313
Score = 34.9 bits (80), Expect = 0.031
Identities = 27/133 (20%), Positives = 44/133 (33%), Gaps = 19/133 (14%)
Query: 254 TVFVKVRLLQDVSNTSDSICESSVGRLKQTVTWGQSVHLSCFVKLPASMANQPM--SWYH 311
+ + +++ S LK T + + L FV + + +W H
Sbjct: 90 RLKLVDEAFKELMMEVCKKIALSATDLKIQST-AEGIQLYSFVTY----YVEDLKVNWSH 144
Query: 312 YSKDKGRYQIKFRSDKFIRTVDGG---LVIMAVEELDAGKYDCWLGN---TVLCTHNLTV 365
G I++ SD+ V G L I D GKY L + T +L+
Sbjct: 145 ----NGS-AIRY-SDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSG 198
Query: 366 DAHSNVADAPTRL 378
A+ RL
Sbjct: 199 QAYDEAYAEFQRL 211
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 42.9 bits (101), Expect = 9e-05
Identities = 18/116 (15%), Positives = 32/116 (27%), Gaps = 11/116 (9%)
Query: 262 LQDVSNTSDSICESSVGRLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQI 321
L ++ + C G ++ + C K W S +
Sbjct: 237 LHNIFSLDFFNCSEYKES-AWEAHLGDTLTIRCDTKQQ----GMTKVWVSPS---NEQVL 288
Query: 322 KFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGNTVLCTHNLTVDAHSNVADAPTR 377
S+ + +G L V+ D G Y C+ N T+ V +
Sbjct: 289 SQGSNGSVSVRNGDLFFKKVQVEDGGVYTCYAMGETF---NETLSVELKVYNFTLH 341
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta
trefoil, IG domain, growth factor/growth factor receptor
complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 334
Score = 42.7 bits (100), Expect = 1e-04
Identities = 16/83 (19%), Positives = 25/83 (30%), Gaps = 9/83 (10%)
Query: 283 TVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVE 342
G +V LSC PM + KD + + L ++
Sbjct: 19 VFGSGDAVELSCPPP-----GGGPMGPTVWVKDGTG----LVPSERVLVGPQRLQVLNAS 69
Query: 343 ELDAGKYDCWLGNTVLCTHNLTV 365
D+G Y C T + +V
Sbjct: 70 HEDSGAYSCRQRLTQRVLCHFSV 92
Score = 42.7 bits (100), Expect = 1e-04
Identities = 21/98 (21%), Positives = 29/98 (29%), Gaps = 18/98 (18%)
Query: 282 QTVTWGQSVHLSCFVKLPASMANQP-MSWYHYSKDKGRYQIKFRSDKFIRTVDGG----- 335
QT G V C QP + W + + G + G
Sbjct: 232 QTAVLGSDVEFHC----KVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTD 287
Query: 336 -----LVIMAVEELDAGKYDCWLGNT---VLCTHNLTV 365
L + V DAG+Y C GN+ + L V
Sbjct: 288 KELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVV 325
Score = 35.4 bits (81), Expect = 0.028
Identities = 21/94 (22%), Positives = 33/94 (35%), Gaps = 14/94 (14%)
Query: 282 QTVTWGQSVHLSCFVK-LPASMANQP-MSWYHYSKDKGRYQIKFRSDKFIRTVDGG-LVI 338
V +V C P P +SW K+ ++ + R LV+
Sbjct: 133 LAVPAANTVRFRCPAAGNP-----TPSISWL---KNGREFRGEHRIGGIKLRHQQWSLVM 184
Query: 339 MAVEELDAGKYDCWLGN---TVLCTHNLTVDAHS 369
+V D G Y C + N ++ T+ L V S
Sbjct: 185 ESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERS 218
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 100
Score = 40.1 bits (94), Expect = 1e-04
Identities = 19/89 (21%), Positives = 27/89 (30%), Gaps = 15/89 (16%)
Query: 282 QTVTWGQSVHLSCFVK-LPASMANQP-MSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIM 339
QT+ + L C P P +SW K + R + G L I
Sbjct: 18 QTLAVDGTALLKCKATGDP-----LPVISWL-----KEGFTFPGRDPRATIQEQGTLQIK 67
Query: 340 AVEELDAGKYDCWLGN---TVLCTHNLTV 365
+ D G Y C + + L V
Sbjct: 68 NLRISDTGTYTCVATSSSGETSWSAVLDV 96
>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta
sandwich, immunoglobulin-like, immune system receptor;
1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A
1e4k_C* 1t83_C* 1t89_C* 3ay4_C*
Length = 175
Score = 41.4 bits (97), Expect = 1e-04
Identities = 16/77 (20%), Positives = 26/77 (33%), Gaps = 15/77 (19%)
Query: 282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAV 341
+V SV L C + S + W+H ++ I + I A
Sbjct: 17 YSVLEKDSVTLKC--QGAYSPEDNSTQWFH-------------NESLISSQASSYFIDAA 61
Query: 342 EELDAGKYDCWLGNTVL 358
D+G+Y C + L
Sbjct: 62 TVNDSGEYRCQTNLSTL 78
Score = 34.5 bits (79), Expect = 0.029
Identities = 12/71 (16%), Positives = 21/71 (29%), Gaps = 13/71 (18%)
Query: 281 KQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMA 340
+ +HL C N + Y ++ G+ K+ + I
Sbjct: 97 RWVFKEEDPIHLRCHSW-----KNTALHKVTYLQN-GK-DRKYFHH------NSDFHIPK 143
Query: 341 VEELDAGKYDC 351
D+G Y C
Sbjct: 144 ATLKDSGSYFC 154
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB:
2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Length = 212
Score = 42.1 bits (99), Expect = 1e-04
Identities = 22/96 (22%), Positives = 32/96 (33%), Gaps = 23/96 (23%)
Query: 282 QTVTWGQSVHLSCFVK-LPASMANQP-MSWYH------YSKDKGRYQIKFRSDKFIRTVD 333
+ V ++ + C P P ++W+ S + GR +
Sbjct: 118 KVVERTRTATMLCAASGNP-----DPEITWFKDFLPVDTSNNNGRIKQLRSES------I 166
Query: 334 GGLVIMAVEELDAGKYDCW----LGNTVLCTHNLTV 365
G L I EE D GKY+C G NL V
Sbjct: 167 GALQIEQSEESDQGKYECVATNSAGTRYSAPANLYV 202
Score = 31.3 bits (71), Expect = 0.33
Identities = 20/103 (19%), Positives = 35/103 (33%), Gaps = 19/103 (18%)
Query: 282 QTVTWGQSVHLSCFVK-LPASMANQP-MSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIM 339
QT G C P +P + W K G+ ++ + + I DG ++
Sbjct: 16 QTGVSGGVASFICQATGDP-----RPKIVWN---KK-GK-KVSNQRFEVIEFDDGSGSVL 65
Query: 340 AVEEL----DAGKYDCWLGN---TVLCTHNLTVDAHSNVADAP 375
++ L D Y+C N + + LTV +
Sbjct: 66 RIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGF 108
>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND,
structural protein, muscle, antibo; 1.69A {Homo sapiens}
Length = 97
Score = 39.6 bits (93), Expect = 1e-04
Identities = 21/95 (22%), Positives = 34/95 (35%), Gaps = 16/95 (16%)
Query: 282 QTVTWGQSVHLSCFVK-LPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGG---LV 337
G V C ++ S ++WY G Q++ S+K+ T + G L
Sbjct: 11 AVGEEGGHVKYVCKIENYDQSTQ---VTWY-----FGVRQLE-NSEKYEITYEDGVAILY 61
Query: 338 IMAVEELDAGKYDCWLGN---TVLCTHNLTVDAHS 369
+ + +LD G Y C + N L V
Sbjct: 62 VKDITKLDDGTYRCKVVNDYGEDSSYAELFVKGVR 96
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation,
phosphorylation, disease MU neuronal development,
immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens}
PDB: 2v9q_A
Length = 212
Score = 41.7 bits (98), Expect = 1e-04
Identities = 23/89 (25%), Positives = 31/89 (34%), Gaps = 14/89 (15%)
Query: 282 QTVTWGQSVHLSCFVKLPASMANQPM-SWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMA 340
V G+ + C P +P SW K + D+ I G L+I
Sbjct: 121 VMVAVGEPAVMEC---QPPRGHPEPTISWK-----KDGSPLDD-KDERITIRGGKLMITY 171
Query: 341 VEELDAGKYDCW----LGNTVLCTHNLTV 365
+ DAGKY C +G LTV
Sbjct: 172 TRKSDAGKYVCVGTNMVGERESEVAELTV 200
>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody,
immune system; HET: NAG BMA MAN FUC; 2.20A {Homo
sapiens} PDB: 3sgk_C*
Length = 204
Score = 41.4 bits (97), Expect = 1e-04
Identities = 17/77 (22%), Positives = 26/77 (33%), Gaps = 15/77 (19%)
Query: 282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAV 341
V SV L C + S +Q W+H ++ I + I A
Sbjct: 17 YRVLEKDSVTLKC--QGAYSPEDQSTQWFH-------------NESLISSQASSYFIDAA 61
Query: 342 EELDAGKYDCWLGNTVL 358
D+G+Y C + L
Sbjct: 62 TVDDSGEYRCQTQLSTL 78
Score = 34.1 bits (78), Expect = 0.039
Identities = 12/71 (16%), Positives = 21/71 (29%), Gaps = 13/71 (18%)
Query: 281 KQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMA 340
+ +HL C N + Y ++ G+ K+ + I
Sbjct: 97 RWVFKEEDPIHLRCHSW-----KNTALHKVTYLQN-GK-GRKYFHH------NSDFYIPK 143
Query: 341 VEELDAGKYDC 351
D+G Y C
Sbjct: 144 ATLKDSGSYFC 154
>2kkq_A Myotilin; unknown function, actin-binding, cell membrane,
cytoplasm, cytoskeleton, disease mutation,
immunoglobulin domain; NMR {Homo sapiens}
Length = 116
Score = 40.1 bits (94), Expect = 1e-04
Identities = 24/95 (25%), Positives = 35/95 (36%), Gaps = 19/95 (20%)
Query: 282 QTVTWGQSVHLSCFVK-LPASMANQP-MSWYHYSKDKGRYQIKFRSDKFIRTVDGG---- 335
+ V G SV L C + +P P + W + ++F +D+ D
Sbjct: 25 KKVLEGDSVKLECQISAIP-----PPKLFWK-----RNNEMVQFNTDRISLYQDNTGRVT 74
Query: 336 LVIMAVEELDAGKYDCWLGN---TVLCTHNLTVDA 367
L+I V + DAG Y N C L V A
Sbjct: 75 LLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTA 109
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A
2f8v_A
Length = 194
Score = 41.2 bits (97), Expect = 1e-04
Identities = 21/92 (22%), Positives = 28/92 (30%), Gaps = 19/92 (20%)
Query: 282 QTVTWGQSVHLSCFVK-LPASMANQP-MSWYHYSK---DKGRYQIKFRSDKFIRTVDGGL 336
TV G V L V +P P + +Y +QI D + L
Sbjct: 113 MTVRQGSQVRLQVRVTGIP-----TPVVKFYRDGAEIQSSLDFQISQEGDLYS------L 161
Query: 337 VIMAVEELDAGKYDCWLGN---TVLCTHNLTV 365
+I D+G Y N T L V
Sbjct: 162 LIAEAYPEDSGTYSVNATNSVGRATSTAELLV 193
Score = 35.1 bits (81), Expect = 0.018
Identities = 20/98 (20%), Positives = 29/98 (29%), Gaps = 21/98 (21%)
Query: 282 QTVTWGQSVHLSCFVK-LPASMANQPM-SWYH-----YSKDKGRYQIKFRSDKFIRTVDG 334
V G + + P P SW+ + QI F
Sbjct: 15 VVVLEGSTATFEAHISGFP-----VPEVSWFRDGQVISTSTLPGVQISFSDG------RA 63
Query: 335 GLVIMAVEELDAGKYDCWLGN---TVLCTHNLTVDAHS 369
L I AV + ++G+Y N T L V A +
Sbjct: 64 KLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAET 101
>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion;
2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 184
Score = 41.2 bits (96), Expect = 1e-04
Identities = 10/95 (10%), Positives = 25/95 (26%), Gaps = 11/95 (11%)
Query: 282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAV 341
G + L+C + + ++ + + K +
Sbjct: 8 TVEDLGSKILLTC----SLNDSATEVTGHRWLKGGVVLKED-------ALPGQKTEFKVD 56
Query: 342 EELDAGKYDCWLGNTVLCTHNLTVDAHSNVADAPT 376
+ G+Y C + T N+ + V +
Sbjct: 57 SDDQWGEYSCVFLPEPMGTANIQLHGPPRVKAVKS 91
Score = 37.7 bits (87), Expect = 0.003
Identities = 18/97 (18%), Positives = 37/97 (38%), Gaps = 15/97 (15%)
Query: 282 QTVTWGQSVHLSCFVKLPASMANQPM---SWYHYSKDKGRYQIKFRSDKFIRTVDGG--- 335
+ + G++ L C + + P+ +WY + + + + +F + G
Sbjct: 93 EHINEGETAMLVCKSE-----SVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSE 147
Query: 336 LVIMAVE-ELDAGKYDCWLGNTV---LCTHNLTVDAH 368
L I + E D G+Y C ++ L V +H
Sbjct: 148 LHIENLNMEADPGQYRCNGTSSKGSDQAIITLRVRSH 184
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein;
1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Length = 284
Score = 42.0 bits (99), Expect = 1e-04
Identities = 19/92 (20%), Positives = 34/92 (36%), Gaps = 19/92 (20%)
Query: 282 QTVTWGQSVHLSCFVKLPASMANQPM--SWYHYSK---DKGRYQIKFRSDKFIRTVDGGL 336
+ G+S C V P+ +W ++ G Y++ + L
Sbjct: 15 VDLALGESGTFKCHVT-----GTAPIKITWAKDNREIRPGGNYKMTLVEN------TATL 63
Query: 337 VIMAVEELDAGKYDCWLGN---TVLCTHNLTV 365
++ V + DAG+Y C+ N C+ L V
Sbjct: 64 TVLKVTKGDAGQYTCYASNVAGKDSCSAQLGV 95
Score = 39.7 bits (93), Expect = 8e-04
Identities = 19/95 (20%), Positives = 37/95 (38%), Gaps = 21/95 (22%)
Query: 282 QTVTWGQSVHLSCFVK---LPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGG--- 335
G VHL C ++ +SW+ K + +++ K+ +
Sbjct: 202 VETLKGADVHLECELQGTPPFQ------VSWH-----KDKRELR-SGKKYKIMSENFLTS 249
Query: 336 LVIMAVEELDAGKYDCWLGN---TVLCTHNLTVDA 367
+ I+ V+ D G+Y C N + C ++T+ A
Sbjct: 250 IHILNVDSADIGEYQCKASNDVGSYTCVGSITLKA 284
Score = 37.0 bits (86), Expect = 0.006
Identities = 14/92 (15%), Positives = 30/92 (32%), Gaps = 19/92 (20%)
Query: 282 QTVTWGQSVHLSCFVK-LPASMANQP-MSWYHYSK---DKGRYQIKFRSDKFIRTVDGGL 336
+ V + C + P + + WY + ++++ F L
Sbjct: 109 RIVKQDEHTRYECKIGGSP-----EIKVLWYKDETEIQESSKFRMSFVES------VAVL 157
Query: 337 VIMAVEELDAGKYDCWLGN---TVLCTHNLTV 365
+ + D+G Y C N + + +L V
Sbjct: 158 EMYNLSVEDSGDYTCEAHNAAGSASSSTSLKV 189
>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle
isozymes; IG fold, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: b.1.1.4
Length = 114
Score = 40.0 bits (94), Expect = 2e-04
Identities = 19/92 (20%), Positives = 31/92 (33%), Gaps = 19/92 (20%)
Query: 282 QTVTWGQSVHLSCFVK-LPASMANQP-MSWYHYSK---DKGRYQIKFRSDKFIRTVDGGL 336
Q V G+SV L V +W + K + +++ + L
Sbjct: 17 QKVRAGESVELFGKVTGTQ-----PITCTWMKFRKQIQESEHMKVENSENGSK------L 65
Query: 337 VIMAVEELDAGKYDCWLGN---TVLCTHNLTV 365
I+A + G Y + N + NLTV
Sbjct: 66 TILAARQEHCGCYTLLVENKLGSRQAQVNLTV 97
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system;
HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Length = 262
Score = 41.8 bits (98), Expect = 2e-04
Identities = 16/76 (21%), Positives = 25/76 (32%), Gaps = 9/76 (11%)
Query: 282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAV 341
+ G V LSC KL +P ++S G ++ R+ I+
Sbjct: 180 SPLLEGNLVTLSCETKLLLQ---RPGLQLYFSFYMGSKTLRGRNT------SSEYQILTA 230
Query: 342 EELDAGKYDCWLGNTV 357
D+G Y C
Sbjct: 231 RREDSGLYWCEAATED 246
Score = 39.1 bits (91), Expect = 0.001
Identities = 13/75 (17%), Positives = 23/75 (30%), Gaps = 15/75 (20%)
Query: 282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAV 341
+V ++V L C V + W+ +T I +
Sbjct: 11 VSVFQEETVTLHCEV--LHLPGSSSTQWFLN-------------GTATQTSTPSYRITSA 55
Query: 342 EELDAGKYDCWLGNT 356
D+G+Y C G +
Sbjct: 56 SVNDSGEYRCQRGLS 70
Score = 38.4 bits (89), Expect = 0.002
Identities = 12/70 (17%), Positives = 22/70 (31%), Gaps = 13/70 (18%)
Query: 282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAV 341
+ T G+ + L C ++ + Y ++ KF + L I+
Sbjct: 92 RVFTEGEPLALRCHAW-----KDKLVYNVLYYRNGK--AFKFFHW------NSNLTILKT 138
Query: 342 EELDAGKYDC 351
G Y C
Sbjct: 139 NISHNGTYHC 148
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane,
phosphorylation, immunoglobulin domain, membrane,
glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB: 2xy1_A*
Length = 192
Score = 41.3 bits (97), Expect = 2e-04
Identities = 18/98 (18%), Positives = 33/98 (33%), Gaps = 12/98 (12%)
Query: 277 VGRLKQTVTWGQSVHLSCFVKLPASMANQP-MSWYHYSK----DKGRYQIKFRSDKFIRT 331
+ +T V L C A P ++W +G + R + +
Sbjct: 99 IQLKNETTYENGQVTLVC----DAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQH 154
Query: 332 VDGGLVIMAVEELDAGKYDCWLGN---TVLCTHNLTVD 366
L I V+ D+G+YDC + + L ++
Sbjct: 155 GSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIE 192
Score = 39.4 bits (92), Expect = 6e-04
Identities = 15/72 (20%), Positives = 27/72 (37%), Gaps = 12/72 (16%)
Query: 282 QTVTWGQSVHLSCFVK-LPASMANQP-MSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIM 339
T G+ + SC P +P +SW+ G+ I+ ++ + L +
Sbjct: 14 ATAERGEEMTFSCRASGSP-----EPAISWFR----NGK-LIEENEKYILKGSNTELTVR 63
Query: 340 AVEELDAGKYDC 351
+ D G Y C
Sbjct: 64 NIINSDGGPYVC 75
>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 106
Score = 39.7 bits (93), Expect = 2e-04
Identities = 19/88 (21%), Positives = 26/88 (29%), Gaps = 14/88 (15%)
Query: 282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGG---LVI 338
TV + C V S WY K +++ S + + G LVI
Sbjct: 18 LTVKAAEQAVFKCEV----SDEKVTGKWY-----KNGVEVRP-SKRITISHVGRFHKLVI 67
Query: 339 MAVEELDAGKYDCWLGNTVL-CTHNLTV 365
V D G Y L + L
Sbjct: 68 DDVRPEDEGDYTFVPDGYALSLSAKLNF 95
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer,
immunoglobul domain, muscle protein, thick filament,
contractIle protein; 2.24A {Homo sapiens}
Length = 212
Score = 41.4 bits (97), Expect = 2e-04
Identities = 20/92 (21%), Positives = 35/92 (38%), Gaps = 18/92 (19%)
Query: 282 QTVTWGQSVHLSCFVK-LPASMANQP-MSWYHYSK---DKGRYQIKFRSDKFIRTVDGGL 336
T+ G++++L+C V P P +SW K +KF + +
Sbjct: 127 VTIQEGKALNLTCNVWGDPP-----PEVSWLKNEKALAQTDHCNLKFEAGRTAY-----F 176
Query: 337 VIMAVEELDAGKYDCWLGN---TVLCTHNLTV 365
I V D+GKY + N + ++V
Sbjct: 177 TINGVSTADSGKYGLVVKNKYGSETSDFTVSV 208
Score = 39.9 bits (93), Expect = 6e-04
Identities = 23/100 (23%), Positives = 35/100 (35%), Gaps = 18/100 (18%)
Query: 287 GQSVHLSCFVKLPASMANQPM--SWYHYSKDKGRYQIKFRSDKFIRTVDGG---LVIMAV 341
+ + L FV + + +W H G I++ SD+ V G L I
Sbjct: 17 AEGIQLYSFVT----YYVEDLKVNWSH----NGS-AIRY-SDRVKTGVTGEQIWLQINEP 66
