BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10774
(207 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WL4|A Chain A, Human Cytosolic Acetoacetyl-Coa Thiolase Complexed With
Coa
pdb|1WL5|A Chain A, Human Cytosolic Acetoacetyl-Coa Thiolase
Length = 397
Score = 127 bits (318), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 57/92 (61%), Positives = 76/92 (82%)
Query: 112 KPTLMGTGPIPAVNAVLAKAGWSKEEVDLFELNEAFAAQSIACLRELGLDEAKVNVSGGA 171
+P++MG GPIPA+ + KAGWS E+VD+FE+NEAFAA S A ++ELGL+ KVN+ GGA
Sbjct: 289 EPSIMGIGPIPAIKQAVTKAGWSLEDVDIFEINEAFAAVSAAIVKELGLNPEKVNIEGGA 348
Query: 172 IALGHPIGASGTRVLVTLLYALKRLNKSKGCA 203
IALGHP+GASG R+LVTLL+ L+R+ +S+G A
Sbjct: 349 IALGHPLGASGCRILVTLLHTLERMGRSRGVA 380
>pdb|4E1L|A Chain A, Crystal Structure Of Acetoacetyl-Coa Thiolase (Thla2) From
Clostridium Difficile
pdb|4E1L|B Chain B, Crystal Structure Of Acetoacetyl-Coa Thiolase (Thla2) From
Clostridium Difficile
pdb|4E1L|C Chain C, Crystal Structure Of Acetoacetyl-Coa Thiolase (Thla2) From
Clostridium Difficile
pdb|4E1L|D Chain D, Crystal Structure Of Acetoacetyl-Coa Thiolase (Thla2) From
Clostridium Difficile
Length = 395
Score = 112 bits (280), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 53/92 (57%), Positives = 68/92 (73%)
Query: 112 KPTLMGTGPIPAVNAVLAKAGWSKEEVDLFELNEAFAAQSIACLRELGLDEAKVNVSGGA 171
+P +MGTGPIPA L KAG S ++DL E NEAFAAQ++A EL +D +K+NV+GGA
Sbjct: 288 EPEVMGTGPIPATRKALKKAGLSINDIDLIEANEAFAAQALAVKNELQIDSSKLNVNGGA 347
Query: 172 IALGHPIGASGTRVLVTLLYALKRLNKSKGCA 203
IALGHPIGASG R+LVTL+Y +++ G A
Sbjct: 348 IALGHPIGASGARILVTLIYEMQKRKVETGLA 379
>pdb|4DD5|A Chain A, Biosynthetic Thiolase (Thla1) From Clostridium Difficile
Length = 396
Score = 110 bits (274), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 51/91 (56%), Positives = 65/91 (71%)
Query: 113 PTLMGTGPIPAVNAVLAKAGWSKEEVDLFELNEAFAAQSIACLRELGLDEAKVNVSGGAI 172
P +MG GP+PA L A + E++DL E NEAFAAQS+A +R+L +D KVNV+GGAI
Sbjct: 290 PKIMGYGPVPATKKALEAANMTIEDIDLVEANEAFAAQSVAVIRDLNIDMNKVNVNGGAI 349
Query: 173 ALGHPIGASGTRVLVTLLYALKRLNKSKGCA 203
A+GHPIG SG R+L TLLY +KR + G A
Sbjct: 350 AIGHPIGCSGARILTTLLYEMKRRDAKTGLA 380
>pdb|1M4S|A Chain A, Biosynthetic Thiolase, Cys89 Acetylated, Unliganded Form
pdb|1M4S|B Chain B, Biosynthetic Thiolase, Cys89 Acetylated, Unliganded Form
pdb|1M4S|C Chain C, Biosynthetic Thiolase, Cys89 Acetylated, Unliganded Form
pdb|1M4S|D Chain D, Biosynthetic Thiolase, Cys89 Acetylated, Unliganded Form
pdb|1M4T|A Chain A, Biosynthetic Thiolase, Cys89 Butyrylated
pdb|1M4T|B Chain B, Biosynthetic Thiolase, Cys89 Butyrylated
pdb|1M4T|C Chain C, Biosynthetic Thiolase, Cys89 Butyrylated
pdb|1M4T|D Chain D, Biosynthetic Thiolase, Cys89 Butyrylated
pdb|1NL7|A Chain A, Z. Ramigera Biosynthetic Thiolase, Acetylated Enzyme
Complexed With Coa At Ph 9.5
pdb|1NL7|B Chain B, Z. Ramigera Biosynthetic Thiolase, Acetylated Enzyme
Complexed With Coa At Ph 9.5
pdb|1NL7|C Chain C, Z. Ramigera Biosynthetic Thiolase, Acetylated Enzyme
Complexed With Coa At Ph 9.5
pdb|1NL7|D Chain D, Z. Ramigera Biosynthetic Thiolase, Acetylated Enzyme
Complexed With Coa At Ph 9.5
pdb|1OU6|A Chain A, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Acetyl-O- Pantetheine-11-Pivalate
pdb|1OU6|B Chain B, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Acetyl-O- Pantetheine-11-Pivalate
pdb|1OU6|C Chain C, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Acetyl-O- Pantetheine-11-Pivalate
pdb|1OU6|D Chain D, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Acetyl-O- Pantetheine-11-Pivalate
pdb|2VU0|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
Oxidised Enzyme With Coenzyme A.
pdb|2VU0|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
Oxidised Enzyme With Coenzyme A.
pdb|2VU0|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
Oxidised Enzyme With Coenzyme A.
pdb|2VU0|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
Oxidised Enzyme With Coenzyme A.
pdb|2VU1|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex Of With O-
Pantheteine-11-Pivalate.
