Query psy10773
Match_columns 290
No_of_seqs 111 out of 506
Neff 7.7
Searched_HMMs 46136
Date Fri Aug 16 18:07:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10773.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10773hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04734 Ceramidase_alk: Neutr 100.0 3.7E-70 7.9E-75 541.8 22.2 288 1-288 21-495 (674)
2 PTZ00487 ceramidase; Provision 100.0 9.9E-68 2.1E-72 520.9 29.7 287 1-288 59-534 (715)
3 KOG2232|consensus 100.0 4.1E-60 8.9E-65 438.9 20.8 288 1-288 51-552 (734)
4 PF09843 DUF2070: Predicted me 94.8 0.15 3.3E-06 43.3 7.8 56 15-70 59-163 (179)
5 COG3356 Predicted membrane pro 94.7 0.14 3E-06 50.5 8.0 69 1-70 414-533 (578)
6 PF14419 SPOUT_MTase_2: AF2226 23.2 2.3E+02 0.0049 23.8 5.3 52 210-266 68-128 (173)
7 KOG1137|consensus 17.8 87 0.0019 31.4 2.1 41 224-268 320-360 (668)
8 COG1366 SpoIIAA Anti-anti-sigm 17.0 3E+02 0.0064 21.0 4.7 34 220-253 4-38 (117)
9 COG4567 Response regulator con 15.9 1.1E+02 0.0024 25.6 2.0 35 221-269 58-92 (182)
10 PRK12472 hypothetical protein; 13.1 7.9E+02 0.017 24.4 7.2 78 49-135 312-390 (508)
No 1
>PF04734 Ceramidase_alk: Neutral/alkaline non-lysosomal ceramidase; InterPro: IPR006823 This family represents a group of neutral/alkaline ceramidases found in both bacteria and eukaryotes [, , ]. They hydrolyse the sphingolipid ceramide into sphingosine and free fatty acid.; PDB: 2ZXC_A 2ZWS_A.
Probab=100.00 E-value=3.7e-70 Score=541.75 Aligned_cols=288 Identities=57% Similarity=0.909 Sum_probs=200.1
Q ss_pred CCCCCCCCccceeecceEEEEEEEEe--CCceEEEEEEccCcccHHHHHH------------------------------
Q psy10773 1 MGYAKMEQKGVGIHLRLFSRAFIIDD--GERRFVFVSVDSGMIGYNIRAE------------------------------ 48 (290)
Q Consensus 1 ~Gy~~~~~~~~gi~d~L~aRalvl~~--~~~~~~lvs~Dl~~~~~~~~~~------------------------------ 48 (290)
|||+.++++++|||||||||||||++ +++|++||++|++++++.++++
T Consensus 21 ~GYa~~~q~a~GihdrLyARAfVl~~~~~~~rvv~Vs~Dl~~i~~~v~~~V~~~L~~~~g~~y~~~nViIsaTHTHSgPg 100 (674)
T PF04734_consen 21 MGYANRSQVATGIHDRLYARAFVLEDDDGGTRVVFVSLDLLMIPQEVRDEVRERLAAKYGILYDEENVIISATHTHSGPG 100 (674)
T ss_dssp ESS--SS-EEEEESS--EEEEEEEEESSS--EEEEEEESSS---HHHHHHHHHHHHHHSTTT-SGGGEEEEE--BSBEE-
T ss_pred CCCCCCCCCccceecceEEEEEEEEecCCCCEEEEEEeCccccCHHHHHHHHHHHHHhhcCCCChheEEEEeEecCCCCC
Confidence 79999999999999999999999993 5799999999999999876544
Q ss_pred -----------------------------HHHHHHhcCccEEEEEEEEEecCccccCCchhhcCCChhhhccCCCCCCCc
Q psy10773 49 -----------------------------SISRAHNNLQKGRLFVSKGELLDANINRSPTAYLQNPEEERMRYEHDVDKG 99 (290)
Q Consensus 49 -----------------------------ai~~A~~~l~pa~l~~g~~~~~~~~~NR~~~~~~~np~~~~~~~~g~~D~~ 99 (290)
||++|+++|+|++|.++++++.++++||+..+|.+||++++.+|++++||+
T Consensus 101 g~~~~~~~~~~~~gf~~~~~~~lv~gIv~aI~~A~~~L~pa~l~~g~g~~~~a~~NRs~~ay~~NP~~er~~y~g~vD~~ 180 (674)
T PF04734_consen 101 GYSHYLLYNITSGGFDPEYYDALVDGIVEAIEQAHENLQPARLGFGTGELSDANINRSPSAYLRNPAEERARYDGPVDPE 180 (674)
T ss_dssp ---SSHHHHGGGTB--HHHHHHHHHHHHHHHHHHHTT-EEEEEEEEEEE--SSEEETTHHHHTT-T--T-TT-TTS---E