Query: 342 EELDAGKYDCWLGN---TVLCTHNLTVDAHSNVADAPTRL 378
D GKY L + T +L+ A+ RL
Sbjct: 67 TPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRL 106
>2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell immunoglobulin
mucin, signaling protein; 1.95A {Mus musculus} PDB:
3kaa_A*
Length = 109
Score = 39.5 bits (92), Expect = 2e-04
Identities = 22/89 (24%), Positives = 29/89 (32%), Gaps = 24/89 (26%)
Query: 283 TVTWGQSVHLSCFVKLPASMANQPMSWY--------------------HYSKDKGRYQIK 322
V G++ +L C LP S PM W + RYQ+K
Sbjct: 5 KVEVGKNAYLPCSYTLPTSGTLVPMCWGKGFCPWSQCTNELLRTDERNVTYQKSSRYQLK 64
Query: 323 FRSDKFIRTVDGGLVIMAVEELDAGKYDC 351
+ D L+I V D G Y C
Sbjct: 65 GD----LNKGDVSLIIKNVTLDDHGTYCC 89
>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase,
heparin-binding, nucleotide-binding, immunoglobulin
domain, alternatice splicing; NMR {Mus musculus}
Length = 95
Score = 39.0 bits (91), Expect = 2e-04
Identities = 13/87 (14%), Positives = 28/87 (32%), Gaps = 14/87 (16%)
Query: 282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAV 341
V G + L C ++ Q ++W +D ++ R + +
Sbjct: 19 LLVHPGDLLQLRCRLRDDV----QSINWL---RD----GVQLVESNRTRITGEEVEVRDS 67
Query: 342 EELDAGKYDCWLGN---TVLCTHNLTV 365
D+G Y C + + ++ V
Sbjct: 68 IPADSGLYACVTSSPSGSDTTYFSVNV 94
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane,
transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo
sapiens}
Length = 291
Score = 41.7 bits (98), Expect = 2e-04
Identities = 15/99 (15%), Positives = 29/99 (29%), Gaps = 16/99 (16%)
Query: 282 QTVTWGQSVHLSCFVK-LPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGG---LV 337
++ G+S +C P + + WY+ + + + + +G L
Sbjct: 14 VELSVGESKFFTCTAIGEP-----ESIDWYN--PQG---EKIISTQRVVVQKEGVRSRLT 63
Query: 338 IMAVEELDAGKYDCWLGNTVLCTHNLTVDAHSNVADAPT 376
I DAG Y C + + T
Sbjct: 64 IYNANIEDAGIYRCQATDAK--GQTQEATVVLEIYQKLT 100
Score = 41.0 bits (96), Expect = 4e-04
Identities = 18/88 (20%), Positives = 31/88 (35%), Gaps = 13/88 (14%)
Query: 282 QTVTWGQSVHLSCFVKLPASMANQP-MSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMA 340
T G+ + SC AS + +P +SW+ + I+ ++ + L +
Sbjct: 204 ATAERGEEMTFSC----RASGSPEPAISWF-----RNGKLIEENEKYILKGSNTELTVRN 254
Query: 341 VEELDAGKYDCWLGN---TVLCTHNLTV 365
+ D G Y C N L V
Sbjct: 255 IINSDGGPYVCRATNKAGEDEKQAFLQV 282
Score = 37.5 bits (87), Expect = 0.004
Identities = 15/72 (20%), Positives = 25/72 (34%), Gaps = 11/72 (15%)
Query: 282 QTVTWGQSVHLSCFVK-LPASMANQP-MSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIM 339
Q G+ + C V P P +SW + ++F + L I+
Sbjct: 108 QEFKQGEDAEVVCRVSSSP-----APAVSWLY----HNEEVTTISDNRFAMLANNNLQIL 158
Query: 340 AVEELDAGKYDC 351
+ + D G Y C
Sbjct: 159 NINKSDEGIYRC 170
>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain,
immunoglobulin fold, alternative splicing, signal,
muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB:
1ncu_A 1tnm_A 1tnn_A
Length = 106
Score = 39.3 bits (92), Expect = 2e-04
Identities = 19/92 (20%), Positives = 29/92 (31%), Gaps = 19/92 (20%)
Query: 282 QTVTWGQSVHLSCFVK-LPASMANQP-MSWYHYSKD---KGRYQIKFRSDKFIRTVDGGL 336
TV G+S SC P P ++W + R+Q+
Sbjct: 24 MTVYEGESARFSCDTDGEP-----VPTVTWLRKGQVLSTSARHQVTTTKY------KSTF 72
Query: 337 VIMAVEELDAGKYDCWLGN---TVLCTHNLTV 365
I +V+ D G Y + N LT+
Sbjct: 73 EISSVQASDEGNYSVVVENSEGKQEAEFTLTI 104
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo
sapiens} PDB: 3p40_A*
Length = 404
Score = 41.8 bits (98), Expect = 2e-04
Identities = 12/89 (13%), Positives = 23/89 (25%), Gaps = 14/89 (15%)
Query: 282 QTVTWGQSVHLSCFVK-LPASMANQP-MSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIM 339
+ G+ L C P +P + W G + ++
Sbjct: 322 LILAPGEDGRLVCRANGNP-----KPTVQWMV----NGEPLQSAPPNPNREVAGDTIIFR 372
Query: 340 AVEELDAGKYDCWLGN---TVLCTHNLTV 365
+ Y C N +L ++V
Sbjct: 373 DTQISSRAVYQCNTSNEHGYLLANAFVSV 401
Score = 41.4 bits (97), Expect = 3e-04
Identities = 30/133 (22%), Positives = 47/133 (35%), Gaps = 19/133 (14%)
Query: 243 IVYFAATTTLRT---VFVKVRLLQDVSNTSDSICESSVGRLKQTVTWGQSVHLSCFVK-L 298
F T T++ +KV + V+ + S Q V G + L C +
Sbjct: 190 NARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGV 249
Query: 299 PASMANQP-MSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGN-- 355
P P ++WY K G + L I V E D+G+Y C N
Sbjct: 250 PT-----PDIAWY---KKGGDLP---SDKAKFENFNKALRITNVSEEDSGEYFCLASNKM 298
Query: 356 -TVLCTHNLTVDA 367
++ T ++ V A
Sbjct: 299 GSIRHTISVRVKA 311
Score = 38.7 bits (90), Expect = 0.002
Identities = 15/124 (12%), Positives = 26/124 (20%), Gaps = 17/124 (13%)
Query: 253 RTVFVKVRLLQDVSNTSDSICESSVGRLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHY 312
+ ++V + V G + L C P P +
Sbjct: 106 NRIRLQVSKSPLWPKENLD---------PVVVQEGAPLTLQCNP--PPG---LPSPVIFW 151
Query: 313 SKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDA-GKYDCWLGNTVLCTHNLTVDAHSNV 371
+ + + + +G L V D Y C T V
Sbjct: 152 MSS--SMEPITQDKRVSQGHNGDLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKV 209
Query: 372 ADAP 375
Sbjct: 210 LTTR 213
Score = 29.1 bits (65), Expect = 2.3
Identities = 15/76 (19%), Positives = 23/76 (30%), Gaps = 14/76 (18%)
Query: 282 QTVTWGQSVHLSCFVKLPASMANQPM--SWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIM 339
V ++ + C K N W ++ + I +R G LVI
Sbjct: 27 HIVDPRDNILIECEAK-----GNPAPSFHWT---RNSRFFNIAKDPRVSMRRRSGTLVID 78
Query: 340 AVE----ELDAGKYDC 351
E G+Y C
Sbjct: 79 FRSGGRPEEYEGEYQC 94
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A
{Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
b.1.1.4
Length = 395
Score = 41.4 bits (97), Expect = 3e-04
Identities = 26/149 (17%), Positives = 44/149 (29%), Gaps = 15/149 (10%)
Query: 226 LVVDVVQYEVFGTTSEY--IVYFAATTTLRT-VFVKVRLLQDVSNTSDSICESSVGRLKQ 282
L +V E +Y AA V +++ + ++
Sbjct: 163 LYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDM 222
Query: 283 TVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGR--YQIKFRSDKFIRTVDGGLVIMA 340
G + C +N PM + +Y K+ + R + RT L+
Sbjct: 223 MAKAGDVTMIYCMYG-----SN-PMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKT 276
Query: 341 VEELDAGKYDCW----LGNTVLCTHNLTV 365
D G Y C +G + LTV
Sbjct: 277 TLPEDEGVYTCEVDNGVGKPQKHSLKLTV 305
Score = 41.0 bits (96), Expect = 4e-04
Identities = 26/93 (27%), Positives = 33/93 (35%), Gaps = 22/93 (23%)
Query: 281 KQTVTWGQSVHLSCFVK-LPASMANQP-MSWYHYSK--DKGRYQIKFRSDKFIRTVDGGL 336
V GQ V + C V LP P + W H +K GR + D GL
Sbjct: 318 VIVVKQGQDVTIPCKVTGLP-----APNVVWSHNAKPLSGGRATVT----------DSGL 362
Query: 337 VIMAVEELDAGKYDCWLGN---TVLCTHNLTVD 366
VI V+ D G Y C N + V+
Sbjct: 363 VIKGVKNGDKGYYGCRATNEHGDKYFETLVQVN 395
Score = 37.6 bits (87), Expect = 0.006
Identities = 15/73 (20%), Positives = 23/73 (31%), Gaps = 12/73 (16%)
Query: 282 QTVTWGQSVHLSCFVK---LPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVI 338
L C ++ SW KD G+ + +R +G LV
Sbjct: 16 VLFRENNPTVLECIIEGNDQGVKY-----SWK---KD-GKSYNWQEHNAALRKDEGSLVF 66
Query: 339 MAVEELDAGKYDC 351
+ + D G Y C
Sbjct: 67 LRPQASDEGHYQC 79
Score = 34.5 bits (79), Expect = 0.044
Identities = 16/80 (20%), Positives = 25/80 (31%), Gaps = 6/80 (7%)
Query: 282 QTVTWGQSVHLSCFVKLPASMANQPMSWYH-YSKDKGRYQIKFRSDKFIRTVDGGLVIMA 340
+T G+ L C + P + ++W S + + DG L
Sbjct: 110 KTPIEGRPFQLDCVL--PNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTI 167
Query: 341 VEELDA---GKYDCWLGNTV 357
V + D KY C N
Sbjct: 168 VTKEDVSDIYKYVCTAKNAA 187
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor
protein tyrosine phosphatase; HET: NAG; 2.00A {Mus
musculus} PDB: 3jxa_A*
Length = 384
Score = 41.4 bits (97), Expect = 3e-04
Identities = 24/105 (22%), Positives = 37/105 (35%), Gaps = 16/105 (15%)
Query: 253 RTVFVKVRLLQDVSNTSDSICESSVGRLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHY 312
R ++ L++ + S +V GQ + L C P +W
Sbjct: 92 REAKLQFAYLENFKTRTRS---------TVSVRRGQGMVLLCGP--PPHSGELSYAWI-- 138
Query: 313 SKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGNTV 357
Y + +F+ G L I VE+ D G Y C + NTV
Sbjct: 139 ---FNEYPSYQDNRRFVSQETGNLYIAKVEKSDVGNYTCVVTNTV 180
Score = 39.8 bits (93), Expect = 0.001
Identities = 21/100 (21%), Positives = 32/100 (32%), Gaps = 12/100 (12%)
Query: 282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAV 341
G +V L CF N P+ + + G+ +G L I
Sbjct: 215 VPAEKGTTVKLECFAL-----GN-PVPTILWRRADGK---PIARKARRHKSNGILEIPNF 265
Query: 342 EELDAGKYDCWLGN---TVLCTHNLTVDAHSNVADAPTRL 378
++ DAG Y+C N + LT A N +
Sbjct: 266 QQEDAGSYECVAENSRGKNVAKGQLTFYAQPNWVQIINDI 305
Score = 36.7 bits (85), Expect = 0.010
Identities = 23/94 (24%), Positives = 30/94 (31%), Gaps = 23/94 (24%)
Query: 282 QTVTWGQSVHLSCFVK-LPASMANQP-MSWYHYSK---DKGRYQIKFRSDKFIRTVDGGL 336
V +SV C P +P W + R QI+ G L
Sbjct: 305 IHVAMEESVFWECKANGRP-----KPTYRWLKNGDPLLTRDRIQIE----------QGTL 349
Query: 337 VIMAVEELDAGKYDCWLGN---TVLCTHNLTVDA 367
I V DAG Y C N + + L+V A
Sbjct: 350 NITIVNLSDAGMYQCVAENKHGVIFSSAELSVIA 383
>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain,
cell adhesion, cell junction, glycoprotein,
immunoglobulin domain, membrane; HET: NAG FUC; 2.19A
{Mus musculus} PDB: 3mj7_A* 3mj9_A*
Length = 268
Score = 40.6 bits (94), Expect = 4e-04
Identities = 18/87 (20%), Positives = 28/87 (32%), Gaps = 17/87 (19%)
Query: 282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDK-----------------GRYQIKFR 324
V G+SV + C V+ + W GR+Q +
Sbjct: 15 LRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSH 74
Query: 325 SDKFIRTVDGGLVIMAVEELDAGKYDC 351
DG L++ V++ D G Y C
Sbjct: 75 LVGDTFHNDGSLLLQDVQKADEGIYTC 101
Score = 37.5 bits (86), Expect = 0.005
Identities = 19/108 (17%), Positives = 33/108 (30%), Gaps = 24/108 (22%)
Query: 282 QTVTWGQSVHLSCFVKLPASMANQPMSWY---------------------HYSKDKGRYQ 320
V G + + C ++ ++W + GR++
Sbjct: 128 LRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFR 187
Query: 321 IKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGNTVL---CTHNLTV 365
+ I DG + + V+E D G Y C + L T L V
Sbjct: 188 NRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHV 235
>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo
sapiens}
Length = 103
Score = 38.4 bits (90), Expect = 4e-04
Identities = 19/94 (20%), Positives = 27/94 (28%), Gaps = 19/94 (20%)
Query: 282 QTVTWGQSVHLSCFVK-LPASMANQP-MSWYHYSKDKGRYQIKFRSDKFIRTVDGG---L 336
V GQ+ V+ P + WY +++ S K T G L
Sbjct: 18 HRVPCGQNTRFILNVQSKP-----TAEVKWY-----HNGVELQ-ESSKIHYTNTSGVLTL 66
Query: 337 VIMAVEELDAGKYDCWLGN---TVLCTHNLTVDA 367
I+ D+G Y N L V
Sbjct: 67 EILDCHTDDSGTYRAVCTNYKGEASDYATLDVTG 100
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil,
immunoglobulin, immune system, extracellular; HET: NAG;
3.10A {Homo sapiens} PDB: 3o4o_B*
Length = 349
Score = 41.0 bits (95), Expect = 5e-04
Identities = 23/109 (21%), Positives = 36/109 (33%), Gaps = 13/109 (11%)
Query: 283 TVTWGQSVHLSC-----FVKLPASMANQP---MSWYHYSKDKGRYQ--IKFRSDKFIRTV 332
V + + C F+K S A+ + WY +D+ + + I
Sbjct: 18 QVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKE 77
Query: 333 DGGLVIMAVEELDAGKYDCWLGNTVLC---THNLTVDAHSNVADAPTRL 378
L D G Y C L NT C L V + ++P +L
Sbjct: 78 KDVLWFRPTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKL 126
Score = 31.8 bits (71), Expect = 0.33
Identities = 13/106 (12%), Positives = 25/106 (23%), Gaps = 11/106 (10%)
Query: 248 ATTTLRTVFVKVRLLQDVSNTSDSICESSVGRLKQTVTWGQSVHLSC--FVKLPASMANQ 305
T V L +V + + ++C S
Sbjct: 98 LRNTTYCSKVAFPL--EVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKP 155
Query: 306 PMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDC 351
++WY K ++ + L + + G Y C
Sbjct: 156 TITWYMGCY-------KIQNFNNVIPEGMNLSFLIALISNNGNYTC 194
>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology,
IGSF, cell SU receptor signalling, glycosylation,
membrane protein; HET: NAG; 2.90A {Homo sapiens}
Length = 118
Score = 38.7 bits (90), Expect = 5e-04
Identities = 14/86 (16%), Positives = 32/86 (37%), Gaps = 17/86 (19%)
Query: 283 TVTWGQSVHLSCFVKLPASMANQ--PMSWYH---------YSKDKG-----RYQIKFRSD 326
G SV L C++++P ++W + + +G +++F +
Sbjct: 11 PGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAA 70
Query: 327 KFIRTV-DGGLVIMAVEELDAGKYDC 351
+ + + L + + D G Y C
Sbjct: 71 RLGAELRNASLRMFGLRVEDEGNYTC 96
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain,
vegfr-2, growth factor receptor, VEGF LI
hormone-signaling protein complex, angiogenesis; 3.20A
{Homo sapiens} PDB: 3v6b_R
Length = 772
Score = 41.3 bits (96), Expect = 5e-04
Identities = 18/90 (20%), Positives = 30/90 (33%), Gaps = 15/90 (16%)
Query: 281 KQTVTWGQSVHLSCFVKLPASMANQPM--SWYHYSKDKGRYQIKFRSDKFIRTVDGGLVI 338
QT + G+S+ +SC N P W+ K + S ++ + L I
Sbjct: 675 NQTTSIGESIEVSCTAS-----GNPPPQIMWF-----KDNETLVEDSGIVLKDGNRNLTI 724
Query: 339 MAVEELDAGKYDCWLGN---TVLCTHNLTV 365
V + D G Y C + +
Sbjct: 725 RRVRKEDEGLYTCQACSVLGCAKVEAFFII 754
Score = 39.4 bits (91), Expect = 0.002
Identities = 18/130 (13%), Positives = 39/130 (30%), Gaps = 15/130 (11%)
Query: 247 AATTTLRTVFVKVRLLQDVSNTSDSICESSVGRLKQTVTWGQSVHLSCFVKLPASMANQP 306
++ V+V+ +++ SD G + T ++V + C + N
Sbjct: 108 TDLASVIYVYVQDYRSPFIASVSDQH-----GVVYITENKNKTVVIPCLGSIS----NLN 158
Query: 307 MSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDC---WLGNTVLCTHNL 363
+S +K + ++ G I + AG C + +
Sbjct: 159 VSLCARYPEK---RFVPDGNRISWDSKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYI 215
Query: 364 TVDAHSNVAD 373
V + D
Sbjct: 216 VVVVGYRIYD 225
Score = 38.6 bits (89), Expect = 0.003
Identities = 14/102 (13%), Positives = 30/102 (29%), Gaps = 16/102 (15%)
Query: 282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKD---KGRYQIKFRSDKFIRTVDGGLVI 338
T+ ++ ++C + + W + + R ++ SD L I
Sbjct: 41 LTIKANTTLQITC-------RGQRDLDWLWPNNQSGSEQRVEVTECSDGLFCKT---LTI 90
Query: 339 MAVEELDAGKYDCWLGN---TVLCTHNLTVDAHSNVADAPTR 377
V D G Y C+ + + +A +
Sbjct: 91 PKVIGNDTGAYKCFYRETDLASVIYVYVQDYRSPFIASVSDQ 132
Score = 36.7 bits (84), Expect = 0.013
Identities = 19/93 (20%), Positives = 28/93 (30%), Gaps = 18/93 (19%)
Query: 282 QTVTWGQSVHLSCFVKLPASMANQPM--SWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIM 339
T G+ V + P WY S+ I+ L IM
Sbjct: 340 VEATVGERVRIPAKYL-----GYPPPEIKWYKNGI-------PLESNHTIKA-GHVLTIM 386
Query: 340 AVEELDAGKYDCWLGN---TVLCTHNLTVDAHS 369
V E D G Y L N +H +++ +
Sbjct: 387 EVSERDTGNYTVILTNPISKEKQSHVVSLVVYV 419
Score = 35.5 bits (81), Expect = 0.032
Identities = 16/93 (17%), Positives = 32/93 (34%), Gaps = 11/93 (11%)
Query: 282 QTVTWGQSVHLSCFVK-LPASMANQPMSWYHYSKDKGRY-----QIKFRSDKFIRTVDGG 335
++ G+ + L+C + + +W + S +K +S ++
Sbjct: 234 IELSVGEKLVLNCTARTELNVGID--FNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLST 291
Query: 336 LVIMAVEELDAGKYDCWLGN---TVLCTHNLTV 365
L I V D G Y C + T + + V
Sbjct: 292 LTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRV 324
Score = 31.3 bits (70), Expect = 0.64
Identities = 15/111 (13%), Positives = 23/111 (20%), Gaps = 21/111 (18%)
Query: 281 KQTVTWGQSVHLSCFVK----------------LPASMANQPMSWYHYSKDKGRYQIKFR 324
T +SV L C LP + P +
Sbjct: 558 DMQPTEQESVSLWCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMF 617
Query: 325 SDKFIRTVDGGLVIMAVEELDAGKYDCWLGN---TVLCTHNLTVDAHSNVA 372
S+ + + D G Y C + + VA
Sbjct: 618 SNSTNDI--LIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLERVA 666
Score = 29.3 bits (65), Expect = 2.4
Identities = 16/137 (11%), Positives = 33/137 (24%), Gaps = 31/137 (22%)