pdb|2VU1|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex Of With O-
Pantheteine-11-Pivalate.
pdb|2VU1|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of With O-
Pantheteine-11-Pivalate.
pdb|2VU1|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex Of With O-
Pantheteine-11-Pivalate
Length = 392
Score = 108 bits (270), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 53/91 (58%), Positives = 66/91 (72%)
Query: 113 PTLMGTGPIPAVNAVLAKAGWSKEEVDLFELNEAFAAQSIACLRELGLDEAKVNVSGGAI 172
P +MGTGPIPA L +AGW ++DL E NEAFAAQ+ A ++LG D + VNV+GGAI
Sbjct: 285 PKVMGTGPIPASRKALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAI 344
Query: 173 ALGHPIGASGTRVLVTLLYALKRLNKSKGCA 203
A+GHPIGASG R+L TLL+ +KR KG A
Sbjct: 345 AIGHPIGASGARILNTLLFEMKRRGARKGLA 375
>pdb|1DLU|A Chain A, Unliganded Biosynthetic Thiolase From Zoogloea Ramigera
pdb|1DLU|B Chain B, Unliganded Biosynthetic Thiolase From Zoogloea Ramigera
pdb|1DLU|C Chain C, Unliganded Biosynthetic Thiolase From Zoogloea Ramigera
pdb|1DLU|D Chain D, Unliganded Biosynthetic Thiolase From Zoogloea Ramigera
pdb|1DLV|A Chain A, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Coa
pdb|1DLV|B Chain B, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Coa
pdb|1DLV|C Chain C, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Coa
pdb|1DLV|D Chain D, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Coa
Length = 389
Score = 108 bits (270), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 53/91 (58%), Positives = 66/91 (72%)
Query: 113 PTLMGTGPIPAVNAVLAKAGWSKEEVDLFELNEAFAAQSIACLRELGLDEAKVNVSGGAI 172
P +MGTGPIPA L +AGW ++DL E NEAFAAQ+ A ++LG D + VNV+GGAI
Sbjct: 282 PKVMGTGPIPASRKALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAI 341
Query: 173 ALGHPIGASGTRVLVTLLYALKRLNKSKGCA 203
A+GHPIGASG R+L TLL+ +KR KG A
Sbjct: 342 AIGHPIGASGARILNTLLFEMKRRGARKGLA 372
>pdb|1QFL|A Chain A, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With A Reaction Intermediate.
pdb|1QFL|B Chain B, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With A Reaction Intermediate.
pdb|1QFL|C Chain C, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With A Reaction Intermediate.
pdb|1QFL|D Chain D, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With A Reaction Intermediate.
pdb|1DM3|A Chain A, Acetylated Biosynthetic Thiolase From Zoogloea Ramigera In
Complex With Acetyl-Coa
pdb|1DM3|B Chain B, Acetylated Biosynthetic Thiolase From Zoogloea Ramigera In
Complex With Acetyl-Coa
pdb|1DM3|C Chain C, Acetylated Biosynthetic Thiolase From Zoogloea Ramigera In
Complex With Acetyl-Coa
pdb|1DM3|D Chain D, Acetylated Biosynthetic Thiolase From Zoogloea Ramigera In
Complex With Acetyl-Coa
Length = 389
Score = 108 bits (270), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 53/91 (58%), Positives = 66/91 (72%)
Query: 113 PTLMGTGPIPAVNAVLAKAGWSKEEVDLFELNEAFAAQSIACLRELGLDEAKVNVSGGAI 172
P +MGTGPIPA L +AGW ++DL E NEAFAAQ+ A ++LG D + VNV+GGAI
Sbjct: 282 PKVMGTGPIPASRKALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAI 341
Query: 173 ALGHPIGASGTRVLVTLLYALKRLNKSKGCA 203
A+GHPIGASG R+L TLL+ +KR KG A
Sbjct: 342 AIGHPIGASGARILNTLLFEMKRRGARKGLA 372
>pdb|1M1O|A Chain A, Crystal Structure Of Biosynthetic Thiolase, C89a Mutant,
Complexed With Acetoacetyl-Coa
pdb|1M1O|B Chain B, Crystal Structure Of Biosynthetic Thiolase, C89a Mutant,
Complexed With Acetoacetyl-Coa
pdb|1M1O|C Chain C, Crystal Structure Of Biosynthetic Thiolase, C89a Mutant,
Complexed With Acetoacetyl-Coa
pdb|1M1O|D Chain D, Crystal Structure Of Biosynthetic Thiolase, C89a Mutant,
Complexed With Acetoacetyl-Coa
pdb|1M3K|A Chain A, Biosynthetic Thiolase, Inactive C89a Mutant
pdb|1M3K|B Chain B, Biosynthetic Thiolase, Inactive C89a Mutant
pdb|1M3K|C Chain C, Biosynthetic Thiolase, Inactive C89a Mutant
pdb|1M3K|D Chain D, Biosynthetic Thiolase, Inactive C89a Mutant
pdb|1M3Z|A Chain A, Biosynthetic Thiolase, C89a Mutant, Complexed With Acetyl
Coenzyme A
pdb|1M3Z|B Chain B, Biosynthetic Thiolase, C89a Mutant, Complexed With Acetyl
Coenzyme A
pdb|1M3Z|C Chain C, Biosynthetic Thiolase, C89a Mutant, Complexed With Acetyl
Coenzyme A
pdb|1M3Z|D Chain D, Biosynthetic Thiolase, C89a Mutant, Complexed With Acetyl
Coenzyme A
pdb|2VTZ|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
C89a Mutant With Coenzyme A.
pdb|2VTZ|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
C89a Mutant With Coenzyme A.
