RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10774
(207 letters)
>gnl|CDD|238383 cd00751, thiolase, Thiolase are ubiquitous enzymes that catalyze
the reversible thiolytic cleavage of 3-ketoacyl-CoA into
acyl-CoA and acetyl-CoA, a 2-step reaction involving a
covalent intermediate formed with a catalytic cysteine.
They are found in prokaryotes and eukaryotes (cytosol,
microbodies and mitochondria). There are 2 functional
different classes: thiolase-I (3-ketoacyl-CoA thiolase)
and thiolase-II (acetoacetyl-CoA thiolase). Thiolase-I
can cleave longer fatty acid molecules and plays an
important role in the beta-oxidative degradation of
fatty acids. Thiolase-II has a high substrate
specificity. Although it can cleave acetoacyl-CoA, its
main function is the synthesis of acetoacyl-CoA from two
molecules of acetyl-CoA, which gives it importance in
several biosynthetic pathways.
Length = 386
Score = 165 bits (420), Expect = 1e-49
Identities = 55/91 (60%), Positives = 72/91 (79%)
Query: 113 PTLMGTGPIPAVNAVLAKAGWSKEEVDLFELNEAFAAQSIACLRELGLDEAKVNVSGGAI 172
P +MG GP+PA+ L +AG + +++DL E+NEAFAAQ++ACL+ELGLD KVNV+GGAI
Sbjct: 280 PAIMGIGPVPAIPKALKRAGLTLDDIDLIEINEAFAAQALACLKELGLDPEKVNVNGGAI 339
Query: 173 ALGHPIGASGTRVLVTLLYALKRLNKSKGCA 203
ALGHP+GASG R++VTLL+ LKR G A
Sbjct: 340 ALGHPLGASGARIVVTLLHELKRRGGRYGLA 370
>gnl|CDD|180261 PRK05790, PRK05790, putative acyltransferase; Provisional.
Length = 393
Score = 162 bits (412), Expect = 2e-48
Identities = 58/91 (63%), Positives = 71/91 (78%)
Query: 113 PTLMGTGPIPAVNAVLAKAGWSKEEVDLFELNEAFAAQSIACLRELGLDEAKVNVSGGAI 172
P +MG GP+PA+ L KAGWS ++DL E+NEAFAAQ++A +ELGLD KVNV+GGAI
Sbjct: 286 PAIMGIGPVPAIRKALEKAGWSLADLDLIEINEAFAAQALAVEKELGLDPEKVNVNGGAI 345
Query: 173 ALGHPIGASGTRVLVTLLYALKRLNKSKGCA 203
ALGHPIGASG R+LVTLL+ +KR KG A
Sbjct: 346 ALGHPIGASGARILVTLLHEMKRRGAKKGLA 376
>gnl|CDD|145779 pfam02803, Thiolase_C, Thiolase, C-terminal domain. Thiolase is
reported to be structurally related to beta-ketoacyl
synthase (pfam00109), and also chalcone synthase.
Length = 123
Score = 143 bits (362), Expect = 3e-44
Identities = 53/91 (58%), Positives = 68/91 (74%)
Query: 113 PTLMGTGPIPAVNAVLAKAGWSKEEVDLFELNEAFAAQSIACLRELGLDEAKVNVSGGAI 172
P +MG GP A+ L KAG + ++DLFE+NEAFAAQ++A ++LG+D KVNV+GGAI
Sbjct: 17 PAIMGIGPAYAIPKALKKAGLTVNDIDLFEINEAFAAQALAVAKDLGIDPEKVNVNGGAI 76
Query: 173 ALGHPIGASGTRVLVTLLYALKRLNKSKGCA 203
ALGHP+GASG R+LVTLL+ LKR G A
Sbjct: 77 ALGHPLGASGARILVTLLHELKRRGGKYGLA 107
>gnl|CDD|233642 TIGR01930, AcCoA-C-Actrans, acetyl-CoA acetyltransferases. This
model represents a large family of enzymes which
catalyze the thiolysis of a linear fatty acid CoA (or
acetoacetyl-CoA) using a second CoA molecule to produce
acetyl-CoA and a CoA-ester product two carbons shorter
(or, alternatively, the condensation of two molecules of
acetyl-CoA to produce acetoacetyl-CoA and CoA). This
enzyme is also known as "thiolase", "3-ketoacyl-CoA
thiolase", "beta-ketothiolase" and "Fatty oxidation
complex beta subunit". When catalyzing the degradative
reaction on fatty acids the corresponding EC number is
2.3.1.16. The condensation reaction corresponds to
2.3.1.9. Note that the enzymes which catalyze the
condensation are generally not involved in fatty acid
biosynthesis, which is carried out by a decarboxylating
condensation of acetyl and malonyl esters of acyl
carrier proteins. Rather, this activity may produce
acetoacetyl-CoA for pathways such as IPP biosynthesis in
the absence of sufficient fatty acid oxidation [Fatty
acid and phospholipid metabolism, Other].
Length = 386
Score = 148 bits (375), Expect = 5e-43
Identities = 56/91 (61%), Positives = 70/91 (76%)
Query: 113 PTLMGTGPIPAVNAVLAKAGWSKEEVDLFELNEAFAAQSIACLRELGLDEAKVNVSGGAI 172
P +MG GP+PA+ L KAG S ++DLFE+NEAFAAQ +AC++ELGLD KVNV+GGAI
Sbjct: 281 PEIMGLGPVPAIPKALKKAGLSISDIDLFEINEAFAAQVLACIKELGLDLEKVNVNGGAI 340
Query: 173 ALGHPIGASGTRVLVTLLYALKRLNKSKGCA 203
ALGHP+GASG R++ TLL+ LKR G A
Sbjct: 341 ALGHPLGASGARIVTTLLHELKRRGGRYGLA 371
>gnl|CDD|168156 PRK05656, PRK05656, acetyl-CoA acetyltransferase; Provisional.
Length = 393
Score = 123 bits (309), Expect = 2e-33
Identities = 59/91 (64%), Positives = 68/91 (74%)
Query: 113 PTLMGTGPIPAVNAVLAKAGWSKEEVDLFELNEAFAAQSIACLRELGLDEAKVNVSGGAI 172
P +MG GP+ A L KAGWS E+DL E NEAFAAQS+A +ELG D AKVNV+GGAI
Sbjct: 286 PAIMGIGPVSATRRCLDKAGWSLAELDLIEANEAFAAQSLAVGKELGWDAAKVNVNGGAI 345
Query: 173 ALGHPIGASGTRVLVTLLYALKRLNKSKGCA 203
ALGHPIGASG RVLVTLL+ + R + KG A
Sbjct: 346 ALGHPIGASGCRVLVTLLHEMIRRDAKKGLA 376
>gnl|CDD|215161 PLN02287, PLN02287, 3-ketoacyl-CoA thiolase.
Length = 452
Score = 122 bits (309), Expect = 3e-33
Identities = 47/86 (54%), Positives = 64/86 (74%)
Query: 113 PTLMGTGPIPAVNAVLAKAGWSKEEVDLFELNEAFAAQSIACLRELGLDEAKVNVSGGAI 172
P +MG GP A+ A + AG +++DLFE+NEAFA+Q + C ++LGLD KVNV+GGAI
Sbjct: 326 PAVMGIGPAVAIPAAVKAAGLELDDIDLFEINEAFASQFVYCCKKLGLDPEKVNVNGGAI 385
Query: 173 ALGHPIGASGTRVLVTLLYALKRLNK 198
ALGHP+GA+G R + TLL+ +KR K
Sbjct: 386 ALGHPLGATGARCVATLLHEMKRRGK 411
>gnl|CDD|181624 PRK09050, PRK09050, beta-ketoadipyl CoA thiolase; Validated.
Length = 401
Score = 121 bits (305), Expect = 8e-33
Identities = 47/93 (50%), Positives = 65/93 (69%), Gaps = 2/93 (2%)
Query: 113 PTLMGTGPIPAVNAVLAKAGWSKEEVDLFELNEAFAAQSIACLRELGL--DEAKVNVSGG 170
P +MG GP PA +LA+ G + ++ D+ ELNEAFAAQ +A LR+LGL D+A+VN +GG
Sbjct: 292 PRIMGIGPAPATRKLLARLGLTIDQFDVIELNEAFAAQGLAVLRQLGLADDDARVNPNGG 351
Query: 171 AIALGHPIGASGTRVLVTLLYALKRLNKSKGCA 203
AIALGHP+G SG R+++T L+ L+R
Sbjct: 352 AIALGHPLGMSGARLVLTALHQLERTGGRYALC 384
>gnl|CDD|181625 PRK09051, PRK09051, beta-ketothiolase; Provisional.
Length = 394
Score = 119 bits (300), Expect = 4e-32
Identities = 44/85 (51%), Positives = 58/85 (68%)
Query: 113 PTLMGTGPIPAVNAVLAKAGWSKEEVDLFELNEAFAAQSIACLRELGLDEAKVNVSGGAI 172
P MG GP+PA L +AG + ++D+ E NEAFAAQ+ A RELGLD AKVN +G I
Sbjct: 287 PEYMGIGPVPATQKALERAGLTVADLDVIEANEAFAAQACAVTRELGLDPAKVNPNGSGI 346
Query: 173 ALGHPIGASGTRVLVTLLYALKRLN 197
+LGHP+GA+G + V LY L+R+
Sbjct: 347 SLGHPVGATGAIITVKALYELQRIG 371
>gnl|CDD|181072 PRK07661, PRK07661, acetyl-CoA acetyltransferase; Provisional.