T ss_pred ccccccccccccccchHHHHHHHHHHHHHHHHHHHHhCCcEEEEEeEEEecceeecCCchhhhcCccccccccCCCcCCc
Confidence 899999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEeCCCCceEEEEeeeecccccCCCCceeccCC-------------------cchhhhhhccccCCCCCCCCCCc
Q psy10773 100 MVQLQFISAEDRPLGVINWFAVHPTSMNNTNRLVSSDN-------------------GKFVAAFASTNLGDVSPNIKGPK 160 (290)
Q Consensus 100 v~vl~~~~~~g~~~a~l~nya~HpT~l~~~n~~iS~D~-------------------~~~va~f~~Ga~GD~sP~~~g~~ 160 (290)
|.+|+|++.+|+++|+|+|||||||+|+++|++||+|| ++||++|+||++||+|||..|.+
T Consensus 181 ~~vLrf~~~dG~~ig~L~nfAvHpTsl~~~N~lIS~D~~G~aa~~lE~~~~~~~~~~~~fVaaFaq~n~GDvsPN~~g~~ 260 (674)
T PF04734_consen 181 MTVLRFRDADGKPIGVLNNFAVHPTSLGNTNRLISGDNKGYAAYLLEKELGGDLAGKPPFVAAFAQGNAGDVSPNTLGPF 260 (674)
T ss_dssp EEEEEEEETTS-EEEEEEE----B-SS-TT--SBB-HHHHHHHHHHHHTT------STT-EEEEE-SS-TTEES-SS---
T ss_pred eeEEEEEeCCCCEEEEEEEEcccceeccCCCCeecCCcHhHHHHHHHHhhcccccCCCCeEEEEccCCcccccccccccc
Confidence 99999999999999999999999999999999999999 57899999999999999999999
Q ss_pred cccCCCcccccCCCCCCCCCccccCCCCchhhhhhHHHHHHHHHHhh---------------------------------
Q psy10773 161 CLLTGVDCDIDTSACPKQGDSCVASGPGRDMFESTRLIAERMYRKAL--------------------------------- 207 (290)
Q Consensus 161 ~~~~g~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~--------------------------------- 207 (290)
|+++|.+||+.+|+|+++.+.|...||+.++++++++||++|+++++
T Consensus 261 c~~~g~~c~~~~s~c~~~~~~~~~~Gp~~d~~~s~~iig~rq~~~A~~l~~~~~~~~~g~v~~~~~~vdm~~~~v~~~~~ 340 (674)
T PF04734_consen 261 CEDTGLPCDFEHSTCGGKNELCHGRGPGKDMFESTRIIGERQFDKARELYDSASEELTGPVDSRHQYVDMSNVTVDPPFT 340 (674)
T ss_dssp --------------------SSSTSSSTS-HHHHHHHHHHHHHHHHHHHHHHT-EEE-S-EEEEEEEEE-TT-EE-GGGT
T ss_pred ccccccccccccccccccccccCCCCCCccchHHHHHHHHHHHHHHHHHhhccCcccCCCEeEEEEEEcCCCeEEccCCC
Confidence 99999999999999999999999999999999999999999998877
Q ss_pred ------------------------------------------------------------------------hcCCCCCC
Q psy10773 208 ------------------------------------------------------------------------MNVPHQWQ 215 (290)
Q Consensus 208 ------------------------------------------------------------------------~~~p~~~~ 215 (290)
+..|++|.
T Consensus 341 ~~~~~~~tc~~a~G~sfaAGt~DGpg~~~f~qg~~~~~~~p~w~~v~~~~~~p~~~~~~cq~pKpiLl~~G~~~~p~~w~ 420 (674)
T PF04734_consen 341 GDGKTVRTCPAAMGYSFAAGTEDGPGAFDFTQGDTEVEGNPFWDLVRDFLKKPSPEQVACQAPKPILLPTGEMNFPYPWV 420 (674)
T ss_dssp -TSS-EE-----EE----SSSSSSS-SS---SSS------HHHHHHT-SSS---HHHHHHTTT--EEE--TT--SSS-SS
T ss_pred CCCCcCcccccccccccccccccCCCcccccCCCcccccchHHHHHhhhccCCCHHHHhccCCCcEEEeccccCCCcccC
Confidence 33568999
Q ss_pred CceeEEEEEEECCEEEEeeCCccchHHHHHHHHHHHHHhccC--CCCcEEEEcccCCCCcccCCHHhhccCcccc
Q psy10773 216 PNTVSTQLVRIGHLVLVGVPGELTTMAGRRLRRALQDELGLL--MESDVIIAGLANTYADYVTTPEEYQEIVHMS 288 (290)
Q Consensus 216 ~~~~~v~~l~iG~~~lv~~PgE~~~~~G~~lk~~~~~~s~~~--~~~~~~i~gyaNg~~GYi~t~~~y~~~~YE~ 288 (290)
|..+++|++|||++.|+++|||+++|.|+|||++|++.+... .++.++|+||+|+|.|||+|+|||+.|+||.
