RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10773
         (290 letters)



>d1ad3a_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH {Rat
           (Rattus norvegicus) [TaxId: 10116]}
          Length = 446

 Score = 28.4 bits (62), Expect = 1.2
 Identities = 19/91 (20%), Positives = 28/91 (30%), Gaps = 7/91 (7%)

Query: 134 SSDNGKFVAAFASTN-------LGDVSPNIKGPKCLLTGVDCDIDTSACPKQGDSCVASG 186
           S+  GK V A A+ +       LG  SP      C L      I        G +CVA  
Sbjct: 187 STAVGKIVMAAAAKHLTPVTLELGGKSPCYVDKDCDLDVACRRIAWGKFMNSGQTCVAPD 246

Query: 187 PGRDMFESTRLIAERMYRKALMNVPHQWQPN 217
                      I E++ +          + +
Sbjct: 247 YILCDPSIQNQIVEKLKKSLKDFYGEDAKQS 277


>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI
           {Rhodobacter capsulatus [TaxId: 1061]}
          Length = 333

 Score = 28.0 bits (61), Expect = 1.4
 Identities = 8/26 (30%), Positives = 12/26 (46%)

Query: 225 RIGHLVLVGVPGELTTMAGRRLRRAL 250
            IG +++ G  G   + A R L   L
Sbjct: 27  GIGGVLVFGDRGTGKSTAVRALAALL 52


>d1g94a1 b.71.1.1 (A:355-448) Bacterial alpha-Amylase
           {Pseudoalteromonas haloplanktis (Alteromonas
           haloplanktis) [TaxId: 228]}
          Length = 94

 Score = 25.5 bits (56), Expect = 3.4
 Identities = 9/54 (16%), Positives = 18/54 (33%), Gaps = 7/54 (12%)

Query: 136 DNGKFVAAFASTNLGDVSPNIKG-------PKCLLTGVDCDIDTSACPKQGDSC 182
           DN     +F   + G ++ N +           + +G  C++          SC
Sbjct: 9   DNTNNQISFGRGSSGHMAINKEDSTLTATVQTDMASGQYCNVLKGELSADAKSC 62


>d1tp9a1 c.47.1.10 (A:1-162) Plant peroxiredoxin {Western balsam
           poplar(Populus trichocarpa) [TaxId: 3694]}
          Length = 162

 Score = 25.6 bits (55), Expect = 5.8
 Identities = 5/35 (14%), Positives = 15/35 (42%)

Query: 3   YAKMEQKGVGIHLRLFSRAFIIDDGERRFVFVSVD 37
             +++ +  G+  R    A ++DD + +   +   
Sbjct: 113 GLELDLQEKGLGTRSRRFALLVDDLKVKAANIEGG 147


>d1hd2a_ c.47.1.10 (A:) Peroxiredoxin 5 {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 161

 Score = 25.3 bits (54), Expect = 6.8
 Identities = 9/42 (21%), Positives = 17/42 (40%), Gaps = 3/42 (7%)

Query: 10  GVGIHLRLFSRAFIIDDGERRFVFVSVDSGMIGYNIR-AESI 50
            +  + RL   + ++ DG  + + V  D    G     A +I
Sbjct: 118 SIFGNRRLKRFSMVVQDGIVKALNVEPDGT--GLTCSLAPNI 157


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.135    0.396 

Gapped
Lambda     K      H
   0.267   0.0564    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,067,373
Number of extensions: 48008
Number of successful extensions: 130
Number of sequences better than 10.0: 1
Number of HSP's gapped: 130
Number of HSP's successfully gapped: 8
Length of query: 290
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 206
Effective length of database: 1,254,276
Effective search space: 258380856
Effective search space used: 258380856
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.2 bits)