Length = 391
Score = 118 bits (298), Expect = 6e-32
Identities = 49/89 (55%), Positives = 66/89 (74%)
Query: 113 PTLMGTGPIPAVNAVLAKAGWSKEEVDLFELNEAFAAQSIACLRELGLDEAKVNVSGGAI 172
P +MG GPI A+ L AG ++ LFELNEAFA+QSI +RELGLDE KVNV+GGAI
Sbjct: 284 PEVMGIGPIAAIPKALKLAGLELSDIGLFELNEAFASQSIQVIRELGLDEEKVNVNGGAI 343
Query: 173 ALGHPIGASGTRVLVTLLYALKRLNKSKG 201
ALGHP+G +G ++ ++L++ +KR N+ G
Sbjct: 344 ALGHPLGCTGAKLTLSLIHEMKRRNEQFG 372
>gnl|CDD|181626 PRK09052, PRK09052, acetyl-CoA acetyltransferase; Provisional.
Length = 399
Score = 118 bits (298), Expect = 9e-32
Identities = 48/89 (53%), Positives = 65/89 (73%)
Query: 113 PTLMGTGPIPAVNAVLAKAGWSKEEVDLFELNEAFAAQSIACLRELGLDEAKVNVSGGAI 172
P +MG GPI A+ A L +AG ++++D ELNEAFAAQS+A +R+LGLD +KVN GGAI
Sbjct: 292 PEIMGIGPIEAIPAALKQAGLKQDDLDWIELNEAFAAQSLAVIRDLGLDPSKVNPLGGAI 351
Query: 173 ALGHPIGASGTRVLVTLLYALKRLNKSKG 201
ALGHP+GA+G T+++ L+R N G
Sbjct: 352 ALGHPLGATGAIRTATVVHGLRRTNLKYG 380
>gnl|CDD|181592 PRK08947, fadA, 3-ketoacyl-CoA thiolase; Reviewed.
Length = 387
Score = 118 bits (297), Expect = 1e-31
Identities = 52/95 (54%), Positives = 69/95 (72%), Gaps = 5/95 (5%)
Query: 113 PTLMGTGPIPAVNAVLAKAGWSKEEVDLFELNEAFAAQSIACLRELGL----DEAKVNVS 168
P++MG GP+PA L +AG S ++D+FELNEAFAAQS+ CL++LGL DE KVN++
Sbjct: 277 PSIMGYGPVPATQKALKRAGLSISDIDVFELNEAFAAQSLPCLKDLGLLDKMDE-KVNLN 335
Query: 169 GGAIALGHPIGASGTRVLVTLLYALKRLNKSKGCA 203
GGAIALGHP+G SG R+ TLL ++R + G A
Sbjct: 336 GGAIALGHPLGCSGARISTTLLNLMERKDAQFGLA 370
>gnl|CDD|131483 TIGR02430, pcaF, 3-oxoadipyl-CoA thiolase. Members of this family
are designated beta-ketoadipyl CoA thiolase, an enzyme
that acts at the end of pathways for the degradation of
protocatechuate (from benzoate and related compounds)
and of phenylacetic acid.
Length = 400
Score = 117 bits (296), Expect = 1e-31
Identities = 60/137 (43%), Positives = 81/137 (59%), Gaps = 26/137 (18%)
Query: 69 RRHALTSRQQVLLTLHWLGNGAQYHITADAHGVSKSTVQRTVHKPTLMGTGPIPAVNAVL 128
+RH LT R ++L A GV +P +MG GP+PA +L
Sbjct: 271 QRHGLTPRARIL--------------AAATAGV----------EPRIMGIGPVPATQKLL 306
Query: 129 AKAGWSKEEVDLFELNEAFAAQSIACLRELGL--DEAKVNVSGGAIALGHPIGASGTRVL 186
A+AG S ++ D+ ELNEAFAAQ++A LRELGL D+A+VN +GGAIALGHP+GASG R++
Sbjct: 307 ARAGLSIDQFDVIELNEAFAAQALAVLRELGLADDDARVNPNGGAIALGHPLGASGARLV 366
Query: 187 VTLLYALKRLNKSKGCA 203
+T L L+R
Sbjct: 367 LTALRQLERSGGRYALC 383
>gnl|CDD|168632 PRK06633, PRK06633, acetyl-CoA acetyltransferase; Provisional.
Length = 392
Score = 117 bits (295), Expect = 2e-31
Identities = 51/89 (57%), Positives = 68/89 (76%)
Query: 113 PTLMGTGPIPAVNAVLAKAGWSKEEVDLFELNEAFAAQSIACLRELGLDEAKVNVSGGAI 172
P++MGT P+PA L+KAGWS ++++ E+NEAFAAQSI RE+ D KVN++GGAI
Sbjct: 285 PSIMGTAPVPASQKALSKAGWSVNDLEVIEVNEAFAAQSIYVNREMKWDMEKVNINGGAI 344
Query: 173 ALGHPIGASGTRVLVTLLYALKRLNKSKG 201
A+GHPIGASG RVL+TL++ L+R KG
Sbjct: 345 AIGHPIGASGGRVLITLIHGLRRAKAKKG 373
>gnl|CDD|181146 PRK07851, PRK07851, acetyl-CoA acetyltransferase; Provisional.
Length = 406
Score = 117 bits (296), Expect = 2e-31
Identities = 49/89 (55%), Positives = 64/89 (71%)
Query: 113 PTLMGTGPIPAVNAVLAKAGWSKEEVDLFELNEAFAAQSIACLRELGLDEAKVNVSGGAI 172
P +MG GP+ A LA+AG S +++DL E+NEAFAAQ + RELG+DE K+NVSGGAI
Sbjct: 298 PEIMGLGPVEASKQALARAGMSIDDIDLVEINEAFAAQVLPSARELGIDEDKLNVSGGAI 357
Query: 173 ALGHPIGASGTRVLVTLLYALKRLNKSKG 201
ALGHP G +G R+ TLL L+ +K+ G
Sbjct: 358 ALGHPFGMTGARITTTLLNNLQTHDKTFG 386
>gnl|CDD|181265 PRK08170, PRK08170, acetyl-CoA acetyltransferase; Provisional.
Length = 426
Score = 115 bits (290), Expect = 1e-30
Identities = 68/183 (37%), Positives = 95/183 (51%), Gaps = 34/183 (18%)
Query: 47 VSRDVVEQILTTVSPFLEHPTNRRHALTSRQQVLLTLHWLGNGAQYHITADAHGVSKSTV 106
V D + L + PF + P R A S Q + +GA + + A V K +
Sbjct: 235 VRPDSSMEKLAKLKPFFDRPYGRVTAGNSSQ--------ITDGACWLLLASEEAVKKYGL 286
Query: 107 Q---RTVHK------PTLMGTGPIPAVNAVLAKAGWSKEEVDLFELNEAFAAQSIACLR- 156
R V P+ MG GP+ A +L + G + E++DL+E+NEAFAAQ +ACL
Sbjct: 287 PPLGRIVDSQWAALDPSQMGLGPVHAATPLLQRHGLTLEDLDLWEINEAFAAQVLACLAA 346
Query: 157 ---------ELGLDEA-------KVNVSGGAIALGHPIGASGTRVLVTLLYALKRLNKSK 200
+LGLD A ++NV GGAIALGHP+GASG R+++ LL+ALKR +
Sbjct: 347 WADEEYCREQLGLDGALGELDRERLNVDGGAIALGHPVGASGARIVLHLLHALKRRGTKR 406
Query: 201 GCA 203
G A
Sbjct: 407 GIA 409
>gnl|CDD|236197 PRK08242, PRK08242, acetyl-CoA acetyltransferase; Validated.
Length = 402
Score = 114 bits (289), Expect = 2e-30
Identities = 45/91 (49%), Positives = 63/91 (69%)
Query: 113 PTLMGTGPIPAVNAVLAKAGWSKEEVDLFELNEAFAAQSIACLRELGLDEAKVNVSGGAI 172
PT+M TGP+PA LAKAG + +++DLFELNEAFA+ + ++ L + KVNV+GGAI
Sbjct: 295 PTIMLTGPVPATRKALAKAGLTVDDIDLFELNEAFASVVLRFMQALDIPHDKVNVNGGAI 354
Query: 173 ALGHPIGASGTRVLVTLLYALKRLNKSKGCA 203
A+GHP+GA+G +L T+L L+R K
Sbjct: 355 AMGHPLGATGAMILGTVLDELERRGKRTALI 385
>gnl|CDD|235741 PRK06205, PRK06205, acetyl-CoA acetyltransferase; Provisional.
Length = 404
Score = 114 bits (288), Expect = 2e-30
Identities = 46/86 (53%), Positives = 63/86 (73%), Gaps = 3/86 (3%)
Query: 113 PTLMGTGPIPAVNAVLAKAGWSKEEVDLFELNEAFAAQSIACLRELGL---DEAKVNVSG 169
P+ MG GP+PA LA+AG + +++DL ELNEAFAAQ +A L+E G DE ++NV+G
Sbjct: 293 PSRMGIGPVPATEKALARAGLTLDDIDLIELNEAFAAQVLAVLKEWGFGADDEERLNVNG 352
Query: 170 GAIALGHPIGASGTRVLVTLLYALKR 195
I+LGHP+GA+G R+L TLL L+R
Sbjct: 353 SGISLGHPVGATGGRILATLLRELQR 378
>gnl|CDD|183998 PRK13359, PRK13359, beta-ketoadipyl CoA thiolase; Provisional.