T Consensus 421 p~i~~~Qi~riG~l~i~~~P~E~TtmaGrRlr~~v~~~~~~~~~~~~~vvi~g~sN~Y~~YvtT~EEY~~Q~YEg 495 (674)
T PF04734_consen 421 PNIVPIQIVRIGQLVIVAVPGEFTTMAGRRLREAVAEALGAAGIDDPHVVIAGLSNGYSHYVTTPEEYQVQRYEG 495 (674)
T ss_dssp -SEEEEEEEEETTEEEEE-SSEE-HHHHHHHHHHHHHHHGGGT----EEEEE-SBSS---EE--HHHHHH--HHH
T ss_pred CceEEEEEEEEcCEEEEEcCCcchhHHHHHHHHHHHHHHhhcCCCceEEEEEeeccCcccccCCHHHhhcCcccc
Confidence 999999999999999999999999999999999999886322 1468999999999999999999999999996
No 2
>PTZ00487 ceramidase; Provisional
Probab=100.00 E-value=9.9e-68 Score=520.89 Aligned_cols=287 Identities=47% Similarity=0.796 Sum_probs=267.2
Q ss_pred CCCCCCCCccceeecceEEEEEEEEe-CCceEEEEEEccCcccHHHHHH-------------------------------
Q psy10773 1 MGYAKMEQKGVGIHLRLFSRAFIIDD-GERRFVFVSVDSGMIGYNIRAE------------------------------- 48 (290)
Q Consensus 1 ~Gy~~~~~~~~gi~d~L~aRalvl~~-~~~~~~lvs~Dl~~~~~~~~~~------------------------------- 48 (290)
|||+.+.|+++|||||||||||+|++ ++++++||++|++++++.++++
T Consensus 59 ~GYa~~~q~a~GvhdrLyARAfVl~d~~~~rvv~Vs~Dl~~i~~~v~~~V~~~L~~~~Gi~~y~~~NVllsATHTHSGPg 138 (715)
T PTZ00487 59 MGYAMPDQRTKGIHFRQRARAFVFADSPGNRAVYVSTDSCMIFQEVKIGVVPKLQEIFGPDLYTLDNVLLSGTHTHSGPA 138 (715)
T ss_pred cccccCCcCccceecceeEEEEEEEeCCCCEEEEEEEcccCCCHHHHHHHHHHHHHHhCcCcCChhhEEEEeeecCCCCc
Confidence 79999999999999999999999965 7999999999999999977654
Q ss_pred -----------------------------HHHHHHhcCccEEEEEEEEEecCccccCCchhhcCCChhhhccCCCCCCCc
Q psy10773 49 -----------------------------SISRAHNNLQKGRLFVSKGELLDANINRSPTAYLQNPEEERMRYEHDVDKG 99 (290)
Q Consensus 49 -----------------------------ai~~A~~~l~pa~l~~g~~~~~~~~~NR~~~~~~~np~~~~~~~~g~~D~~ 99 (290)
||.+|+++|+|++|.++++++.+.++|||+.+|..||+++++.|++++||+
T Consensus 139 g~~~~~l~~~ts~Gf~~qy~~~lvdgIv~AI~~A~~nL~Pa~l~~g~g~~~~aniNRs~~ay~~NP~~er~~y~g~vD~~ 218 (715)
T PTZ00487 139 GFSFYALYGITTLGFYKKNFDTICEGIVQAIVKAHKSVQPARMYTNSGELWNSNINRSPTAYDNNPEEEKAMYDGNVDKN 218 (715)
T ss_pred ccccccccccccccccHHHHHHHHHHHHHHHHHHHhcCCcEEEEEeeEEeccccccCChhhhhcCchhhccccCCCCCCc
Confidence 999999999999999999999989999999999999999999999999999
Q ss_pred eEEEEEEeCCCCceEEEEeeeecccccCCCCceeccCC------------------c---chhhhhhccccCCCCCCCCC
Q psy10773 100 MVQLQFISAEDRPLGVINWFAVHPTSMNNTNRLVSSDN------------------G---KFVAAFASTNLGDVSPNIKG 158 (290)
