Query psy10773
Match_columns 290
No_of_seqs 111 out of 506
Neff 7.7
Searched_HMMs 13730
Date Fri Aug 16 18:08:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10773.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/10773hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1vc1a_ c.13.2.1 (A:) Anti-sig 46.3 17 0.0012 24.5 5.3 46 219-264 4-49 (110)
2 d1th8b_ c.13.2.1 (B:) Anti-sig 33.5 56 0.004 21.7 6.5 36 219-254 2-37 (115)
3 d1c1da2 c.58.1.1 (A:1-148) Phe 19.4 52 0.0038 23.9 4.0 31 95-129 7-37 (148)
4 d1vl7a_ b.45.1.1 (A:) Hypothet 16.9 69 0.005 22.0 4.2 25 99-123 9-33 (135)
5 d1yx0a1 d.108.1.1 (A:1-151) Hy 12.1 1.1E+02 0.0082 21.6 4.3 27 96-123 42-68 (151)
6 d1beta_ g.17.1.3 (A:) beta-Ner 11.4 96 0.007 21.2 3.3 24 15-38 74-97 (107)
7 d1w9aa_ b.45.1.1 (A:) Hypothet 11.1 1.2E+02 0.0087 20.9 4.0 26 98-123 12-37 (142)
8 d1kyqa2 e.37.1.1 (A:151-273) B 10.3 2.1E+02 0.015 19.7 5.0 33 222-254 2-35 (123)
9 d1kwga1 b.71.1.1 (A:591-644) A 10.2 1E+02 0.0073 18.3 2.7 23 103-127 8-30 (54)
10 d2bs2a3 d.168.1.1 (A:251-371) 10.0 41 0.003 23.6 0.9 15 120-134 5-19 (121)
No 1
>d1vc1a_ c.13.2.1 (A:) Anti-sigma factor antagonist SpoIIaa {Thermotoga maritima [TaxId: 2336]}
Probab=46.31 E-value=17 Score=24.50 Aligned_cols=46 Identities=13% Similarity=0.339 Sum_probs=34.7
Q ss_pred eEEEEEEECCEEEEeeCCccchHHHHHHHHHHHHHhccCCCCcEEE
Q psy10773 219 VSTQLVRIGHLVLVGVPGELTTMAGRRLRRALQDELGLLMESDVII 264 (290)
Q Consensus 219 ~~v~~l~iG~~~lv~~PgE~~~~~G~~lk~~~~~~s~~~~~~~~~i 264 (290)
.++.+.+-++..++.+.||++.....++++.+.+....++.+.+++
T Consensus 4 ~~~~~~~~~~~~vv~l~G~l~~~~~~~~~~~l~~~~~~~~~~~vvi 49 (110)
T d1vc1a_ 4 LKLDIVEQDDKAIVRVQGDIDAYNSSELKEQLRNFISTTSKKKIVL 49 (110)
T ss_dssp CEEEEEEETTEEEEEEESCBSTTTHHHHHHHHHHHHHHCCCSEEEE
T ss_pred cEEEEEEECCEEEEEEEEEEEhHHHHHHHHHHHHHHhcCCCCEEEE
Confidence 5688889999999999999999888899888775421123345555
No 2
>d1th8b_ c.13.2.1 (B:) Anti-sigma factor antagonist SpoIIaa {Bacillus stearothermophilus [TaxId: 1422]}
Probab=33.47 E-value=56 Score=21.69 Aligned_cols=36 Identities=25% Similarity=0.405 Sum_probs=30.4
Q ss_pred eEEEEEEECCEEEEeeCCccchHHHHHHHHHHHHHh
Q psy10773 219 VSTQLVRIGHLVLVGVPGELTTMAGRRLRRALQDEL 254 (290)
Q Consensus 219 ~~v~~l~iG~~~lv~~PgE~~~~~G~~lk~~~~~~s 254 (290)
+.+++-.-+++.++.+.|+++......+++.+.+..