Length = 400
Score = 113 bits (284), Expect = 7e-30
Identities = 58/129 (44%), Positives = 79/129 (61%), Gaps = 26/129 (20%)
Query: 69 RRHALTSRQQVLLTLHWLGNGAQYHITADAHGVSKSTVQRTVHKPTLMGTGPIPAVNAVL 128
RRH L R +VL G++ + V+ P +MG GP PA +L
Sbjct: 271 RRHGLKPRARVL-------------------GIATAGVE-----PRVMGIGPAPATQKLL 306
Query: 129 AKAGWSKEEVDLFELNEAFAAQSIACLRELGL--DEAKVNVSGGAIALGHPIGASGTRVL 186
A+ G + ++ D+ ELNEAFA+Q +A LRELGL D+A+VN +GGAIALGHP+GASG R++
Sbjct: 307 ARLGMTLDQFDVIELNEAFASQGLAVLRELGLADDDARVNPNGGAIALGHPLGASGARLV 366
Query: 187 VTLLYALKR 195
T LY L+R
Sbjct: 367 TTALYQLER 375
>gnl|CDD|181311 PRK08235, PRK08235, acetyl-CoA acetyltransferase; Provisional.
Length = 393
Score = 112 bits (281), Expect = 2e-29
Identities = 46/81 (56%), Positives = 61/81 (75%)
Query: 123 AVNAVLAKAGWSKEEVDLFELNEAFAAQSIACLRELGLDEAKVNVSGGAIALGHPIGASG 182
A+NA+L K G + E++DLFE+NEAFAA ++A G+D KVNV+GGA+ALGHPIGASG
Sbjct: 296 AINALLEKTGKTVEDIDLFEINEAFAAVALASTEIAGIDPEKVNVNGGAVALGHPIGASG 355
Query: 183 TRVLVTLLYALKRLNKSKGCA 203
R++VTL++ LKR G A
Sbjct: 356 ARIIVTLIHELKRRGGGIGIA 376
>gnl|CDD|235675 PRK06025, PRK06025, acetyl-CoA acetyltransferase; Provisional.
Length = 417
Score = 109 bits (275), Expect = 2e-28
Identities = 50/95 (52%), Positives = 68/95 (71%), Gaps = 4/95 (4%)
Query: 113 PTLMGTGPIPAVNAVLAKAGWSKEEVDLFELNEAFAAQSIACLRELGLDEAKVNVSGGAI 172
PTLM P+PA VLAKAG +K+++DL+E+NEAFA + +R+L LD KVNV+GGAI
Sbjct: 310 PTLMLNAPVPAAKKVLAKAGLTKDDIDLWEINEAFAVVAEKFIRDLDLDRDKVNVNGGAI 369
Query: 173 ALGHPIGASGTRVLVTLLYALKRLNKSKG----CA 203
ALGHPIGA+G+ ++ T+L L+R +G CA
Sbjct: 370 ALGHPIGATGSILIGTVLDELERRGLKRGLVTMCA 404
>gnl|CDD|180595 PRK06504, PRK06504, acetyl-CoA acetyltransferase; Provisional.
Length = 390
Score = 109 bits (274), Expect = 2e-28
Identities = 44/91 (48%), Positives = 64/91 (70%)
Query: 111 HKPTLMGTGPIPAVNAVLAKAGWSKEEVDLFELNEAFAAQSIACLRELGLDEAKVNVSGG 170
P +M P+PA L KAG +++DL+E+NEAFA+ +A L+ G D ++NV+GG
Sbjct: 281 GDPVIMLEAPLPATERALKKAGMKIDDIDLYEVNEAFASVPLAWLKATGADPERLNVNGG 340
Query: 171 AIALGHPIGASGTRVLVTLLYALKRLNKSKG 201
AIALGHP+GASGT+++ TL++ALK+ K G
Sbjct: 341 AIALGHPLGASGTKLMTTLVHALKQRGKRYG 371
>gnl|CDD|180563 PRK06445, PRK06445, acetyl-CoA acetyltransferase; Provisional.
Length = 394
Score = 107 bits (270), Expect = 8e-28
Identities = 45/91 (49%), Positives = 62/91 (68%)
Query: 113 PTLMGTGPIPAVNAVLAKAGWSKEEVDLFELNEAFAAQSIACLRELGLDEAKVNVSGGAI 172
P +MG GP+PA L KAG S +++DL+E+NEAFA + ++ELGLD VN+ GGAI
Sbjct: 287 PAIMGKGPVPASKKALEKAGLSVKDIDLWEINEAFAVVVLYAIKELGLDPETVNIKGGAI 346
Query: 173 ALGHPIGASGTRVLVTLLYALKRLNKSKGCA 203
A+GHP+GA+G R++ TL L+ K G A
Sbjct: 347 AIGHPLGATGARIVGTLARQLQIKGKDYGVA 377
>gnl|CDD|181123 PRK07801, PRK07801, acetyl-CoA acetyltransferase; Provisional.
Length = 382
Score = 106 bits (267), Expect = 1e-27
Identities = 44/83 (53%), Positives = 59/83 (71%)
Query: 113 PTLMGTGPIPAVNAVLAKAGWSKEEVDLFELNEAFAAQSIACLRELGLDEAKVNVSGGAI 172
P M T PIPA L K G S +++D+ E+NEAFA +A L+E G D AKVN +GGAI
Sbjct: 275 PVFMLTAPIPATRYALEKTGLSIDDIDVVEINEAFAPVVLAWLKETGADPAKVNPNGGAI 334
Query: 173 ALGHPIGASGTRVLVTLLYALKR 195
ALGHP+GA+G +++ TLL+ L+R
Sbjct: 335 ALGHPLGATGAKLMTTLLHELER 357
>gnl|CDD|215347 PLN02644, PLN02644, acetyl-CoA C-acetyltransferase.
Length = 394
Score = 104 bits (262), Expect = 9e-27
Identities = 45/91 (49%), Positives = 57/91 (62%)
Query: 113 PTLMGTGPIPAVNAVLAKAGWSKEEVDLFELNEAFAAQSIACLRELGLDEAKVNVSGGAI 172
P L T P A+ L AG +VD +E+NEAF+ ++A + LGLD KVNV GGA+
Sbjct: 286 PELFTTAPALAIPKALKHAGLEASQVDYYEINEAFSVVALANQKLLGLDPEKVNVHGGAV 345
Query: 173 ALGHPIGASGTRVLVTLLYALKRLNKSKGCA 203
+LGHPIG SG R+LVTLL L+ N G A
Sbjct: 346 SLGHPIGCSGARILVTLLGVLRSKNGKYGVA 376
>gnl|CDD|223261 COG0183, PaaJ, Acetyl-CoA acetyltransferase [Lipid metabolism].
Length = 392
Score = 104 bits (262), Expect = 1e-26
Identities = 38/80 (47%), Positives = 48/80 (60%), Gaps = 3/80 (3%)
Query: 117 GTGPIPAVNAVLAKAGWSK-EEVDLFELNEAFAAQSIACLRELGLDEAKVNVSGGAIALG 175
GP+ AV+ L AG E++ L E EAFAA ++ + LG VN SGGAIALG
Sbjct: 285 MDGPVAAVHDALTIAGLLALEDLGLAEKGEAFAAVALGVTKILGDL--PVNPSGGAIALG 342
Query: 176 HPIGASGTRVLVTLLYALKR 195
HPIGA+G R+LV L L+
Sbjct: 343 HPIGATGARILVELARQLRG 362
>gnl|CDD|131498 TIGR02445, fadA, fatty oxidation complex, beta subunit FadA. This
subunit of the FadBA complex has acetyl-CoA
C-acyltransferase (EC 2.3.1.16) activity, and is also
known as beta-ketothiolase and fatty oxidation complex,
beta subunit. This protein is almost always located
adjacent to FadB (TIGR02437). The FadBA complex is the
major complex active for beta-oxidation of fatty acids
in E. coli [Fatty acid and phospholipid metabolism,
Degradation].
Length = 385
Score = 103 bits (258), Expect = 3e-26
Identities = 48/94 (51%), Positives = 69/94 (73%), Gaps = 3/94 (3%)
Query: 113 PTLMGTGPIPAVNAVLAKAGWSKEEVDLFELNEAFAAQSIACLRELGLDEA---KVNVSG 169
P++MG GP+PA L +AG S ++D+FELNEAFAAQ++ CL++LGL + KVN++G
Sbjct: 275 PSIMGYGPVPATQKALKRAGLSISDIDVFELNEAFAAQALPCLKDLGLLDKMDEKVNLNG 334
Query: 170 GAIALGHPIGASGTRVLVTLLYALKRLNKSKGCA 203
GAIALGHP+G SG R+ TLL +++ + + G A
Sbjct: 335 GAIALGHPLGCSGARISTTLLNLMEQKDATFGLA 368
>gnl|CDD|181242 PRK08131, PRK08131, acetyl-CoA acetyltransferase; Provisional.
Length = 401
Score = 102 bits (257), Expect = 5e-26
Identities = 42/88 (47%), Positives = 64/88 (72%), Gaps = 2/88 (2%)
Query: 113 PTLMGTGPIPAVNAVLAKAGWSKEEVDLFELNEAFAAQSIACLRELGL--DEAKVNVSGG 170
P +MG GP+ A+ LA+AG + +++D+ E+NEAFA+Q + CL+ LG+ D+ +VN +GG
Sbjct: 291 PRIMGIGPVEAIKKALARAGLTLDDMDIIEINEAFASQVLGCLKGLGVDFDDPRVNPNGG 350
Query: 171 AIALGHPIGASGTRVLVTLLYALKRLNK 198
AIA+GHP+GASG R+ +T L+R K
Sbjct: 351 AIAVGHPLGASGARLALTAARELQRRGK 378
>gnl|CDD|180775 PRK06954, PRK06954, acetyl-CoA acetyltransferase; Provisional.