Q Consensus 100 v~vl~~~~~~g~~~a~l~nya~HpT~l~~~n~~iS~D~------------------~---~~va~f~~Ga~GD~sP~~~g 158 (290)
|.+|+|++.||+++|+|+|||||||+|+++|++||+|| | +||++|+|||+||+|||..|
T Consensus 219 m~vLrf~~~dGkpig~L~~fA~H~Tsl~~~N~lISgD~~G~Aa~~lEk~~~~~~~~pg~~~FVAaF~qg~~GDvsPn~~g 298 (715)
T PTZ00487 219 MTVLRIEDMNGNPFAAISFFAVHCTSMNNTNHLISGDNKGYASYLWEKYKNGNDSFPGVGPFIAAFGQSNEGDVSPNTRG 298 (715)
T ss_pred eEEEEEEcCCCCEEEEEEEEeecccccCCCCceecCchHHHHHHHHHHHhccCccCCCCCceeEEEccCCcccCCCCCCC
Confidence 99999999999999999999999999999999999999 2 38999999999999999999
Q ss_pred CccccCCCcccccCCCCCCCCCccccCCCCc--hhhhhhHHHHHHHHHHhh-----------------------------
Q psy10773 159 PKCLLTGVDCDIDTSACPKQGDSCVASGPGR--DMFESTRLIAERMYRKAL----------------------------- 207 (290)
Q Consensus 159 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~~~~~~~~~~~~~----------------------------- 207 (290)
.+|++ |..|++.+|+|+++.+.|.++||.. ++++++++||++|+++++
T Consensus 299 ~~c~~-g~~c~~~~stc~g~~~~c~~~GP~~~~d~~~~t~~iG~rq~~~A~~l~~~~~~~l~G~v~~~h~~~dm~~~~v~ 377 (715)
T PTZ00487 299 PTCRD-GIPCDYKTSTCNGTTEECWGLGPGKDGDMFESTQIIGGNQFNKALELFNNASIQVSGPIQYRHTWLNFTNVSVE 377 (715)
T ss_pred Ccccc-CCcccccccccCCcccceeccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCcccccccceEEEEEeccccEec
Confidence 99999 9999999999999999999999976 589999999999988776
Q ss_pred ---------------------------------------------------------------------------hcCCC
Q psy10773 208 ---------------------------------------------------------------------------MNVPH 212 (290)
Q Consensus 208 ---------------------------------------------------------------------------~~~p~ 212 (290)
+..|+
T Consensus 378 ~~~~~~~~~~~tC~aa~G~sfaAGt~DGpg~f~f~qg~~~~~~~p~w~~~~~~~~~p~~~~~~cq~pKpiLl~~G~~~p~ 457 (715)
T PTZ00487 378 PPYNSGVQVATTCRGAMGYSFAAGTTDGPGAFNFKQGDNSTKGNPFWNFIGSFIAKPTPEQILCQSPKPILLDVGMVEPI 457 (715)
T ss_pred cccCCCCCcceecccccCcccccccCCCCCCccccCCCCCcCCCcHHHHHhhhccCCChHHhcccCCCceeecCCCCCCC
Confidence 11246
Q ss_pred CCCCceeEEEEEEECCEEEEeeCCccchHHHHHHHHHHHHHhcc-CCCCcEEEEcccCCCCcccCCHHhhccCcccc
Q psy10773 213 QWQPNTVSTQLVRIGHLVLVGVPGELTTMAGRRLRRALQDELGL-LMESDVIIAGLANTYADYVTTPEEYQEIVHMS 288 (290)
Q Consensus 213 ~~~~~~~~v~~l~iG~~~lv~~PgE~~~~~G~~lk~~~~~~s~~-~~~~~~~i~gyaNg~~GYi~t~~~y~~~~YE~ 288 (290)
+|.|+.+++|++|||++.|+++|||+++|.|+|||++|++.++. ...+.|+|+||||+|.|||+|+|||+.|.||.
