Query psy10773
Match_columns 290
No_of_seqs 111 out of 506
Neff 7.7
Searched_HMMs 29240
Date Fri Aug 16 18:08:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10773.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10773hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2zws_A Neutral ceramidase; pri 100.0 1.5E-60 5.3E-65 473.4 27.4 286 1-289 24-463 (646)
2 3zxn_A RSBS, anti-sigma-factor 47.8 46 0.0016 24.8 6.2 33 222-254 6-38 (123)
3 1th8_B Anti-sigma F factor ant 17.5 2.6E+02 0.0091 19.4 6.4 36 219-254 3-38 (116)
4 3t6o_A Sulfate transporter/ant 17.1 2.9E+02 0.01 19.7 6.1 33 221-253 7-42 (121)
5 1h4x_A SPOIIAA, anti-sigma F f 13.3 3.5E+02 0.012 18.9 5.4 32 222-253 4-36 (117)
6 4hyl_A Stage II sporulation pr 11.6 2.5E+02 0.0085 19.8 4.0 35 219-253 4-38 (117)
7 1nnv_A Hypothetical protein HI 10.2 1.2E+02 0.004 22.6 1.6 22 13-34 85-106 (110)
8 4ec7_A VNGF, venom nerve growt 10.2 2.1E+02 0.007 21.4 3.1 26 13-38 79-104 (116)
9 3tgv_A Heme-binding protein HU 10.1 2.9E+02 0.0099 20.9 4.1 26 99-124 15-40 (148)
10 1www_V Beta-NGF, protein (nerv 9.2 2.6E+02 0.0089 21.1 3.3 23 16-38 84-106 (120)
No 1
>2zws_A Neutral ceramidase; prism fold and beta-sandwich fold, hydrolase, lipid metaboli secreted; HET: PLM; 1.40A {Pseudomonas aeruginosa} PDB: 2zxc_A*
Probab=100.00 E-value=1.5e-60 Score=473.40 Aligned_cols=286 Identities=42% Similarity=0.669 Sum_probs=222.9
Q ss_pred CCCCCCCCccceeecceEEEEEEEEeC--CceEEEEEEccCcccHHHHHH------------------------------
Q psy10773 1 MGYAKMEQKGVGIHLRLFSRAFIIDDG--ERRFVFVSVDSGMIGYNIRAE------------------------------ 48 (290)
Q Consensus 1 ~Gy~~~~~~~~gi~d~L~aRalvl~~~--~~~~~lvs~Dl~~~~~~~~~~------------------------------ 48 (290)
|||+.+.++++|||||||||||||+++ ++|++||++|++++++.++++
T Consensus 24 ~GYa~~~q~a~Gihd~L~aRA~vl~d~~~~~rvv~Vs~D~~~~~~~v~~~V~~~L~~~~g~~~~~~nV~isaTHTHSgP~ 103 (646)
T 2zws_A 24 MGYSSLEQKTAGIHMRQWARAFVIEEAASGRRLVYVNTDLGMIFQAVHLKVLARLKAKYPGVYDENNVMLAATHTHSGPG 103 (646)
T ss_dssp ESSCCTTCEEEEESSCCEEEEEEEEESSSCCEEEEEEESSSCCCHHHHHHHHHHHHHHSTTTCCTTTEEEEECCBSBEEC
T ss_pred cCccccCccccceecceEEEEEEEEcCCCCCEEEEEEECcccCCHHHHHHHHHHHHHHhCCCCChhHEEEEeeeeCCCCc
Confidence 699999999999999999999999985 799999999999999976655
Q ss_pred -----------------------------HHHHHHhcCccEEEEEEEEEecCccccCCchhhcCCChhhhccCCCCCCCc
Q psy10773 49 -----------------------------SISRAHNNLQKGRLFVSKGELLDANINRSPTAYLQNPEEERMRYEHDVDKG 99 (290)