Length = 397
Score = 102 bits (256), Expect = 6e-26
Identities = 48/92 (52%), Positives = 62/92 (67%)
Query: 113 PTLMGTGPIPAVNAVLAKAGWSKEEVDLFELNEAFAAQSIACLRELGLDEAKVNVSGGAI 172
P+ T P+ A+ + K GW EVDLFE+NEAFA ++A ++E GL KVNV+GGA
Sbjct: 290 PSKFTTAPVGAIRKLFEKNGWRAAEVDLFEINEAFAVVTMAAMKEHGLPHEKVNVNGGAC 349
Query: 173 ALGHPIGASGTRVLVTLLYALKRLNKSKGCAV 204
ALGHPIGASG R+LVTL+ AL+ +G A
Sbjct: 350 ALGHPIGASGARILVTLIGALRARGGKRGVAS 381
>gnl|CDD|181145 PRK07850, PRK07850, acetyl-CoA acetyltransferase; Provisional.
Length = 387
Score = 100 bits (252), Expect = 2e-25
Identities = 40/87 (45%), Positives = 57/87 (65%)
Query: 113 PTLMGTGPIPAVNAVLAKAGWSKEEVDLFELNEAFAAQSIACLRELGLDEAKVNVSGGAI 172
P GP+ A VL KAG ++DL E+NEAFA+ ++ + D KVNV+GGAI
Sbjct: 280 PYYHLDGPVQATAKVLEKAGMKIGDIDLVEINEAFASVVLSWAQVHEPDMDKVNVNGGAI 339
Query: 173 ALGHPIGASGTRVLVTLLYALKRLNKS 199
ALGHP+G++G R++ T L+ L+R +KS
Sbjct: 340 ALGHPVGSTGARLITTALHELERTDKS 366
>gnl|CDD|180659 PRK06690, PRK06690, acetyl-CoA acetyltransferase; Provisional.
Length = 361
Score = 99.1 bits (247), Expect = 1e-24
Identities = 46/91 (50%), Positives = 61/91 (67%)
Query: 113 PTLMGTGPIPAVNAVLAKAGWSKEEVDLFELNEAFAAQSIACLRELGLDEAKVNVSGGAI 172
P L GTGPI AVN +L + E++D FE+NEAFA++ +AC +EL + K+NV+GGAI
Sbjct: 253 PNLPGTGPIFAVNKLLNEMNMKVEDIDYFEINEAFASKVVACAKELQIPYEKLNVNGGAI 312
Query: 173 ALGHPIGASGTRVLVTLLYALKRLNKSKGCA 203
ALGHP GASG ++ L Y KR + G A
Sbjct: 313 ALGHPYGASGAMLVTRLFYQAKREDMKYGIA 343
>gnl|CDD|180843 PRK07108, PRK07108, acetyl-CoA acetyltransferase; Provisional.
Length = 392
Score = 90.2 bits (224), Expect = 2e-21
Identities = 37/74 (50%), Positives = 52/74 (70%)
Query: 112 KPTLMGTGPIPAVNAVLAKAGWSKEEVDLFELNEAFAAQSIACLRELGLDEAKVNVSGGA 171
+P MG GP+ AV +L +AG +++DL+ELNEAFA Q + C LG+ ++NV+GGA
Sbjct: 284 EPDEMGIGPVFAVPKLLKQAGLKVDDIDLWELNEAFAVQVLYCRDTLGIPMDRLNVNGGA 343
Query: 172 IALGHPIGASGTRV 185
IA+GHP G SG R+
Sbjct: 344 IAVGHPYGVSGARL 357
>gnl|CDD|238422 cd00826, nondecarbox_cond_enzymes, nondecarboxylating condensing
enzymes; In general, thiolases catalyze the reversible
thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and
acetyl-CoA, a 2-step reaction involving a covalent
intermediate formed with a catalytic cysteine. There are
2 functional different classes: thiolase-I
(3-ketoacyl-CoA thiolase) and thiolase-II
(acetoacetyl-CoA thiolase). Thiolase-I can cleave longer
fatty acid molecules and plays an important role in the
beta-oxidative degradation of fatty acids. Thiolase-II
has a high substrate specificity. Although it can cleave
acetoacyl-CoA, its main function is the synthesis of
acetoacyl-CoA from two molecules of acetyl-CoA, which
gives it importance in several biosynthetic pathways.
Length = 393
Score = 86.0 bits (212), Expect = 7e-20
Identities = 37/99 (37%), Positives = 48/99 (48%), Gaps = 18/99 (18%)
Query: 115 LMGTGPIPAVNAVLAKAGWSKEEVDLFELNEAFAAQSIACLRELGLDEAK---------- 164
+ G GPI A L KAG ++DL E ++AFAA + A LGL
Sbjct: 266 VGGDGPIEAARKALEKAGLGIGDLDLIEAHDAFAANACATNEALGLCPEGQGGALVDRGD 325
Query: 165 --------VNVSGGAIALGHPIGASGTRVLVTLLYALKR 195
+N +GGAIA+GHPIGASG + L + LK
Sbjct: 326 NTYGGKSIINPNGGAIAIGHPIGASGAAICAELCFELKG 364
>gnl|CDD|102340 PRK06366, PRK06366, acetyl-CoA acetyltransferase; Provisional.
Length = 388
Score = 82.0 bits (202), Expect = 2e-18
Identities = 40/84 (47%), Positives = 54/84 (64%)
Query: 120 PIPAVNAVLAKAGWSKEEVDLFELNEAFAAQSIACLRELGLDEAKVNVSGGAIALGHPIG 179
PIPA +L K S + DL E NEAF+ SI +L +D + NV+GGA+A+GHPIG
Sbjct: 287 PIPATRKLLEKQNKSIDYYDLVEHNEAFSIASIIVRDQLKIDNERFNVNGGAVAIGHPIG 346
Query: 180 ASGTRVLVTLLYALKRLNKSKGCA 203
SG+R++VTL+ ALK + G A
Sbjct: 347 NSGSRIIVTLINALKTRHMKTGLA 370
>gnl|CDD|181597 PRK08963, fadI, 3-ketoacyl-CoA thiolase; Reviewed.
Length = 428
Score = 72.3 bits (178), Expect = 5e-15
Identities = 36/105 (34%), Positives = 57/105 (54%), Gaps = 19/105 (18%)
Query: 108 RTVHKPTLMGTGPIPAVNAVLAKAGWSKEEVDLFELNEAFAAQSIACLR----------E 157
V + L+G P A L +AG + ++ L +++EAFAAQ++A L+ +
Sbjct: 301 IDVWQDMLLG--PAYATPLALERAGLTLADLTLIDMHEAFAAQTLANLQMFASERFAREK 358
Query: 158 LG-------LDEAKVNVSGGAIALGHPIGASGTRVLVTLLYALKR 195
LG +D +K NV GG+IA GHP A+G R++ L+ L+R
Sbjct: 359 LGRSQAIGEVDMSKFNVLGGSIAYGHPFAATGARMITQTLHELRR 403
>gnl|CDD|238201 cd00327, cond_enzymes, Condensing enzymes; Family of enzymes that
catalyze a (decarboxylating or non-decarboxylating)
Claisen-like condensation reaction. Members are share
strong structural similarity, and are involved in the
synthesis and degradation of fatty acids, and the
production of polyketides, a diverse group of natural
products.
Length = 254
Score = 66.7 bits (163), Expect = 2e-13
Identities = 28/87 (32%), Positives = 37/87 (42%), Gaps = 3/87 (3%)
Query: 112 KPTLMGTGPIPAVNAVLAKAGWSKEEVDLFELNEAFAAQSIACLRELGLDEAKV---NVS 168
P + G G A L AG + ++D E + A LGLD V VS
Sbjct: 139 VPAVSGEGLARAARKALEGAGLTPSDIDYVEAHGTGTPIGDAVELALGLDPDGVRSPAVS 198
Query: 169 GGAIALGHPIGASGTRVLVTLLYALKR 195
I GHP+GA+G +L LL L+
Sbjct: 199 ATLIMTGHPLGAAGLAILDELLLMLEH 225
>gnl|CDD|236440 PRK09268, PRK09268, acetyl-CoA acetyltransferase; Provisional.
Length = 427
Score = 66.5 bits (163), Expect = 5e-13
Identities = 38/110 (34%), Positives = 56/110 (50%), Gaps = 23/110 (20%)
Query: 115 LMGTGPIPAVNAVLAKAGWSKEEVDLFELNEAFAAQSIA----------CLRELGLDEA- 163
LM P AV +LA+ G + ++ D +E++EAFA+Q +A C LGLD
Sbjct: 308 LMA--PAYAVPRLLARNGLTLQDFDFYEIHEAFASQVLATLKAWEDEEYCRERLGLDAPL 365
Query: 164 ------KVNVSGGAIALGHPIGASGTRVLVTLLYALKRLNKSKG----CA 203
K+NV+G ++A GHP A+G R++ TL L +G CA
Sbjct: 366 GSIDRSKLNVNGSSLAAGHPFAATGGRIVATLAKLLAEKGSGRGLISICA 415
>gnl|CDD|131499 TIGR02446, FadI, fatty oxidation complex, beta subunit FadI. This
subunit of the FadJI complex has acetyl-CoA
C-acyltransferase (EC 2.3.1.16) activity, and is also
known as beta-ketothiolase and fatty oxidation complex,
beta subunit, and YfcY. This protein is almost always
located adjacent to FadJ (TIGR02440). The FadJI complex
is needed for anaerobic beta-oxidation of short-chain
fatty acids in E. coli [Fatty acid and phospholipid
metabolism, Degradation].