pdb|2VTZ|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
C89a Mutant With Coenzyme A.
pdb|2VTZ|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
C89a Mutant With Coenzyme A
Length = 392
Score = 108 bits (270), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 53/91 (58%), Positives = 66/91 (72%)
Query: 113 PTLMGTGPIPAVNAVLAKAGWSKEEVDLFELNEAFAAQSIACLRELGLDEAKVNVSGGAI 172
P +MGTGPIPA L +AGW ++DL E NEAFAAQ+ A ++LG D + VNV+GGAI
Sbjct: 285 PKVMGTGPIPASRKALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAI 344
Query: 173 ALGHPIGASGTRVLVTLLYALKRLNKSKGCA 203
A+GHPIGASG R+L TLL+ +KR KG A
Sbjct: 345 AIGHPIGASGARILNTLLFEMKRRGARKGLA 375
>pdb|2VU2|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex With S-
Pantetheine-11-pivalate.
pdb|2VU2|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex With S-
Pantetheine-11-pivalate.
pdb|2VU2|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex With S-
Pantetheine-11-pivalate.
pdb|2VU2|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex With S-
Pantetheine-11-pivalate
Length = 392
Score = 108 bits (270), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 53/91 (58%), Positives = 66/91 (72%)
Query: 113 PTLMGTGPIPAVNAVLAKAGWSKEEVDLFELNEAFAAQSIACLRELGLDEAKVNVSGGAI 172
P +MGTGPIPA L +AGW ++DL E NEAFAAQ+ A ++LG D + VNV+GGAI
Sbjct: 285 PKVMGTGPIPASRKALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAI 344
Query: 173 ALGHPIGASGTRVLVTLLYALKRLNKSKGCA 203
A+GHPIGASG R+L TLL+ +KR KG A
Sbjct: 345 AIGHPIGASGARILNTLLFEMKRRGARKGLA 375
>pdb|1M1T|A Chain A, Biosynthetic Thiolase, Q64a Mutant
pdb|1M1T|B Chain B, Biosynthetic Thiolase, Q64a Mutant
pdb|1M1T|C Chain C, Biosynthetic Thiolase, Q64a Mutant
pdb|1M1T|D Chain D, Biosynthetic Thiolase, Q64a Mutant
Length = 392
Score = 108 bits (269), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 53/91 (58%), Positives = 66/91 (72%)
Query: 113 PTLMGTGPIPAVNAVLAKAGWSKEEVDLFELNEAFAAQSIACLRELGLDEAKVNVSGGAI 172
P +MGTGPIPA L +AGW ++DL E NEAFAAQ+ A ++LG D + VNV+GGAI
Sbjct: 285 PKVMGTGPIPASRKALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAI 344
Query: 173 ALGHPIGASGTRVLVTLLYALKRLNKSKGCA 203
A+GHPIGASG R+L TLL+ +KR KG A
Sbjct: 345 AIGHPIGASGARILNTLLFEMKRRGARKGLA 375
>pdb|2WKV|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316d Mutant With Coenzyme A.
pdb|2WKV|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316d Mutant With Coenzyme A.
pdb|2WKV|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316d Mutant With Coenzyme A.
pdb|2WKV|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316d Mutant With Coenzyme A
Length = 392
Score = 106 bits (265), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 52/91 (57%), Positives = 66/91 (72%)
Query: 113 PTLMGTGPIPAVNAVLAKAGWSKEEVDLFELNEAFAAQSIACLRELGLDEAKVNVSGGAI 172
P +MGTGPIPA L +AGW ++DL E +EAFAAQ+ A ++LG D + VNV+GGAI
Sbjct: 285 PKVMGTGPIPASRKALERAGWKIGDLDLVEADEAFAAQACAVNKDLGWDPSIVNVNGGAI 344
Query: 173 ALGHPIGASGTRVLVTLLYALKRLNKSKGCA 203
A+GHPIGASG R+L TLL+ +KR KG A
Sbjct: 345 AIGHPIGASGARILNTLLFEMKRRGARKGLA 375
>pdb|2WKU|A Chain A, Biosynthetic Thiolase From Z. Ramigera. The N316h Mutant.
pdb|2WKU|B Chain B, Biosynthetic Thiolase From Z. Ramigera. The N316h Mutant.
pdb|2WKU|C Chain C, Biosynthetic Thiolase From Z. Ramigera. The N316h Mutant.
pdb|2WKU|D Chain D, Biosynthetic Thiolase From Z. Ramigera. The N316h Mutant
Length = 392
Score = 106 bits (264), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 52/91 (57%), Positives = 66/91 (72%)
Query: 113 PTLMGTGPIPAVNAVLAKAGWSKEEVDLFELNEAFAAQSIACLRELGLDEAKVNVSGGAI 172
P +MGTGPIPA L +AGW ++DL E +EAFAAQ+ A ++LG D + VNV+GGAI
Sbjct: 285 PKVMGTGPIPASRKALERAGWKIGDLDLVEAHEAFAAQACAVNKDLGWDPSIVNVNGGAI 344
Query: 173 ALGHPIGASGTRVLVTLLYALKRLNKSKGCA 203
A+GHPIGASG R+L TLL+ +KR KG A
Sbjct: 345 AIGHPIGASGARILNTLLFEMKRRGARKGLA 375
>pdb|2WL5|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348n Mutant With Coenzyme A.