Query: 271 SICESSVGRLKQTVTWGQSVHLSCFVK-------------------------LPASMANQ 305
I E S+ + +G + L+C V + +
Sbjct: 422 QIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYP 481
Query: 306 PMSWYHYSKDKGRYQIKFRSDKFIRTVDGG---LVIMAVEELDAGKYDCWLGN---TVLC 359
W +G +I+ ++F ++ + Y C N
Sbjct: 482 CEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGRGER 541
Query: 360 THNLTVDAHSNVADAPT 376
+ V + P
Sbjct: 542 VISFHVTRGPEITLQPD 558
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL
structural protein; 3.30A {Oryctolagus cuniculus}
Length = 570
Score = 40.9 bits (96), Expect = 5e-04
Identities = 23/91 (25%), Positives = 32/91 (35%), Gaps = 16/91 (17%)
Query: 282 QTVTWGQSVHLSCFVKLPASMANQP-MSWYHYSKDKGRYQIKFRSDKFIRTVDGG---LV 337
+ G+ V L A ++W+ KDKG I SD + L
Sbjct: 487 ISTVVGEEVQLQA----TIEGAEPISVAWF---KDKGE--IVRESDNIWISYSENIATLQ 537
Query: 338 IMAVEELDAGKYDCWLGNTV---LCTHNLTV 365
E +AGKY C + N C L+V
Sbjct: 538 FSRAEPANAGKYTCQIKNEAGTQECFATLSV 568
Score = 39.8 bits (93), Expect = 0.001
Identities = 18/92 (19%), Positives = 33/92 (35%), Gaps = 19/92 (20%)
Query: 282 QTVTWGQSVHLSCFVK-LPASMANQP-MSWYHYSK---DKGRYQIKFRSDKFIRTVDGGL 336
+ G+S C V ++W ++ G Y++ + L
Sbjct: 207 VDLALGESGTFKCHVTGTA-----PIKITWAKDNREIRPGGNYKMTLVEN------TATL 255
Query: 337 VIMAVEELDAGKYDCWLGNTV---LCTHNLTV 365
++ V + DAG+Y C+ N C+ L V
Sbjct: 256 TVLKVTKGDAGQYTCYASNVAGKDSCSAQLGV 287
Score = 38.6 bits (90), Expect = 0.003
Identities = 16/82 (19%), Positives = 25/82 (30%), Gaps = 18/82 (21%)
Query: 282 QTVTWGQSVHLSCFVKLPASMANQPM---SWYHYSK---DKGRYQIKFRSDKFIRTVDGG 335
T G V C + SWY + D Q F +
Sbjct: 111 VHETLGFPVAFECRIN------GSEPLQVSWYKDGELLKDDANLQTSFIHN------VAT 158
Query: 336 LVIMAVEELDAGKYDCWLGNTV 357
L I+ ++ G+Y+C N +
Sbjct: 159 LQILQTDQSHVGQYNCSASNPL 180
Score = 37.1 bits (86), Expect = 0.008
Identities = 19/89 (21%), Positives = 31/89 (34%), Gaps = 13/89 (14%)
Query: 282 QTVTWGQSVHLSCFVK-LPASMANQPM-SWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIM 339
G+ + L C V P + +WY K+ + + + LVI
Sbjct: 15 VEAAIGEPITLQCKVDGTP-----EIRIAWY---KEHTKLRSAPAYKMQFKNNVASLVIN 66
Query: 340 AVEELDAGKYDCWLGN---TVLCTHNLTV 365
V+ D G+Y C N V + L +
Sbjct: 67 KVDHSDVGEYTCKAENSVGAVASSAVLVI 95
Score = 37.1 bits (86), Expect = 0.009
Identities = 19/94 (20%), Positives = 34/94 (36%), Gaps = 17/94 (18%)
Query: 281 KQTVTWGQSVHLSCFVKLPASMANQPM-SWYHYSKDKGRYQIKFRSDKFIRTVDGG---L 336
G VHL C SW+ K + +++ K+ + +
Sbjct: 393 PVETLKGADVHLEC----ELQGTPPFQVSWH-----KDKRELR-SGKKYKIMSENFLTSI 442
Query: 337 VIMAVEELDAGKYDCWLGN---TVLCTHNLTVDA 367
I+ V+ D G+Y C N + C ++T+ A
Sbjct: 443 HILNVDSADIGEYQCKASNDVGSDTCVGSITLKA 476
Score = 34.4 bits (79), Expect = 0.063
Identities = 13/95 (13%), Positives = 29/95 (30%), Gaps = 19/95 (20%)
Query: 281 KQTVTWGQSVHLSCFVKLPASMANQPMS--WYHYSK---DKGRYQIKFRSDKFIRTVDGG 335
+ V + C + + + WY + ++++ F
Sbjct: 300 SRIVKQDEHTRYECKIG-----GSPEIKVLWYKDETEIQESSKFRMSFVES------VAV 348
Query: 336 LVIMAVEELDAGKYDCWLGN---TVLCTHNLTVDA 367
L + + D+G Y C N + + +L V
Sbjct: 349 LEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKE 383
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling
protein,transferase; 2.21A {Rattus norvegicus}
Length = 192
Score = 39.7 bits (93), Expect = 5e-04
Identities = 17/81 (20%), Positives = 27/81 (33%), Gaps = 17/81 (20%)
Query: 281 KQTVTWGQSVHLSCFVKLPASMANQP-MSWYHYSK---DKGRYQIKFRSDKFIRTVDGGL 336
+ G L C +P +SW + R + G L
Sbjct: 109 NVKIIEGLKAVLPC----TTMGNPKPSVSWIKGDSALRENSRIAV---------LESGSL 155
Query: 337 VIMAVEELDAGKYDCWLGNTV 357
I V++ DAG+Y C N++
Sbjct: 156 RIHNVQKEDAGQYRCVAKNSL 176
Score = 37.4 bits (87), Expect = 0.004
Identities = 22/91 (24%), Positives = 34/91 (37%), Gaps = 17/91 (18%)
Query: 282 QTVTWGQSVHLSCFVK-LPASMANQP-MSWYHYSKDKGRYQIKFRSDKFIRTVDGG-LVI 338
+ C V+ P QP +SW + + IK ++ +G L I
Sbjct: 17 VDALVEEVATFMCAVESYP-----QPEISWT-----RNKILIKLFDTRYSIRENGQLLTI 66
Query: 339 MAVEELDAGKYDC----WLGNTVLCTHNLTV 365
++VE+ D G Y C +G V L V
Sbjct: 67 LSVEDSDDGIYCCTANNGVGGAVESCGALQV 97
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Length = 305
Score = 40.5 bits (95), Expect = 5e-04
Identities = 22/95 (23%), Positives = 37/95 (38%), Gaps = 17/95 (17%)
Query: 282 QTVTWGQSVHLSCFVKLPASMANQPM-SWYHYSKDKGRYQIKFRSDKF-IRTVDGG---L 336
V + + L C + +P+ WY + +I K+ I+ GG L
Sbjct: 14 LNVRYQSNATLVC----KVTGHPKPIVKWY-----RQGKEIIADGLKYRIQEFKGGYHQL 64
Query: 337 VIMAVEELDAGKYDCWLGN---TVLCTHNLTVDAH 368
+I +V + DA Y N +V T +L V+
Sbjct: 65 IIASVTDDDATVYQVRATNQGGSVSGTASLEVEVP 99
Score = 31.7 bits (72), Expect = 0.34
Identities = 15/74 (20%), Positives = 22/74 (29%), Gaps = 13/74 (17%)
Query: 282 QTVTWGQSVHLSCFVKLPASMANQP-MSWYHYSK---DKGRYQIKFRSDKFIRTVDGGLV 337
G+ V + P S P ++W + G YQ+ +
Sbjct: 114 VHALRGEVVSIKI----PFSGKPDPVITWQKGQDLIDNNGHYQVIVTRS-----FTSLVF 164
Query: 338 IMAVEELDAGKYDC 351
VE DAG Y
Sbjct: 165 PNGVERKDAGFYVV 178
>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 110
Score = 38.1 bits (89), Expect = 6e-04
Identities = 24/102 (23%), Positives = 35/102 (34%), Gaps = 19/102 (18%)
Query: 282 QTVTWGQSVHLSCFVK-LPASMANQP-MSWYHYSKDKGRYQIKFRSDKFIRTVDGG---- 335
+ G V +C V P +P + W+ K QI +SD + D
Sbjct: 18 YKIFEGMPVTFTCRVAGNP-----KPKIYWF-----KDGKQISPKSDHYTIQRDLDGTCS 67
Query: 336 LVIMAVEELDAGKYDCWLGN---TVLCTHNLTVDAHSNVADA 374
L A D G Y N + CT L V A ++ +
Sbjct: 68 LHTTASTLDDDGNYTIMAANPQGRISCTGRLMVQAVNSGPSS 109
>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET,
muscle protein; NMR {Caenorhabditis elegans} SCOP:
b.1.1.4 PDB: 1wiu_A
Length = 93
Score = 37.7 bits (88), Expect = 6e-04
Identities = 11/92 (11%), Positives = 23/92 (25%), Gaps = 19/92 (20%)
Query: 282 QTVTWGQSVHLSCFVK-LPASMANQP-MSWYHYSK---DKGRYQIKFRSDKFIRTVDGGL 336
+ G + +L P P +W + +S +
Sbjct: 12 IKIKAGFTHNLEVDFIGAP-----DPTATWTVGDSGAALAPELLVDAKSSTTS------I 60
Query: 337 VIMAVEELDAGKYDCWLGN---TVLCTHNLTV 365
+ + D+G Y + N + V
Sbjct: 61 FFPSAKRADSGNYKLKVKNELGEDEAIFEVIV 92
>2fbo_J V1V2;, variable region-containing chitin-binding protein 3;
immunoglobulin, VCBP, V-type, V SET, immune system;
1.85A {Branchiostoma floridae}
Length = 250
Score = 39.9 bits (92), Expect = 7e-04
Identities = 21/105 (20%), Positives = 32/105 (30%), Gaps = 18/105 (17%)
Query: 282 QTVTWGQSVHLSCFV-----------KLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIR 330
V G + ++C P N Y +K ++ I + S +
Sbjct: 146 VQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAG 205
Query: 331 TV----DGGLVIMAVEELDAGKYDCWLGNTVLCTHNLTVDAHSNV 371
LVI A + DAG+ C L L D S +
Sbjct: 206 RASFSGARNLVIRAAKITDAGRVWCELATGQ---GELDADRSSTI 247
Score = 29.9 bits (66), Expect = 1.3
Identities = 14/96 (14%), Positives = 23/96 (23%), Gaps = 26/96 (27%)
Query: 282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDK-------------- 327
V G +V L C +L +SW + ++ +
Sbjct: 12 VEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSY 71
Query: 328 ------------FIRTVDGGLVIMAVEELDAGKYDC 351
L + V D G+Y C
Sbjct: 72 KESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWC 107
>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet,
STRU genomics, berkeley structural genomics center,
BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A
Length = 137
Score = 38.5 bits (89), Expect = 7e-04
Identities = 20/99 (20%), Positives = 26/99 (26%), Gaps = 20/99 (20%)
Query: 282 QTVTWGQSVHLSCFVK-LPASMANQPM-SWYH----------YSKDKGRYQIKFRSDKFI 329
Q G SV L C P P W+ D R +
Sbjct: 31 QQRWVGGSVELHCEAVGSP-----VPEIQWWFEGQGPNDICSQLWDGARLDRVHIHATYH 85
Query: 330 RTVDGGLVIMAVEELDAGKYDCWLGN---TVLCTHNLTV 365
+ + I + E D G Y+C N T V
Sbjct: 86 QHAASTISIDTLVEEDTGTYECRASNDPDRNHLTRAPRV 124
>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-
like; 2.50A {Homo sapiens}
Length = 312
Score = 40.0 bits (93), Expect = 7e-04
Identities = 21/94 (22%), Positives = 30/94 (31%), Gaps = 16/94 (17%)
Query: 280 LKQTVTWGQSVHLSCFV---KLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGL 336
L VT +V L C V K + WY K +I + L
Sbjct: 229 LSWEVTGECNVLLKCKVANIKKETHI-----VWY-----KDEREISVDEKHDFKDGICTL 278
Query: 337 VIMAVEELDAGKYDCWLGN---TVLCTHNLTVDA 367
+I + DAG Y+ L + L +A
Sbjct: 279 LITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEA 312
Score = 38.4 bits (89), Expect = 0.003
Identities = 14/79 (17%), Positives = 22/79 (27%), Gaps = 13/79 (16%)
Query: 282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGG---LVI 338
S++ C P S SW K + S + G +
Sbjct: 13 VDDDGVISLNFECDKMTPKS----EFSWS-----KDYVSTE-DSPRLEVESKGNKTKMTF 62
Query: 339 MAVEELDAGKYDCWLGNTV 357
+ D G Y C + +T
Sbjct: 63 KDLGMDDLGIYSCDVTDTD 81
Score = 33.8 bits (77), Expect = 0.073
Identities = 14/103 (13%), Positives = 31/103 (30%), Gaps = 12/103 (11%)
Query: 280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSK---DKGRYQIKFRSDKFIRTVDGGL 336
L + V + N +++ K + +Y++ + I +
Sbjct: 115 LAVEILEKGQVRFWM--QAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIE----M 168
Query: 337 VIMAVEELDAGKYDCWLGN---TVLCTHNLTVDAHSNVADAPT 376
+ +++ D G Y L + T T L D +
Sbjct: 169 FMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAE 211
>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo
sapiens}
Length = 99
Score = 37.7 bits (88), Expect = 8e-04
Identities = 20/94 (21%), Positives = 32/94 (34%), Gaps = 19/94 (20%)
Query: 282 QTVTWGQSVHLSCFVK-LPASMANQP-MSWYHYSK---DKGRYQIKFRSDKFIRTVDGGL 336
TV+ + P +P W K G+Y++ F L
Sbjct: 16 TTVSSDSVAKFAVKATGEP-----RPTAIWTKDGKAITQGGKYKLSEDKGGFF------L 64
Query: 337 VIMAVEELDAGKYDCWLGN---TVLCTHNLTVDA 367
I + D+G Y C + N +V + LT+ A
Sbjct: 65 EIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTIKA 98
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG
B3P; 2.60A {Homo sapiens}
Length = 304
Score = 39.8 bits (93), Expect = 0.001
Identities = 20/99 (20%), Positives = 37/99 (37%), Gaps = 10/99 (10%)
Query: 282 QTVTWGQSVHLSCFVK-LPASMANQPM-SWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIM 339
+ V ++ + C P P +W+ KD + + + G L I
Sbjct: 118 KVVERTRTATMLCAASGNP-----DPEITWF---KDFLPVDPSASNGRIKQLRSGALQIE 169
Query: 340 AVEELDAGKYDCWLGNTVLCTHNLTVDAHSNVADAPTRL 378
+ EE D GKY+C N+ ++ + + V + R
Sbjct: 170 SSEETDQGKYECVATNSAGVRYSSPANLYVRVQNVAPRF 208
Score = 34.0 bits (78), Expect = 0.068
Identities = 13/90 (14%), Positives = 28/90 (31%), Gaps = 21/90 (23%)
Query: 282 QTVTWGQSVHLSCFVK---LPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVI 338
+ G +V+++C +P + W +G + G V+
Sbjct: 215 HEIMPGGNVNITCVAVGSPMPY------VKWM-----QGAEDLTPED----DMPVGRNVL 259
Query: 339 MAVEELDAGKYDCWLGN---TVLCTHNLTV 365
+ D+ Y C + + +TV
Sbjct: 260 ELTDVKDSANYTCVAMSSLGVIEAVAQITV 289
Score = 32.5 bits (74), Expect = 0.19
Identities = 18/101 (17%), Positives = 30/101 (29%), Gaps = 15/101 (14%)
Query: 282 QTVTWGQSVHLSCFVK-LPASMANQP-MSWYHYSKDKGRYQIK-FRSDKFIRTVDGGLVI 338
Q G C P +P ++W K + + F + +F + L I
Sbjct: 16 QIGVSGGVASFVCQATGDP-----KPRVTWN---KKGKKVNSQRFETIEFDESAGAVLRI 67
Query: 339 MAVEEL-DAGKYDCWLGN---TVLCTHNLTVDAHSNVADAP 375
+ D Y+C N + LTV +
Sbjct: 68 QPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGF 108
>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2,
angiogenesis, ATP-binding, developmental protein,
differentiation, glycoprotein; 2.70A {Homo sapiens}
Length = 108
Score = 37.3 bits (87), Expect = 0.001
Identities = 20/94 (21%), Positives = 31/94 (32%), Gaps = 21/94 (22%)
Query: 282 QTVTWGQSVHLSCFVK---LPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGG--L 336
QT + G+S+ +SC P + W+ K + D I DG L
Sbjct: 20 QTTSIGESIEVSCTASGNPPPQ------IMWF-----KDNETLV--EDSGIVLKDGNRNL 66
Query: 337 VIMAVEELDAGKYDCWLGN---TVLCTHNLTVDA 367
I V + D G Y C + ++
Sbjct: 67 TIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEG 100
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, hematopoietic cytokine-receptor
complex, cell surface, EXTR complex; 7.80A {Homo
sapiens}
Length = 527
Score = 39.3 bits (91), Expect = 0.002
Identities = 13/90 (14%), Positives = 30/90 (33%), Gaps = 9/90 (10%)
Query: 281 KQTVTWGQSVHLSCFVKLPASMANQP--MSWYHYSK---DKGRYQIKFRSDKFIRTVDGG 335
+ + G+ + + C A N ++W +K + +++ S
Sbjct: 236 QLFLKVGEPLWIRC----KAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILF 291
Query: 336 LVIMAVEELDAGKYDCWLGNTVLCTHNLTV 365
+ +V D G Y C + +T+
Sbjct: 292 AFVSSVARNDTGYYTCSSSKHPSQSALVTI 321
Score = 36.2 bits (83), Expect = 0.015
Identities = 15/96 (15%), Positives = 30/96 (31%), Gaps = 10/96 (10%)
Query: 281 KQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMA 340
V S+ L V P +++ W K +VI+
Sbjct: 57 AVEVDVSASITLQVLVDAPGNIS---CLWVF----KHSSLNCQPHFDLQNRGVVSMVILK 109
Query: 341 VEELDAGKYDCWLGNTVLCTHNLTVDAHSNVADAPT 376
+ E AG+Y ++ + N T+ ++ +
Sbjct: 110 MTETQAGEYLLFIQSEA---TNYTILFTVSIRNTLL 142
Score = 33.1 bits (75), Expect = 0.14
Identities = 10/89 (11%), Positives = 19/89 (21%), Gaps = 17/89 (19%)
Query: 282 QTVTWGQSVHLSCFVKLPASMANQP--MSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIM 339
+ + S K A +W K F ++ +
Sbjct: 336 YEIDQYEEFCFSVRFK-----AYPQIRCTWTFSRKS-------FPCEQKGLDNGYSISKF 383
Query: 340 AVEELDAGKYDCWLGN---TVLCTHNLTV 365
+ G+Y N L +
Sbjct: 384 CNHKHQPGEYIFHAENDDAQFTKMFTLNI 412
>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein;
2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A
Length = 154
Score = 37.5 bits (87), Expect = 0.002
Identities = 23/107 (21%), Positives = 32/107 (29%), Gaps = 24/107 (22%)
Query: 282 QTVTWGQSVHLSCFVK-LPASMANQP-MSWYHYSKDK------GRYQIKFRSDKFIRTVD 333
V G + C V+ P P + W+ KD +QI + +
Sbjct: 51 MEVVEGSAARFDCKVEGYP-----DPEVMWF---KDDNPVKESRHFQIDYDEEGNCS--- 99
Query: 334 GGLVIMAVEELDAGKYDCWLGN---TVLCTHNLTVDAHSNVADAPTR 377
L I V D KY C N CT L V+ +
Sbjct: 100 --LTISEVCGDDDAKYTCKAVNSLGEATCTAELLVETMGKEGEGEGE 144
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain,
immunoglobulin superfamily, transmembrane,
phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A
{Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Length = 389
Score = 39.0 bits (91), Expect = 0.002
Identities = 18/92 (19%), Positives = 30/92 (32%), Gaps = 12/92 (13%)
Query: 282 QTVTWGQSVHLSCFVKLPASMANQP-MSWYHYSKDK----GRYQIKFRSDKFIRTVDGGL 336
+T V L C A P ++W G + R + + L
Sbjct: 10 ETTYENGQVTLVC----DAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSL 65
Query: 337 VIMAVEELDAGKYDCWLGN---TVLCTHNLTV 365
I V+ D+G+YDC + + L +
Sbjct: 66 HIKDVKLSDSGRYDCEAASRIGGHQKSMYLDI 97
Score = 36.3 bits (84), Expect = 0.013
Identities = 17/82 (20%), Positives = 33/82 (40%), Gaps = 16/82 (19%)
Query: 282 QTVTWGQSVHLSCFVKLPASMANQP--MSWYHYSKDKGRYQIKFRSDKFIRTVDGG---- 335
G +++SC VK +N P + W + + + ++ ++T G
Sbjct: 110 YYSWEGNPINISCDVK-----SNPPASIHWR-----RDKLVLPAKNTTNLKTYSTGRKMI 159
Query: 336 LVIMAVEELDAGKYDCWLGNTV 357
L I + D G+Y+C N +
Sbjct: 160 LEIAPTSDNDFGRYNCTATNHI 181
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, CY receptor complex, extracellular
complex; HET: NAG; 4.30A {Homo sapiens}
Length = 423
Score = 39.3 bits (91), Expect = 0.002
Identities = 13/89 (14%), Positives = 28/89 (31%), Gaps = 9/89 (10%)
Query: 282 QTVTWGQSVHLSCFVKLPASMANQPM--SWYHYSK---DKGRYQIKFRSDKFIRTVDGGL 336
+ G+ + + C A N +W +K + +++ S
Sbjct: 237 LFLKVGEPLWIRC----KAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFA 292
Query: 337 VIMAVEELDAGKYDCWLGNTVLCTHNLTV 365
+ +V D G Y C + +T+
Sbjct: 293 FVSSVARNDTGYYTCSSSKHPSQSALVTI 321
Score = 36.6 bits (84), Expect = 0.012