Length = 430
Score = 62.7 bits (152), Expect = 9e-12
Identities = 33/97 (34%), Positives = 50/97 (51%), Gaps = 17/97 (17%)
Query: 116 MGTGPIPAVNAVLAKAGWSKEEVDLFELNEAFAAQSIACLRELG---------------- 159
M GP A L +AG + ++ L +++EAFAAQ++A ++
Sbjct: 309 MLMGPSYATPLALQRAGLALSDLTLIDMHEAFAAQTLANVQMFASDKFAQENLGRSKAMG 368
Query: 160 -LDEAKVNVSGGAIALGHPIGASGTRVLVTLLYALKR 195
+D +K NV GG+IA GHP A+G R++ L LKR
Sbjct: 369 EIDMSKFNVLGGSIAYGHPFAATGARMITQTLRELKR 405
>gnl|CDD|238425 cd00829, SCP-x_thiolase, Thiolase domain associated with sterol
carrier protein (SCP)-x isoform and related proteins;
SCP-2 has multiple roles in intracellular lipid
circulation and metabolism. The N-terminal presequence
in the SCP-x isoform represents a peroxisomal
3-ketacyl-Coa thiolase specific for branched-chain acyl
CoAs, which is proteolytically cleaved from the sterol
carrier protein.
Length = 375
Score = 48.8 bits (117), Expect = 5e-07
Identities = 25/111 (22%), Positives = 43/111 (38%), Gaps = 20/111 (18%)
Query: 99 HGVSKSTVQRTVHKPTLMGTGP--IPAVNAVLAKAGWSKEEVDLFELNEAFAAQSIACLR 156
GV ++ ++ + + A AG + +++D+ EL + F + L
Sbjct: 230 LGVGAASDTPSLSERDDFLSLDAARLAARRAYKMAGITPDDIDVAELYDCFTIAELLALE 289
Query: 157 ELGL---DEAK---------------VNVSGGAIALGHPIGASGTRVLVTL 189
+LG E VN SGG ++ GHP+GA+G V
Sbjct: 290 DLGFCEKGEGGKLVREGDTAIGGDLPVNTSGGLLSKGHPLGATGLAQAVEA 340
>gnl|CDD|235688 PRK06064, PRK06064, acetyl-CoA acetyltransferase; Provisional.
Length = 389
Score = 44.1 bits (105), Expect = 2e-05
Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 18/83 (21%)
Query: 130 KAGWSKEEVDLFELNEAFAAQSIACLRELGLDE----AK--------------VNVSGGA 171
AG +++D+ E+++ F I +LG + K VN SGG
Sbjct: 270 MAGIEPKDIDVAEVHDCFTIAEILAYEDLGFAKKGEGGKLAREGQTYIGGDIPVNPSGGL 329
Query: 172 IALGHPIGASGTRVLVTLLYALK 194
A GHP+GA+G V +++ L+
Sbjct: 330 KAKGHPVGATGVSQAVEIVWQLR 352
>gnl|CDD|235771 PRK06289, PRK06289, acetyl-CoA acetyltransferase; Provisional.
Length = 403
Score = 43.5 bits (103), Expect = 3e-05
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 18/83 (21%)
Query: 123 AVNAVLAKAGWSKEEVDLFELNEAFAAQSIACLRELGLDEA------------------K 164
AV +AG +++D FE+++ F + +GL
Sbjct: 281 AVLDAYRRAGVGLDDLDGFEVHDCFTPSEYLAIDHIGLTGPGESWKAIENGEIAIGGRLP 340
Query: 165 VNVSGGAIALGHPIGASGTRVLV 187
+N SGG I GHP+GASG R+L+
Sbjct: 341 INPSGGLIGGGHPVGASGVRMLL 363
>gnl|CDD|235785 PRK06365, PRK06365, acetyl-CoA acetyltransferase; Provisional.
Length = 430
Score = 42.6 bits (100), Expect = 7e-05
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 18/76 (23%)
Query: 136 EEVDLFELNEAFAAQSIACLRELGL----------DEAK--------VNVSGGAIALGHP 177
++DL EL++A+ + I +LGL + K VN SGG +A GH
Sbjct: 313 NDLDLIELHDAYTSSEIQTYEDLGLCKYGEGGQFIESGKPELPGKLPVNPSGGLLAAGHA 372
Query: 178 IGASGTRVLVTLLYAL 193
+GA+G V + + L
Sbjct: 373 VGATGIMQAVFMFWQL 388
>gnl|CDD|181327 PRK08256, PRK08256, lipid-transfer protein; Provisional.
Length = 391
Score = 41.0 bits (97), Expect = 2e-04
Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 18/78 (23%)
Query: 123 AVNAVLAKAGWSKEEVDLFELNEAFAAQSIACLRELGL----DEAK-------------- 164
A V +AG E++D+ EL++ F+A + LGL + K
Sbjct: 269 AAQQVYEQAGIGPEDIDVVELHDCFSANELLTYEALGLCPEGEAEKFIDDGDNTYGGRWV 328
Query: 165 VNVSGGAIALGHPIGASG 182
VN SGG ++ GHP+GA+G
Sbjct: 329 VNPSGGLLSKGHPLGATG 346
>gnl|CDD|222263 pfam13613, DDE_4_2, DDE superfamily endonuclease. This family of
proteins are related to pfam00665 and are probably
endonucleases of the DDE superfamily. Transposase
proteins are necessary for efficient DNA transposition.
This domain is a member of the DDE superfamily, which
contain three carboxylate residues that are believed to
be responsible for coordinating metal ions needed for
catalysis. The catalytic activity of this enzyme
involves DNA cleavage at a specific site followed by a
strand transfer reaction.
Length = 95
Score = 38.1 bits (89), Expect = 4e-04
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 69 RRHALTSRQQVLLTLHWL-GNGAQYHITADAHGVSKSTVQRTVHK--PTLMGTGPI 121
R+ L+ Q+LLTL +L HI A G+S+ST R +HK L+ +GP
Sbjct: 9 RKPKLSLEDQLLLTLVYLREYRTYEHIAAS-FGISESTANRIIHKVEDILIKSGPF 63
>gnl|CDD|223381 COG0304, FabB, 3-oxoacyl-(acyl-carrier-protein) synthase [Lipid
metabolism / Secondary metabolites biosynthesis,
transport, and catabolism].
Length = 412
Score = 38.0 bits (89), Expect = 0.002
Identities = 30/98 (30%), Positives = 40/98 (40%), Gaps = 25/98 (25%)
Query: 92 YHITADAHGVSKSTVQRTVHKPTLMGTGPIPAVNAVLAKAGWSKEEVDLFELN------- 144
YHITA P G G I A+ A LA AG + E++D +N
Sbjct: 266 YHITA----------------PAPDGEGAIRAMRAALADAGLTPEDIDY--INAHGTSTP 307
Query: 145 EAFAAQSIACLRELGLDEAKVNVSGGAIALGHPIGASG 182
A+S+A R G + VS GH +GA+G
Sbjct: 308 ANDKAESLAIKRVFGEHAKSLPVSSTKSLTGHTLGAAG 345
>gnl|CDD|240424 PTZ00455, PTZ00455, 3-ketoacyl-CoA thiolase; Provisional.
Length = 438
Score = 37.2 bits (86), Expect = 0.004
Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 18/80 (22%)
Query: 123 AVNAVLAKAGWSKEEVDLFELNEAFAAQSIACLRELGLDE---AK--------------- 164
A L+ AG ++ + E+++ F + LG+ E AK
Sbjct: 314 AAQKALSMAGVKPSDLQVAEVHDCFTIAELLMYEALGIAEYGHAKDLIRNGATALEGRIP 373
Query: 165 VNVSGGAIALGHPIGASGTR 184
VN GG ++ GHP+GA+G +
Sbjct: 374 VNTGGGLLSFGHPVGATGVK 393
>gnl|CDD|181173 PRK07937, PRK07937, lipid-transfer protein; Provisional.
Length = 352
Score = 36.6 bits (85), Expect = 0.005
Identities = 23/55 (41%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 129 AKAGWSKEEVDLFELNEAFAAQSIACLRELGL-DEAKVNVSGGAIALGHPIGASG 182
A G VD+ EL+ F Q + LGL D+ KVN SGGA+A +P+ A+G
Sbjct: 258 AATGGDAGGVDVAELHAPFTHQELILREALGLGDKTKVNPSGGALA-ANPMFAAG 311
>gnl|CDD|180433 PRK06157, PRK06157, acetyl-CoA acetyltransferase; Validated.
Length = 398
Score = 36.5 bits (85), Expect = 0.006
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 18/70 (25%)
Query: 135 KEEVDLFELNEAFAAQSIACLRELGLDEA------------------KVNVSGGAIALGH 176
+EE+ + E+++ F+ + + +LGL E + GG GH
Sbjct: 285 REELSMAEVHDCFSITELVTMEDLGLSERGQAWRDVLDGFFDADGGLPCQIDGGLKCFGH 344
Query: 177 PIGASGTRVL 186
PIGASG R+L
Sbjct: 345 PIGASGLRML 354
>gnl|CDD|235653 PRK05952, PRK05952, 3-oxoacyl-(acyl carrier protein) synthase II;
Reviewed.
Length = 381
Score = 35.8 bits (83), Expect = 0.010
Identities = 31/107 (28%), Positives = 44/107 (41%), Gaps = 21/107 (19%)
Query: 95 TADAHGVSKSTVQRTVHKPTLMGTGPIPAVNAVLAKAGWSKEEVDLF-------ELNEAF 147
T DA+ +S P G I A+ LA++G + E++D LN+
Sbjct: 240 TCDAYHMSA---------PEPDGKSAIAAIQQCLARSGLTPEDIDYIHAHGTATRLNDQR 290
Query: 148 AAQSIACLRELGLDEAKVNVSGGAIALGHPIGASGTRVLVTLLYALK 194
A I L +V VS A GH +GASG + L AL+
Sbjct: 291 EANLIQALFP-----HRVAVSSTKGATGHTLGASGALGVAFSLLALR 332
>gnl|CDD|181013 PRK07516, PRK07516, acetyl-CoA acetyltransferase; Provisional.