pdb|2WL5|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348n Mutant With Coenzyme A
Length = 392
Score = 105 bits (263), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 52/91 (57%), Positives = 66/91 (72%)
Query: 113 PTLMGTGPIPAVNAVLAKAGWSKEEVDLFELNEAFAAQSIACLRELGLDEAKVNVSGGAI 172
P +MGTGPIPA L +AGW ++DL E NEAFAAQ+ A ++LG D + VNV+GGAI
Sbjct: 285 PKVMGTGPIPASRKALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAI 344
Query: 173 ALGHPIGASGTRVLVTLLYALKRLNKSKGCA 203
A+G+PIGASG R+L TLL+ +KR KG A
Sbjct: 345 AIGNPIGASGARILNTLLFEMKRRGARKGLA 375
>pdb|2WL5|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348n Mutant With Coenzyme A.
pdb|2WL5|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348n Mutant With Coenzyme A
Length = 392
Score = 105 bits (262), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 52/91 (57%), Positives = 66/91 (72%)
Query: 113 PTLMGTGPIPAVNAVLAKAGWSKEEVDLFELNEAFAAQSIACLRELGLDEAKVNVSGGAI 172
P +MGTGPIPA L +AGW ++DL E NEAFAAQ+ A ++LG D + VNV+GGAI
Sbjct: 285 PKVMGTGPIPASRKALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAI 344
Query: 173 ALGHPIGASGTRVLVTLLYALKRLNKSKGCA 203
A+G+PIGASG R+L TLL+ +KR KG A
Sbjct: 345 AIGNPIGASGARILNTLLFEMKRRGARKGLA 375
>pdb|2WL4|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348a Mutant With Coenzyme A
Length = 392
Score = 105 bits (261), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 52/91 (57%), Positives = 65/91 (71%)
Query: 113 PTLMGTGPIPAVNAVLAKAGWSKEEVDLFELNEAFAAQSIACLRELGLDEAKVNVSGGAI 172
P +MGTGPIPA L +AGW ++DL E NEAFAAQ+ A ++LG D + VNV+GGAI
Sbjct: 285 PKVMGTGPIPASRKALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAI 344
Query: 173 ALGHPIGASGTRVLVTLLYALKRLNKSKGCA 203
A+G PIGASG R+L TLL+ +KR KG A
Sbjct: 345 AIGAPIGASGARILNTLLFEMKRRGARKGLA 375
>pdb|2WL4|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348a Mutant With Coenzyme A
Length = 392
Score = 104 bits (260), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 52/91 (57%), Positives = 65/91 (71%)
Query: 113 PTLMGTGPIPAVNAVLAKAGWSKEEVDLFELNEAFAAQSIACLRELGLDEAKVNVSGGAI 172
P +MGTGPIPA L +AGW ++DL E NEAFAAQ+ A ++LG D + VNV+GGAI
Sbjct: 285 PKVMGTGPIPASRKALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAI 344
Query: 173 ALGHPIGASGTRVLVTLLYALKRLNKSKGCA 203
A+G PIGASG R+L TLL+ +KR KG A
Sbjct: 345 AIGAPIGASGARILNTLLFEMKRRGARKGLA 375
>pdb|2WL4|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348a Mutant With Coenzyme A
Length = 392
Score = 104 bits (260), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 52/91 (57%), Positives = 65/91 (71%)
Query: 113 PTLMGTGPIPAVNAVLAKAGWSKEEVDLFELNEAFAAQSIACLRELGLDEAKVNVSGGAI 172
P +MGTGPIPA L +AGW ++DL E NEAFAAQ+ A ++LG D + VNV+GGAI
Sbjct: 285 PKVMGTGPIPASRKALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAI 344
Query: 173 ALGHPIGASGTRVLVTLLYALKRLNKSKGCA 203
A+G PIGASG R+L TLL+ +KR KG A
Sbjct: 345 AIGAPIGASGARILNTLLFEMKRRGARKGLA 375
>pdb|2WL4|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348a Mutant With Coenzyme A
Length = 392
Score = 104 bits (260), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 52/91 (57%), Positives = 65/91 (71%)
Query: 113 PTLMGTGPIPAVNAVLAKAGWSKEEVDLFELNEAFAAQSIACLRELGLDEAKVNVSGGAI 172
P +MGTGPIPA L +AGW ++DL E NEAFAAQ+ A ++LG D + VNV+GGAI
Sbjct: 285 PKVMGTGPIPASRKALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAI 344
Query: 173 ALGHPIGASGTRVLVTLLYALKRLNKSKGCA 203
A+G PIGASG R+L TLL+ +KR KG A
Sbjct: 345 AIGAPIGASGARILNTLLFEMKRRGARKGLA 375
>pdb|2WL6|A Chain A, Biosynthetic Thiolase From Z. Ramigera. The N316h-H348n
Mutant.
pdb|2WL6|B Chain B, Biosynthetic Thiolase From Z. Ramigera. The N316h-H348n
Mutant.
pdb|2WL6|C Chain C, Biosynthetic Thiolase From Z. Ramigera. The N316h-H348n
Mutant.