T Consensus 458 ~w~p~iv~iQi~riG~l~i~~~P~E~TtmaGrRlr~aV~~~~~~~~~~~~Vvl~G~aN~Y~~YvtT~EEY~~QrYEG 534 (715)
T PTZ00487 458 PWVPDVMPIQIMTIGQIVLVAVPGEFTTMSGRRLRNTVREIIGTSIENPIVLIAGLSNTYSGYIATFEEFQVQRYEG 534 (715)
T ss_pred CCcCceeeeEEEEEeeEEEEecCcccchhHHHHHHHHHHHHhhcCCCCceEEEEecccccccccCCHHHhhhhhhcc
Confidence 89999999999999999999999999999999999999988632 34567999999999999999999999999995
No 3
>KOG2232|consensus
Probab=100.00 E-value=4.1e-60 Score=438.94 Aligned_cols=288 Identities=54% Similarity=0.899 Sum_probs=269.4
Q ss_pred CCCCCCCCccceeecceEEEEEEEEeC-CceEEEEEEccCcccHHHHHH-------------------------------
Q psy10773 1 MGYAKMEQKGVGIHLRLFSRAFIIDDG-ERRFVFVSVDSGMIGYNIRAE------------------------------- 48 (290)
Q Consensus 1 ~Gy~~~~~~~~gi~d~L~aRalvl~~~-~~~~~lvs~Dl~~~~~~~~~~------------------------------- 48 (290)
|||+..+|.+.|||-+|+||||+++++ ++|++||++|.+++.+.++.+
T Consensus 51 MGYan~~QvasGIh~Rl~aRaFIvaep~gnRv~FVs~DagM~sq~lkleVi~RLqarYG~lY~~~NVaiSGtHTHagPgG 130 (734)
T KOG2232|consen 51 MGYANSEQVASGIHFRLRARAFIVAEPQGNRVAFVSLDAGMASQGLKLEVIERLQARYGNLYTEDNVAISGTHTHAGPGG 130 (734)
T ss_pred ccccchhhhhchheeeeeeeeEEEecCCCceEEEEecchhhhhhhhHHHHHHHHHHhhcccccccceeEecccccCCCcc
Confidence 899999999999999999999999885 899999999999999866543
Q ss_pred ----------------------------HHHHHHhcCccEEEEEEEEEecCccccCCchhhcCCChhhhccCCCCCCCce
Q psy10773 49 ----------------------------SISRAHNNLQKGRLFVSKGELLDANINRSPTAYLQNPEEERMRYEHDVDKGM 100 (290)
Q Consensus 49 ----------------------------ai~~A~~~l~pa~l~~g~~~~~~~~~NR~~~~~~~np~~~~~~~~g~~D~~v 100 (290)
+|.+|++||+|.+|...+|++-++++||++.+|.+||..+|.+|+-.+|++|
T Consensus 131 ylqy~~y~vtslGFv~QsF~~mv~Gi~~sI~qAhenlrpG~iflnkg~llda~vNRSPssYL~NPa~ERsky~~d~DKem 210 (734)
T KOG2232|consen 131 YLQYVLYIVTSLGFVRQSFDVMVDGIEQSIIQAHENLRPGSIFLNKGELLDAGVNRSPSSYLNNPAEERSKYEYDVDKEM 210 (734)
T ss_pred eeeeeeeeehhcccchHHHHHHHHHHHHHHHHHHhcCCCCeEEecccceecccccCChhHHhcChHhhhhcCccccCcee
Confidence 9999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCCCceEE---EEeeeecccccC---CCCceec---cCC----------------------------------
Q psy10773 101 VQLQFISAEDRPLGV---INWFAVHPTSMN---NTNRLVS---SDN---------------------------------- 137 (290)
Q Consensus 101 ~vl~~~~~~g~~~a~---l~nya~HpT~l~---~~n~~iS---~D~---------------------------------- 137 (290)
++|||.|.++.|+|. .-||+.|++++. +.|+++| +|+
T Consensus 211 tllkfVD~q~~~~Gar~m~dWf~~h~~~~n~~~n~~r~Vss~isd~~~~a~~Lle~~~~~~~~pG~~v~~~~~~~~rvr~ 290 (734)
T KOG2232|consen 211 TLLKFVDLQWGPLGARFMEDWFEVHNGSMNSSRNSPRRVSSIISDNVGYASLLLEKASNPNSMPGKSVTRSSSVARRVRN 290 (734)
T ss_pred EEEEEEeccCCccchHHHHHHHHhcccccccccCCcceecccccccccHHHHHHHHhhCcccCCCcccccchhhhhhhhc
Confidence 999999998889994 899999999998 7789999 887
Q ss_pred ---cchhhhhhccccCCCCCCCCCCccccCCCcccccCCCCCCCCCccccCCCCc-hhhhhhHHHHHHHHHHhh------
Q psy10773 138 ---GKFVAAFASTNLGDVSPNIKGPKCLLTGVDCDIDTSACPKQGDSCVASGPGR-DMFESTRLIAERMYRKAL------ 207 (290)
Q Consensus 138 ---~~~va~f~~Ga~GD~sP~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~~~~~~~~~~~~~~------ 207 (290)
+.||++|+|.+|||+|||..|.+|.++|.+||+.+|+||++.++|.++||+. |+||++++||+++++.+.