T Consensus 2 l~i~~~~~~~v~vv~l~G~L~~~~~~~~~~~l~~~~ 37 (115)
T d1th8b_ 2 LAIDLEVKQDVLIVRLSGELDHHTAEELREQVTDVL 37 (115)
T ss_dssp EEEEEEEETTEEEEEEEEEESHHHHHHHHHHHHHHH
T ss_pred ceEEEEEECCEEEEEEEEEEEHHHHHHHHHHHHHHH
Confidence 456777788999999999999999999998887653
No 3
>d1c1da2 c.58.1.1 (A:1-148) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}
Probab=19.39 E-value=52 Score=23.95 Aligned_cols=31 Identities=16% Similarity=0.177 Sum_probs=20.7
Q ss_pred CCCCceEEEEEEeCCCCceEEEEeeeecccccCCC
Q psy10773 95 DVDKGMVQLQFISAEDRPLGVINWFAVHPTSMNNT 129 (290)
Q Consensus 95 ~~D~~v~vl~~~~~~g~~~a~l~nya~HpT~l~~~ 129 (290)
..|+|..+...+... |+-...|+|.|.+++.
T Consensus 7 ~~d~E~v~~~~d~~t----Gl~~iiaIH~t~lGPa 37 (148)
T d1c1da2 7 NWDGEMTVTRFDAMT----GAHFVIRLDSTQLGPA 37 (148)
T ss_dssp CCCSSEEEEEEETTT----TEEEEEEEEECSSSSE
T ss_pred cCCCeEEEEEECCCc----CCEEEEEEeCCCCCCC
Confidence 457877777664333 3444449999999875
No 4
>d1vl7a_ b.45.1.1 (A:) Hypothetical protein Alr5027 {Cyanobacterium (Nostoc sp. PCC 7120) [TaxId: 103690]}
Probab=16.88 E-value=69 Score=21.96 Aligned_cols=25 Identities=20% Similarity=0.219 Sum_probs=21.1
Q ss_pred ceEEEEEEeCCCCceEEEEeeeecc
Q psy10773 99 GMVQLQFISAEDRPLGVINWFAVHP 123 (290)
Q Consensus 99 ~v~vl~~~~~~g~~~a~l~nya~Hp 123 (290)
...+|.-.++||.|.+..++|+.|.
T Consensus 9 ~~~~LaTv~~dG~P~~s~v~y~~~~ 33 (135)
T d1vl7a_ 9 QSAIISTISEQGIPNGSYAPFVIDD 33 (135)
T ss_dssp SEEEEEEECTTSCEEEEEEEEEECT
T ss_pred CEEEEEEeCCCCCEEEEEEEEEEcC
Confidence 5567777788999999999999975
No 5
>d1yx0a1 d.108.1.1 (A:1-151) Hypothetical protein YsnE {Bacillus subtilis [TaxId: 1423]}
Probab=12.12 E-value=1.1e+02 Score=21.58 Aligned_cols=27 Identities=7% Similarity=-0.082 Sum_probs=18.5
Q ss_pred CCCceEEEEEEeCCCCceEEEEeeeecc
Q psy10773 96 VDKGMVQLQFISAEDRPLGVINWFAVHP 123 (290)
Q Consensus 96 ~D~~v~vl~~~~~~g~~~a~l~nya~Hp 123 (290)
-+|+..++-+++ +|+++|.....-..+
T Consensus 42 ~~~~~~~~va~~-~~~~vG~~~~~~~~~ 68 (151)
T d1yx0a1 42 RGPEITFWSAWE-GDELAGCGALKELDT 68 (151)
T ss_dssp SSSSCEEEEEEC-SSSEEEEEEEEEEET
T ss_pred cCCCeEEEEEEE-CCEEEEEEEEEeccC
Confidence 456777777765 689999876544443
No 6
>d1beta_ g.17.1.3 (A:) beta-Nerve growth factor {Mouse (Mus musculus) [TaxId: 10090]}
Probab=11.36 E-value=96 Score=21.20 Aligned_cols=24 Identities=21% Similarity=0.522 Sum_probs=18.3
Q ss_pred cceEEEEEEEEeCCceEEEEEEcc
Q psy10773 15 LRLFSRAFIIDDGERRFVFVSVDS 38 (290)
Q Consensus 15 d~L~aRalvl~~~~~~~~lvs~Dl 38 (290)
-.-|+|||+.+++...--||.+|.