pdb|2WL6|D Chain D, Biosynthetic Thiolase From Z. Ramigera. The N316h-H348n
Mutant
Length = 392
Score = 103 bits (256), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 51/91 (56%), Positives = 66/91 (72%)
Query: 113 PTLMGTGPIPAVNAVLAKAGWSKEEVDLFELNEAFAAQSIACLRELGLDEAKVNVSGGAI 172
P +MGTGPIPA L +AGW ++DL E +EAFAAQ+ A ++LG D + VNV+GGAI
Sbjct: 285 PKVMGTGPIPASRKALERAGWKIGDLDLVEAHEAFAAQACAVNKDLGWDPSIVNVNGGAI 344
Query: 173 ALGHPIGASGTRVLVTLLYALKRLNKSKGCA 203
A+G+PIGASG R+L TLL+ +KR KG A
Sbjct: 345 AIGNPIGASGARILNTLLFEMKRRGARKGLA 375
>pdb|3SS6|A Chain A, Crystal Structure Of The Bacillus Anthracis Acetyl-Coa
Acetyltransferase
pdb|3SS6|B Chain B, Crystal Structure Of The Bacillus Anthracis Acetyl-Coa
Acetyltransferase
Length = 394
Score = 102 bits (255), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 48/91 (52%), Positives = 61/91 (67%)
Query: 113 PTLMGTGPIPAVNAVLAKAGWSKEEVDLFELNEAFAAQSIACLRELGLDEAKVNVSGGAI 172
P +MG GP PA+ L K WS E+ DL E+NEAFAAQ +A +EL LD KVNV+G +
Sbjct: 287 PKIMGIGPAPAIRKGLEKVDWSLEDADLLEINEAFAAQYLAVEKELDLDREKVNVNGSGV 346
Query: 173 ALGHPIGASGTRVLVTLLYALKRLNKSKGCA 203
LGHPIG +G R+ V+L++ LKR KG A
Sbjct: 347 GLGHPIGCTGARITVSLIHELKRRGLEKGIA 377
>pdb|2WU9|A Chain A, Crystal Structure Of Peroxisomal Kat2 From Arabidopsis
Thaliana
pdb|2WU9|B Chain B, Crystal Structure Of Peroxisomal Kat2 From Arabidopsis
Thaliana
Length = 442
Score = 100 bits (248), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 44/86 (51%), Positives = 63/86 (73%)
Query: 113 PTLMGTGPIPAVNAVLAKAGWSKEEVDLFELNEAFAAQSIACLRELGLDEAKVNVSGGAI 172
P +MG GP A+ A + AG +++DLFE+NEAFA+Q + C +LGLD K+NV+GGA+
Sbjct: 310 PAIMGIGPAVAIPAAVKAAGLELDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGAM 369
Query: 173 ALGHPIGASGTRVLVTLLYALKRLNK 198
A+GHP+GA+G R + TLL+ +KR K
Sbjct: 370 AIGHPLGATGARCVATLLHEMKRRGK 395
>pdb|2C7Y|A Chain A, Plant Enzyme
pdb|2C7Y|B Chain B, Plant Enzyme
pdb|2C7Z|A Chain A, Plant Enzyme Crystal Form Ii
Length = 404
Score = 100 bits (248), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 44/86 (51%), Positives = 63/86 (73%)
Query: 113 PTLMGTGPIPAVNAVLAKAGWSKEEVDLFELNEAFAAQSIACLRELGLDEAKVNVSGGAI 172
P +MG GP A+ A + AG +++DLFE+NEAFA+Q + C +LGLD K+NV+GGA+
Sbjct: 293 PAIMGIGPAVAIPAAVKAAGLELDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGAM 352
Query: 173 ALGHPIGASGTRVLVTLLYALKRLNK 198
A+GHP+GA+G R + TLL+ +KR K
Sbjct: 353 AIGHPLGATGARCVATLLHEMKRRGK 378
>pdb|2WUA|A Chain A, Structure Of The Peroxisomal 3-Ketoacyl-Coa Thiolase From
Sunflower
pdb|2WUA|B Chain B, Structure Of The Peroxisomal 3-Ketoacyl-Coa Thiolase From
Sunflower
Length = 440
Score = 96.7 bits (239), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 41/83 (49%), Positives = 63/83 (75%)
Query: 113 PTLMGTGPIPAVNAVLAKAGWSKEEVDLFELNEAFAAQSIACLRELGLDEAKVNVSGGAI 172
P++MG GP A+ A + AG +++DLFE+NEAFA+Q + C ++L +D K+NV+GGA+
Sbjct: 313 PSIMGIGPAVAIPAAVKAAGLQIDDIDLFEINEAFASQFVYCQKKLEIDPQKINVNGGAM 372
Query: 173 ALGHPIGASGTRVLVTLLYALKR 195
A+GHP+GA+G R + TLL+ +KR
Sbjct: 373 AIGHPLGATGARCVATLLHEMKR 395
>pdb|1ULQ|A Chain A, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|B Chain B, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|C Chain C, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|D Chain D, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|E Chain E, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|F Chain F, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|G Chain G, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|H Chain H, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
Length = 401