T Consensus 291 ~~k~~FVsAFcqsN~GDVSPNilG~~CidtG~~Cd~~~StC~g~~~~C~~rGPG~pD~FeSTrIiGer~~k~A~eLfnka 370 (734)
T KOG2232|consen 291 ADKGKFVSAFCQSNCGDVSPNILGPFCIDTGLPCDFNHSTCPGGNEMCYGRGPGYPDEFESTRIIGERQFKMALELFNKA 370 (734)
T ss_pred ccccchhhhhhhccCCCCCcccccchhhcCCCccccccCcCCCCCcceeccCCCCcchhhhhhHHhHHHHHHHHHHHHhh
Confidence 4689999999999999999999999999999999999999999999999997 999999999999987765
Q ss_pred --------------------------------------------------------------------------------
Q psy10773 208 -------------------------------------------------------------------------------- 207 (290)
Q Consensus 208 -------------------------------------------------------------------------------- 207 (290)
T Consensus 371 SeevqG~v~~~H~~vD~s~l~vt~n~~~~~se~vktC~~AmGf~FAAGTtDGpGafdF~QG~~~gnpfW~~VRn~l~~P~ 450 (734)
T KOG2232|consen 371 SEEVQGKVDYRHQYVDFSNLNVTLNKLSGKSEVVKTCPAAMGFSFAAGTTDGPGAFDFTQGDDQGNPFWRLVRNVLKTPT 450 (734)
T ss_pred HHHhcCcccceeEeeccccceeEecCcCCCccccccCcccccccccccccCCCCccccccCCcCCChHHHHHHHHHcCCC
Confidence
Q ss_pred ------------------hcCCCCCCCceeEEEEEEECCEEEEeeCCccchHHHHHHHHHHHHHhcc---CCCCcEEEEc
Q psy10773 208 ------------------MNVPHQWQPNTVSTQLVRIGHLVLVGVPGELTTMAGRRLRRALQDELGL---LMESDVIIAG 266 (290)
Q Consensus 208 ------------------~~~p~~~~~~~~~v~~l~iG~~~lv~~PgE~~~~~G~~lk~~~~~~s~~---~~~~~~~i~g 266 (290)
+.+|++|.|..+.+|+||||++.|+++|||+++|.|+|||+++++..+. ..+.+|+|+|
T Consensus 451 ~e~i~Ch~PKPILL~TGemt~PydW~P~Iv~~QilriGql~I~aVPgEFTTMaGRRLR~avka~~~~~g~~~~~~VVIaG 530 (734)
T KOG2232|consen 451 EEQIKCHKPKPILLDTGEMTKPYDWAPSIVSVQILRIGQLVILAVPGEFTTMAGRRLRDAVKAALKSSGNSINMHVVIAG 530 (734)
T ss_pred HHHhcccCCCceEecccccCCCcCCCccccchheeeeccEEEEecCccceehhhHHHHHHHHHHHHhcCCCcceEEEEec
Confidence 4577999999999999999999999999999999999999999988422 2567899999
Q ss_pred ccCCCCcccCCHHhhccCcccc
Q psy10773 267 LANTYADYVTTPEEYQEIVHMS 288 (290)
Q Consensus 267 yaNg~~GYi~t~~~y~~~~YE~ 288 (290)
++|.|..||+|.|||+.|+||.
T Consensus 531 LtN~YsqYi~T~EEYqvQRYE~ 552 (734)
T KOG2232|consen 531 LTNIYSQYITTFEEYQVQRYEG 552 (734)
T ss_pred cccchhhhcccHHHHhHHHhhc
Confidence 9999999999999999999996
No 4
>PF09843 DUF2070: Predicted membrane protein (DUF2070); InterPro: IPR019204 This domain of unknown function is found in various bacterial and archael hypothetical proteins, as well as in prokaryotic polyketide synthase.
Probab=94.77 E-value=0.15 Score=43.34 Aligned_cols=56 Identities=18% Similarity=0.135 Sum_probs=49.2
Q ss_pred cceEEEEEEEEeCCceEEEEEEccCcccHHHHHH----------------------------------------------
Q psy10773 15 LRLFSRAFIIDDGERRFVFVSVDSGMIGYNIRAE---------------------------------------------- 48 (290)
Q Consensus 15 d~L~aRalvl~~~~~~~~lvs~Dl~~~~~~~~~~---------------------------------------------- 48 (290)
.+.-.+|++++.++++.++|.+|.-.|.+.++++
T Consensus 59 g~~gi~~~~v~~~g~~~~lv~~DsNNm~~~lr~~i~~~~~~~~d~~ev~TTDtH~~~~~~~g~~y~~vG~~~~~~~i~~~ 138 (179)
T PF09843_consen 59 GIGGISALVVEVGGQRSALVLADSNNMEPGLREKIREALGDVVDEVEVMTTDTHFVNGESGGNGYWPVGPLIPPREIIES 138 (179)
T ss_pred CccccEEEEEEeCCcEEEEEEEECCCCCHHHHHHHHHHHhhhcceeEEecCcccEEccEECCccceeccccCCHHHHHHH
Confidence 4566899999999999999999999999988766
Q ss_pred ---HHHHHHhcCccEEEEEEEEEec
Q psy10773 49 ---SISRAHNNLQKGRLFVSKGELL 70 (290)
Q Consensus 49 ---ai~~A~~~l~pa~l~~g~~~~~ 70 (290)
++..|.++++|+++++.+..++
T Consensus 139 ~~~~~~~A~~~l~~v~~~~~~~~~~ 163 (179)