Q Consensus 49 -----------------------------ai~~A~~~l~pa~l~~g~~~~~~~~~NR~~~~~~~np~~~~~~~~g~~D~~ 99 (290)
||++|+++|+|++|+|+++++.++++|||+.+|.+|| ++++|++++||+
T Consensus 104 g~~~~~l~~~~~~g~~~~y~~~lv~~iv~AI~~A~~~l~pa~l~~g~g~~~~~~~NRs~~ay~~NP--er~~~~g~vD~~ 181 (646)
T 2zws_A 104 GFSHYAMYNLSVLGFQEKTFNAIVDGIVRSIERAQARLQPGRLFYGSGELRNASRNRSLLSHLKNP--DIAGYEDGIDPQ 181 (646)
T ss_dssp CCCSSHHHHGGGTBCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEECCSSEEESCHHHHTTCS--CCTTCTTSCCCE
T ss_pred ccccccccccccccccHHHHHHHHHHHHHHHHHHHhcCCcEEEEEEEEEeCcceecCChhhhhcCc--cccccCCCCCCc
Confidence 9999999999999999999999999999999999999 788899999999
Q ss_pred eEEEEEEeCCCCceEEEEeeeecccccCCCCceeccCC---------------cchhhhhhccccCCCCCCCC-----CC
Q psy10773 100 MVQLQFISAEDRPLGVINWFAVHPTSMNNTNRLVSSDN---------------GKFVAAFASTNLGDVSPNIK-----GP 159 (290)
Q Consensus 100 v~vl~~~~~~g~~~a~l~nya~HpT~l~~~n~~iS~D~---------------~~~va~f~~Ga~GD~sP~~~-----g~ 159 (290)
|.+|+|++.+|+++|+|+|||||||+|+++|++||+|| ++||++|+|||+||+||++. |+
T Consensus 182 ~~vL~f~~~dg~~ig~l~~fA~HpTsl~~~N~liS~D~~G~a~~~lE~~~~~~~~fva~F~qg~~GDvsP~~~~~~~~Gp 261 (646)
T 2zws_A 182 MSVLSFVDANGELAGAISWFPVHSTSMTNANHLISPDNKGYASYHWEHDVSRKSGFVAAFAQTNAGNLSPNLNLKPGSGP 261 (646)
T ss_dssp EEEEEEEETTCCEEEEEEECCCCBCSSCTTCCEEBCHHHHHHHHHHHHTTCCSTTCEEEEECSSCTTEEECCCCCTTCCT
T ss_pred eEEEEEEeCCCCEEEEEEEEccCceecCCCCCeecCccHHHHHHHHHHHhCCCCCeEEEEeccCcccCCccccccccCCC
Confidence 99999998899999999999999999999999999999 34899999999999999985 21
Q ss_pred cccc------CCC---------------c----ccccCC--CCCC-----------CCCcccc------------CCCCc
Q psy10773 160 KCLL------TGV---------------D----CDIDTS--ACPK-----------QGDSCVA------------SGPGR 189 (290)
Q Consensus 160 ~~~~------~g~---------------~----~~~~~~--~~~~-----------~~~~~~~------------~~p~~ 189 (290)
...+ .|+ . ++.... ..+. ....|.. .+|..
T Consensus 262 ~~~~~e~~~~iG~~~~~~a~~~l~~~~~~l~g~v~~~~~~vdm~~~~v~~~~~~g~~~~tc~~a~g~s~aag~~~dgpg~ 341 (646)
T 2zws_A 262 FDNEFDNTREIGLRQFAKAYEIAGQAQEEVLGELDSRFRFVDFTRLPIRPEFTDGQPRQLCTAAIGTSLAAGSTEDGPGP 341 (646)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHCCEEECSCEEEEEEEEECTTCEECGGGSSSSCEECCCCCEEC-------------
T ss_pred CcccHHHHHHHHHHHHHHHHHHHhhccccccCCcceEEEEecCcceeeecccCCcccceechhhhchhhhcCCcccCCCc
Confidence 1110 110 0 000000 0000 0001110 11211
Q ss_pred hhhhhh-----HHH--------HHHHHHHhh----------hcCCCCCCCceeEEEEEEECCEEEEeeCCccchHHHHHH