Score = 96.3 bits (238), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 52/114 (45%), Positives = 73/114 (64%), Gaps = 6/114 (5%)
Query: 96 ADAHGVSKSTVQRTVH----KPTLMGTGPIPAVNAVLAKAGWSKEEVDLFELNEAFAAQS 151
A AHG+ R + P +MG GP+PA L +AG S ++ L ELNEAFAAQ+
Sbjct: 270 AKAHGLRPLARVRAIAVAGVPPRIMGIGPVPATRKALERAGLSFSDLGLIELNEAFAAQA 329
Query: 152 IACLRE--LGLDEAKVNVSGGAIALGHPIGASGTRVLVTLLYALKRLNKSKGCA 203
+A LRE L +++ ++N +GGAIALGHP+GASG R+L TL++ ++R G A
Sbjct: 330 LAVLREWSLSMEDQRLNPNGGAIALGHPLGASGARILTTLVHEMRRRKVQFGLA 383
>pdb|3GOA|A Chain A, Crystal Structure Of The Salmonella Typhimurium Fada 3-
Ketoacyl-Coa Thiolase
pdb|3GOA|B Chain B, Crystal Structure Of The Salmonella Typhimurium Fada 3-
Ketoacyl-Coa Thiolase
Length = 387
Score = 95.1 bits (235), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 46/94 (48%), Positives = 64/94 (68%), Gaps = 3/94 (3%)
Query: 113 PTLMGTGPIPAVNAVLAKAGWSKEEVDLFELNEAFAAQSIACLRELGLDEA---KVNVSG 169
P++ G GP+PA L KAG S ++D+FE NEAFAAQ + C+++LGL E K+N++G
Sbjct: 277 PSIXGYGPVPASKLALKKAGLSASDIDVFEXNEAFAAQILPCIKDLGLXEQIDEKINLNG 336
Query: 170 GAIALGHPIGASGTRVLVTLLYALKRLNKSKGCA 203
GAIALGHP+G SG R+ TL+ +R + G A
Sbjct: 337 GAIALGHPLGCSGARISTTLINLXERKDAQFGLA 370
>pdb|1AFW|A Chain A, The 1.8 Angstrom Crystal Structure Of The Dimeric
Peroxisomal Thiolase Of Saccharomyces Cerevisiae
pdb|1AFW|B Chain B, The 1.8 Angstrom Crystal Structure Of The Dimeric
Peroxisomal Thiolase Of Saccharomyces Cerevisiae
Length = 393
Score = 93.6 bits (231), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 42/83 (50%), Positives = 59/83 (71%)
Query: 113 PTLMGTGPIPAVNAVLAKAGWSKEEVDLFELNEAFAAQSIACLRELGLDEAKVNVSGGAI 172
P +MG GP A+ VL G +++D+FE+NEAFAAQ++ C+ +LG+D KVN GGAI
Sbjct: 288 PEIMGVGPAYAIPKVLEATGLQVQDIDIFEINEAFAAQALYCIHKLGIDLNKVNPRGGAI 347
Query: 173 ALGHPIGASGTRVLVTLLYALKR 195
ALGHP+G +G R + T+L LK+
Sbjct: 348 ALGHPLGCTGARQVATILRELKK 370
>pdb|1PXT|A Chain A, The 2.8 Angstroms Structure Of Peroxisomal 3-Ketoacyl-Coa
Thiolase Of Saccharomyces Cerevisiae: A Five Layered
A-B-A- B-A Structure, Constructed From Two Core Domains
Of Identical Topology
pdb|1PXT|B Chain B, The 2.8 Angstroms Structure Of Peroxisomal 3-Ketoacyl-Coa
Thiolase Of Saccharomyces Cerevisiae: A Five Layered
A-B-A- B-A Structure, Constructed From Two Core Domains
Of Identical Topology
Length = 390
Score = 93.6 bits (231), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 42/83 (50%), Positives = 59/83 (71%)
Query: 113 PTLMGTGPIPAVNAVLAKAGWSKEEVDLFELNEAFAAQSIACLRELGLDEAKVNVSGGAI 172
P +MG GP A+ VL G +++D+FE+NEAFAAQ++ C+ +LG+D KVN GGAI
Sbjct: 285 PEIMGVGPAYAIPKVLEATGLQVQDIDIFEINEAFAAQALYCIHKLGIDLNKVNPRGGAI 344
Query: 173 ALGHPIGASGTRVLVTLLYALKR 195
ALGHP+G +G R + T+L LK+
Sbjct: 345 ALGHPLGCTGARQVATILRELKK 367
>pdb|2IIK|A Chain A, Crystal Structure Of Human Peroxisomal Acetyl-Coa Acyl
Transferase 1 (Acaa1)
pdb|2IIK|B Chain B, Crystal Structure Of Human Peroxisomal Acetyl-Coa Acyl
Transferase 1 (Acaa1)
Length = 418
Score = 91.7 bits (226), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 44/86 (51%), Positives = 59/86 (68%)
Query: 113 PTLMGTGPIPAVNAVLAKAGWSKEEVDLFELNEAFAAQSIACLRELGLDEAKVNVSGGAI 172
P +MG GP A+ L KAG + +VD+FE+NEAFA+Q+ C+ +L L KVN GGA+
Sbjct: 308 PDIMGIGPAYAIPVALQKAGLTVSDVDIFEINEAFASQAAYCVEKLRLPPEKVNPLGGAV 367
Query: 173 ALGHPIGASGTRVLVTLLYALKRLNK 198
ALGHP+G +G R ++TLL LKR K
Sbjct: 368 ALGHPLGCTGARQVITLLNELKRRGK 393
>pdb|2WKT|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316a Mutant With Coenzyme A.
pdb|2WKT|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316a Mutant With Coenzyme A.