T PF09843_consen 139 RREAVSEAERDLEPVEVGYKEVYVK 163 (179)
T ss_pred HHHHHHHHHhcccccEEEEEEEEEE
Confidence 8888999999999988888854
No 5
>COG3356 Predicted membrane protein [Function unknown]
Probab=94.66 E-value=0.14 Score=50.52 Aligned_cols=69 Identities=26% Similarity=0.342 Sum_probs=55.9
Q ss_pred CCCCCCC---CccceeecceEEEEEEEEeCCceEEEEEEccCcccHHHHHH-----------------------------
Q psy10773 1 MGYAKME---QKGVGIHLRLFSRAFIIDDGERRFVFVSVDSGMIGYNIRAE----------------------------- 48 (290)
Q Consensus 1 ~Gy~~~~---~~~~gi~d~L~aRalvl~~~~~~~~lvs~Dl~~~~~~~~~~----------------------------- 48 (290)
+||+..+ ++..|+ -+..+||+++|.|++|.++|.+|.=.+..+++++
T Consensus 414 vG~ar~~~~~~~~~Gl-g~~Gi~a~v~d~g~~Rta~Vl~DsNNi~~~L~~~v~~~v~~lv~~veV~TTDtH~vn~~~~~~ 492 (578)
T COG3356 414 VGYARGKPLVDAEDGL-GPGGIRAAVVDTGDTRTAYVLFDSNNITTELREEVRKAVRDLVSEVEVVTTDTHYVNGRLVLG 492 (578)
T ss_pred ceeeccCCCCCCCCCc-CcCceEEEEEecCCeEEEEEEEeCCCCcHHHHHHHHHHHHhhhcEEEEEecCCceeccccccc
Confidence 4777533 223333 4789999999999999999999999999888766
Q ss_pred -------------------HHHHHHhcCccEEEEEEEEEec
Q psy10773 49 -------------------SISRAHNNLQKGRLFVSKGELL 70 (290)
Q Consensus 49 -------------------ai~~A~~~l~pa~l~~g~~~~~ 70 (290)
++++|.++++|++++..+..+.
T Consensus 493 ~~pvg~r~d~~~I~~~v~~~v~~A~~dle~ve~g~~~v~v~ 533 (578)
T COG3356 493 YNPVGSREDLGEIADEVAKAVEEAEKDLEPVEVGVRTVKVK 533 (578)
T ss_pred cccccccccHHHHHHHHHHHHHHHHhccccceeEEEEEEEE
Confidence 8899999999999888887764
No 6
>PF14419 SPOUT_MTase_2: AF2226-like SPOUT RNA Methylase fused to THUMP
Probab=23.17 E-value=2.3e+02 Score=23.77 Aligned_cols=52 Identities=19% Similarity=0.263 Sum_probs=34.5
Q ss_pred CCCCCCCceeEEEEE--------EECCEEEEeeC-CccchHHHHHHHHHHHHHhccCCCCcEEEEc
Q psy10773 210 VPHQWQPNTVSTQLV--------RIGHLVLVGVP-GELTTMAGRRLRRALQDELGLLMESDVIIAG 266 (290)
Q Consensus 210 ~p~~~~~~~~~v~~l--------~iG~~~lv~~P-gE~~~~~G~~lk~~~~~~s~~~~~~~~~i~g 266 (290)
+.++|.-..+++.++ |-|++.|++-| ||..++..-+|.+.++.. +...+++|
T Consensus 68 ksY~r~v~kvpV~V~DlYQ~vRdR~~~~lIvtdPkG~~is~vk~~L~~~~r~~-----~eV~v~iG 128 (173)
T PF14419_consen 68 KSYGREVRKVPVYVQDLYQVVRDRKGEPLIVTDPKGDPISEVKDKLAEDLRYA-----KEVVVFIG 128 (173)
T ss_pred HhcCCeeeEeeeeHHHHHHHHHhcCCCeEEEECCCCCcHHHHHHHHHHHHhhC-----cEEEEEEE
Confidence 335666556666655 56889999988 899998777776655532 34455545
No 7
>KOG1137|consensus
Probab=17.78 E-value=87 Score=31.43 Aligned_cols=41 Identities=24% Similarity=0.335 Sum_probs=31.3
Q ss_pred EEECCEEEEeeCCccchHHHHHHHHHHHHHhccCCCCcEEEEccc
Q psy10773 224 VRIGHLVLVGVPGELTTMAGRRLRRALQDELGLLMESDVIIAGLA 268 (290)
Q Consensus 224 l~iG~~~lv~~PgE~~~~~G~~lk~~~~~~s~~~~~~~~~i~gya 268 (290)
..+|...+..+||++-+.+.+.+-+.|-.- .+..+++.||+
T Consensus 320 ~D~gP~vv~aspgmlqsglSRelfe~wcsD----~kN~vlipGy~ 360 (668)
T KOG1137|consen 320 DDEGPSVVMASPGMLQSGLSRELFERWCSD----SKNAVLIPGYC 360 (668)
T ss_pred cccCCceeEeCchHhhhhhhHHHHHHhCCC----CCCcEEeccce
Confidence 346778999999999999999987544422 24458898887
No 8
>COG1366 SpoIIAA Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) [Signal transduction mechanisms]
Probab=16.95 E-value=3e+02 Score=20.96 Aligned_cols=34 Identities=21% Similarity=0.326 Sum_probs=27.5
Q ss_pred EEEEEEECCE-EEEeeCCccchHHHHHHHHHHHHH
Q psy10773 220 STQLVRIGHL-VLVGVPGELTTMAGRRLRRALQDE 253 (290)
Q Consensus 220 ~v~~l~iG~~-~lv~~PgE~~~~~G~~lk~~~~~~ 253 (290)
.+.+..+++. .++.+.||+....+..+|+.+.+.