T Consensus 74 ~~t~VrAlt~~~~~~~Wr~IrI~t 97 (107)
T d1beta_ 74 THTFVKALTTDEKQAAWRFIRIDT 97 (107)
T ss_dssp EEEEEEEEEECSSCEEEEEEEEEE
T ss_pred cEEEEEEEEEcCCceeeEEEEECC
Confidence 347999999987666666777775
No 7
>d1w9aa_ b.45.1.1 (A:) Hypothetical protein Rv1155 {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=11.06 E-value=1.2e+02 Score=20.91 Aligned_cols=26 Identities=19% Similarity=0.215 Sum_probs=21.9
Q ss_pred CceEEEEEEeCCCCceEEEEeeeecc
Q psy10773 98 KGMVQLQFISAEDRPLGVINWFAVHP 123 (290)
Q Consensus 98 ~~v~vl~~~~~~g~~~a~l~nya~Hp 123 (290)
+.+.+|.-.+.||.|.+..+||..+.
T Consensus 12 ~~~~~LaTv~~dG~P~~~pv~~~~~~ 37 (142)
T d1w9aa_ 12 NSIGVLATIKHDGRPQLSNVQYHFDP 37 (142)
T ss_dssp CSEEEEEEECTTSCEEEEEEECEEET
T ss_pred CCeEEEEEECCCCCeEEEeeeeeeec
Confidence 46778887788999999999998754
No 8
>d1kyqa2 e.37.1.1 (A:151-273) Bifunctional dehydrogenase/ferrochelatase Met8p, dimerisation and C-terminal domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=10.32 E-value=2.1e+02 Score=19.74 Aligned_cols=33 Identities=18% Similarity=0.290 Sum_probs=24.5
Q ss_pred EEEEECC-EEEEeeCCccchHHHHHHHHHHHHHh
Q psy10773 222 QLVRIGH-LVLVGVPGELTTMAGRRLRRALQDEL 254 (290)
Q Consensus 222 ~~l~iG~-~~lv~~PgE~~~~~G~~lk~~~~~~s 254 (290)
..++.|| +.|.-.-+=-...+..+||+.+.+..
T Consensus 2 a~~~~GDpLqIaIST~G~sP~LA~~iR~~Ie~~l 35 (123)
T d1kyqa2 2 ANLEIGDRLQILISTNGLSPRFGALVRDEIRNLF 35 (123)
T ss_dssp EEEEETTTEEEEEEESSSCHHHHHHHHHHHHHHH
T ss_pred CccccCCCeEEEeeCCCccHHHHHHHHHHHHHHC
Confidence 3678898 87766666667788999998776653
No 9
>d1kwga1 b.71.1.1 (A:591-644) A4 beta-galactosidase {Thermus thermophilus [TaxId: 274]}
Probab=10.24 E-value=1e+02 Score=18.33 Aligned_cols=23 Identities=4% Similarity=-0.057 Sum_probs=17.6
Q ss_pred EEEEeCCCCceEEEEeeeecccccC
Q psy10773 103 LQFISAEDRPLGVINWFAVHPTSMN 127 (290)
Q Consensus 103 l~~~~~~g~~~a~l~nya~HpT~l~ 127 (290)
||+++. |. +...+||+.++.++.
T Consensus 8 lRvrrR-G~-l~fafNYg~~~~~i~ 30 (54)
T d1kwga1 8 LRLRRR-GT-WVFAFNYGPEAVEAP 30 (54)
T ss_dssp EEEEEE-TT-EEEEEECSSSCEECC
T ss_pred eEEEEE-CC-EEEEEecCCCcEEee
Confidence 566665 33 588999999999875
No 10
>d2bs2a3 d.168.1.1 (A:251-371) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}
Probab=10.01 E-value=41 Score=23.62 Aligned_cols=15 Identities=27% Similarity=0.490 Sum_probs=11.6
Q ss_pred eecccccCCCCceec
Q psy10773 120 AVHPTSMNNTNRLVS 134 (290)
Q Consensus 120 a~HpT~l~~~n~~iS 134 (290)
--|||++.....|||
T Consensus 5 QfHPT~l~~~~~Lit 19 (121)
T d2bs2a3 5 QFHPTPLFPSGILLT 19 (121)
T ss_dssp EEESCBBTTTCCBCC
T ss_pred eeECCccCCCCceec
Confidence 469999987766666
Done!