Q psy10773 190 DMFEST-----RLI--------AERMYRKAL----------MNVPHQWQPNTVSTQLVRIGHLVLVGVPGELTTMAGRRL 246 (290)
Q Consensus 190 ~~~~~~-----~~~--------~~~~~~~~~----------~~~p~~~~~~~~~v~~l~iG~~~lv~~PgE~~~~~G~~l 246 (290)
..++.. ..+ ... ..+.+ ..+|++|.+..+++|+|||||++|+++|||+|+++|++|
T Consensus 342 ~~f~q~~~~~w~~~~~~l~~~~~~~-~~~cq~~k~ill~~g~~~p~~~~~~~v~vqilriGdl~iv~~PgE~tt~~G~rl 420 (646)
T 2zws_A 342 LGLEEGNNPFLSALGGLLTGVPPQE-LVQCQAEKTILADTGNKKPYPWTPTVLPIQMFRIGQLELLGAPAEFTVMAGVRI 420 (646)
T ss_dssp --CCSSCCHHHHHTTCSCCCCCCHH-HHHHTTTCCEEECCTTCSSSCSSCSEEEEEEEEETTEEEEECSSEECHHHHHHH
T ss_pred cccccccchhhhhhhhhhccccchh-HHhhccCcceecccCCCCCcccccceEEEEEEEECCEEEEecCcHHHHHHHHHH
Confidence 011100 000 011 11111 134578999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCCCcEEEEcccCCCCcccCCHHhhccCccccC
Q psy10773 247 RRALQDELGLLMESDVIIAGLANTYADYVTTPEEYQEIVHMSN 289 (290)
Q Consensus 247 k~~~~~~s~~~~~~~~~i~gyaNg~~GYi~t~~~y~~~~YE~~ 289 (290)
|+++++.++..+.+.++|+||||+|.|||||+|||+.|+||+.
T Consensus 421 r~~~~~~~~~~~~~~v~v~GyaN~y~gYi~T~EeY~~q~YEg~ 463 (646)
T 2zws_A 421 RRAVQAASEAAGIRHVVFNGYANAYASYVTTREEYAAQEYEGG 463 (646)
T ss_dssp HHHHHHHHGGGTCCEEEEECSBSSCCCEECCHHHHHHCCTTTT
T ss_pred HHHHHhhhccCCCceEEEEecCCCCCCccCCHHHHhcCCccce
Confidence 9988776532134578888999999999999999999999974
No 2
>3zxn_A RSBS, anti-sigma-factor antagonist (STAS) domain protei; transcription, gene regulation; 1.90A {Moorella thermoacetica} PDB: 2vy9_A 3ztb_A*
Probab=47.77 E-value=46 Score=24.83 Aligned_cols=33 Identities=9% Similarity=0.271 Sum_probs=27.8
Q ss_pred EEEEECCEEEEeeCCccchHHHHHHHHHHHHHh
Q psy10773 222 QLVRIGHLVLVGVPGELTTMAGRRLRRALQDEL 254 (290)
Q Consensus 222 ~~l~iG~~~lv~~PgE~~~~~G~~lk~~~~~~s 254 (290)
-++++++..++.+.||+...-...+++.+.+..
T Consensus 6 pii~~~~vlvv~l~G~lD~~~a~~l~~~ll~~i 38 (123)
T 3zxn_A 6 PILKVDDYWVVAIEETLHDQSVIQFKEELLHNI 38 (123)
T ss_dssp CEEEETTEEEEECCCCC-CHHHHHHHHHHHHHH
T ss_pred cEEEECCEEEEEEeEeeCHHHHHHHHHHHHHHH
Confidence 468899999999999999999999998876653
No 3
>1th8_B Anti-sigma F factor antagonist; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: c.13.2.1 PDB: 1thn_B* 1tid_B* 1til_B* 1auz_A 1buz_A
Probab=17.51 E-value=2.6e+02 Score=19.40 Aligned_cols=36 Identities=25% Similarity=0.405 Sum_probs=29.1
Q ss_pred eEEEEEEECCEEEEeeCCccchHHHHHHHHHHHHHh
Q psy10773 219 VSTQLVRIGHLVLVGVPGELTTMAGRRLRRALQDEL 254 (290)
Q Consensus 219 ~~v~~l~iG~~~lv~~PgE~~~~~G~~lk~~~~~~s 254 (290)
..+.+-+.++..++.++|+++......+++.+.+..