Identities = 14/98 (14%), Positives = 26/98 (26%), Gaps = 14/98 (14%)
Query: 281 KQTVTWGQSVHLSCFVK-LPASMANQP-MSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVI 338
V S+ L V W K +VI
Sbjct: 57 AVEVDVSASITLQVLVDAPG-----NISCLWVF----KHSSLNCQPHFDLQNRGVVSMVI 107
Query: 339 MAVEELDAGKYDCWLGNTVLCTHNLTVDAHSNVADAPT 376
+ + E AG+Y ++ + N T+ ++ +
Sbjct: 108 LKMTETQAGEYLLFIQSEAT---NYTILFTVSIRNTLL 142
Score = 27.3 bits (60), Expect = 9.5
Identities = 10/90 (11%), Positives = 20/90 (22%), Gaps = 17/90 (18%)
Query: 281 KQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGG--LVI 338
+ + S K A + + R + +D G +
Sbjct: 335 DYEIDQYEEFCFSVRFK-----AYPQIRC---TWTFSRKSFPCE----QKGLDNGYSISK 382
Query: 339 MAVEELDAGKYDCWLGN---TVLCTHNLTV 365
+ G+Y N L +
Sbjct: 383 FCNHKHQPGEYIFHAENDDAQFTKMFTLNI 412
>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor,
CD32, immunoglobulin superfamily, low responder
polymorphism, cell membrane; HET: NAG; 1.50A {Homo
sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C*
2fcb_A
Length = 170
Score = 37.9 bits (88), Expect = 0.002
Identities = 21/96 (21%), Positives = 29/96 (30%), Gaps = 16/96 (16%)
Query: 282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAV 341
V SV L+C S + + W+ + I T
Sbjct: 14 INVLQEDSVTLTCQG--ARSPESDSIQWF-------------HNGNLIPTHTQPSYRFKA 58
Query: 342 EELDAGKYDCWLGNTVL-CTHNLTVDAHSNVADAPT 376
D+G+Y C G T L +LTV V P
Sbjct: 59 NNNDSGEYTCQTGQTSLSDPVHLTVLFEWLVLQTPH 94
Score = 34.0 bits (78), Expect = 0.032
Identities = 11/69 (15%), Positives = 21/69 (30%), Gaps = 13/69 (18%)
Query: 283 TVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVE 342
G+++ L C ++P+ + ++ KF D I
Sbjct: 96 EFQEGETIMLRCHSW-----KDKPLVKVTFFQNGK--SQKFSHL------DPTFSIPQAN 142
Query: 343 ELDAGKYDC 351
+G Y C
Sbjct: 143 HSHSGDYHC 151
>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF
receptor, cancer, immune system-transfer complex; HET:
NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X
Length = 122
Score = 37.0 bits (85), Expect = 0.002
Identities = 14/81 (17%), Positives = 29/81 (35%), Gaps = 8/81 (9%)
Query: 283 TVTWGQSVHLSCFVK-LPASMANQPMSWYHYSKDKGR-----YQIKFRSDKFIRTVDGGL 336
++ G+ + L+C + + +W + S +K +S ++ L
Sbjct: 19 ELSVGEKLVLNCTARTELNVGID--FNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTL 76
Query: 337 VIMAVEELDAGKYDCWLGNTV 357
I V D G Y C + +
Sbjct: 77 TIDGVTRSDQGLYTCAASSGL 97
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling
protein complex, angiogenesis, glycoprotein, HOST-virus
interaction, membrane; HET: NAG BMA; 2.70A {Homo
sapiens} PDB: 2x1x_R*
Length = 213
Score = 38.2 bits (88), Expect = 0.002
Identities = 16/92 (17%), Positives = 32/92 (34%), Gaps = 11/92 (11%)
Query: 283 TVTWGQSVHLSCFVK-LPASMANQPMSWYHYSKDKGR-----YQIKFRSDKFIRTVDGGL 336
++ G+ + L+C + + +W + S +K +S ++ L
Sbjct: 116 ELSVGEKLVLNCTARTELNVGID--FNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTL 173
Query: 337 VIMAVEELDAGKYDCWLGN---TVLCTHNLTV 365
I V D G Y C + T + + V
Sbjct: 174 TIDGVTRSDQGLYTCAASSGLMTKKNSTFVRV 205
Score = 28.6 bits (63), Expect = 2.7
Identities = 10/69 (14%), Positives = 19/69 (27%), Gaps = 7/69 (10%)
Query: 283 TVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVE 342
T ++V + C + N +S + ++ G I +
Sbjct: 20 TENKNKTVVIPCLGSIS----NLNVSLC---ARYPEKRFVPDGNRISWDSKKGFTIPSYM 72
Query: 343 ELDAGKYDC 351
AG C
Sbjct: 73 ISYAGMVFC 81
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI
cardiomyopathy, disease mutation, disulfide bond,
immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Length = 197
Score = 38.1 bits (89), Expect = 0.002
Identities = 20/94 (21%), Positives = 32/94 (34%), Gaps = 20/94 (21%)
Query: 281 KQTVTWGQSVHLSCFVK-LPASMANQPM-SWYHYSK---DKGRYQIKFRSDKFIRTVDGG 335
K G ++ L P P +W+H K + I+
Sbjct: 112 KYYGAVGSTLRLHVMYIGRP-----VPAMTWFHGQKLLQNSENITIENTEHYTH------ 160
Query: 336 LVIMAVE-ELDAGKYDCWLGN---TVLCTHNLTV 365
LV+ V+ + AGKY L N TV ++ +
Sbjct: 161 LVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVEI 194
Score = 36.2 bits (84), Expect = 0.009
Identities = 22/94 (23%), Positives = 34/94 (36%), Gaps = 19/94 (20%)
Query: 282 QTVTWGQSVHLSCFVK-LPASMANQP-MSWYHYSK---DKGRYQIKFRSDKFIRTVDGGL 336
T G++ LSC + P P + WY + K +Y++ L
Sbjct: 17 VTTKLGEAAQLSCQIVGRP-----LPDIKWYRFGKELIQSRKYKMSSDGR------THTL 65
Query: 337 VIMAVEELDAGKYDCWLGN---TVLCTHNLTVDA 367
+M E+ D G Y C N V + L + A
Sbjct: 66 TVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQA 99
>3irg_B Obscurin-like protein 1; IG-like, titin, OBSL1, complex,
alternative splicing, ATP-binding, calcium,
calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens}
PDB: 3knb_B 2wp3_O* 2wwm_C 2wwk_O
Length = 107
Score = 36.6 bits (85), Expect = 0.002
Identities = 24/94 (25%), Positives = 31/94 (32%), Gaps = 19/94 (20%)
Query: 282 QTVTWGQSVHLSCFVK-LPASMANQP-MSWYHYSKDKGRYQIKFRSDKFIRTVDGG---L 336
V G L C V P P + W KG Q+ S++ DG L
Sbjct: 23 VRVVSGAEAELKCVVLGEP-----PPVVVWE-----KGGQQLA-ASERLSFPADGAEHGL 71
Query: 337 VIMAVEELDAGKYDCWLGN---TVLCTHNLTVDA 367
++ A DAG Y C N +TV
Sbjct: 72 LLTAALPTDAGVYVCRARNAAGEAYAAAAVTVLE 105
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM;
2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
PDB: 1ie5_A
Length = 291
Score = 38.7 bits (90), Expect = 0.002
Identities = 18/93 (19%), Positives = 32/93 (34%), Gaps = 16/93 (17%)
Query: 282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSK-----DKGRYQIKFRSDKFIRTVDGGL 336
++ G+S C V ++ +SW+ + ++ R + + D L
Sbjct: 12 GEISVGESKFFLCQV--AGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDD-----SSTL 64
Query: 337 VIMAVEELDAGKYDCW----LGNTVLCTHNLTV 365
I DAG Y C G T N+ +
Sbjct: 65 TIYNANIDDAGIYKCVVTAEDGTQSEATVNVKI 97
Score = 37.5 bits (87), Expect = 0.005
Identities = 22/94 (23%), Positives = 28/94 (29%), Gaps = 21/94 (22%)
Query: 282 QTVTWGQSVHLSCFVK---LPASMANQPMSWYHYSKDKGRYQI----KFRSDKFIRTVDG 334
T GQSV L C P MSW K I +
Sbjct: 206 ATANLGQSVTLVCDADGFPEPT------MSWT-----KDGEPIENEEEDDEKHIFSDDSS 254
Query: 335 GLVIMAVEELDAGKYDCWLGN---TVLCTHNLTV 365
L I V++ D +Y C N + +L V
Sbjct: 255 ELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKV 288
Score = 36.8 bits (85), Expect = 0.008
Identities = 19/72 (26%), Positives = 27/72 (37%), Gaps = 11/72 (15%)
Query: 282 QTVTWGQSVHLSCFVK-LPASMANQPM-SWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIM 339
Q G+ + C V P W H KGR I + +FI + L I
Sbjct: 110 QEFKEGEDAVIVCDVVSSL-----PPTIIWKH----KGRDVILKKDVRFIVLSNNYLQIR 160
Query: 340 AVEELDAGKYDC 351
+++ D G Y C
Sbjct: 161 GIKKTDEGTYRC 172
>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain,
beta-sandwhich, I-SET, structural protein; 2.10A {Homo
sapiens} SCOP: b.1.1.4
Length = 99
Score = 36.1 bits (84), Expect = 0.002
Identities = 21/94 (22%), Positives = 26/94 (27%), Gaps = 18/94 (19%)
Query: 282 QTVTWGQSVHLSCFVK-LPASMANQP-MSWYHYSKDKGRYQIKFRSDKFIRTVDGG---L 336
QTV G H V P P WY K +I+ + + L
Sbjct: 15 QTVGQGSDAHFRVRVVGKP-----DPECEWY-----KNGVKIERSDRIYWYWPEDNVCEL 64
Query: 337 VIMAVEELDAGKYDCWLGN---TVLCTHNLTVDA 367
VI V D+ N L V A
Sbjct: 65 VIRDVTGEDSASIMVKAINIAGETSSHAFLLVQA 98
>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell
adhesion molecule, immunoglobuline superfamily,
alternative splicing, cell adhesion; 2.19A {Mus
musculus} PDB: 3mj7_B* 2npl_X
Length = 214
Score = 38.1 bits (88), Expect = 0.002
Identities = 13/90 (14%), Positives = 20/90 (22%), Gaps = 16/90 (17%)
Query: 282 QTVTWGQSVHLSCFVKLPASMANQPMSWY---HYSKDKGRYQIKFRSDKFIRTVDGGLVI 338
+ G L C K + K + + +
Sbjct: 131 GSEEIGNDFKLKCEPK----------EGSLPLQFEWQKLSDSQTMPTPWLAEMTSPVISV 180
Query: 339 MAVEELDAGKYDCWLGNTVL---CTHNLTV 365
+G Y C + N V C L V
Sbjct: 181 KNASSEYSGTYSCTVQNRVGSDQCMLRLDV 210
Score = 34.7 bits (79), Expect = 0.026
Identities = 15/108 (13%), Positives = 26/108 (24%), Gaps = 25/108 (23%)
Query: 283 TVTWGQSVHLSCFVKLPASMANQP-MSWY------------HYSKDKGRYQIKFRSDKFI 329
G++ +L C L + W + + D
Sbjct: 11 EKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKG 70
Query: 330 RTV---------DGGLVIMAVEELDAGKYDCWLGN---TVLCTHNLTV 365
R D + + ++ D G Y C + LTV
Sbjct: 71 RVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTV 118
>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core
protein; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4
Length = 98
Score = 35.9 bits (83), Expect = 0.002
Identities = 21/87 (24%), Positives = 28/87 (32%), Gaps = 13/87 (14%)
Query: 282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAV 341
Q+V G V C K + P +++ D +G L I V
Sbjct: 20 QSVRPGADVTFICTAK-----SKSPAYTLVWTRLHNGKLPSRAMDF-----NGILTIRNV 69
Query: 342 EELDAGKYDCWLGN---TVLCTHNLTV 365
+ DAG Y C N T L V
Sbjct: 70 QPSDAGTYVCTGSNMFAMDQGTATLHV 96
>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation
marker blast-1, BCM1 surface antigen, leukocyte antigen
MEM-102, TCT.1; NMR {Homo sapiens}
Length = 121
Score = 36.8 bits (85), Expect = 0.002
Identities = 22/96 (22%), Positives = 35/96 (36%), Gaps = 15/96 (15%)
Query: 283 TVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDK----GRYQIKFRSDKF-----IRTVD 333
TV G +V L+ LP + ++W++ K + K+ KF +
Sbjct: 15 TVVSGSNVTLNISESLPENYKQ--LTWFYTFDQKIVEWDSRKSKYFESKFKGRVRLDPQS 72
Query: 334 GGLVIMAVEELDAGKYDCWL----GNTVLCTHNLTV 365
G L I V++ D Y + GN L V
Sbjct: 73 GALYISKVQKEDNSTYIMRVLKKTGNEQEWKIKLQV 108
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 38.6 bits (90), Expect = 0.002
Identities = 18/96 (18%), Positives = 28/96 (29%), Gaps = 12/96 (12%)
Query: 260 RLLQDVSNTSDSICES---SVGRLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDK 316
R + ++ + C + VT G + L C A+ ++ +
Sbjct: 327 RYIGELD-QNYFTCYAPVIVEPPADLNVTEGMAAELKC-------RASTSLTSVSWITPN 378
Query: 317 GRYQIKFRSDKFIRT-VDGGLVIMAVEELDAGKYDC 351
G I DG L V D G Y C
Sbjct: 379 GTVMTHGAYKVRIAVLSDGTLNFTNVTVQDTGMYTC 414
>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit;
immunoglobulin fold, glycoprotein, IGE-binding Pro
immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP:
b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A*
1j88_A* 1j89_A* 1j87_A*
Length = 176
Score = 37.6 bits (87), Expect = 0.003
Identities = 11/75 (14%), Positives = 22/75 (29%), Gaps = 15/75 (20%)
Query: 282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAV 341
+ G++V L+C W+ + + L I+
Sbjct: 14 NRIFKGENVTLTC--NGNNFFEVSSTKWF-------------HNGSLSEETNSSLNIVNA 58
Query: 342 EELDAGKYDCWLGNT 356
+ D+G+Y C
Sbjct: 59 KFEDSGEYKCQHQQV 73
Score = 33.7 bits (77), Expect = 0.053
Identities = 19/89 (21%), Positives = 30/89 (33%), Gaps = 17/89 (19%)
Query: 281 KQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMA 340
+ V GQ + L C N + Y KD +K+ + + + I
Sbjct: 94 AEVVMEGQPLFLRCHGW-----RNWDVYKVIYYKDGE--ALKYWYE------NHNISITN 140
Query: 341 VEELDAGKYDC----WLGNTVLCTHNLTV 365
D+G Y C W + N+TV
Sbjct: 141 ATVEDSGTYYCTGKVWQLDYESEPLNITV 169
>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3;
structural genomics, joint center for struct genomics,
JCSG; HET: MLY MSE; 1.70A {Mus musculus}
Length = 112
Score = 36.6 bits (84), Expect = 0.003
Identities = 16/97 (16%), Positives = 34/97 (35%), Gaps = 16/97 (16%)
Query: 282 QTVTWGQSVHLSCFVKLPASMANQPMSWY--------HYSKDKGRYQIKFRSDKFIRTVD 333
Q+ G V +C S ++ PM++ ++ + ++ +
Sbjct: 20 QSAIXGSDVSFTCSAA---SSSDSPMTFAWXXDNEALQDAEMENYAHLR-AQGGELMEYT 75
Query: 334 GGLVIMAVEELDAGKYDCWLGNTVLCTH----NLTVD 366
L + VE G Y C + N ++ LT++
Sbjct: 76 TILRLRNVEFTSEGXYQCVISNHFGSSYSVXAXLTIN 112
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker,
immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Length = 642
Score = 38.8 bits (90), Expect = 0.003
Identities = 22/131 (16%), Positives = 42/131 (32%), Gaps = 17/131 (12%)
Query: 247 AATTTLRTVFVKVRLLQDVSNTSDSICESSVGRLKQTVTWGQSVHLSCFVKLPASMANQP 306
+A+ RT + + ++ S S S + V +V +C N
Sbjct: 448 SASGHSRTTVKTITVSAELPKPSISSNNS------KPVEDKDAVAFTC----EPEAQNTT 497
Query: 307 MSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGNTVLCTHNLTVD 366
W+ + + + + L + V DA Y C + N+V + N +
Sbjct: 498 YLWWVNGQ-----SLPVSPRLQLSNGNRTLTLFNVTRNDARAYVCGIQNSV--SANRSDP 550
Query: 367 AHSNVADAPTR 377
+V P
Sbjct: 551 VTLDVLYGPDT 561
Score = 38.4 bits (89), Expect = 0.003
Identities = 41/297 (13%), Positives = 86/297 (28%), Gaps = 53/297 (17%)
Query: 93 KARLNCSIPGEFPFYFNEIQDIYKVPGDDTKFYGVFTTSTTGLMGSAICSFSIEDIERAF 152
C + Y + + +P + ++ + ++ ++ R
Sbjct: 128 AVAFTCEPETQDATYLWWVNNQ-SLPVSP----RLQLSNGNR-------TLTLFNVTRND 175
Query: 153 VGKFK-------EQATSTSAWLPVLSSRVPEPRPGQCVNDTETLPDSVLNF---IRSHPL 202
+K S S L VL P +T LN S+P
Sbjct: 176 TASYKCETQNPVSARRSDSVILNVL---YGPDAPTISPLNTSYRSGENLNLSCHAASNPP 232
Query: 203 MDEAVA-HRDNKPVFYRRDLLFTHLVV-DVVQYEVFGTTSEYIVYFAATTTLRTVFVKVR 260
+ + ++L ++ V + Y + + T RT +
Sbjct: 233 AQ--YSWFVNGTFQQSTQELFIPNITVNNSGSYTC-------QAHNSDTGLNRTTVTTIT 283
Query: 261 LLQDVSNTSDSICESSVGRLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQ 320
+ + + S V +V L+C ++ N W+ ++
Sbjct: 284 VYAEPPKPFITSNNS------NPVEDEDAVALTCEPEIQ----NTTYLWWVNNQ-----S 328
Query: 321 IKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGNTVLCTHNLTVDAHSNVADAPTR 377
+ + + L +++V D G Y+C + N + H+ V NV P
Sbjct: 329 LPVSPRLQLSNDNRTLTLLSVTRNDVGPYECGIQNELSVDHSDPV--ILNVLYGPDD 383
Score = 38.0 bits (88), Expect = 0.004
Identities = 14/96 (14%), Positives = 27/96 (28%), Gaps = 11/96 (11%)
Query: 282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAV 341
+ V +V +C + + W+ + + + + L + V
Sbjct: 121 KPVEDKDAVAFTCEPETQ----DATYLWWV----NNQ-SLPVSPRLQLSNGNRTLTLFNV 171
Query: 342 EELDAGKYDCWLGNTVLCTHNLTVDAHSNVADAPTR 377
D Y C N V + + NV P
Sbjct: 172 TRNDTASYKCETQNPV--SARRSDSVILNVLYGPDA 205
Score = 36.5 bits (84), Expect = 0.014
Identities = 16/105 (15%), Positives = 28/105 (26%), Gaps = 12/105 (11%)
Query: 282 QTVTWGQSVHLSCFV-----------KLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIR 330
V G+ V L K N+ + Y + + S + I
Sbjct: 9 FNVAEGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAY-SGREII 67
Query: 331 TVDGGLVIMAVEELDAGKYDCWLGNTVLCTHNLTVDAHSNVADAP 375
+ L+I + + D G Y + + L T
Sbjct: 68 YPNASLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPELPK 112
Score = 31.1 bits (70), Expect = 0.60
Identities = 20/89 (22%), Positives = 27/89 (30%), Gaps = 24/89 (26%)
Query: 282 QTVTWGQSVHLSCFVKLPASMANQP--MSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIM 339
G ++ LSC +N P SW D G Q L I
Sbjct: 391 TYYRPGVNLSLSCHAA-----SNPPAQYSWL---ID-GNIQQH----------TQELFIS 431
Query: 340 AVEELDAGKYDCWLGN---TVLCTHNLTV 365
+ E ++G Y C N T T+
Sbjct: 432 NITEKNSGLYTCQANNSASGHSRTTVKTI 460
Score = 30.3 bits (68), Expect = 1.3
Identities = 12/76 (15%), Positives = 24/76 (31%), Gaps = 17/76 (22%)
Query: 282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAV 341
+ G +++LSC +N Y + + + L I +
Sbjct: 569 SSYLSGANLNLSCHSA-----SNPSPQ-YSWRIN----------GIPQQH-TQVLFIAKI 611
Query: 342 EELDAGKYDCWLGNTV 357
+ G Y C++ N
Sbjct: 612 TPNNNGTYACFVSNLA 627
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor
tyrosine kinase, growth factor cytoki dimerization,
transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Length = 524
Score = 38.5 bits (89), Expect = 0.003
Identities = 13/92 (14%), Positives = 26/92 (28%), Gaps = 11/92 (11%)
Query: 281 KQTVTWGQSVHLSCFVKLPASMANQP--MSWYHYSKD--KGRYQIKFRSDKFIRTVDGGL 336
+ G+ ++C + +W + + F L