T Consensus 4 ~~~~~~~~~~~~vl~l~G~lD~~~a~~~~e~~~~~ 38 (117)
T COG1366 4 SIPIIKIVDGILVLPLIGELDAARAPALKETLLEV 38 (117)
T ss_pred CCceEEeeceEEEEEeeEEEchHHHHHHHHHHHHH
Confidence 3456677776 699999999999999999887744
No 9
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]
Probab=15.89 E-value=1.1e+02 Score=25.60 Aligned_cols=35 Identities=20% Similarity=0.272 Sum_probs=23.6
Q ss_pred EEEEEECCEEEEeeCCccchHHHHHHHHHHHHHhccCCCCcEEEEcccC
Q psy10773 221 TQLVRIGHLVLVGVPGELTTMAGRRLRRALQDELGLLMESDVIIAGLAN 269 (290)
Q Consensus 221 v~~l~iG~~~lv~~PgE~~~~~G~~lk~~~~~~s~~~~~~~~~i~gyaN 269 (290)
+-=+++|+ ..|+.+-+++.+.- +.-..++++||+|
T Consensus 58 vvDlkL~~------------gsGL~~i~~lr~~~--~d~rivvLTGy~s 92 (182)
T COG4567 58 VVDLKLGD------------GSGLAVIEALRERR--ADMRIVVLTGYAS 92 (182)
T ss_pred EEEeeecC------------CCchHHHHHHHhcC--CcceEEEEecchH
Confidence 44467777 35666666666653 4456899999998
No 10
>PRK12472 hypothetical protein; Provisional
Probab=13.09 E-value=7.9e+02 Score=24.43 Aligned_cols=78 Identities=15% Similarity=0.240 Sum_probs=50.7
Q ss_pred HHHHHHhcCccEEEEEEEEEecCccccCCchhhcCCChhhhccCCCCCCCceEE-EEEEeCCCCceEEEEeeeecccccC
Q psy10773 49 SISRAHNNLQKGRLFVSKGELLDANINRSPTAYLQNPEEERMRYEHDVDKGMVQ-LQFISAEDRPLGVINWFAVHPTSMN 127 (290)
Q Consensus 49 ai~~A~~~l~pa~l~~g~~~~~~~~~NR~~~~~~~np~~~~~~~~g~~D~~v~v-l~~~~~~g~~~a~l~nya~HpT~l~ 127 (290)
+...|...++|+.|.+...+- .+++-|+..- |..+. ....|+.+-+ +.+++. ++|||+-++-|+-.+--+
T Consensus 312 ~a~~a~l~~~pvsi~isr~tq-~lyvr~~t~~----~~~~~---~~~~~~~~e~pvti~~~-~~p~gthvfta~~~~~~~ 382 (508)
T PRK12472 312 AATDAKLALEPVSIYISRATQ-KLYVRRNTHK----PAPDG---GEVFDASIEVPVTIRDP-DRPIGTHVFTAMARNDAG 382 (508)
T ss_pred HHHHHHhhcCCeEEEEEcccc-eEEEecccCC----CCCCC---CccccceeeeeeEecCC-CCCcceEEEEEEccCCCc
Confidence 566677789999999998875 6888886421 21111 1345666654 445554 799999999999877443
Q ss_pred CCCceecc
Q psy10773 128 NTNRLVSS 135 (290)
Q Consensus 128 ~~n~~iS~ 135 (290)
=....+|-
T Consensus 383 l~w~~vt~ 390 (508)
T PRK12472 383 LRWSAVTI 390 (508)
T ss_pred cceEEEec
Confidence 33334443
Done!