pdb|2WKT|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316a Mutant With Coenzyme A
Length = 392
Score = 90.1 bits (222), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 52/91 (57%), Positives = 65/91 (71%)
Query: 113 PTLMGTGPIPAVNAVLAKAGWSKEEVDLFELNEAFAAQSIACLRELGLDEAKVNVSGGAI 172
P +MGTGPIPA L +AGW ++DL E EAFAAQ+ A ++LG D + VNV+GGAI
Sbjct: 285 PKVMGTGPIPASRKALERAGWKIGDLDLVEAAEAFAAQACAVNKDLGWDPSIVNVNGGAI 344
Query: 173 ALGHPIGASGTRVLVTLLYALKRLNKSKGCA 203
A+GHPIGASG R+L TLL+ +KR KG A
Sbjct: 345 AIGHPIGASGARILNTLLFEMKRRGARKGLA 375
>pdb|2WKT|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316a Mutant With Coenzyme A
Length = 392
Score = 90.1 bits (222), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 52/91 (57%), Positives = 65/91 (71%)
Query: 113 PTLMGTGPIPAVNAVLAKAGWSKEEVDLFELNEAFAAQSIACLRELGLDEAKVNVSGGAI 172
P +MGTGPIPA L +AGW ++DL E EAFAAQ+ A ++LG D + VNV+GGAI
Sbjct: 285 PKVMGTGPIPASRKALERAGWKIGDLDLVEAAEAFAAQACAVNKDLGWDPSIVNVNGGAI 344
Query: 173 ALGHPIGASGTRVLVTLLYALKRLNKSKGCA 203
A+GHPIGASG R+L TLL+ +KR KG A
Sbjct: 345 AIGHPIGASGARILNTLLFEMKRRGARKGLA 375
>pdb|1WDK|C Chain C, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native2)
pdb|1WDK|D Chain D, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native2)
pdb|1WDL|C Chain C, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form Ii (Native4)
pdb|1WDL|D Chain D, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form Ii (Native4)
pdb|1WDM|C Chain C, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native3)
pdb|1WDM|D Chain D, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native3)
pdb|2D3T|C Chain C, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form V
pdb|2D3T|D Chain D, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form V
Length = 390
Score = 87.4 bits (215), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 44/86 (51%), Positives = 59/86 (68%), Gaps = 3/86 (3%)
Query: 113 PTLMGTGPIPAVNAVLAKAGWSKEEVDLFELNEAFAAQSIACLRELG-LDEA--KVNVSG 169
P +MG GP+PA L +AG + ++D ELNEAFAAQ++ L++L LD+ KVN+ G
Sbjct: 280 PAIMGYGPVPATQKALKRAGLNMADIDFIELNEAFAAQALPVLKDLKVLDKMNEKVNLHG 339
Query: 170 GAIALGHPIGASGTRVLVTLLYALKR 195
GAIALGHP G SG R+ TLL +K+
Sbjct: 340 GAIALGHPFGCSGARISGTLLNVMKQ 365
>pdb|3SVK|A Chain A, Crystal Structure Of Acetyl-Coa Acetyltransferase From
Mycobacterium Avium
pdb|3SVK|B Chain B, Crystal Structure Of Acetyl-Coa Acetyltransferase From
Mycobacterium Avium
Length = 407
Score = 85.9 bits (211), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 40/88 (45%), Positives = 62/88 (70%)
Query: 113 PTLMGTGPIPAVNAVLAKAGWSKEEVDLFELNEAFAAQSIACLRELGLDEAKVNVSGGAI 172
P +M TGP PA VL +AG + +++DLFELNEAFA+ + ++L + + K+NV+GGAI
Sbjct: 300 PVIMLTGPTPATRKVLDRAGLTIDDIDLFELNEAFASVVLKFQKDLNIPDEKLNVNGGAI 359
Query: 173 ALGHPIGASGTRVLVTLLYALKRLNKSK 200
A+GHP+GA+G + T++ L+R N +
Sbjct: 360 AMGHPLGATGAMITGTMVDELERRNARR 387
>pdb|2IBU|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-coa Thiolase (t2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBU|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-coa Thiolase (t2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBU|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-coa Thiolase (t2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBU|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-coa Thiolase (t2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBW|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBW|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBW|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBW|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBY|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBY|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBY|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBY|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
Length = 395
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 54/76 (71%)
Query: 120 PIPAVNAVLAKAGWSKEEVDLFELNEAFAAQSIACLRELGLDEAKVNVSGGAIALGHPIG 179
P+ A + VL G KE++ ++E+NEAF+ +A ++ L +D KVN++GGA++LGHPIG
Sbjct: 297 PVYAASMVLKDVGLKKEDIAMWEVNEAFSLVVLANIKMLEIDPQKVNINGGAVSLGHPIG 356
Query: 180 ASGTRVLVTLLYALKR 195
SG R++ L +ALK+
Sbjct: 357 MSGARIVGHLTHALKQ 372
>pdb|2IB7|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB7|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB7|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB7|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB8|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB8|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB8|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB8|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB9|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB9|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB9|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB9|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
Length = 395
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 54/76 (71%)
Query: 120 PIPAVNAVLAKAGWSKEEVDLFELNEAFAAQSIACLRELGLDEAKVNVSGGAIALGHPIG 179
P+ A + VL G KE++ ++E+NEAF+ +A ++ L +D KVN++GGA++LGHPIG