T Consensus 3 m~~~~~~~~~~~vv~l~G~l~~~~~~~l~~~l~~~~ 38 (116)
T 1th8_B 3 LAIDLEVKQDVLIVRLSGELDHHTAEELREQVTDVL 38 (116)
T ss_dssp EEEEEEEETTEEEEEEEEEESHHHHHHHHHHHHHHH
T ss_pred eEEEEEEECCEEEEEEeeeeccccHHHHHHHHHHHH
Confidence 456666789999999999999888888888776553
No 4
>3t6o_A Sulfate transporter/antisigma-factor antagonist S; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.10A {Planctomyces limnophilus}
Probab=17.06 E-value=2.9e+02 Score=19.71 Aligned_cols=33 Identities=3% Similarity=0.185 Sum_probs=24.7
Q ss_pred EEEEEECCEEEEeeCCcc---chHHHHHHHHHHHHH
Q psy10773 221 TQLVRIGHLVLVGVPGEL---TTMAGRRLRRALQDE 253 (290)
Q Consensus 221 v~~l~iG~~~lv~~PgE~---~~~~G~~lk~~~~~~ 253 (290)
+.+-+.|+..++.+.||+ +......+++.+.+.
T Consensus 7 i~~~~~~~~~vv~l~G~l~~ld~~~~~~l~~~l~~~ 42 (121)
T 3t6o_A 7 IRVTHEAQVTVISFPAVFQRLRETEVEQIASTFLAA 42 (121)
T ss_dssp CEEEEETTEEEEECCGGGSEECHHHHHHHHHHHHHT
T ss_pred eeEEEECCEEEEEEccccccCchhhHHHHHHHHHHH
Confidence 345678999999999998 566666788766543
No 5
>1h4x_A SPOIIAA, anti-sigma F factor antagonist; cell differentiation, crystallography, phosphorylation, sigma factor, sporulation; HET: SEP; 1.16A {Bacillus sphaericus} SCOP: c.13.2.1 PDB: 1h4z_A 1h4y_A
Probab=13.29 E-value=3.5e+02 Score=18.85 Aligned_cols=32 Identities=25% Similarity=0.300 Sum_probs=25.8
Q ss_pred EEE-EECCEEEEeeCCccchHHHHHHHHHHHHH
Q psy10773 222 QLV-RIGHLVLVGVPGELTTMAGRRLRRALQDE 253 (290)
Q Consensus 222 ~~l-~iG~~~lv~~PgE~~~~~G~~lk~~~~~~ 253 (290)
++- +.++..++.++||++......+++.+.+.
T Consensus 4 ~~~~~~~~~~vl~l~G~l~~~~~~~l~~~l~~~ 36 (117)
T 1h4x_A 4 QLEMVTRETVVIRLFGELDHHAVEQIRAKISTA 36 (117)
T ss_dssp EEEEEETTEEEEEEEEEECHHHHHHHHHHHHHH
T ss_pred eEEEeeCCEEEEEEEeEEchhhHHHHHHHHHHH
Confidence 444 68899999999999988877888777654
No 6
>4hyl_A Stage II sporulation protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 1.75A {Haliangium ochraceum}
Probab=11.56 E-value=2.5e+02 Score=19.83 Aligned_cols=35 Identities=17% Similarity=0.225 Sum_probs=28.6
Q ss_pred eEEEEEEECCEEEEeeCCccchHHHHHHHHHHHHH
Q psy10773 219 VSTQLVRIGHLVLVGVPGELTTMAGRRLRRALQDE 253 (290)
Q Consensus 219 ~~v~~l~iG~~~lv~~PgE~~~~~G~~lk~~~~~~ 253 (290)
..+.+-+-|+..++.+.||++......+++.+.+.