Sbjct: 220 SYLLREGEEFTVTC----TIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATL 275
Query: 337 VIMAVEELDAGKYDCWLGN---TVLCTHNLTV 365
I + D+G + C+ N + T L V
Sbjct: 276 TISSARVNDSGVFMCYANNTFGSANVTTTLEV 307
Score = 37.3 bits (86), Expect = 0.006
Identities = 13/101 (12%), Positives = 30/101 (29%), Gaps = 7/101 (6%)
Query: 272 ICESSVGRLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSK--DKGRYQIKFRSDKFI 329
I + V G++V L + A + W + ++ ++
Sbjct: 313 INIFPMINTTVFVNDGENVDLIVEYE--AFPKPEHQQWIYMNRTFTDKWEDYPKSENESN 370
Query: 330 RTVDGGLVIMAVEELDAGKYDCWLGN---TVLCTHNLTVDA 367
L + ++ + G Y + N N+ V+
Sbjct: 371 IRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVNT 411
Score = 33.1 bits (75), Expect = 0.13
Identities = 14/95 (14%), Positives = 22/95 (23%), Gaps = 24/95 (25%)
Query: 282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAV 341
V G + L C + W D+ +
Sbjct: 46 LIVRVGDEIRLLC-------TDPGFVKWTFEILDETNEN-----------KQNEWITEKA 87
Query: 342 EELDAGKYDCWLGNTVLCTHNLTVDAHSNVADAPT 376
E + GKY C + L+ + V D
Sbjct: 88 EATNTGKYTCTNKHG------LSNSIYVFVRDPAK 116
Score = 29.6 bits (66), Expect = 1.6
Identities = 11/98 (11%), Positives = 26/98 (26%), Gaps = 11/98 (11%)
Query: 282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAV 341
+ C + P ++ Y +G+ + +FI G++I +V
Sbjct: 124 LYGKEDNDTLVRCPLTDP------EVTNYSLKGCQGK--PLPKDLRFIPDPKAGIMIKSV 175
Query: 342 E-ELDAGKYDCW--LGNTVLCTHNLTVDAHSNVADAPT 376
+ C + + + P
Sbjct: 176 KRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAVPV 213
>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage
capsid decorative protein, interaction with bacteria;
1.95A {Enterobacteria phage RB49}
Length = 304
Score = 38.3 bits (88), Expect = 0.003
Identities = 16/98 (16%), Positives = 23/98 (23%), Gaps = 12/98 (12%)
Query: 282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAV 341
V+ V L VK HYS KG I D + I
Sbjct: 102 FYVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVIDTTQD---------ITIQEF 152
Query: 342 EELDAGKYDCWLGNTVLCTH---NLTVDAHSNVADAPT 376
G Y + + + + + D
Sbjct: 153 TADKNGVYTVKVWGESEDSAASASTKIMLATMNVDQDV 190
Score = 32.9 bits (74), Expect = 0.14
Identities = 17/82 (20%), Positives = 29/82 (35%), Gaps = 12/82 (14%)
Query: 282 QTVTWGQSVHLSCFVKL-----PASMANQPMSWYHYSKDKGRYQIKFRSDK-------FI 329
+TV G + L+ V + M N + + Y + +G+ + F
Sbjct: 194 KTVALGNEISLNYVVSEDIVGDSSGMPNLTIKYNWYLQREGQLSPTLIGSEVGEALEGFS 253
Query: 330 RTVDGGLVIMAVEELDAGKYDC 351
T DG L + D K+ C
Sbjct: 254 ITPDGHLFKESATYDDTAKFWC 275
Score = 31.3 bits (70), Expect = 0.50
Identities = 15/80 (18%), Positives = 25/80 (31%), Gaps = 14/80 (17%)
Query: 282 QTVTWGQSVHLSCFVKLPASMANQPMSW-YHYSKDKGRYQIKFRSDKFIRTVDGGLVIMA 340
+ G L+ V A P + Y ++KD D+ L +
Sbjct: 12 RCFLAGDGFTLTATV---AGDEPLPSNLTYTWTKD----------DQPHENNTATLTVAD 58
Query: 341 VEELDAGKYDCWLGNTVLCT 360
+AG Y + +T T
Sbjct: 59 ATSENAGSYKVTVQDTDTMT 78
>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin,
actin-associated scaffold, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 110
Score = 35.8 bits (83), Expect = 0.003
Identities = 25/94 (26%), Positives = 35/94 (37%), Gaps = 18/94 (19%)
Query: 282 QTVTWGQSVHLSCFVK-LPASMANQP-MSWYHYSKDKGRYQIKFRSDKFIRTVDGG---L 336
TV G+ + C V LP P +SW G+ ++ S + + G L
Sbjct: 19 LTVQEGKLCRMDCKVSGLP-----TPDLSWQL----DGK-PVRPDSAHKMLVRENGVHSL 68
Query: 337 VIMAVEELDAGKYDCWLGN---TVLCTHNLTVDA 367
+I V DAG Y C N + L V A
Sbjct: 69 IIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAA 102
>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C,
C-protein, skeletal muscle fast-isoform, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 36.2 bits (84), Expect = 0.003
Identities = 16/103 (15%), Positives = 32/103 (31%), Gaps = 20/103 (19%)
Query: 279 RLKQTVTW--GQSVHLSCFVK-LPASMANQP-MSWYHYSK--DKGRYQIKFRSDKFIRTV 332
L+QT G+ ++L + P +P + W D R ++
Sbjct: 29 HLRQTYIRKVGEQLNLVVPFQGKP-----RPQVVWTKGGAPLDTSRVHVRTSDF------ 77
Query: 333 DGGLVIMAVEELDAGKYDCWLGNTVLCTHNLTVDAHSNVADAP 375
D + D+G+Y+ + + T V +
Sbjct: 78 DTVFFVRQAARSDSGEYELSVQIENMKD---TATIRIRVVEKA 117
>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 99
Score = 35.4 bits (82), Expect = 0.004
Identities = 21/89 (23%), Positives = 27/89 (30%), Gaps = 16/89 (17%)
Query: 282 QTVTWGQSVHLSCFVK-LPASMANQPM-SWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIM 339
V GQ L C V+ P P +W I+ + L I
Sbjct: 21 CAVIEGQDFVLQCSVRGTP-----VPRITWL-----LNGQPIQ-YARSTCEAGVAELHIQ 69
Query: 340 AVEELDAGKYDCWLGN---TVLCTHNLTV 365
D G Y C N V C+ +TV
Sbjct: 70 DALPEDHGTYTCLAENALGQVSCSAWVTV 98
>3eow_R Poliovirus receptor; immunoglobulin super family, alternative
splicing, cell adhesion, cell membrane, glycoprotein,
HOST-virus interaction; 3.50A {Homo sapiens} PDB: 3uro_R
3epc_R* 3epd_R* 3epf_R*
Length = 221
Score = 37.4 bits (86), Expect = 0.004
Identities = 15/87 (17%), Positives = 28/87 (32%), Gaps = 17/87 (19%)
Query: 282 QTVTWGQSVHLSCFVKLPASMANQPMS--WYH---------YSKDKGRYQIKFRSDKFIR 330
G SV L C++++P W + + +G + + +F+
Sbjct: 9 VPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVA 68
Query: 331 TV------DGGLVIMAVEELDAGKYDC 351
D L + + D G Y C
Sbjct: 69 ARLGAELRDASLRMFGLRVEDEGSYTC 95
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular
adhesion, ligand-independent DIME mutational analysis,
transferase; HET: EPE; 1.96A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.4
Length = 182
Score = 37.1 bits (86), Expect = 0.004
Identities = 25/95 (26%), Positives = 39/95 (41%), Gaps = 20/95 (21%)
Query: 281 KQTVTWGQSVHLSCFVK-LPASMANQP-MSWYHYSKDKGRYQIKFRSDKFIRTVD----G 334
K TV+ GQ V L+C V+ + +P + W K ++ +I + G
Sbjct: 11 KLTVSQGQPVKLNCSVEGME-----EPDIQWV-----KDGAVVQNLDQLYIPVSEQHWIG 60
Query: 335 GLVIMAVEELDAGKYDC----WLGNTVLCTHNLTV 365
L + +VE DAG+Y C + LTV
Sbjct: 61 FLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTV 95
Score = 28.2 bits (63), Expect = 2.8
Identities = 10/79 (12%), Positives = 18/79 (22%), Gaps = 20/79 (25%)
Query: 282 QTVTWGQSVHLSCFVK---LPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVI 338
V LSC P ++ W+ + + K V+
Sbjct: 108 LAVPPNAPFQLSCEAVGPPEPVTI-----VWW---RG---------TTKIGGPAPSPSVL 150
Query: 339 MAVEELDAGKYDCWLGNTV 357
+ + C N
Sbjct: 151 NVTGVTQSTMFSCEAHNLK 169
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin
domain, fibronectin type III repeat, CE adhesion; 1.80A
{Homo sapiens}
Length = 215
Score = 37.1 bits (86), Expect = 0.005
Identities = 15/82 (18%), Positives = 28/82 (34%), Gaps = 16/82 (19%)
Query: 282 QTVTWGQSVHLSCFVKLPASMANQP--MSWYHYSKDKGRYQIKFRSDKFIRTVDGG---- 335
G V+++C V A +SW+ + + + I+ +
Sbjct: 28 VYTWEGNQVNITCEVF-----AYPSATISWFRDGQ-----LLPSSNYSNIKIYNTPSASY 77
Query: 336 LVIMAVEELDAGKYDCWLGNTV 357
L + E D G Y+C N +
Sbjct: 78 LEVTPDSENDFGNYNCTAVNRI 99
>2ens_A Advanced glycosylation END product-specific receptor;
beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 96
Score = 35.1 bits (81), Expect = 0.005
Identities = 16/72 (22%), Positives = 23/72 (31%), Gaps = 19/72 (26%)
Query: 282 QTVTWGQSVHLSCFVK-LPASMANQP-MSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIM 339
V G +V L+C V P P + W KD + L++
Sbjct: 20 GAVAPGGTVTLTCEVPAQP-----SPQIHWM---KDGVPLPL---------PPSPVLILP 62
Query: 340 AVEELDAGKYDC 351
+ D G Y C
Sbjct: 63 EIGPQDQGTYSC 74
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1,
isoform 2; hydrolase, immunoglobulin domain, nucleus,
protease; 2.80A {Homo sapiens}
Length = 218
Score = 37.2 bits (86), Expect = 0.005
Identities = 23/97 (23%), Positives = 31/97 (31%), Gaps = 23/97 (23%)
Query: 282 QTVTWGQSVHLSCFVK-LPASMANQPM-SWYHYSKDKGRYQIKFRSDKFIRTVDGG-LVI 338
+ V GQ V L C P W+ K I + L+
Sbjct: 28 KAVLAGQFVKLCCRATGHP-----FVQYQWF---KMNKE----------IPNGNTSELIF 69
Query: 339 MAVEELDAGKYDCWLGNTVLCTHNLTVDAHSNVADAP 375
AV DAG Y C + N T + + +V D P
Sbjct: 70 NAVHVKDAGFYVCRVNNNF--TFEFSQWSQLDVCDIP 104
Score = 28.7 bits (64), Expect = 2.6
Identities = 10/74 (13%), Positives = 22/74 (29%), Gaps = 23/74 (31%)
Query: 282 QTVTWGQSVHLSCFVKLPASMANQPM---SWYHYSKDKGRYQIKFRSDKFIRTVDGG-LV 337
Q + G ++ L C P+ W+ +++ + +
Sbjct: 128 QKLMPGSTLVLQCVAV------GSPIPHYQWF-------------KNELPLTHETKKLYM 168
Query: 338 IMAVEELDAGKYDC 351
+ V+ G Y C
Sbjct: 169 VPYVDLEHQGTYWC 182
>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding,
disease MU ectodermal dysplasia, glycoprotein,
heparin-binding, immuno domain, kinase; 1.96A {Homo
sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A
Length = 100
Score = 34.7 bits (80), Expect = 0.007
Identities = 19/93 (20%), Positives = 32/93 (34%), Gaps = 20/93 (21%)
Query: 282 QTVTWGQSVHLSCFVK-LPASMANQP-MSWYH----YSKDKGRYQIKFRSDKFIRTVDGG 335
V +V C P P M W + ++ K R+
Sbjct: 18 HAVPAANTVKFRCPAGGNP-----MPTMRWLKNGKEFKQEHRIGGYKVRNQ------HWS 66
Query: 336 LVIMAVEELDAGKYDCWLGN---TVLCTHNLTV 365
L++ +V D G Y C + N ++ T++L V
Sbjct: 67 LIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 99
>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex,
costimulation, glycoprotein, immunoglo domain, membrane,
transmembrane, receptor; 1.60A {Mus musculus} PDB:
3bp5_B 3rnq_B 3bov_A 3rnk_B
Length = 202
Score = 36.2 bits (83), Expect = 0.008
Identities = 14/74 (18%), Positives = 24/74 (32%), Gaps = 3/74 (4%)
Query: 282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFR---SDKFIRTVDGGLVI 338
TV G SV L C + + + R ++ + I
Sbjct: 12 YTVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHI 71
Query: 339 MAVEELDAGKYDCW 352
+V+ D+G+Y C
Sbjct: 72 PSVQVRDSGQYRCL 85
>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A*
1ow0_C*
Length = 218
Score = 36.0 bits (83), Expect = 0.011
Identities = 16/71 (22%), Positives = 23/71 (32%), Gaps = 8/71 (11%)
Query: 282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDK-GRYQIKFRSDKFIRTVDGGLVIMA 340
+ SV + C A + K Y+ R KF D VI
Sbjct: 18 PVIPLDGSVKIQC-------QAIREAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDH 70
Query: 341 VEELDAGKYDC 351
++ AG+Y C
Sbjct: 71 MDANKAGRYQC 81
>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural
genomics, PSI-biology, NEW YORK struc genomics research
consortium, nysgrc; 2.30A {Homo sapiens}
Length = 124
Score = 35.0 bits (80), Expect = 0.011
Identities = 16/81 (19%), Positives = 24/81 (29%), Gaps = 19/81 (23%)
Query: 282 QTVTWGQSVHLSCFVKLPASMANQPMSW-----------YHYSKDKGRYQIKFRSDKFIR 330
TV GQ++ L C N + W + +YQ+ S
Sbjct: 11 ITVEEGQTLTLKCVTS---LRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHHSAN--- 64
Query: 331 TVDGGLVIMAVEELDAGKYDC 351
+ + V D G Y C
Sbjct: 65 --QLSITVPNVTLQDEGVYKC 83
>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein,
cell membrane, cytoplasm, cytoskeleton, disease
mutation, immunoglobulin domain; NMR {Homo sapiens}
Length = 100
Score = 34.2 bits (79), Expect = 0.011
Identities = 23/94 (24%), Positives = 33/94 (35%), Gaps = 18/94 (19%)
Query: 282 QTVTWGQSVHLSCFVK-LPASMANQP-MSWYHYSKDKGRYQIKFRSDKFIRTVDGG---L 336
++ G+ + V LP P +SWY GR ++ + + G L
Sbjct: 15 MSIDEGRFCRMDFKVSGLP-----APDVSWYL----NGR-TVQSDDLHKMIVSEKGLHSL 64
Query: 337 VIMAVEELDAGKYDCWLGN---TVLCTHNLTVDA 367
+ V DAG Y C N T L V A
Sbjct: 65 IFEVVRASDAGAYACVAKNRAGEATFTVQLDVLA 98
>2ptt_A CD48 antigen; CD244, CD48, NK cell receptor, X-RAY, immune system;
1.63A {Mus musculus} PDB: 2ptv_A
Length = 110
Score = 34.4 bits (79), Expect = 0.011
Identities = 17/95 (17%), Positives = 30/95 (31%), Gaps = 14/95 (14%)
Query: 283 TVTWGQSVHLSCFVKLPASMANQPMSW----------YHYSKDKGRYQIKFRSDKFIRTV 332
G +V L ++W Y+Y+ K ++ +F+ ++
Sbjct: 14 NAYTGSNVTLKIHKDPLGPYRR--ITWLHTKNQKILEYNYNSTKTIFESEFKGRVYLEEN 71
Query: 333 DGGLVIMAVEELDAGKYDCW--LGNTVLCTHNLTV 365
+G L I V + D G Y L V
Sbjct: 72 NGALHISNVRKEDKGTYYMRVLRETENELKITLEV 106
>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed
death-1 ligand 1, complex, costimulatory, immune system;
2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A
Length = 222
Score = 36.1 bits (83), Expect = 0.011
Identities = 15/87 (17%), Positives = 27/87 (31%), Gaps = 17/87 (19%)
Query: 283 TVTWGQSVHLSCFVKLPASMANQPMSWY------------HYSKDKGRYQIKFR-----S 325
V +G ++ + C + + + Y H +D +R
Sbjct: 12 VVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLL 71
Query: 326 DKFIRTVDGGLVIMAVEELDAGKYDCW 352
+ + L I V+ DAG Y C
Sbjct: 72 KDQLSLGNAALQITDVKLQDAGVYRCM 98
>2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel,
immunoglobulin fold, IGV domain, TIM, immune system;
2.50A {Mus musculus}
Length = 116
Score = 34.5 bits (79), Expect = 0.012
Identities = 16/89 (17%), Positives = 20/89 (22%), Gaps = 26/89 (29%)
Query: 283 TVTWGQSVHLSCFVKLPASMANQPMSWYH--------------------YSKDKGRYQIK 322
G V L C W + RY +K
Sbjct: 8 KGVVGHPVTLPC--TYSTYRGITTTCWGRGQCPSSACQNTLIWTNGHRVTYQKSSRYNLK 65
Query: 323 FRSDKFIRTVDGGLVIMAVEELDAGKYDC 351
+ D L I E D+G Y C
Sbjct: 66 GHISEG----DVSLTIENSVESDSGLYCC 90
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix
bundle cytokine, receptor tyrosine kinase glycosylation;
HET: NAG BMA; 3.00A {Homo sapiens}
Length = 292
Score = 36.1 bits (83), Expect = 0.012
Identities = 14/95 (14%), Positives = 19/95 (20%), Gaps = 18/95 (18%)
Query: 282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAV 341
V G +V L C N + W + L
Sbjct: 14 LVVKPGATVTLRCV-------GNGSVEWD--------GPPSPHWTLYSDGSSSILSTNNA 58
Query: 342 EELDAGKYDCWLGNTVLCTHNLTVDAHSNVADAPT 376
+ G Y C + H V D
Sbjct: 59 TFQNTGTYRCTEPGDP---LGGSAAIHLYVKDPAR 90
Score = 35.7 bits (82), Expect = 0.020
Identities = 14/105 (13%), Positives = 26/105 (24%), Gaps = 16/105 (15%)
Query: 247 AATTTLRTVFVKVRLLQDVSNTSDSICESSVGRLKQTVTWGQSVHLSCFVKLPASMANQP 306
+ + V+ N + V Q L C + P A
Sbjct: 73 DPLGGSAAIHLYVKDPARPWNVLAQ---------EVVVFEDQDALLPCLLTDPVLEAG-- 121
Query: 307 MSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDC 351
+S + R + + G I + + + Y C
Sbjct: 122 VSLVRVRG-----RPLMRHTNYSFSPWHGFTIHRAKFIQSQDYQC 161
Score = 35.3 bits (81), Expect = 0.021
Identities = 11/89 (12%), Positives = 24/89 (26%), Gaps = 8/89 (8%)
Query: 281 KQTVTWGQSVHLSCFVK-LPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIM 339
+ G++ + C + + + ++ K + L +
Sbjct: 195 ELVRIRGEAAQIVCSASSVDVN----FDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLD 250
Query: 340 AVEELDAGKYDCWLGN---TVLCTHNLTV 365
V+ AG Y C N + V
Sbjct: 251 QVDFQHAGNYSCVASNVQGKHSTSMFFRV 279
>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B
Length = 171
Score = 35.3 bits (81), Expect = 0.013
Identities = 15/94 (15%), Positives = 29/94 (30%), Gaps = 12/94 (12%)
Query: 283 TVTWGQSVHLSCFVKLPASMANQPMSWYH-------YSKDKGRYQIKFRSDKFIRTVDGG 335
+V P+++ + + W + R F++ ++ TV G
Sbjct: 6 YGVVYGNVTFHV----PSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGS 61
Query: 336 LVIMAVEELDAGKYDCWLGNTV-LCTHNLTVDAH 368
L I + D +Y+ N L V
Sbjct: 62 LTIYNLTSSDEDEYEMESPNITDTMKFFLYVLEM 95
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein,
serine/threonine-protein KI LIMB-girdle muscular
dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB:
2j8o_A 2ill_A
Length = 197
Score = 35.5 bits (82), Expect = 0.015
Identities = 18/92 (19%), Positives = 25/92 (27%), Gaps = 18/92 (19%)
Query: 282 QTVTWGQSVHLSCFVK-LPASMANQP-MSWYH---YSKDKGRYQIKFRSDKFIRTVDGGL 336
G+ V + P P ++W + G YQ+ +
Sbjct: 114 VHALRGEVVSIKIPFSGKP-----DPVITWQKGQDLIDNNGHYQVIVTRSFTSL-----V 163
Query: 337 VIMAVEELDAGKYDCWLGN---TVLCTHNLTV 365
VE DAG Y N T L V
