RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy10773
         (290 letters)



>gnl|CDD|218235 pfam04734, Ceramidase_alk, Neutral/alkaline non-lysosomal
           ceramidase.  This family represents a group of
           neutral/alkaline ceramidases found in both bacteria and
           eukaryotes.
          Length = 672

 Score =  265 bits (679), Expect = 4e-84
 Identities = 93/179 (51%), Positives = 113/179 (63%), Gaps = 19/179 (10%)

Query: 48  ESISRAHNNLQKGRLFVSKGELLDANINRSPTAYLQNPEEERMRYEHDVDKGMVQLQFIS 107
            SI RAH +LQ GRL V KGELLDANINRSP+AYL NPEEER RY  +VDK M  L+F+ 
Sbjct: 129 LSIVRAHESLQPGRLSVGKGELLDANINRSPSAYLANPEEERARYPDNVDKTMTLLKFVR 188

Query: 108 AEDRPLGVINWFAVHPTSMNNTNRLVSSDN-------------------GKFVAAFASTN 148
           ++ +P+G INWFAVH TSMNNTN L+S DN                   G FVAAFA +N
Sbjct: 189 SDGKPVGAINWFAVHGTSMNNTNTLISGDNKGYAAYLFEKAVGGDLPGAGGFVAAFAQSN 248

Query: 149 LGDVSPNIKGPKCLLTGVDCDIDTSACPKQGDSCVASGPGRDMFESTRLIAERMYRKAL 207
           +GDVSPN+ G  C      C  ++S C  + ++C   GPG D FESTR+I  R +  A 
Sbjct: 249 VGDVSPNVLGAWCEDGSGPCCFNSSTCGGKSEACHGRGPGDDEFESTRIIGRRQFAAAK 307



 Score =  126 bits (320), Expect = 6e-33
 Identities = 46/76 (60%), Positives = 53/76 (69%), Gaps = 1/76 (1%)

Query: 208 MNVPHQWQPNTVSTQLVRIGHLVLVGVPGELTTMAGRRLRRALQDELGL-LMESDVIIAG 266
           M  P+ W PN V  QL+RIG L +V VPGE TTMAGRRLR A+   LG   ++  V+IAG
Sbjct: 413 MTFPYPWVPNIVPVQLLRIGQLAIVAVPGEFTTMAGRRLREAVAAALGAAGIKPHVVIAG 472

Query: 267 LANTYADYVTTPEEYQ 282
           LAN YA YVTTPEEY 
Sbjct: 473 LANAYAHYVTTPEEYA 488



 Score = 80.0 bits (198), Expect = 9e-17
 Identities = 26/54 (48%), Positives = 34/54 (62%), Gaps = 2/54 (3%)

Query: 1  MGYAKMEQKGVGIHLRLFSRAFII--DDGERRFVFVSVDSGMIGYNIRAESISR 52
          MGYA ++Q G GIH RL+SRAFI+  +   +R VFV  D GMI   +R   + R
Sbjct: 21 MGYANLDQVGTGIHQRLYSRAFIVADEPNGKRVVFVVADLGMIFQAVRLGVLER 74


>gnl|CDD|240437 PTZ00487, PTZ00487, ceramidase; Provisional.
          Length = 715

 Score =  190 bits (484), Expect = 1e-55
 Identities = 102/291 (35%), Positives = 135/291 (46%), Gaps = 85/291 (29%)

Query: 1   MGYAKMEQKGVGIHLRLFSRAFIIDDGER-RFVFVSVD---------------------- 37
           MGYA  +Q+  GIH R  +RAF+  D    R V+VS D                      
Sbjct: 59  MGYAMPDQRTKGIHFRQRARAFVFADSPGNRAVYVSTDSCMIFQEVKIGVVPKLQEIFGP 118

Query: 38  ----------------SGMIGYNIRA----------------------ESISRAHNNLQK 59
                           SG  G++  A                      ++I +AH ++Q 
Sbjct: 119 DLYTLDNVLLSGTHTHSGPAGFSFYALYGITTLGFYKKNFDTICEGIVQAIVKAHKSVQP 178