Length = 389
Score = 35.7 bits (83), Expect = 0.011
Identities = 28/85 (32%), Positives = 38/85 (44%), Gaps = 24/85 (28%)
Query: 119 GPIPAVNAVLAKAGWSKEEVDLFELNEAFAAQSIACLRE---LGLDEA------------ 163
GP A LA+AG + +++ E ++ F +IA L E +GL
Sbjct: 261 GPRRAWQRALAQAGVTLDDLSFVETHDCF---TIAELIEYEAMGLAPPGQGARAIREGWT 317
Query: 164 ------KVNVSGGAIALGHPIGASG 182
VN SGG A GHPIGA+G
Sbjct: 318 AKDGKLPVNPSGGLKAKGHPIGATG 342
>gnl|CDD|200247 TIGR03150, fabF, beta-ketoacyl-acyl-carrier-protein synthase II.
3-oxoacyl-[acyl-carrier-protein] synthase 2 (KAS-II,
FabF) is involved in the condensation step of fatty acid
biosynthesis in which the malonyl donor group is
decarboxylated and the resulting carbanion used to
attack and extend the acyl group attached to the acyl
carrier protein. Most genomes encoding fatty acid
biosynthesis contain a number of condensing enzymes,
often of all three types: 1, 2 and 3. Synthase 2 is
mechanistically related to synthase 1 (KAS-I, FabB)
containing a number of absolutely conserved catalytic
residues in common. This model is based primarily on
genes which are found in apparent operons with other
essential genes of fatty acid biosynthesis
(GenProp0681). The large gap between the trusted cutoff
and the noise cutoff contains many genes which are not
found adjacent to genes of the fatty acid pathway in
genomes that often also contain a better hit to this
model. These genes may be involved in other processes
such as polyketide biosyntheses. Some genomes contain
more than one above-trusted hit to this model which may
result from recent paralogous expansions. Second hits to
this model which are not next to other fatty acid
biosynthesis genes may be involved in other processes.
FabB sequences should fall well below the noise cutoff
of this model [Fatty acid and phospholipid metabolism,
Biosynthesis].
Length = 407
Score = 32.8 bits (76), Expect = 0.098
Identities = 28/101 (27%), Positives = 37/101 (36%), Gaps = 31/101 (30%)
Query: 92 YHITADAHGVSKSTVQRTVHKPTLMGTGPIPAVNAVLAKAGWSKEEVD----------LF 141
YHITA P G G A+ A L AG + E+VD L
Sbjct: 265 YHITA----------------PAPEGEGAARAMRAALKDAGINPEDVDYINAHGTSTPLG 308
Query: 142 ELNEAFAAQSIACLRELGLDEAKVNVSGGAIALGHPIGASG 182
+ E A + + G K+ VS GH +GA+G
Sbjct: 309 DKAETKAIKRV-----FGDHAYKLAVSSTKSMTGHLLGAAG 344
>gnl|CDD|223409 COG0332, FabH, 3-oxoacyl-[acyl-carrier-protein].
Length = 323
Score = 32.6 bits (75), Expect = 0.10
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 123 AVNAVLAKAGWSKEEVDLFELNEAFAAQSIACLRE-LGLDEAKVNV 167
A+ VL KAG + E++D F ++A + I + + LG+ E KV V
Sbjct: 228 AIEEVLEKAGLTPEDIDWFVPHQA-NLRIIEAIAKKLGIPEEKVVV 272
>gnl|CDD|180380 PRK06066, PRK06066, acetyl-CoA acetyltransferase; Provisional.
Length = 385
Score = 32.4 bits (74), Expect = 0.15
Identities = 25/97 (25%), Positives = 41/97 (42%), Gaps = 21/97 (21%)
Query: 128 LAKAGWSKEEVDLFELNEAFAAQSIACLRELGLD------------------EAKVNVSG 169
+A ++EVD E+++ ++ + + + L L E VN SG
Sbjct: 268 MAGIESPRKEVDAAEVDDRYSYKELQHIEALRLSEEPEKDSLLREGNFDPQGELPVNPSG 327
Query: 170 GAIALGHPIGASGTRVLVTLLYALKRLNKSKGCAVDE 206
G +A G P+ ASG L LL A++ L G +
Sbjct: 328 GHLAKGVPLEASG---LSLLLDAVEYLRGEAGARQGK 361
>gnl|CDD|100119 cd06171, Sigma70_r4, Sigma70, region (SR) 4 refers to the most
C-terminal of four conserved domains found in
Escherichia coli (Ec) sigma70, the main housekeeping
sigma, and related sigma-factors (SFs). A SF is a
dissociable subunit of RNA polymerase, it directs
bacterial or plastid core RNA polymerase to specific
promoter elements located upstream of transcription
initiation points. The SR4 of Ec sigma70 and other
essential primary SFs contact promoter sequences located
35 base-pairs upstream of the initiation point,
recognizing a 6-base-pair -35 consensus TTGACA. Sigma70
related SFs also include SFs which are dispensable for
bacterial cell growth for example Ec sigmaS, SFs which
activate regulons in response to a specific signal for
example heat-shock Ec sigmaH, and a group of SFs which
includes the extracytoplasmic function (ECF) SFs and is
typified by Ec sigmaE which contains SR2 and -4 only.
ECF SFs direct the transcription of genes that regulate
various responses including periplasmic stress and
pathogenesis. Ec sigmaE SR4 also contacts the -35
element, but recognizes a different consensus (a
7-base-pair GGAACTT). Plant SFs recognize sigma70 type
promoters and direct transcription of the major plastid
RNA polymerase, plastid-encoded RNA polymerase (PEP).
Length = 55
Score = 29.0 bits (66), Expect = 0.26
Identities = 11/42 (26%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 71 HALTSRQQVLLTLHWLGNGAQYHITADAHGVSKSTVQRTVHK 112
L R++ ++ L + + I A+ G+S+STV++ +H+
Sbjct: 9 DKLPEREREVILLRFGEGLSYEEI-AEILGISRSTVRQRLHR 49
>gnl|CDD|238426 cd00830, KAS_III, Ketoacyl-acyl carrier protein synthase III
(KASIII) initiates the elongation in type II fatty acid
synthase systems. It is found in bacteria and plants.
Elongation of fatty acids in the type II systems occurs
by Claisen condensation of malonyl-acyl carrier protein
(ACP) with acyl-ACP. KASIII initiates this process by
specifically using acetyl-CoA over acyl-CoA.
Length = 320
Score = 31.4 bits (72), Expect = 0.26
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 122 PAVNAVLAKAGWSKEEVDLFELNEAFAAQSIACLRE-LGLDEAKVNV 167
++ L KAG + +++D F ++A + I + + LGL E KV V
Sbjct: 227 ESIEEALEKAGLTPDDIDWFVPHQA-NLRIIEAVAKRLGLPEEKVVV 272
>gnl|CDD|235987 PRK07314, PRK07314, 3-oxoacyl-(acyl carrier protein) synthase II;
Reviewed.
Length = 411
Score = 30.9 bits (71), Expect = 0.38
Identities = 26/98 (26%), Positives = 35/98 (35%), Gaps = 25/98 (25%)
Query: 92 YHITADAHGVSKSTVQRTVHKPTLMGTGPIPAVNAVLAKAGWSKEEVDLF-------ELN 144
YH+TA P G G A+ L AG + E++D
Sbjct: 266 YHMTA----------------PAPDGEGAARAMKLALKDAGINPEDIDYINAHGTSTPAG 309
Query: 145 EAFAAQSIACLRELGLDEAKVNVSGGAIALGHPIGASG 182
+ Q+I R G KV VS GH +GA+G
Sbjct: 310 DKAETQAIK--RVFGEHAYKVAVSSTKSMTGHLLGAAG 345
>gnl|CDD|117118 pfam08541, ACP_syn_III_C, 3-Oxoacyl-[acyl-carrier-protein (ACP)]
synthase III C terminal. This domain is found on
3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
EC:2.3.1.41, the enzyme responsible for initiating the
chain of reactions of the fatty acid synthase in plants
and bacteria.
Length = 90
Score = 29.4 bits (67), Expect = 0.40
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 128 LAKAGWSKEEVDLFELNEAFAAQSIACLRELGLDEAKV 165
L KAG + +++D F ++A A + LGL KV
Sbjct: 1 LEKAGLTPDDIDWFVPHQANLRIIDAVAKRLGLPPEKV 38
>gnl|CDD|238430 cd00834, KAS_I_II, Beta-ketoacyl-acyl carrier protein (ACP)
synthase (KAS), type I and II. KASs are responsible for
the elongation steps in fatty acid biosynthesis. KASIII
catalyses the initial condensation and KAS I and II
catalyze further elongation steps by Claisen
condensation of malonyl-acyl carrier protein (ACP) with
acyl-ACP.
Length = 406
Score = 30.2 bits (69), Expect = 0.67
Identities = 34/100 (34%), Positives = 41/100 (41%), Gaps = 29/100 (29%)
Query: 92 YHITADAHGVSKSTVQRTVHKPTLMGTGPIPAVNAVLAKAGWSKEEVDLF-------ELN 144
YHITA P G G A+ A LA AG S E++D LN
Sbjct: 265 YHITA----------------PDPDGEGAARAMRAALADAGLSPEDIDYINAHGTSTPLN 308
Query: 145 EAFAAQSIACLRELGLDEAKVNVSG--GAIALGHPIGASG 182
+ AA+S A R G KV VS GH +GA+G
Sbjct: 309 D--AAESKAIKRVFGEHAKKVPVSSTKSMT--GHLLGAAG 344
>gnl|CDD|236475 PRK09352, PRK09352, 3-oxoacyl-(acyl carrier protein) synthase III;
Reviewed.