Sbjct: 164 FPNGVERKDAGFYVVCAKNRFGIDQKTVELDV 195
Score = 35.5 bits (82), Expect = 0.016
Identities = 22/95 (23%), Positives = 35/95 (36%), Gaps = 19/95 (20%)
Query: 282 QTVTWGQSVHLSCFVK-LPASMANQP-MSWYHYSKDKGRYQIKFRSDKFIRTVDGG---- 335
V + + L C V P +P + WY + +I K+ G
Sbjct: 14 LNVRYQSNATLVCKVTGHP-----KPIVKWY-----RQGKEIIADGLKYRIQEFKGGYHQ 63
Query: 336 LVIMAVEELDAGKYDCWLGN---TVLCTHNLTVDA 367
L+I +V + DA Y N +V T +L V+
Sbjct: 64 LIIASVTDDDATVYQVRATNQGGSVSGTASLEVEV 98
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor
tyrosine kinase, class III, recep ligand complex,
cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A
{Mus musculus}
Length = 290
Score = 35.9 bits (82), Expect = 0.017
Identities = 17/97 (17%), Positives = 30/97 (30%), Gaps = 9/97 (9%)
Query: 276 SVGRLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGR----YQIKFRSDKFIRT 331
SV + G + + C +K ++ N W + + F
Sbjct: 192 SVPETSHLLKKGDTFTVVCTIKDVSTSVN--SMWLKMNPQPQHIAQVKHNSWHRGDFNYE 249
Query: 332 VDGGLVIMAVEELDAGKYDCWLGN---TVLCTHNLTV 365
L I + D+G + C+ N + T L V
Sbjct: 250 RQETLTISSARVDDSGVFMCYANNTFGSANVTTTLKV 286
Score = 33.9 bits (77), Expect = 0.071
Identities = 12/85 (14%), Positives = 24/85 (28%), Gaps = 17/85 (20%)
Query: 282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAV 341
V G ++ L+C + + W K ++ + +
Sbjct: 22 LIVEAGDTLSLTC-------IDPDFVRWTF----------KTYFNEMVENKKNEWIQEKA 64
Query: 342 EELDAGKYDCWLGNTVLCTHNLTVD 366
E G Y C N + + + V
Sbjct: 65 EATRTGTYTCSNSNGLTSSIYVFVR 89
>2vsd_A CHIR AB1; immune system receptor, FC receptor; HET: NAG NDG MAN;
1.82A {Gallus gallus}
Length = 105
Score = 33.9 bits (78), Expect = 0.017
Identities = 15/70 (21%), Positives = 22/70 (31%), Gaps = 10/70 (14%)
Query: 282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAV 341
Q V+ G +V L C + +W + G + DK +
Sbjct: 14 QGVSLGDTVTLRCH-------LPRMAAWVQLWLN-GTLRFDKEKDKEQDAAE--FSFAVT 63
Query: 342 EELDAGKYDC 351
DAG Y C
Sbjct: 64 NLEDAGTYQC 73
>1ncn_A T lymphocyte activation antigen CD86; IG V, beta strands, immune
system; 2.70A {Homo sapiens} SCOP: b.1.1.1 PDB: 1i85_A
Length = 110
Score = 34.0 bits (78), Expect = 0.017
Identities = 11/82 (13%), Positives = 27/82 (32%), Gaps = 13/82 (15%)
Query: 283 TVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDK--------GRYQIKFRSDKFI-RTV- 332
+ ++ L C + + + + ++ G+ + K++ RT
Sbjct: 5 QAYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSF 64
Query: 333 ---DGGLVIMAVEELDAGKYDC 351
L + ++ D G Y C
Sbjct: 65 DSDSWTLRLHNLQIKDKGLYQC 86
>1sq2_N Novel antigen receptor; immunoglobulin fold, protein-protein
complex, hydrolase/immune system complex; 1.45A
{Ginglymostoma cirratum} SCOP: b.1.1.1 PDB: 1t6v_N
Length = 113
Score = 33.9 bits (78), Expect = 0.018
Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 6/74 (8%)
Query: 283 TVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGG-----LV 337
T G+S+ ++C ++ AS A WY +G + + +++ TV+ G L
Sbjct: 11 TKETGESLTINCVLR-DASYALGSTCWYRKKSGEGNEESISKGGRYVETVNSGSKSFSLR 69
Query: 338 IMAVEELDAGKYDC 351
I + D G Y C
Sbjct: 70 INDLTVEDGGTYRC 83
>1neu_A Myelin P0 protein; structural protein, glycoprotein, transmembrane,
phosphorylation, immunoglobulin fold, signal; 1.90A
{Rattus norvegicus} SCOP: b.1.1.1
Length = 124
Score = 34.2 bits (78), Expect = 0.021
Identities = 16/89 (17%), Positives = 31/89 (34%), Gaps = 20/89 (22%)
Query: 283 TVTWGQSVHLSCFVKLPASMAN--------------QPMSWYHYSKDK------GRYQIK 322
G V L C +++ +S +HY+K + G ++ +
Sbjct: 10 YGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKER 69
Query: 323 FRSDKFIRTVDGGLVIMAVEELDAGKYDC 351
+ DG +VI ++ D G + C
Sbjct: 70 IQWVGDPSWKDGSIVIHNLDYSDNGTFTC 98
>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 112
Score = 33.4 bits (76), Expect = 0.029
Identities = 14/91 (15%), Positives = 33/91 (36%), Gaps = 12/91 (13%)
Query: 282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSK----DKGRYQIKFRSDKFIRTVDGG-- 335
V G+ S + +W+ + ++ Q++ + ++ G
Sbjct: 18 VQVYDGEDAVFSLDL-----STIIQGTWFLNGEELKSNEPEGQVEPGALRYRIEQKGLQH 72
Query: 336 -LVIMAVEELDAGKYDCWLGNTVLCTHNLTV 365
L++ AV+ D+G + V + LT+
Sbjct: 73 RLILHAVKHQDSGALVGFSCPGVQDSAALTI 103
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 35.1 bits (81), Expect = 0.031
Identities = 20/96 (20%), Positives = 28/96 (29%), Gaps = 13/96 (13%)
Query: 260 RLLQDVSNTSDSICES---SVGRLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDK 316
R L +V + + C + ++ G+ L C PMS +
Sbjct: 338 RYLVEV-DQASFQCSAPFIMDAPRDLNISEGRMAELKC----RTP----PMSSVKWLLPN 388
Query: 317 GRYQIKFRSDKFIR-TVDGGLVIMAVEELDAGKYDC 351
G I DG L V D G Y C
Sbjct: 389 GTVLSHASRHPRISVLNDGTLNFSHVLLSDTGVYTC 424
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33;
2.40A {Caenorhabditis elegans} PDB: 1koa_A
Length = 573
Score = 35.2 bits (81), Expect = 0.032
Identities = 31/175 (17%), Positives = 61/175 (34%), Gaps = 20/175 (11%)
Query: 199 SHPLMDEAVAHRDNKPVFYRRDLLFTHLVVDVVQYEVFGTTSEYIVYFAATTTLRTVFVK 258
HP + A + + R + +Y+ + + + ++LR +
Sbjct: 410 EHPWLTPGNAPGRDSQIPSSRYTKIRDSIKT--KYDAWPEPLPPLGRISNYSSLRKHRPQ 467
Query: 259 VRLLQDVSNTSDSICESSVGRLKQT-VTWGQSVHLSCFVK-LPASMANQPMSWYHYSKDK 316
++D + + T V GQS + C V + ++W+ K
Sbjct: 468 EYSIRDAFWDRSEAQPRFIVKPYGTEVGEGQSANFYCRVIASSPPV----VTWH-----K 518
Query: 317 GRYQIKFRSDKFIRTVDGG---LVIMAVEELDAGKYDCWLGN---TVLCTHNLTV 365
++K +S K+++ +G L I V+ D G+Y N T L V
Sbjct: 519 DDRELK-QSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNV 572
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 35.1 bits (80), Expect = 0.034
Identities = 14/77 (18%), Positives = 19/77 (24%), Gaps = 7/77 (9%)
Query: 281 KQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMA 340
+V G V L C V + W Q G +
Sbjct: 167 NASVDVGDDVLLRCQV---EGRGLEQAGWIL----TELEQSATVMKSGGLPSLGLTLANV 219
Query: 341 VEELDAGKYDCWLGNTV 357
+L+ CW N V
Sbjct: 220 TSDLNRKNVTCWAENDV 236
>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus,
picornavirus, virus/receptor complex; 15.00A {Homo
sapiens} SCOP: i.6.1.1 PDB: 1dgi_R
Length = 302
Score = 34.7 bits (79), Expect = 0.038
Identities = 14/87 (16%), Positives = 28/87 (32%), Gaps = 17/87 (19%)
Query: 282 QTVTWGQSVHLSCFVKLPASMANQPMS--WYH---------YSKDKGRYQIKFRSDKFIR 330
G SV L C++++P W + + +G + + +F+
Sbjct: 10 VPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVA 69
Query: 331 TV------DGGLVIMAVEELDAGKYDC 351
+ L + + D G Y C
Sbjct: 70 ARLGAELRNASLRMFGLRVEDEGNYTC 96
Score = 32.0 bits (72), Expect = 0.30
Identities = 8/76 (10%), Positives = 20/76 (26%), Gaps = 11/76 (14%)
Query: 282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAV 341
L+C + ++ +W + + L+I V
Sbjct: 227 NWYLGQNEATLTCDAR--SNPEPTGYNWSTTMGPLPPFAV---------AQGAQLLIRPV 275
Query: 342 EELDAGKYDCWLGNTV 357
++ C + N +
Sbjct: 276 DKPINTTLICNVTNAL 291
>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system;
1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E
3csp_A 1py9_A
Length = 139
Score = 33.4 bits (76), Expect = 0.043
Identities = 17/86 (19%), Positives = 26/86 (30%), Gaps = 17/86 (19%)
Query: 283 TVTWGQSVHLSCFVKLPASMANQPMSW-----------YHYSKDKGRYQI---KFRSDKF 328
G L C + + + W Y KD+ Q + R++
Sbjct: 17 RALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELL 76
Query: 329 IRTVDGG---LVIMAVEELDAGKYDC 351
++ G L I V D G Y C
Sbjct: 77 KESIGEGKVALRIQNVRFSDEGGYTC 102
>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily.,
cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A
Length = 231
Score = 34.0 bits (77), Expect = 0.055
Identities = 16/86 (18%), Positives = 28/86 (32%), Gaps = 19/86 (22%)
Query: 283 TVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQI-----------------KFRS 325
V G+SV L C + + + W+ + R ++ + RS
Sbjct: 11 EVMRGKSVILDC--TPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRS 68
Query: 326 DKFIRTVDGGLVIMAVEELDAGKYDC 351
+ G LV+ + D Y C
Sbjct: 69 PPYQLDSQGRLVLAEAQVGDERDYVC 94
>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin,
beta-sandwich, mceacam1A - immunoglobulin FO spike NTD -
galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus
musculus} PDB: 1l6z_A*
Length = 208
Score = 33.5 bits (76), Expect = 0.061
Identities = 29/175 (16%), Positives = 61/175 (34%), Gaps = 25/175 (14%)
Query: 184 NDTETLPDSVLNFIRSHPLMDEAVAHRDNKPVFYRRDLLFTHLVVDVVQYEVFGTTSEYI 243
+T + + F+ + + A+ + ++ LLF + + G Y
Sbjct: 36 GNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQM-----ITMKDMGV---YT 87
Query: 244 VYFAATTTLRTVFVKVRLLQDVSNTSDSICESSVGRLKQTVTWGQSVHLSCFVKLPASMA 303
+ R VR T + ++ TV SV L+C ++
Sbjct: 88 LD-MTDENYRRTQATVRFHVHQPVTQPFLQVTN-----TTVKELDSVTLTC-------LS 134
Query: 304 NQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGG-LVIMAVEELDAGKYDCWLGNTV 357
N + + + Q+ +++ + + L I ++ DAG+Y C + N V
Sbjct: 135 NDIGANIQWLFNSQSLQL---TERMTLSQNNSILRIDPIKREDAGEYQCEISNPV 186
Score = 28.9 bits (64), Expect = 2.1
Identities = 13/95 (13%), Positives = 31/95 (32%), Gaps = 12/95 (12%)
Query: 282 QTVTWGQSVHLSC-----------FVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIR 330
V +V L + K + ++ ++ + + + + + S + I
Sbjct: 9 PQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNM-NFTGQAYSGREII 67
Query: 331 TVDGGLVIMAVEELDAGKYDCWLGNTVLCTHNLTV 365
+G L+ + D G Y + + TV
Sbjct: 68 YSNGSLLFQMITMKDMGVYTLDMTDENYRRTQATV 102
>1xed_A Polymeric-immunoglobulin receptor; IG-like fold, immune system;
1.90A {Homo sapiens} SCOP: b.1.1.1
Length = 117
Score = 32.5 bits (74), Expect = 0.063
Identities = 18/111 (16%), Positives = 33/111 (29%), Gaps = 24/111 (21%)
Query: 283 TVTWGQSVHLSCFVKLPASMANQPMSWYHYSKD-----------------KGRYQIKFRS 325
G SV ++C+ + + W GR +
Sbjct: 11 NSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFP 70
Query: 326 DKFIRTVDGGLVIMAVEELDAGKYDCWLGNTVLCTHNLTVDAHSNVADAPT 376
+ V+ I + + D+G+Y C LG + L+ D V +
Sbjct: 71 ENGTFVVN----IAQLSQDDSGRYKCGLGIN---SRGLSFDVSLEVLEHHH 114
>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune
system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A
4f8q_A
Length = 226
Score = 33.5 bits (76), Expect = 0.066
Identities = 17/87 (19%), Positives = 26/87 (29%), Gaps = 17/87 (19%)
Query: 283 TVTWGQSVHLSCFVKLPASMANQPMSW---------YHYSKDKGRY-----QIKFRSDKF 328
G+ L C + S + W Y+ K + R+
Sbjct: 15 LAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSIL 74
Query: 329 IRTVDGG---LVIMAVEELDAGKYDCW 352
+ G L I V D+GKY C+
Sbjct: 75 RDGITAGKAALRIHNVTASDSGKYLCY 101
>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor,
immune system, IG domain, cytotoxicity, C2-type IG-like
domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 188
Score = 33.2 bits (76), Expect = 0.078
Identities = 13/70 (18%), Positives = 18/70 (25%), Gaps = 8/70 (11%)
Query: 282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAV 341
V + V + C N Y + G R R I +
Sbjct: 13 FMVPKEKQVTICC-------QGNYGAVEYQLHFE-GSLFAVDRPKPPERINKVKFYIPDM 64
Query: 342 EELDAGKYDC 351
AG+Y C
Sbjct: 65 NSRMAGQYSC 74
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 33.9 bits (78), Expect = 0.080
Identities = 20/106 (18%), Positives = 34/106 (32%), Gaps = 14/106 (13%)
Query: 258 KVRLLQDVSNTSDSICESSVGRLKQ----TVTWGQSVHLSCFVKLPASMANQPM-SWYHY 312
+ + DV + C + R ++ V G +V C A P W
Sbjct: 367 EFKDFPDVLLPNYFTCRRARIRDRKAQQVFVDEGHTVQFVC----RADGDPPPAILWLS- 421
Query: 313 SKDKGRYQIKFRSDKFIRT-VDGGLVIMAVEELDAGKYDCWLGNTV 357
+ + +S+ + DG L + + D G Y C N
Sbjct: 422 --PRKHL-VSAKSNGRLTVFPDGTLEVRYAQVQDNGTYLCIAANAG 464
>1zox_A CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor,
structural genomics, PSI, protein structure initiative;
2.10A {Mus musculus}
Length = 113
Score = 32.0 bits (73), Expect = 0.081
Identities = 18/111 (16%), Positives = 30/111 (27%), Gaps = 26/111 (23%)
Query: 283 TVTWGQSVHLSCFVKLPASMANQPMSWY-----------------HYSKDKGRYQIKFRS 325
+ S+ + C + + + W K R I+
Sbjct: 12 SGQEQGSLTVQC--RYTSGWKDYKKYWCQGVPQRSCKTLVETDASEQLVKKNRVSIRDNQ 69
Query: 326 DKFIRTVDGGLVIMAVEELDAGKYDCWLGNTVLCTHNLTVDAHSNVADAPT 376
FI TV + + DAG Y C + + N+ PT
Sbjct: 70 RDFIFTVT----MEDLRMSDAGIYWCGITKG---GLDPMFKVTVNIGPVPT 113
>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody,
immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S
3cm9_S 3chn_J 3cm9_J
Length = 585
Score = 33.8 bits (76), Expect = 0.084
Identities = 15/89 (16%), Positives = 26/89 (29%), Gaps = 5/89 (5%)
Query: 282 QTVTWGQSVHLSCFVKLPASMANQP-MSWYHYSKDKGRYQIKFRSDKFIRTVDGG----L 336
T G+++ + C S + W + Q + S F+ + L
Sbjct: 452 VTAVLGETLKVPCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSL 511
Query: 337 VIMAVEELDAGKYDCWLGNTVLCTHNLTV 365
+ V D G Y C + V
Sbjct: 512 TLNLVTRADEGWYWCGVKQGHFYGETAAV 540
Score = 32.7 bits (73), Expect = 0.20
Identities = 14/89 (15%), Positives = 27/89 (30%), Gaps = 13/89 (14%)
Query: 281 KQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKD--------KGRYQIKFRSDKFIRTV 332
+ G SV ++C+ + + W Y + + T
Sbjct: 9 EVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTN 68
Query: 333 DGG-----LVIMAVEELDAGKYDCWLGNT 356
+ I + + D+G+Y C LG
Sbjct: 69 FPENGTFVVNIAQLSQDDSGRYKCGLGIN 97
Score = 29.2 bits (64), Expect = 2.6
Identities = 21/110 (19%), Positives = 33/110 (30%), Gaps = 19/110 (17%)
Query: 263 QDVSNTSDSICESSVGRLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIK 322
DVS TV G++V ++C P N Y + +
Sbjct: 103 FDVSLEVSQGPGLLNDTKVYTVDLGRTVTINC----PFKTENAQKRKSLYKQIGLYPVLV 158
Query: 323 FRSDKFIRTVDGG---------------LVIMAVEELDAGKYDCWLGNTV 357
S ++ G +VI + DAG+Y C G+
Sbjct: 159 IDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDS 208
Score = 28.0 bits (61), Expect = 5.3
Identities = 16/91 (17%), Positives = 26/91 (28%), Gaps = 23/91 (25%)
Query: 282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKD-----------------KGRYQIKFR 324
SV C L +AN S +GR + +
Sbjct: 227 VYEDLRGSVTFHC--ALGPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQ 284
Query: 325 SDKFIRTVDGGLVIMAVEELDAGKYDCWLGN 355
+ +VI + + DAG+Y C +
Sbjct: 285 DKDGSFS----VVITGLRKEDAGRYLCGAHS 311
Score = 27.7 bits (60), Expect = 7.5
Identities = 14/93 (15%), Positives = 22/93 (23%), Gaps = 25/93 (26%)
Query: 282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKD-------------------KGRYQIK 322
G SV + C + W + +GR +
Sbjct: 341 VKGVAGSSVAVLCPYN--RKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLL 398
Query: 323 FRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGN 355
TV ++ + DAG Y C
Sbjct: 399 EEPGNGTFTV----ILNQLTSRDAGFYWCLTNG 427
>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon,
OKT3 FAB, signaling protein/antibiotic complex; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*
Length = 204
Score = 33.3 bits (75), Expect = 0.089
Identities = 18/86 (20%), Positives = 27/86 (31%), Gaps = 14/86 (16%)
Query: 287 GQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGG-LVIMAVEEL- 344
G +V L+C + + W H K I D D L + EL
Sbjct: 128 GTTVILTCPQYPGSEI-----LWQHNDK-----NIGGDEDDKNIGSDEDHLSLKEFSELE 177
Query: 345 DAGKYDCWLGNTV--LCTHNLTVDAH 368
+G Y C+ + L + A
Sbjct: 178 QSGYYVCYPRGSKPEDANFYLYLRAR 203
>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral
protein-immune system compl; HET: NAG SUC; 1.99A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B*
2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C*
3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A
3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...