Query: 60  GRLFVSKGELLDANINRSPTAYLQNPEEERMRYEHDVDKGMVQLQFISAEDRPLGVINWF 119
            R++ + GEL ++NINRSPTAY  NPEEE+  Y+ +VDK M  L+       P   I++F
Sbjct: 179 ARMYTNSGELWNSNINRSPTAYDNNPEEEKAMYDGNVDKNMTVLRIEDMNGNPFAAISFF 238

Query: 120 AVHPTSMNNTNRLVSSDN---------------------GKFVAAFASTNLGDVSPNIKG 158
           AVH TSMNNTN L+S DN                     G F+AAF  +N GDVSPN +G
Sbjct: 239 AVHCTSMNNTNHLISGDNKGYASYLWEKYKNGNDSFPGVGPFIAAFGQSNEGDVSPNTRG 298

Query: 159 PKCLLTGVDCDIDTSACPKQGDSCVASGPGR--DMFESTRLIAERMYRKAL 207
           P C   G+ CD  TS C    + C   GPG+  DMFEST++I    + KAL
Sbjct: 299 PTC-RDGIPCDYKTSTCNGTTEECWGLGPGKDGDMFESTQIIGGNQFNKAL 348



 Score = 83.4 bits (206), Expect = 6e-18
 Identities = 37/76 (48%), Positives = 54/76 (71%), Gaps = 1/76 (1%)

Query: 208 MNVPHQWQPNTVSTQLVRIGHLVLVGVPGELTTMAGRRLRRALQDELGLLMESD-VIIAG 266
           M  P  W P+ +  Q++ IG +VLV VPGE TTM+GRRLR  +++ +G  +E+  V+IAG
Sbjct: 453 MVEPIPWVPDVMPIQIMTIGQIVLVAVPGEFTTMSGRRLRNTVREIIGTSIENPIVLIAG 512

Query: 267 LANTYADYVTTPEEYQ 282
           L+NTY+ Y+ T EE+Q
Sbjct: 513 LSNTYSGYIATFEEFQ 528


>gnl|CDD|226947 COG4581, COG4581, Superfamily II RNA helicase [DNA replication,
           recombination, and repair].
          Length = 1041

 Score = 29.3 bits (66), Expect = 2.7
 Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 8/47 (17%)

Query: 235 PGELTTMAGRRLRRALQDELG--LLMESDVII-----AGLANTYADY 274
           PGE T M+GR  RR L D LG  +++E          AGLA+   D 
Sbjct: 509 PGEYTQMSGRAGRRGL-DVLGTVIVIEPPFESEPSEAAGLASGKLDP 554


>gnl|CDD|177972 PLN02338, PLN02338, 3-phosphoshikimate 1-carboxyvinyltransferase.
          Length = 443

 Score = 27.4 bits (61), Expect = 8.9
 Identities = 19/81 (23%), Positives = 27/81 (33%), Gaps = 18/81 (22%)

Query: 86  EEERMRYEHDVDKGMVQLQFISAEDRPLGVI-----NWFAVHPTSMNNTNRLVSSDNGKF 140
           E ERM               I  E R LG       ++  + P        + + D+ + 
Sbjct: 358 ETERMIA-------------ICTELRKLGATVEEGPDYCIITPPKKLKPAEIDTYDDHRM 404

Query: 141 VAAFASTNLGDVSPNIKGPKC 161
             AF+    GDV   I  P C
Sbjct: 405 AMAFSLAACGDVPVTINDPGC 425


>gnl|CDD|183518 PRK12418, PRK12418, cysteinyl-tRNA synthetase; Provisional.
          Length = 384

 Score = 27.6 bits (62), Expect = 9.1
 Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 6/40 (15%)

Query: 27  GERRFVFVSVDSGMIGYNIRAESISRAHNNLQKGRLFVSK 66
           GERRF    V +GMIG +   E +S++  NL    +FVS+
Sbjct: 241 GERRFARHYVHAGMIGLD--GEKMSKSRGNL----VFVSR 274


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.319    0.135    0.396 

Gapped
Lambda     K      H
   0.267   0.0733    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 14,969,187
Number of extensions: 1436517
Number of successful extensions: 1177
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1169
Number of HSP's successfully gapped: 16
Length of query: 290
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 194
Effective length of database: 6,679,618
Effective search space: 1295845892
Effective search space used: 1295845892
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.1 bits)