Length = 319
Score = 30.0 bits (69), Expect = 0.76
Identities = 12/51 (23%), Positives = 19/51 (37%), Gaps = 14/51 (27%)
Query: 122 PAVNAVLAKAGWSKEEVDLF-------ELNEAFAAQSIACLRELGLDEAKV 165
L AG + E++D + +A A ++LGL KV
Sbjct: 223 KVAREALEAAGLTPEDIDWLVPHQANLRIIDATA-------KKLGLPMEKV 266
>gnl|CDD|180434 PRK06158, PRK06158, thiolase; Provisional.
Length = 384
Score = 29.6 bits (67), Expect = 1.0
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Query: 129 AKAGWSKEEVDLFELNEAFAAQSIACLRELGL---DEAKVNVSGGAIALG 175
A AG + ++D+ EL +AF +I L +LG E V GG IA G
Sbjct: 265 AMAGLTPADIDVVELYDAFTINTILFLEDLGFCAKGEGGAFVEGGRIAPG 314
>gnl|CDD|215643 PLN03241, PLN03241, magnesium chelatase subunit H; Provisional.
Length = 1315
Score = 29.8 bits (67), Expect = 1.2
Identities = 13/19 (68%), Positives = 14/19 (73%)
Query: 119 GPIPAVNAVLAKAGWSKEE 137
GP PAV AVL+K G KEE
Sbjct: 180 GPPPAVKAVLSKFGSGKEE 198
>gnl|CDD|181732 PRK09258, PRK09258, 3-oxoacyl-(acyl carrier protein) synthase III;
Reviewed.
Length = 338
Score = 29.1 bits (66), Expect = 1.4
Identities = 17/41 (41%), Positives = 25/41 (60%)
Query: 125 NAVLAKAGWSKEEVDLFELNEAFAAQSIACLRELGLDEAKV 165
A LA+ GW+ E+VD ++ AA + A L+ LG+D KV
Sbjct: 246 EAFLAQLGWAVEQVDRVICHQVGAAHTRAILKALGIDPEKV 286
>gnl|CDD|234065 TIGR02937, sigma70-ECF, RNA polymerase sigma factor, sigma-70
family. This model encompasses all varieties of the
sigma-70 type sigma factors including the ECF subfamily.
A number of sigma factors have names with a different
number than 70 (i.e. sigma-38), but in fact, all except
for the Sigma-54 family (TIGR02395) are included within
this family. Several PFAM models hit segments of these
sequences including Sigma-70 region 2 (pfam04542) and
Sigma-70, region 4 (pfam04545), but not always above
their respective trusted cutoffs.
Length = 158
Score = 28.5 bits (64), Expect = 1.7
Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 72 ALTSRQQVLLTLHWLGNGAQYHITADAHGVSKSTVQRTVHK 112
L R++ +L L +L + I A+ G+S TV+R + +
Sbjct: 110 KLPEREREVLVLRYLEGLSYKEI-AEILGISVGTVKRRLKR 149
>gnl|CDD|188459 TIGR03944, dehyd_SbnB_fam, 2,3-diaminopropionate biosynthesis
protein SbnB. Members of this protein family are
probable NAD-dependent dehydrogenases related to the
alanine dehydrogenase of Archaeoglobus fulgidus (see
TIGR02371, PDB structure 1OMO and PMID:15313611) and
more distantly to ornithine cyclodeaminase. Members
include the staphylobactin biosynthesis protein SbnB and
tend to occur in contexts suggesting non-ribosomal
peptide synthesis, always adjacent to (occasionally
fused with) a pyridoxal phosphate-dependent enzyme,
SbnA. The pair appears to provide 2,3-diaminopropionate
for biosynthesis of siderophores or other secondary
metabolites [Cellular processes, Biosynthesis of natural
products].
Length = 327
Score = 29.1 bits (66), Expect = 1.8
Identities = 18/63 (28%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
Query: 115 LMGTGPIPA-VNAVLAKAGWSKEEVDLFELNEAFAAQSIACLRELGLDEAKVNVSGGAIA 173
++G GPI + L G V L++L+ A A A +ELG + V S A
Sbjct: 137 IIGCGPIAREILRFLLALGPEIRRVVLYDLDPARAEAFAARCQELGPGKVTVAASAEAAL 196
Query: 174 LGH 176
Sbjct: 197 RQA 199
>gnl|CDD|183606 PRK12578, PRK12578, acetyl-CoA acetyltransferase; Provisional.
Length = 385
Score = 28.7 bits (64), Expect = 2.3
Identities = 23/98 (23%), Positives = 41/98 (41%), Gaps = 23/98 (23%)
Query: 123 AVNAVLAKAGWSKEEVDLFELNEAFAAQSIACLRELGLDE------------------AK 164
A A + ++++ +++AF I +LG E
Sbjct: 262 AARQAYNMAKVTPNDIEVATVHDAFTIAEIMGYEDLGFTEKGKGGKFIEEGQSEKGGKVG 321
Query: 165 VNVSGGAIALGHPIGASGTRVLVTLLYAL-KRLNKSKG 201
VN+ GG A GHP+GA+G ++++Y + K+L G
Sbjct: 322 VNLFGGLKAKGHPLGATG----LSMIYEITKQLRDEAG 355
>gnl|CDD|152551 pfam12116, SpoIIID, Stage III sporulation protein D. This stage
III sporulation protein is a small DNA-binding family
that is essential for gene expression of the mother-cell
compartment during sporulation. The domain is found in
bacteria and viruses, and is about 40 amino acids in
length. It has a conserved RGG sequence motif.
Length = 82
Score = 26.9 bits (60), Expect = 2.3
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 7/36 (19%)
Query: 95 TADAHGVSKSTVQRTVHKPTLMGTGPIPAVNAVLAK 130
A GVSKSTV + V T +P +N LAK
Sbjct: 25 AAKVFGVSKSTVHKDV-------TERLPKINPQLAK 53
>gnl|CDD|222091 pfam13384, HTH_23, Homeodomain-like domain.
Length = 50
Score = 26.1 bits (58), Expect = 2.4
Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Query: 76 RQQVLLTLHWLGNGAQYHITADAHGVSKSTVQRTVHK 112
R ++LL L G A+ GVS+ TV R + +
Sbjct: 7 RAEILLLLA---EGLSVKEIAELLGVSRRTVYRWLKR 40
>gnl|CDD|132324 TIGR03281, methan_mark_12, putative methanogenesis marker protein
12. Members of this protein family, to date, are found
in a completed prokaryotic genome if and only if the
species is one of the archaeal methanogens. The exact
function is unknown, but likely is linked to
methanogenesis or a process closely connected to it
[Energy metabolism, Methanogenesis].
Length = 326
Score = 28.2 bits (63), Expect = 3.0
Identities = 25/97 (25%), Positives = 34/97 (35%), Gaps = 8/97 (8%)
Query: 112 KPTLMGTGPIPAVNAVLAKAGW---SKEEVDLFELNEAFAAQSIACLRELGLDEAKVNVS 168
K G A +L + +D + A IA L L EA V ++
Sbjct: 213 KIACADKGVENAKEEILNNYNGDEPGRLALDSLAM---SVAMEIASLGLLDCKEAGVVLA 269
Query: 169 GGAIALGHPIGASG--TRVLVTLLYALKRLNKSKGCA 203
G L PI SG RVL + L + + G A
Sbjct: 270 GSGGTLREPINFSGKIKRVLSCKVLVLDSESAAIGLA 306
>gnl|CDD|213304 cd05938, hsFATP2a_ACSVL_like, Fatty acid transport proteins (FATP)
including hsFATP2, hsFATP5, and hsFATP6, and similar
proteins. Fatty acid transport proteins (FATP) of this
family transport long-chain or very-long-chain fatty
acids across the plasma membrane. At least five copies
of FATPs are identified in mammalian cells. This family
includes hsFATP2, hsFATP5, and hsFATP6, and similar
proteins. Each FATP has unique patterns of tissue
distribution. These FATPs also have fatty acid CoA
synthetase activity, thus playing dual roles as fatty
acid transporters and its activation enzymes. The hsFATP
proteins exist in two splice variants; the b variant,
lacking exon 3, has no acyl-CoA synthetase activity.
FATPs are key players in the trafficking of exogenous
fatty acids into the cell and in intracellular fatty
acid homeostasis.
Length = 535
Score = 28.1 bits (63), Expect = 3.2
Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Query: 126 AVLAKAGWSK-EEVDLFELNEAFAAQSIACLRELGLDEAKVNVSGGAIALGHPIGASGTR 184
A+LA AG + V L NE L +LG A +N + + +L H G R
Sbjct: 19 ALLAHAGLKPGDTVALLLGNEPAFLWIWLGLAKLGCPTAFLNTNIRSGSLLHCFRCCGAR 78
Query: 185 VLVT 188
VLV
Sbjct: 79 VLVA 82
>gnl|CDD|188254 TIGR02845, spore_V_AD, stage V sporulation protein AD. Bacillus
and Clostridium species contain about 10 % dipicolinic
acid (pyridine-2,6-dicarboxylic acid) by weight. This
protein family, SpoVAD, belongs to the spoVA operon that
is suggested to act in the transport of dipicolinic acid
(DPA) from the mother cell, where DPA is synthesized, to
the forespore, a process essential to sporulation.
Members of this protein family are found, so far, in
exactly those species believed capable of endospore
formation [Cellular processes, Sporulation and
germination].