Length = 184
Score = 33.0 bits (75), Expect = 0.090
Identities = 20/110 (18%), Positives = 38/110 (34%), Gaps = 21/110 (19%)
Query: 280 LKQTVT--WGQSVHLSCFVKLPASMANQPMSWYH-----------YSKDKGRYQIKFRSD 326
+K+ V G +V L+C + W + KG ++ R+D
Sbjct: 1 MKKVVLGKKGDTVELTCTAS---QKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRAD 57
Query: 327 KFIRTVDGG---LVIMAVEELDAGKYDCWLGNTVLC--THNLTVDAHSNV 371
D G L+I ++ D+ Y C + + + A+S+
Sbjct: 58 SRRSLWDQGNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDT 107
Score = 27.6 bits (61), Expect = 4.5
Identities = 12/88 (13%), Positives = 24/88 (27%), Gaps = 21/88 (23%)
Query: 282 QTVTWGQSVHLSCFVKLPASMANQPM-SWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMA 340
+ GQS+ L+ + + P L +
Sbjct: 107 THLLQGQSLTLTL----ESPPGSSPSVQCR-------------SPRGKNIQGGKTLSVSQ 149
Query: 341 VEELDAGKYDCWLGN---TVLCTHNLTV 365
+E D+G + C + V ++ V
Sbjct: 150 LELQDSGTWTCTVLQNQKKVEFKIDIVV 177
>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin
fold, immune surveillance of cell stress PROT A/B,
MIC-A/B binding, epithelium; 3.04A {Homo sapiens}
Length = 259
Score = 33.3 bits (76), Expect = 0.094
Identities = 21/100 (21%), Positives = 38/100 (38%), Gaps = 25/100 (25%)
Query: 283 TVTWGQSVHLSCFVKLPASMANQPMSWYH-----------------YSKDKGRYQIKFR- 324
++ ++V L+C S + + WY + GRY + F+
Sbjct: 147 SMPVRKAVTLNC--LYETSWWSYYIFWYKRLPSKEMIFLIRQGSDEQNAKSGRYSVNFKK 204
Query: 325 SDKFIRTVDGGLVIMAVEELDAGKYDCWLGNTVLCTHNLT 364
+ K + L I A++ D+ KY C LG ++ L
Sbjct: 205 AAKSVA-----LTISALQLEDSAKYFCALGESLTRADKLI 239
Score = 29.4 bits (66), Expect = 1.7
Identities = 13/85 (15%), Positives = 24/85 (28%), Gaps = 17/85 (20%)
Query: 283 TVTWGQSVHLSCF-----------VKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRT 331
G S ++C A Q + +Y + K+ T
Sbjct: 13 IRQTGSSAEITCDLAEGSTGYIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPGKYD-T 71
Query: 332 VDGG-----LVIMAVEELDAGKYDC 351
+++ + E D+G Y C
Sbjct: 72 YGSTRKNLRMILRNLIENDSGVYYC 96
>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural
cytotoxicity receptor, NK cell receptor, immunoglobulin
fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4
Length = 242
Score = 33.3 bits (76), Expect = 0.095
Identities = 13/70 (18%), Positives = 18/70 (25%), Gaps = 8/70 (11%)
Query: 282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAV 341
V + V + C N Y + G R R I +
Sbjct: 16 FMVPKEKQVTICC-------QGNYGAVEYQLHFE-GSLFAVDRPKPPERINKVKFYIPDM 67
Query: 342 EELDAGKYDC 351
AG+Y C
Sbjct: 68 NSRMAGQYSC 77
>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold,
natural killer cell receptor, immune SY; HET: NAG; 1.80A
{Homo sapiens} PDB: 1im9_D
Length = 316
Score = 33.3 bits (76), Expect = 0.10
Identities = 13/70 (18%), Positives = 18/70 (25%), Gaps = 11/70 (15%)
Query: 282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAV 341
V G V L C + + K+ + F R + V
Sbjct: 33 AVVPRGGHVTLRC-------HYRHRFNNFMLYKEDRIHIPIFHG----RIFQESFNMSPV 81
Query: 342 EELDAGKYDC 351
AG Y C
Sbjct: 82 TTAHAGNYTC 91
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain,
cytokine decoy RE virus/viral protein, type-1
interferon, soluble A/B-IFNR; HET: EPE; 2.10A
{Ectromelia virus}
Length = 329
Score = 33.3 bits (75), Expect = 0.11
Identities = 15/73 (20%), Positives = 26/73 (35%), Gaps = 12/73 (16%)
Query: 281 KQTVTWGQSVHLSCFVKLPASMANQPMS--WYHYSKDKGRYQIKFRSDKFIRTVDGGLVI 338
+ + L C A + WY K ++ K+ ++ L+I
Sbjct: 137 ELGTHDKYGIDLYC----GILYAKHYNNITWY-----KNNQELIIDGTKYSQS-GQNLII 186
Query: 339 MAVEELDAGKYDC 351
E D+G+YDC
Sbjct: 187 HNPELEDSGRYDC 199
Score = 33.3 bits (75), Expect = 0.11
Identities = 14/81 (17%), Positives = 25/81 (30%), Gaps = 4/81 (4%)
Query: 281 KQTVTWGQSVHLSCFVKL-PASMANQPMSWYHYSK--DKGRYQIKFRSDKFIRTVDGGLV 337
K VT G+ +++C + + + W + S + + + L
Sbjct: 237 KINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEATLY 296
Query: 338 IMAVEELDAGK-YDCWLGNTV 357
V E G Y C N
Sbjct: 297 FENVTEEYIGNTYTCRGHNYY 317
Score = 31.3 bits (70), Expect = 0.43
Identities = 16/104 (15%), Positives = 30/104 (28%), Gaps = 11/104 (10%)
Query: 277 VGRLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKF---IRTVD 333
G + G+ C + +S + KD K + R +
Sbjct: 34 GGTMNDMAALGEPFSAKCPPI-----EDSLLSHRYNDKDNVVNWEKIGKTRRPLNRRVKN 88
Query: 334 GGLVIMAVEELDAG-KYDCWLGNTVLCTHNLTVDAHSNVADAPT 376
G L I D+ +Y C + + S++ P+
Sbjct: 89 GDLWIANYTSNDSHRRYLCTVTTKNGDC--VQGIVRSHIRKPPS 130
>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A*
1qa9_A
Length = 182
Score = 32.5 bits (74), Expect = 0.11
Identities = 13/95 (13%), Positives = 29/95 (30%), Gaps = 18/95 (18%)
Query: 285 TWGQSVHLSCFVKLPASMANQPM---SWYHYSKD------KGRYQIKFRSDKFIRTVDGG 335
GQ ++L P+ + + W S + + D + +G
Sbjct: 12 ALGQDINLDI----PSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGT 67
Query: 336 LVIMAVEELDAGKYDCWLGN-----TVLCTHNLTV 365
L I ++ D Y + + + +L +
Sbjct: 68 LKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKI 102
>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding
domain of CD48, immune system; HET: NAG; 2.60A {Rattus
norvegicus}
Length = 180
Score = 32.6 bits (74), Expect = 0.12
Identities = 18/98 (18%), Positives = 32/98 (32%), Gaps = 14/98 (14%)
Query: 283 TVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDK----------GRYQIKFRSDKFIRTV 332
G +V L+ AS Q ++W H + K ++ F+ +
Sbjct: 10 NAITGSNVTLTILKHPLAS--YQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDKT 67
Query: 333 DGGLVIMAVEELDAGKYDCWLGNTVLCTH--NLTVDAH 368
+G L I V + D G Y + + + V
Sbjct: 68 NGALRIYNVSKEDRGDYYMRMLHETEDQWKITMEVYEM 105
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus}
SCOP: b.1.1.1 b.1.1.3
Length = 176
Score = 32.6 bits (74), Expect = 0.12
Identities = 14/74 (18%), Positives = 28/74 (37%), Gaps = 5/74 (6%)
Query: 287 GQSVHLSCFVKLPASMANQPMSWYHYSK----DKGRYQIKFRSDKFIRTVDGGLVIMAVE 342
G ++L+ + + W S K + + +S F +G L I +
Sbjct: 11 GHGINLNI-PNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLT 69
Query: 343 ELDAGKYDCWLGNT 356
D+G Y+ + +T
Sbjct: 70 RDDSGTYNVTVYST 83
>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell,
HLA, major histocompatibility complex class I (MHC class
I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 257
Score = 33.0 bits (75), Expect = 0.13
Identities = 10/71 (14%), Positives = 20/71 (28%), Gaps = 8/71 (11%)
Query: 282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGG-LVIMA 340
V ++V L C+ + + ++ + V I
Sbjct: 16 PLVKSEETVILQCWSDVRF-------QHFLLHREGKFKDTLHLIGEHHDGVSKANFSIGP 68
Query: 341 VEELDAGKYDC 351
+ + AG Y C
Sbjct: 69 MMQDLAGTYRC 79
>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG,
inhibitory receptor, disulfide, immune system; 1.70A
{Homo sapiens}
Length = 196
Score = 32.5 bits (74), Expect = 0.13
Identities = 14/70 (20%), Positives = 22/70 (31%), Gaps = 8/70 (11%)
Query: 282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAV 341
++WG SV + C Y K+ R + I ++
Sbjct: 14 SVISWGNSVTIWC-------QGTLEAREYRLDKE-ESPAPWDRQNPLEPKNKARFSIPSM 65
Query: 342 EELDAGKYDC 351
E AG+Y C
Sbjct: 66 TEDYAGRYRC 75
>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond,
glycoprotein, immunoglobulin membrane, transmembrane;
HET: NAG; 2.21A {Mus musculus}
Length = 108
Score = 31.4 bits (71), Expect = 0.14
Identities = 15/80 (18%), Positives = 25/80 (31%), Gaps = 19/80 (23%)
Query: 283 TVTWGQSVHLSCFVKLPASMANQPMSWY-----------HYSKDKGRYQIKFRSDKFIRT 331
TV G + L+C V N + W + R ++ S
Sbjct: 17 TVVEGGTAILTCRVD---QNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWH---- 69
Query: 332 VDGGLVIMAVEELDAGKYDC 351
+ + + V D G+Y C
Sbjct: 70 -ELSISVSDVSLSDEGQYTC 88
>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like
protein 3, nephrin- like 2, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 31.4 bits (71), Expect = 0.15
Identities = 16/79 (20%), Positives = 27/79 (34%), Gaps = 16/79 (20%)
Query: 282 QTVTWGQSVHLSCFVK---LPASMANQPMSWYH-----YSKDKGRYQIKFRSDKFIRTVD 333
Q G+ + CF++ P ++W S GRY ++ + V
Sbjct: 23 QHALHGEKGQIKCFIRSTPPPDR-----IAWSWKENVLESGTSGRYTVE--TISTEEGVI 75
Query: 334 GGLVIMAVEELD-AGKYDC 351
L I + D Y+C
Sbjct: 76 STLTISNIVRADFQTIYNC 94
>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform
1; immunoglobulin-like fold, immune system; 1.85A {Homo
sapiens}
Length = 196
Score = 32.5 bits (74), Expect = 0.15
Identities = 13/70 (18%), Positives = 22/70 (31%), Gaps = 8/70 (11%)
Query: 282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAV 341
++ G SV + C Y K+ G + + I ++
Sbjct: 14 SVISRGNSVTIRC-------QGTLEAQEYRLVKE-GSPEPWDTQNPLEPKNKARFSIPSM 65
Query: 342 EELDAGKYDC 351
E AG+Y C
Sbjct: 66 TEHHAGRYRC 75
>2pnd_A V-SET and immunoglobulin domain containing 4; complement receptor,
IG-like domain, immune system; 1.00A {Mus musculus} PDB:
2icc_A 2ice_S* 2icf_S*
Length = 119
Score = 31.5 bits (71), Expect = 0.16
Identities = 15/84 (17%), Positives = 19/84 (22%), Gaps = 15/84 (17%)
Query: 283 TVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSD-------------KFI 329
T TW V + C + W S K
Sbjct: 12 TGTWKGDVKIQCIYDPLRGYRQVLVKWLVRHGSDSVTIFLRDSTGDHIQQAKYRGRLKVS 71
Query: 330 RTVDGG--LVIMAVEELDAGKYDC 351
V G L I ++ D Y C
Sbjct: 72 HKVPGDVSLQINTLQMDDRNHYTC 95
>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system;
3.00A {Homo sapiens}
Length = 193
Score = 32.3 bits (73), Expect = 0.18
Identities = 11/82 (13%), Positives = 22/82 (26%), Gaps = 14/82 (17%)
Query: 283 TVTWGQSVHLSCFVKLPASMANQPMSWYH--------YSKDKGRYQIKFRSDKFIRTV-- 332
G+SV L ++W + +I + K + +
Sbjct: 9 NGILGESVTLPLEFPAGEK--VNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNF 66
Query: 333 --DGGLVIMAVEELDAGKYDCW 352
L + ++ D G Y
Sbjct: 67 TQSYSLQLSNLKMEDTGSYRAQ 88
>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin
domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr
virus}
Length = 201
Score = 32.3 bits (73), Expect = 0.18
Identities = 18/119 (15%), Positives = 35/119 (29%), Gaps = 29/119 (24%)
Query: 283 TVTWGQSVHLSCFVKLPASMANQPMSWYHYSKD--------------------KGRYQIK 322
T G+ V L+ + + + +SW+ +G + I
Sbjct: 2 TAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIH 61
Query: 323 FRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGN---TVLCTHNLTVDAHSNVADAPTRL 378
++ LV+ A G Y C + V +L+V ++ R
Sbjct: 62 RSAN------TFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVVKPLTLSVHSERS 114
Score = 29.2 bits (65), Expect = 1.7
Identities = 11/81 (13%), Positives = 19/81 (23%), Gaps = 12/81 (14%)
Query: 282 QTVTWGQSVHLSCFVK-LPASMANQPM-SWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIM 339
+ ++C V P P W + + ++ DG L +
Sbjct: 114 SQFPDFSVLTVTCTVNAFP-----HPHVQWLM--PEGVEPAPTAANGGVMKEKDGSLSVA 166
Query: 340 AVEEL---DAGKYDCWLGNTV 357
L C N
Sbjct: 167 VDLSLPKPWHLPVTCVGKNDK 187
>3bia_X T-cell immunoglobulin and mucin domain- containing protein 4; beta
barrel, immunoglobulin fold, IGV domain, TIM,
glycoprotein; HET: TLA; 2.20A {Mus musculus} PDB:
3bi9_X* 3bib_X*
Length = 116
Score = 31.1 bits (70), Expect = 0.20
Identities = 16/89 (17%), Positives = 25/89 (28%), Gaps = 25/89 (28%)
Query: 283 TVTWGQSVHLSCFVKLPASMANQPMSWYH--------------------YSKDKGRYQIK 322
GQ V L C S + M W S+ +Y +
Sbjct: 7 IGFLGQPVTLPCHYL-SWSQSRNSMCWGKGSCPNSKCNAELLRTDGTRIISRKSTKYTLL 65
Query: 323 FRSDKFIRTVDGGLVIMAVEELDAGKYDC 351
+ ++ + L I D+G Y C
Sbjct: 66 GK----VQFGEVSLTISNTNRGDSGVYCC 90
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell
adhesion, transmembrane, disulfide bond, alternative
splicing; HET: NAG; 1.95A {Rattus norvegicus}
Length = 190
Score = 32.1 bits (73), Expect = 0.20
Identities = 17/94 (18%), Positives = 30/94 (31%), Gaps = 17/94 (18%)
Query: 282 QTVTWGQSVHLSCFVK---LPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGG--- 335
+ GQ + C P W ++ +I S +F
Sbjct: 102 ENKNEGQDAMMYCKSVGYPHPE------WMWRK-KENGVFEEISNSSGRFFIINKENYTE 154
Query: 336 LVIMAVE-ELDAGKYDCWLGN---TVLCTHNLTV 365
L I+ ++ D G+Y+C N + + L V
Sbjct: 155 LNIVNLQITEDPGEYECNATNSIGSASVSTVLRV 188
Score = 31.0 bits (70), Expect = 0.47
Identities = 13/88 (14%), Positives = 25/88 (28%), Gaps = 11/88 (12%)
Query: 282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAV 341
V L C + +S W K+ + + + + + I
Sbjct: 13 IIRDSLLPVTLQCNLT-SSSHTLMYSYWT---KNGV----ELTATRKNAS-NMEYRINKP 63
Query: 342 EELDAGKYDCW--LGNTVLCTHNLTVDA 367
D+G+Y C + + V A
Sbjct: 64 RAEDSGEYHCVYHFVSAPKANATIEVKA 91
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold,
transmembrane, MHC lipoprotein, polymorphism; 3.90A
{Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3
PDB: 1wip_A 1wiq_A 3t0e_E
Length = 363
Score = 32.5 bits (73), Expect = 0.20
Identities = 20/109 (18%), Positives = 40/109 (36%), Gaps = 21/109 (19%)
Query: 281 KQTVT--WGQSVHLSCFVKLPASMANQPMSWYHYSKD-----------KGRYQIKFRSDK 327
K+ V G +V L+C + W + ++ KG ++ R+D
Sbjct: 1 KKVVLGKKGDTVELTCTAS---QKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADS 57
Query: 328 FIRTVDGG---LVIMAVEELDAGKYDCWLGN--TVLCTHNLTVDAHSNV 371
D G L+I ++ D+ Y C + + + + A+S+
Sbjct: 58 RRSLWDQGNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDT 106
Score = 28.2 bits (62), Expect = 5.0
Identities = 13/94 (13%), Positives = 26/94 (27%), Gaps = 21/94 (22%)
Query: 282 QTVTWGQSVHLSCFVKLPASMANQP-MSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMA 340
+ GQS+ L+ + + P + L +
Sbjct: 106 THLLQGQSLTLTL----ESPPGSSPSVQCR-------------SPRGKNIQGGKTLSVSQ 148
Query: 341 VEELDAGKYDCWLGN---TVLCTHNLTVDAHSNV 371
+E D+G + C + V ++ V A
Sbjct: 149 LELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQKA 182
>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells,
immunological receptors, immunoglobulin fold; 1.70A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D
2dli_A 2dl2_A 3h8n_A
Length = 201
Score = 31.8 bits (72), Expect = 0.21
Identities = 10/71 (14%), Positives = 20/71 (28%), Gaps = 8/71 (11%)
Query: 282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGG-LVIMA 340
V ++V L C ++ + ++ + V I
Sbjct: 17 PLVKSEETVILQC-------WSDVMFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISR 69
Query: 341 VEELDAGKYDC 351
+ + AG Y C
Sbjct: 70 MTQDLAGTYRC 80
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region
plasiticity, cell adhesion; HET: PG6; 2.50A {Homo
sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A
Length = 331
Score = 32.4 bits (73), Expect = 0.21
Identities = 14/76 (18%), Positives = 20/76 (26%), Gaps = 10/76 (13%)
Query: 282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAV 341
V L+C AN P + YH++ G +
Sbjct: 242 NWYLQRMDVKLTCKAD-----ANPPATEYHWTTLNGSL-----PKGVEAQNRTLFFKGPI 291
Query: 342 EELDAGKYDCWLGNTV 357
AG Y C N +
Sbjct: 292 NYSLAGTYICEATNPI 307
Score = 31.3 bits (70), Expect = 0.51
Identities = 16/86 (18%), Positives = 26/86 (30%), Gaps = 16/86 (18%)
Query: 282 QTVTWGQSVHLSCFVKLPA-SMANQPMSWYH-----------YSKDKGRYQIKFRSDKF- 328
G V L C P S+ ++W Y+ G + ++
Sbjct: 24 MYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSVLAPYRERVE 83
Query: 329 ---IRTVDGGLVIMAVEELDAGKYDC 351
DG + + +E D G Y C
Sbjct: 84 FLRPSFTDGTIRLSRLELEDEGVYIC 109
>3noi_A Natural cytotoxicity triggering receptor 3; immune system, innate
immunity, immunoglobulin-like I2 type natural killer
cell activation; HET: 1PG; 1.84A {Homo sapiens} PDB:
3pv6_B*
Length = 120
Score = 31.1 bits (70), Expect = 0.21
Identities = 16/77 (20%), Positives = 25/77 (32%), Gaps = 12/77 (15%)
Query: 287 GQSVHLSC-FVKLPASMANQPMSWY-----------HYSKDKGRYQIKFRSDKFIRTVDG 334
G S L C F +A ++W+ + + + S +F+
Sbjct: 22 GSSAFLPCSFNASQGRLAIGSVTWFRDEVVPGKEVRNGTPEFRGRLAPLASSRFLHDHQA 81
Query: 335 GLVIMAVEELDAGKYDC 351
L I V DA Y C
Sbjct: 82 ELHIRDVRGHDASIYVC 98
>2nms_A CMRF35-like-molecule 1; IG-superfamily, IG-V, NKP44-like, myeloid
IG-like receptor, inhibitory receptor, myelo-monocytic
cells; 2.60A {Homo sapiens}
Length = 124
Score = 31.0 bits (70), Expect = 0.21
Identities = 17/114 (14%), Positives = 30/114 (26%), Gaps = 26/114 (22%)
Query: 283 TVTWGQSVHLSCFVKLPASMANQPMSWY-----------------HYSKDKGRYQIKFRS 325
S+ + C + W + R IK
Sbjct: 13 NGLERGSLTVQCV--YRSGWETYLKWWCRGAIWRDCKILVKTSGSEQEVKRDRVSIKDNQ 70
Query: 326 DKFIRTVDGGLVIMAVEELDAGKYDCWL---GNTVLCTHNLTVDAHSNVADAPT 376
TV + + + DA Y C + GN + T +T+D + +
Sbjct: 71 KNRTFTVT----MEDLMKTDADTYWCGIEKTGNDLGVTVQVTIDPAPVTQEETS 120
>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor
tyrosine kinase, 3D-domain swapping, transferase; 1.90A
{Homo sapiens} SCOP: b.1.1.4
Length = 118
Score = 30.6 bits (69), Expect = 0.32
Identities = 11/64 (17%), Positives = 19/64 (29%), Gaps = 8/64 (12%)
Query: 308 SWYHYSK---DKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGN---TVLCTH 361
W H + + +++ + I G L+ + G Y N T T
Sbjct: 38 HWLHNGQPLRESKIIHVEYYQEGEISE--GCLLFNKPTHYNNGNYTLIAKNPLGTANQTI 95
Query: 362 NLTV 365
N
Sbjct: 96 NGHF 99
>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion;
2.40A {Homo sapiens}
Length = 145
Score = 30.9 bits (69), Expect = 0.33
Identities = 18/82 (21%), Positives = 29/82 (35%), Gaps = 21/82 (25%)
Query: 282 QTVTWGQSVHLSCFVKLPASMANQPMSWYH------------YSKDKGRYQIKFRSDKFI 329
+TV G +V L C VK + + W + +D R Q+ +
Sbjct: 48 ETVVAGGTVVLKCQVK---DHEDSSLQWSNPAQQTLYFGEKRALRDN-RIQLVTSTPH-- 101
Query: 330 RTVDGGLVIMAVEELDAGKYDC 351
+ + I V D G+Y C
Sbjct: 102 ---ELSISISNVALADEGEYTC 120
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase,
glycoprotein, receptor protei tyrosine phosphatase, cell
adhesion; HET: NAG; 3.10A {Homo sapiens}
Length = 731
Score = 32.1 bits (72), Expect = 0.40
Identities = 18/120 (15%), Positives = 34/120 (28%), Gaps = 4/120 (3%)
Query: 238 TTSEYIVYFAATTTLRTVFVKVRLLQDVSNTSDSICESSVGRLKQTVTWGQSVHLSCFVK 297
+ Y V F T+ ++ + ++ V + + V GQ C