T Consensus 4 M~i~~~~~~~~~v~~l~G~ld~~~~~~l~~~l~~~ 38 (117)
T 4hyl_A 4 TDTQIRTEQGIDIITLHGHLDTRSSPAVQAAVLPR 38 (117)
T ss_dssp CEEEEEEETTEEEEEEEEEECSSSHHHHHHHHGGG
T ss_pred cEEEEEEECCEEEEEEEeEEcchhHHHHHHHHHHH
Confidence 35666778999999999999988888888777655
No 7
>1nnv_A Hypothetical protein HI1450; structure 2 function project, S2F, structural genomics, unknown function; NMR {Haemophilus influenzae} SCOP: d.17.7.1
Probab=10.22 E-value=1.2e+02 Score=22.55 Aligned_cols=22 Identities=23% Similarity=0.199 Sum_probs=18.4
Q ss_pred eecceEEEEEEEEeCCceEEEE
Q psy10773 13 IHLRLFSRAFIIDDGERRFVFV 34 (290)
Q Consensus 13 i~d~L~aRalvl~~~~~~~~lv 34 (290)
..|++|||.|+-.+.+.+++-|
T Consensus 85 ~iddvFAR~LisR~~~~kfcHI 106 (110)
T 1nnv_A 85 EMDDVFAKFLISHREEDREFHV 106 (110)
T ss_dssp CCSCEEEEEEECSSSSSCCEEE
T ss_pred hHHHHHHHHHhccCcCCCccee
Confidence 6889999999988888877654
No 8
>4ec7_A VNGF, venom nerve growth factor; cobra NGF, unknown lipid, hormone; HET: L44; 2.60A {Naja atra}
Probab=10.21 E-value=2.1e+02 Score=21.43 Aligned_cols=26 Identities=12% Similarity=0.437 Sum_probs=18.1
Q ss_pred eecceEEEEEEEEeCCceEEEEEEcc
Q psy10773 13 IHLRLFSRAFIIDDGERRFVFVSVDS 38 (290)
Q Consensus 13 i~d~L~aRalvl~~~~~~~~lvs~Dl 38 (290)
.--.-|+|||+.+++....-||.+|.
T Consensus 79 ~~k~s~vrAlt~~~~~~~w~~IrI~t 104 (116)
T 4ec7_A 79 TETDTFIKALTMEGNQASWRFIRIET 104 (116)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred EeeEeEEEEEEEeCCcccceEEEeCC
Confidence 34457999999987655555666664
No 9
>3tgv_A Heme-binding protein HUTZ; 2.00A {Vibrio cholerae}
Probab=10.13 E-value=2.9e+02 Score=20.87 Aligned_cols=26 Identities=23% Similarity=0.229 Sum_probs=20.5
Q ss_pred ceEEEEEEeCCCCceEEEEeeeeccc
Q psy10773 99 GMVQLQFISAEDRPLGVINWFAVHPT 124 (290)
Q Consensus 99 ~v~vl~~~~~~g~~~a~l~nya~HpT 124 (290)
...+|.-.+.||.|-+..++|+.+.-
T Consensus 15 ~~~~LaT~~~~G~P~~s~v~~~~~~~ 40 (148)
T 3tgv_A 15 KTLQLATVDAQGRPNVSYAPFVQNQE 40 (148)
T ss_dssp CEEEEEEECTTCCEEEEEEEEEEETT
T ss_pred CEEEEEEECCCCCEEEEEEEEEEECC
Confidence 44566666789999999999998764
No 10
>1www_V Beta-NGF, protein (nerve growth factor); complex, cysteine knot, immunoglobulin like domain; 2.20A {Homo sapiens} SCOP: g.17.1.3 PDB: 1sg1_A 2ifg_E* 1sgf_B* 1btg_A 1bet_A
Probab=9.19 E-value=2.6e+02 Score=21.06 Aligned_cols=23 Identities=22% Similarity=0.570 Sum_probs=17.8
Q ss_pred ceEEEEEEEEeCCceEEEEEEcc
Q psy10773 16 RLFSRAFIIDDGERRFVFVSVDS 38 (290)
Q Consensus 16 ~L~aRalvl~~~~~~~~lvs~Dl 38 (290)
.-|+|||+.+++...-=||.+|.
T Consensus 84 ~t~VrAlt~~~~~~~Wr~IrI~t 106 (120)
T 1www_V 84 HTFVKALTMDGKQAAWRFIRIDT 106 (120)
T ss_dssp EEEEEEEEECSSSEEEEEEEEEE
T ss_pred EEEEEEEEEeCCceeeEEEEECC
Confidence 47999999988766666777775
Done!