Sbjct: 297 PVYAASMVLKDVGLKKEDIAMWEVNEAFSLVVLANIKMLEIDPQKVNINGGAVSLGHPIG 356
Query: 180 ASGTRVLVTLLYALKR 195
SG R++ L +ALK+
Sbjct: 357 MSGARIVGHLTHALKQ 372
>pdb|2F2S|A Chain A, Human Mitochondrial Acetoacetyl-Coa Thiolase
pdb|2F2S|B Chain B, Human Mitochondrial Acetoacetyl-Coa Thiolase
pdb|2F2S|C Chain C, Human Mitochondrial Acetoacetyl-Coa Thiolase
pdb|2F2S|D Chain D, Human Mitochondrial Acetoacetyl-Coa Thiolase
Length = 406
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 54/76 (71%)
Query: 120 PIPAVNAVLAKAGWSKEEVDLFELNEAFAAQSIACLRELGLDEAKVNVSGGAIALGHPIG 179
P+ A + VL G KE++ ++E+NEAF+ +A ++ L +D KVN++GGA++LGHPIG
Sbjct: 308 PVYAASMVLKDVGLKKEDIAMWEVNEAFSLVVLANIKMLEIDPQKVNINGGAVSLGHPIG 367
Query: 180 ASGTRVLVTLLYALKR 195
SG R++ L +ALK+
Sbjct: 368 MSGARIVGHLTHALKQ 383
>pdb|3ROW|A Chain A, Crystal Structure Of Xanthomonas Campestri Olea
pdb|3ROW|B Chain B, Crystal Structure Of Xanthomonas Campestri Olea
pdb|3S1Z|A Chain A, Crystal Structure Of Acetamide Bound Xanthomonas Campestri
Olea
pdb|3S1Z|B Chain B, Crystal Structure Of Acetamide Bound Xanthomonas Campestri
Olea
pdb|3S20|A Chain A, Crystal Structure Of Cerulenin Bound Xanthomonas Campestri
Olea (Soak)
pdb|3S20|B Chain B, Crystal Structure Of Cerulenin Bound Xanthomonas Campestri
Olea (Soak)
Length = 344
Score = 31.2 bits (69), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Query: 132 GWSKEEVDLFELNEAFAAQSIACLRELGLDEAKVNVSGGAIALGHPIGASGTRVLVTLLY 191
GW+ EE+D F +++ + A ++ G+D AKV G IG + ++++ L
Sbjct: 259 GWAVEELDQFVIHQVSRPHTAAFVKSFGIDPAKVMTIFGEHG---NIGPASVPIVLSKLK 315
Query: 192 ALKRLNKSKGCAV 204
L RL K A+
Sbjct: 316 ELGRLKKGDRIAL 328
>pdb|3S21|A Chain A, Crystal Structure Of Cerulenin Bound Xanthomonas Campestri
Olea (Co- Crystal)
pdb|3S23|A Chain A, Crystal Structure Of Cerulenin Bound Xanthomonas Campestri
Olea (Co- Crystal) Xe Derivative
Length = 345
Score = 31.2 bits (69), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Query: 132 GWSKEEVDLFELNEAFAAQSIACLRELGLDEAKVNVSGGAIALGHPIGASGTRVLVTLLY 191
GW+ EE+D F +++ + A ++ G+D AKV G IG + ++++ L
Sbjct: 260 GWAVEELDQFVIHQVSRPHTAAFVKSFGIDPAKVMTIFGEHG---NIGPASVPIVLSKLK 316
Query: 192 ALKRLNKSKGCAV 204
L RL K A+
Sbjct: 317 ELGRLKKGDRIAL 329
>pdb|3FK5|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Iii, Fabh (Xoo4209) From Xanthomonas Oryzae Pv.
Oryzae Kacc10331
Length = 338
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Query: 132 GWSKEEVDLFELNEAFAAQSIACLRELGLDEAKVNVSGGAIALGHPIGASGTRVLVTLLY 191
GW+ +E+D F +++ + A ++ G+D AKV G IG + ++++ L
Sbjct: 253 GWAVDELDQFVIHQVSRPHTAAFVKSFGIDPAKVMTIFGEHG---NIGPASVPIVLSKLK 309
Query: 192 ALKRLNKSKGCAV 204
L RL K A+
Sbjct: 310 ELGRLKKGDRIAL 322
>pdb|1PX8|A Chain A, Crystal Structure Of Beta-D-Xylosidase From
Thermoanaerobacterium Saccharolyticum, A Family 39
Glycoside Hydrolase
pdb|1PX8|B Chain B, Crystal Structure Of Beta-D-Xylosidase From
Thermoanaerobacterium Saccharolyticum, A Family 39
Glycoside Hydrolase
pdb|1UHV|A Chain A, Crystal Structure Of Beta-D-Xylosidase From
Thermoanaerobacterium Saccharolyticum, A Family 39
Glycoside Hydrolase
pdb|1UHV|B Chain B, Crystal Structure Of Beta-D-Xylosidase From
Thermoanaerobacterium Saccharolyticum, A Family 39
Glycoside Hydrolase
pdb|1UHV|C Chain C, Crystal Structure Of Beta-D-Xylosidase From
Thermoanaerobacterium Saccharolyticum, A Family 39
Glycoside Hydrolase
pdb|1UHV|D Chain D, Crystal Structure Of Beta-D-Xylosidase From
Thermoanaerobacterium Saccharolyticum, A Family 39
Glycoside Hydrolase
Length = 500
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 108 RTVHKPTLMGTGPIPAVNAVLAKAGWSKEEVDLFELNEAFAAQSIACLRELGLDEAKVN 166
R V KP +M + P+ + K K V L+EL E S +GLD++K+N
Sbjct: 444 REVAKPEIMTSQPVANDGYLNLKFKLGKNAVVLYELTERIDESSTY----IGLDDSKIN 498
>pdb|3KZU|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Ii From Brucella Melitensis
pdb|3KZU|B Chain B, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Ii From Brucella Melitensis
pdb|3KZU|C Chain C, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Ii From Brucella Melitensis
Length = 428
Score = 28.1 bits (61), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 44/102 (43%), Gaps = 12/102 (11%)
Query: 84 HWLGNGAQYHITADAHGVSKSTVQRTVHKPTLMGTGPIPAVNAVLAKAGWSKEEVDLFEL 143
H L GA+ + +G+S T PT G G + A L +AG +E+D
Sbjct: 261 HALARGAKIYAEVIGYGMSGDAFHITA--PTESGEGAQRCMVAALKRAGIVPDEIDYIN- 317
Query: 144 NEAFAAQSIACLRELGLDE-------AKVNVSGGAIALGHPI 178
A ++A ELG E AK+++S ++GH +
Sbjct: 318 --AHGTSTMADTIELGAVERVVGEAAAKISMSSTKSSIGHLL 357
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,909,353
Number of Sequences: 62578
Number of extensions: 217026
Number of successful extensions: 564
Number of sequences better than 100.0: 49
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 521
Number of HSP's gapped (non-prelim): 49
length of query: 207
length of database: 14,973,337
effective HSP length: 94
effective length of query: 113
effective length of database: 9,091,005
effective search space: 1027283565
effective search space used: 1027283565
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)