Sbjct: 131 WPNFYQVIFEVITSGHQGYLAIDEVK-VLGHPCTRTPHFLRIQNVEVNAGQFATFQCSAI 189
Query: 298 LPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGNTV 357
+ + D +K R ++ + DAGKY C +
Sbjct: 190 GRTVAGD---RLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEG 246
>2or7_A T-cell immunoglobulin and mucin domain- containing protein 2; beta
barrel, immunoglobulin fold, IGV domain, TIM, immune
system; 1.50A {Mus musculus}
Length = 115
Score = 30.3 bits (68), Expect = 0.40
Identities = 18/89 (20%), Positives = 21/89 (23%), Gaps = 25/89 (28%)
Query: 283 TVTWGQSVHLSCFVKLPASMANQPMSWYH--------------------YSKDKGRYQIK 322
G V L C PM W + RYQ+K
Sbjct: 8 QGLAGHPVTLPCIYS-THLGGIVPMCWGLGECRHSYCIRSLIWTNGYTVTHQRNSRYQLK 66
Query: 323 FRSDKFIRTVDGGLVIMAVEELDAGKYDC 351
I + L I D G Y C
Sbjct: 67 GN----ISEGNVSLTIENTVVGDGGPYCC 91
>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like
folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A
2dyp_D 2otp_A 3q2c_A
Length = 198
Score = 31.0 bits (70), Expect = 0.40
Identities = 13/71 (18%), Positives = 21/71 (29%), Gaps = 10/71 (14%)
Query: 282 QTVTWGQSVHLSCFVKLPASMANQPMSWYH-YSKDKGRYQIKFRSDKFIRTVDGGLVIMA 340
+T G V L C Y Y + K I + ++ I +
Sbjct: 14 SVITQGSPVTLRCQGGQET-------QEYRLYREKKTAPWITRIPQELVKKGQ--FPIPS 64
Query: 341 VEELDAGKYDC 351
+ G+Y C
Sbjct: 65 ITWEHTGRYRC 75
>1gxe_A Myosin binding protein C, cardiac-type; cytoskeleton, muscle, IGI,
thick filament, immunoglobulin domain; NMR {Homo
sapiens} SCOP: b.1.1.4
Length = 139
Score = 30.1 bits (67), Expect = 0.49
Identities = 10/89 (11%), Positives = 23/89 (25%), Gaps = 6/89 (6%)
Query: 283 TVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKF-IRTVDGG--LVIM 339
TV W +++ + + + + + + T +
Sbjct: 49 TVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETEGRVRVETTKDRSIFTVE 108
Query: 340 AVEELDAGKYDCWLGN---TVLCTHNLTV 365
E+ D G Y + N + V
Sbjct: 109 GAEKEDEGVYTVTVKNPVGEDQVNLTVKV 137
>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily,
immune system; HET: NAG; 3.00A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.3 PDB: 1i8l_A*
Length = 201
Score = 30.7 bits (69), Expect = 0.61
Identities = 17/79 (21%), Positives = 28/79 (35%), Gaps = 11/79 (13%)
Query: 283 TVTWGQSVHLSCFVKLPA-SMANQPMSW---------YHYSKDKGRYQIKFRSDKFIRTV 332
T + LSC + +A + W + K R+ F T
Sbjct: 5 TKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTI-FDITN 63
Query: 333 DGGLVIMAVEELDAGKYDC 351
+ +VI+A+ D G Y+C
Sbjct: 64 NLSIVILALRPSDEGTYEC 82
>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1
(isoform 2); hydrolase, immunoglobulin domain, nucleus,
protease; 1.15A {Homo sapiens}
Length = 91
Score = 29.2 bits (66), Expect = 0.62
Identities = 11/71 (15%), Positives = 22/71 (30%), Gaps = 17/71 (23%)
Query: 282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGG-LVIMA 340
Q + G ++ L C P+ Y + K+ + + ++
Sbjct: 13 QKLMPGSTLVLQCVA------VGSPIPHYQWFKN----------ELPLTHETKKLYMVPY 56
Query: 341 VEELDAGKYDC 351
V+ G Y C
Sbjct: 57 VDLEHQGTYWC 67
>1hkf_A NKP44, NK cell activating receptor; natural cytotoxicity receptor,
immunoglobulin domain; 2.2A {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 29.6 bits (66), Expect = 0.70
Identities = 15/86 (17%), Positives = 24/86 (27%), Gaps = 22/86 (25%)
Query: 283 TVTWGQSVHLSCFVKLPASMANQPMSWYHYSKD-----------------KGRYQIKFRS 325
GQ++ + C P + W + R+ I
Sbjct: 21 QSVAGQTLTVRCQYP-PTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDP 79
Query: 326 DKFIRTVDGGLVIMAVEELDAGKYDC 351
D TV + + E D+G Y C
Sbjct: 80 DAGFFTVT----MTDLREEDSGHYWC 101
>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor,
two-domain structure, V-SET, C2-SET, IG-like domain,
6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens}
PDB: 2zg3_A* 2zg2_A
Length = 214
Score = 30.2 bits (67), Expect = 0.76
Identities = 12/93 (12%), Positives = 24/93 (25%), Gaps = 20/93 (21%)
Query: 283 TVTWGQSVHLSCFVKLPASMANQP----MSWYHYSKDKGRYQIKFRSDKF---------- 328
TV G V + C P + W+ + ++ ++
Sbjct: 11 TVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGR 70
Query: 329 ------IRTVDGGLVIMAVEELDAGKYDCWLGN 355
++ + L I D G Y +
Sbjct: 71 FRLLGDVQKKNCSLSIGDARMEDTGSYFFRVER 103
>3r0n_A Poliovirus receptor-related protein 2; IG-domain, cell-adhesion
molecule, virus entry receptor, STR genomics,
PSI-biology; 1.30A {Homo sapiens}
Length = 128
Score = 29.2 bits (65), Expect = 0.90
Identities = 17/98 (17%), Positives = 28/98 (28%), Gaps = 29/98 (29%)
Query: 283 TVTWGQSVHLSCFV---------------KLPASMANQPMSWYHYSKDK-------GRYQ 320
G +V L C + + A +Q ++ +H G +
Sbjct: 13 RGQLGGTVELPCHLLPPVPGLYISLVTWQRPDAPANHQNVAAFHPKMGPSFPSPKPGSER 72
Query: 321 IKFRSDKFIRTV-------DGGLVIMAVEELDAGKYDC 351
+ F S K D L + + D G Y C
Sbjct: 73 LSFVSAKQSTGQDTEAELQDATLALHGLTVEDEGNYTC 110
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human
coxsackievirus A21, cryo-electron
microscopy,virus-receptor complex, icosahedral virus;
HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3
b.1.1.4 b.1.1.4 b.1.1.4
Length = 450
Score = 30.6 bits (68), Expect = 0.94
Identities = 11/70 (15%), Positives = 24/70 (34%), Gaps = 6/70 (8%)
Query: 282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAV 341
G+++ L C V+ A AN + +G ++K R + ++
Sbjct: 96 SWQPVGKNLTLRCQVEGGAPRANLTVVLL-----RGEKELK-REPAVGEPAEVTTTVLVR 149
Query: 342 EELDAGKYDC 351
+ + C
Sbjct: 150 RDHHGANFSC 159
>1smo_A Triggering receptor expressed on myeloid cells 1; activating
receptors, TREM-1, innate immune system receptor,
system; HET: TLA; 1.47A {Homo sapiens} SCOP: b.1.1.1
Length = 119
Score = 28.6 bits (64), Expect = 1.2
Identities = 16/114 (14%), Positives = 33/114 (28%), Gaps = 25/114 (21%)
Query: 283 TVTWGQSVHLSCFVKLPASMANQPMSWY--------------------HYSKDKGRYQIK 322
+ GQ++ + C A+ +W + GR ++
Sbjct: 10 ELKEGQTLDVKCDYT-LEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRIILE 68
Query: 323 FRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGNTVLCTHNLTVDAHSNVADAPT 376
D + V ++ ++ D+G Y C + H L V +
Sbjct: 69 DYHDHGLLRVR----MVNLQVEDSGLYQCVIYQPPKEPHMLFDRIRLVVTKGFS 118
>1qfo_A Protein (sialoadhesin); immunoglobulin superfamily, carbohydrate
binding, immune system; HET: SIA GAL GLC; 1.85A {Mus
musculus} SCOP: b.1.1.1 PDB: 1od7_A* 1oda_A* 1od9_A*
1qfp_A 2bve_A* 1url_A*
Length = 119
Score = 28.7 bits (64), Expect = 1.6
Identities = 12/86 (13%), Positives = 26/86 (30%), Gaps = 17/86 (19%)
Query: 283 TVTWGQSVHLSCFVKLPASMANQP---MSWYHYSKDKG--------------RYQIKFRS 325
G + + C PA + WY+ K R++ +
Sbjct: 11 QGLSGSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLVDKRFRGRAEL 70
Query: 326 DKFIRTVDGGLVIMAVEELDAGKYDC 351
+ L++ ++ D+G Y+
Sbjct: 71 MGNMDHKVCNLLLKDLKPEDSGTYNF 96
>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein
receptor, immunoglobulin V domain fold, symmetric dimer;
1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B
2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B
1p6a_B
Length = 126
Score = 28.7 bits (64), Expect = 1.6
Identities = 13/92 (14%), Positives = 24/92 (26%), Gaps = 24/92 (26%)
Query: 283 TVTWGQSVHLSCFVKLPASMANQ-PMSWYH--------------------YSKDKGRYQ- 320
G++ +L C L + W Y +
Sbjct: 16 EKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKG 75
Query: 321 -IKFRSDKFIRTVDGGLVIMAVEELDAGKYDC 351
+ F S+ D + + ++ D G Y C
Sbjct: 76 RVHFTSNDLKSG-DASINVTNLQLSDIGTYQC 106
>1he7_A High affinity nerve growth factor receptor; transferase,
TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP:
b.1.1.4 PDB: 1wwa_X 1www_X
Length = 126
Score = 28.4 bits (63), Expect = 1.7
Identities = 12/89 (13%), Positives = 21/89 (23%), Gaps = 13/89 (14%)
Query: 287 GQSVHLSCFVKLPASMANQP---MSWYHYSK----DKGRYQIKFRSDKFIRTVDGGLVIM 339
+H C +P S+ QP + W + G L +
Sbjct: 12 AVEMHHWC---IPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLN 68
Query: 340 AVEELDAGKYDCWLGN---TVLCTHNLTV 365
++ G Y N +
Sbjct: 69 QPTHVNNGNYTLLAANPFGQASASIMAAF 97
>3kgr_A LAIR-1, hlair1, leukocyte-associated immunoglobulin-like receptor;
IG-like domain, cell membrane, glycoprotein; 1.80A {Homo
sapiens} PDB: 3rp1_A
Length = 106
Score = 28.1 bits (63), Expect = 1.9
Identities = 11/72 (15%), Positives = 20/72 (27%), Gaps = 9/72 (12%)
Query: 282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKG-RYQIKFRSDKFIRTVDGG-LVIM 339
+ G V C + + ++ Y + + I
Sbjct: 18 TVIPLGSHVTFVCRGPVGVQ-------TFRLERESRSTYNDTEDVSQASPSESEARFRID 70
Query: 340 AVEELDAGKYDC 351
+V E +AG Y C
Sbjct: 71 SVSEGNAGPYRC 82
>4ety_A LAIR-1, mlair1, leukocyte-associated immunoglobulin-like receptor;
IG-like domain, extra celluar domain, domain swappin
nysgrc, structural genomics; 1.90A {Mus musculus}
Length = 118
Score = 28.2 bits (63), Expect = 2.0
Identities = 10/70 (14%), Positives = 17/70 (24%), Gaps = 7/70 (10%)
Query: 282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAV 341
++ G V + C Y+ + + + I V
Sbjct: 18 LMISQGTFVTVVCSYSDKH-------DLYNMVRLEKDGSTFMEKSTEPYKTEDEFEIGPV 70
Query: 342 EELDAGKYDC 351
E G Y C
Sbjct: 71 NETITGHYSC 80
>1nko_A Sialic acid binding IG-like lectin 7; immunoglobulin, siglec7,
immune system; 1.45A {Homo sapiens} SCOP: b.1.1.1 PDB:
2g5r_A* 1o7v_A* 2df3_A* 1o7s_A* 2hrl_A*
Length = 132
Score = 28.0 bits (62), Expect = 2.5
Identities = 17/91 (18%), Positives = 25/91 (27%), Gaps = 20/91 (21%)
Query: 283 TVTWGQSVHLSCFVKLPASMANQP----MSWYHYSKDKG----------------RYQIK 322
TV G VH+ C P W+ D + +
Sbjct: 17 TVQEGMCVHVRCSFSYPVDSDTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDR 76
Query: 323 FRSDKFIRTVDGGLVIMAVEELDAGKYDCWL 353
F +T + L I DAG+Y +
Sbjct: 77 FHLLGDPQTKNCTLSIRDARMSDAGRYFFRM 107
>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK
receptor, receptor tyrosine kinase, 3D-domain swapping,
transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB:
1hcf_X
Length = 103
Score = 27.4 bits (61), Expect = 2.7
Identities = 7/64 (10%), Positives = 14/64 (21%), Gaps = 7/64 (10%)
Query: 308 SWYHYSK---DKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGN---TVLCTH 361
W++ + K G L + ++ G Y N
Sbjct: 34 QWFYNGAILNESKYICTKIHVTN-HTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQI 92
Query: 362 NLTV 365
+
Sbjct: 93 SAHF 96
>1q8m_A Triggering receptor expressed on myeloid cells 1; V-type IG-like
domain, immunoglobulin-like, immune system receptor;
HET: GSH; 2.60A {Homo sapiens} SCOP: b.1.1.1
Length = 127
Score = 27.5 bits (61), Expect = 4.0
Identities = 14/91 (15%), Positives = 29/91 (31%), Gaps = 25/91 (27%)
Query: 281 KQTVTWGQSVHLSCFVKLPASMANQPMSW--------------------YHYSKDKGRYQ 320
K + GQ++ + C A+ +W + GR
Sbjct: 13 KYELKEGQTLDVKCDYT-LEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRII 71
Query: 321 IKFRSDKFIRTVDGGLVIMAVEELDAGKYDC 351
++ D + V ++ ++ D+G Y C
Sbjct: 72 LEDYHDHGLLRVR----MVNLQVEDSGLYQC 98
>4alg_A Bromodomain-containing protein 2; signaling protein, inhibitor,
histone, epigenetic reader; HET: 1GH; 1.60A {Homo
sapiens} PDB: 4a9e_A 4a9h_A* 4a9i_A* 4a9j_A* 4a9m_A*
4a9n_A* 4a9o_A* 4a9p_A* 4a9f_A* 4alh_A* 4akn_A* 2yek_A*
2ydw_A* 2yw5_A
Length = 154
Score = 27.8 bits (62), Expect = 4.3
Identities = 10/48 (20%), Positives = 17/48 (35%)
Query: 154 GKFKEQATSTSAWLPVLSSRVPEPRPGQCVNDTETLPDSVLNFIRSHP 201
G +S +P S +PG+ N + L V+ + H
Sbjct: 1 GSSHHHHHHSSGLVPRGSHMSNPKKPGRVTNQLQYLHKVVMKALWKHQ 48
>3nfj_J T cell receptor beta chain; immunoglobulin family, immune system;
2.68A {Homo sapiens} PDB: 3hg1_E
Length = 245
Score = 27.9 bits (62), Expect = 4.8
Identities = 15/84 (17%), Positives = 24/84 (28%), Gaps = 19/84 (22%)
Query: 283 TVTWGQSVHLSCFVKLPASMANQPMSWY-----------HYSKDKGRYQIKFRSDKFIRT 331
G + L C V+ +N + WY YS G+ + +
Sbjct: 12 VQPVGSPLSLECTVE---GTSNPNLYWYRQAAGRGLQLLFYSVGIGQISSEV-PQNLSAS 67
Query: 332 VDGG----LVIMAVEELDAGKYDC 351
L + D+G Y C
Sbjct: 68 RPQDRQFILSSKKLLLSDSGFYLC 91
>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin
superfamily, integrin-binding, cell adhesion protein;
1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A
1vsc_A
Length = 202
Score = 27.4 bits (60), Expect = 6.2
Identities = 12/99 (12%), Positives = 24/99 (24%), Gaps = 14/99 (14%)
Query: 281 KQTVTWGQSVHLSCFVKLPASMANQP-MSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIM 339
+ G SV L+C + P SW ++ L +
Sbjct: 10 RYLAQIGDSVSLTCS----TTGCESPFFSWRTQIDSPLNGKVTNEG------TTSTLTMN 59
Query: 340 AVEELDAGKYDCWLGN---TVLCTHNLTVDAHSNVADAP 375
V + Y C + + + + +
Sbjct: 60 PVSFGNEHSYLCTATCESRKLEKGIQVEIYSFPKDPEIH 98
>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural
plasticity, cell-surface dimerizatio adhesion; HET: NAG
FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4
PDB: 1p53_A*
Length = 265
Score = 27.7 bits (61), Expect = 6.3
Identities = 11/76 (14%), Positives = 14/76 (18%), Gaps = 19/76 (25%)
Query: 282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAV 341
T C N P+ KD + V
Sbjct: 195 WTWPENSQQTPMCQAW-----GN-PLPELKCLKDGTF-------------PLPIGESVTV 235
Query: 342 EELDAGKYDCWLGNTV 357
G Y C +T
Sbjct: 236 TRDLEGTYLCRARSTQ 251
>3pv7_A B7-H6, IG-like domain-containing protein
DKFZP686O24166/DKFZP686I21167; NK cell receptor,
receptor-ligand complex, immune system; HET: NAG; 2.00A
{Homo sapiens} PDB: 3pv6_A*
Length = 248
Score = 27.3 bits (60), Expect = 6.7
Identities = 14/87 (16%), Positives = 30/87 (34%), Gaps = 17/87 (19%)
Query: 282 QTVTWGQSVHLSC--FVKLPASMANQPMSWYHYSKDKGRYQIKF------------RSDK 327
Q +V + C F P ++ + ++W+ S + F +
Sbjct: 13 QITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIV 72
Query: 328 FIRTVDGG---LVIMAVEELDAGKYDC 351
+ G L + ++ +AG+Y C
Sbjct: 73 SPWRLKSGDASLRLPGIQLEEAGEYRC 99
>3d85_D IL-12B, interleukin-12 subunit P40, cytotoxic lymphocyte; FAB,
immune system/cytokine complex; 1.90A {Homo sapiens}
SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 3d87_B* 3duh_A*
1f42_A* 1f45_A* 3hmx_A* 3qwr_A*
Length = 306
Score = 27.8 bits (60), Expect = 7.1
Identities = 18/87 (20%), Positives = 26/87 (29%), Gaps = 17/87 (19%)
Query: 282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAV 341
G+ V L+C + ++W + K L I
Sbjct: 16 YPDAPGEMVVLTC-----DTPEEDGITWTLDQSSEVLGSGKT------------LTIQVK 58
Query: 342 EELDAGKYDCWLGNTVLCTHNLTVDAH 368
E DAG+Y C G VL L +
Sbjct: 59 EFGDAGQYTCHKGGEVLSHSLLLLHKK 85
>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG
superfamily, rossmann fold, metal mediated protein
interf immune system; HET: NAG; 3.30A {Homo sapiens}
SCOP: b.1.1.3 b.1.1.4
Length = 291
Score = 27.5 bits (60), Expect = 7.6
Identities = 20/125 (16%), Positives = 36/125 (28%), Gaps = 28/125 (22%)
Query: 249 TTTLRTVFVKVRLLQDVSNTSDSICESSVGR----------------------LKQTVTW 286
L KV L +V S +C S+ L
Sbjct: 41 ELLLPGNNRKVYELSNVQEDSQPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPV 100
Query: 287 GQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDA 346
G+++ L C V+ A AN + +G ++K R + ++ +
Sbjct: 101 GKNLTLRCQVEGGAPRANLTVVLL-----RGEKELK-REPAVGEPAEVTTTVLVRRDHHG 154
Query: 347 GKYDC 351
+ C
Sbjct: 155 ANFSC 159
>1kgc_D T-cell receptor alpha chain; LC13 clone, immune system; 1.50A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1mi5_D 3kpr_D 3kps_D
3o6f_C 3t0e_C 3pqy_D 2esv_D 3dxa_D 3dx9_A
Length = 206
Score = 27.2 bits (60), Expect = 8.3
Identities = 16/85 (18%), Positives = 22/85 (25%), Gaps = 13/85 (15%)
Query: 283 TVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKG-RYQIKFRS-------DKFIRTVDG 334
+ VHL C + WY +G Y I + D
Sbjct: 10 ESNEEEPVHLPC--NHSTISGTDYIHWYRQLPSQGPEYVIHGLTSNVNNRMASLAIAEDR 67
Query: 335 G---LVIMAVEELDAGKYDCWLGNT 356
L++ DA Y C L
Sbjct: 68 KSSTLILHRATLRDAAVYYCILPLA 92
>4esk_A LAIR-1, mlair1, leukocyte-associated immunoglobulin-like receptor;
IG-like domain, domain swapping, collagen receptor,
structural genomics; 1.76A {Mus musculus}
Length = 102
Score = 25.8 bits (57), Expect = 9.2
Identities = 12/70 (17%), Positives = 22/70 (31%), Gaps = 7/70 (10%)
Query: 282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAV 341
++ G V + C + KD G ++ ++ + + I V
Sbjct: 18 LMISQGTFVTVVCSYSDKH----DLYNMVRLEKD-GSTFMEKSTEPYKTEDE--FEIGPV 70
Query: 342 EELDAGKYDC 351
E G Y C
Sbjct: 71 NETITGHYSC 80
>2ol3_A BM3.3 T-cell receptor alpha-chain; T cell receptor, class I MHC,
H-2KBM8, TCR-PMHC complex, IMM system; HET: NAG; 2.90A
{Mus musculus} SCOP: b.1.1.1
Length = 142
Score = 26.5 bits (59), Expect = 9.5
Identities = 15/89 (16%), Positives = 27/89 (30%), Gaps = 26/89 (29%)
Query: 282 QTVTWGQSVHLSCFVKLPASMANQPMSWY------------------HYSKDKGRYQIKF 323
+V +V + C ++ + WY + G Y + F
Sbjct: 10 ISVMEKTTVTMDC--VYETQDSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNF 67
Query: 324 -RSDKFIRTVDGGLVIMAVEELDAGKYDC 351
+ I L+I A + D+ Y C
Sbjct: 68 QKPKSSIG-----LIITATQIEDSAVYFC 91
>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A
{Homo sapiens}
Length = 184
Score = 26.7 bits (59), Expect = 9.6
Identities = 15/72 (20%), Positives = 21/72 (29%), Gaps = 19/72 (26%)
Query: 282 QTVTWGQSVHLSCFVKLPASMANQPMSWYH-YSKDKGRYQIKFRSDKFIRTVDGGLVIMA 340
V + V L C + Y RYQ + L I A
Sbjct: 17 SLVPLEKPVTLRC-------QGPPGVDLYRLEKLSSSRYQDQAV-----------LFIPA 58
Query: 341 VEELDAGKYDCW 352
++ AG+Y C
Sbjct: 59 MKRSLAGRYRCS 70
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.136 0.418
Gapped
Lambda K H
0.267 0.0413 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,741,547
Number of extensions: 332707
Number of successful extensions: 1309
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1032
Number of HSP's successfully gapped: 361
Length of query: 378
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 283
Effective length of database: 4,049,298
Effective search space: 1145951334
Effective search space used: 1145951334
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 58 (26.9 bits)