Length = 327
Score = 27.7 bits (62), Expect = 4.3
Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 6/42 (14%)
Query: 123 AVNAVLAKAGWSKEEVDLF----ELNEAFAAQSIACLRELGL 160
AVN L KA +K++VDLF LN+ A +A R+LG+
Sbjct: 57 AVNLALQKANLTKDDVDLFLAGDLLNQIITANFVA--RDLGI 96
>gnl|CDD|180757 PRK06930, PRK06930, positive control sigma-like factor; Validated.
Length = 170
Score = 27.4 bits (61), Expect = 4.6
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 72 ALTSRQQVLLTLHWLGNGAQYHITADAHGVSKSTVQRTVHK 112
LT R++ + +H G G Y AD + KSTVQ + +
Sbjct: 114 VLTEREKEVYLMH-RGYGLSYSEIADYLNIKKSTVQSMIER 153
>gnl|CDD|236108 PRK07824, PRK07824, O-succinylbenzoic acid--CoA ligase;
Provisional.
Length = 358
Score = 27.7 bits (62), Expect = 4.8
Identities = 14/29 (48%), Positives = 15/29 (51%)
Query: 160 LDEAKVNVSGGAIALGHPIGASGTRVLVT 188
LD +V V G IALG P A G R V
Sbjct: 198 LDGVRVRVEDGRIALGGPTLAKGYRNPVD 226
>gnl|CDD|235492 PRK05480, PRK05480, uridine/cytidine kinase; Provisional.
Length = 209
Score = 27.4 bits (62), Expect = 4.9
Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 23/54 (42%)
Query: 40 IFV-----ERF--RVSRDVVE----------QILTTVSP----FLEHPTNRRHA 72
IFV R R+ RDV E Q L+TV P F+E P+ +R+A
Sbjct: 130 IFVDTPLDIRLIRRLKRDVNERGRSLESVINQYLSTVRPMHLQFIE-PS-KRYA 181
>gnl|CDD|183528 PRK12440, PRK12440, acetate kinase; Reviewed.
Length = 397
Score = 27.5 bits (61), Expect = 5.0
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Query: 77 QQVLLTLHWLGNGAQYHITADAHGVSKSTVQRTVHKPTLMGT--GPI-PAVNAVLAKAGW 133
+ +++H LGNGA + V S + T +MGT G + P + L K GW
Sbjct: 200 ESSFISVH-LGNGASVCAIKNGQSVDTS-MGFTPLSGLMMGTRCGDLDPGIIEFLLKKGW 257
Query: 134 SKEEV 138
S+E+V
Sbjct: 258 SQEKV 262
>gnl|CDD|214008 cd12809, Esterase_713_like-2, Uncharacterized enzymes similar to
novel bacterial esterase that cleaves esters on
halogenated cyclic compounds. This family contains
uncharacterized proteins similar to a novel bacterial
esterase (Alcaligenes esterase 713) with the alpha/beta
hydrolase fold but does not contain the GXSXXG
pentapeptide around the active site serine residue as
commonly seen in other enzymes of this class. Esterase
713 shows negligible sequence homology to other esterase
and lipase enzymes. It is active as a dimer and cleaves
esters on halogenated cyclic compounds though its
natural substrate is unknown.
Length = 280
Score = 27.6 bits (62), Expect = 5.1
Identities = 10/47 (21%), Positives = 15/47 (31%), Gaps = 3/47 (6%)
Query: 25 QVFRARVNFNTANDFIFVERFRVSRDVVEQILTTVSPFLEHPTNRRH 71
Q R R +N + + VEQ T + P + H
Sbjct: 81 QPGRGRSPWNPEVGGPLAA---STAETVEQRFTAPERYNLWPQAKLH 124
>gnl|CDD|226202 COG3677, COG3677, Transposase and inactivated derivatives [DNA
replication, recombination, and repair].
Length = 129
Score = 26.6 bits (59), Expect = 5.7
Identities = 11/46 (23%), Positives = 17/46 (36%), Gaps = 2/46 (4%)
Query: 67 TNRRHALTSRQQVLLTLHWLGNGAQYHITADAHGVSKSTVQRTVHK 112
+ AL + +TL G A G+S +TV R +
Sbjct: 69 SPLSKALYKIKLQAVTL--YMLGLGIRDIARTLGISINTVNRWSKR 112
>gnl|CDD|200016 TIGR00454, TIGR00454, TIGR00454 family protein. At this time this
gene appears to be present only in Archea [Hypothetical
proteins, Conserved].
Length = 175
Score = 26.8 bits (59), Expect = 6.0
Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 112 KPTLMGTGPIPA-VNAVLAKAGWSKEEVDLFELNEAFAAQSIA 153
P++ G +PA VN V +K G+ +EE+ +
Sbjct: 132 NPSIDFNGLVPAGVNIVSSKNGYQEEEIYSVIDELIVNINTKD 174
>gnl|CDD|236204 PRK08257, PRK08257, acetyl-CoA acetyltransferase; Validated.
Length = 498
Score = 27.2 bits (61), Expect = 6.9
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 123 AVNAVLAKAGWSKEEVDLFELNEAFA-AQSIACLRELGLD 161
A LA AG +++D F+L F A +A RELGLD
Sbjct: 297 AGRRALALAGLGIDDIDAFDLYSCFPSAVQVAA-RELGLD 335
>gnl|CDD|216132 pfam00814, Peptidase_M22, Glycoprotease family. The Peptidase M22
proteins are part of the HSP70-actin superfamily. The
region represented here is an insert into the fold and
is not found in the rest of the family (beyond the
Peptidase M22 family). Included in this family are the
Rhizobial NodU proteins and the HypF regulator. This
region also contains the histidine dyad believed to
coordinate the metal ion and hence provide catalytic
activity. Interestingly the histidines are not well
conserved, and there is a lack of experimental evidence
to support peptidase activity as a general property of
this family. There also appear to be instances of this
domain outside of the HSP70-actin superfamily.
Length = 271
Score = 27.0 bits (60), Expect = 6.9
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 11/60 (18%)
Query: 121 IPAVNAVLAKAGWSKEEVDLFELNEAFAAQ--SIACLRELGLDEAKVNVSGGAIALGHPI 178
+P + LA+AG S E++D A A LR +G AK G A+AL P+
Sbjct: 34 LPLIEEALAEAGLSLEDLDAI----AVTAGPGLFTGLR-VGATFAK----GLALALDKPL 84
>gnl|CDD|219074 pfam06533, DUF1110, Protein of unknown function (DUF1110). This
family consists of hypothetical proteins specific to
Oryza sativa. One sequence appears to be tandemly
repeated.
Length = 151
Score = 26.4 bits (58), Expect = 7.4
Identities = 22/68 (32%), Positives = 27/68 (39%), Gaps = 4/68 (5%)
Query: 25 QVFRARVNFNTANDFIFVERFRVSRDVVEQILTTVSPFLEHPTNRRHALTSRQQVLLTLH 84
+ +RAR VER R S Q L VSP L A +R ++ L L
Sbjct: 4 EAWRARFRERVVEAAQRVERVRESLAAALQHLARVSPMLAGDA----AAAARDRIQLALG 59
Query: 85 WLGNGAQY 92
L G QY
Sbjct: 60 ALELGDQY 67
>gnl|CDD|225107 COG2197, CitB, Response regulator containing a CheY-like receiver
domain and an HTH DNA-binding domain [Signal
transduction mechanisms / Transcription].
Length = 211
Score = 26.9 bits (60), Expect = 8.0
Identities = 14/66 (21%), Positives = 25/66 (37%), Gaps = 4/66 (6%)
Query: 51 VVEQILTTVSPFLEHPTNRRHALTSRQQVLLTLHWLGNGAQYHITADAHGVSKSTVQRTV 110
+ + L + P LT R+ +L L L G A+ +S+ TV+
Sbjct: 127 DIARKLAGLLPSSSAEAPLAELLTPRELEVLRL--LAEGLSNKEIAEELNLSEKTVK--T 182
Query: 111 HKPTLM 116
H ++
Sbjct: 183 HVSNIL 188
>gnl|CDD|221778 pfam12802, MarR_2, MarR family. The Mar proteins are involved in
the multiple antibiotic resistance, a non-specific
resistance system. The expression of the mar operon is
controlled by a repressor, MarR. A large number of
compounds induce transcription of the mar operon. This
is thought to be due to the compound binding to MarR,
and the resulting complex stops MarR binding to the DNA.
With the MarR repression lost, transcription of the
operon proceeds. The structure of MarR is known and
shows MarR as a dimer with each subunit containing a
winged-helix DNA binding motif.
Length = 60
Score = 24.9 bits (55), Expect = 8.1
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 73 LTSRQ-QVLLTLHWLGNGAQYHITADAHGVSKSTVQRTVHK 112
LT Q +VLL L G + A G+SK TV R V +
Sbjct: 3 LTPAQFRVLLALARAGGLTVAEL-ARRLGLSKQTVSRLVKR 42
>gnl|CDD|234934 PRK01286, PRK01286, deoxyguanosinetriphosphate
triphosphohydrolase-like protein; Provisional.
Length = 336
Score = 26.7 bits (60), Expect = 8.5
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 11/43 (25%)
Query: 149 AQSIACLRELGLDEAKVNVSGGAIALGH-----PIGASGTRVL 186
A++IA R L L+E AIALGH P G +G L
Sbjct: 74 ARTIA--RALRLNEDLTE----AIALGHDLGHTPFGHAGEDAL 110
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.133 0.392
Gapped
Lambda K H
0.267 0.0725 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,531,914
Number of extensions: 977519
Number of successful extensions: 1098
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1072
Number of HSP's successfully gapped: 97
Length of query: 207
Length of database: 10,937,602
Length adjustment: 92
Effective length of query: 115
Effective length of database: 6,857,034
Effective search space: 788558910
Effective search space used: 788558910
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.7 bits)