RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10774
(207 letters)
>2vu1_A Acetyl-COA acetyltransferase; acyltransferase, PHB biosynthesis,
thiolase FOL; HET: CSO OPI; 1.51A {Zoogloea ramigera}
PDB: 1nl7_A* 1ou6_A* 2vu0_A* 1m4s_A* 2vu2_A* 2wkv_A*
2wku_A* 1m1t_A 1m3k_A 1m1o_A 1m3z_A* 2vtz_A* 2wl5_A*
2wkt_A* 2wl4_A* 1m4t_A* 2wl6_A 1qfl_A* 1dlv_A* 1dlu_A*
...
Length = 392
Score = 185 bits (472), Expect = 1e-57
Identities = 53/91 (58%), Positives = 66/91 (72%)
Query: 113 PTLMGTGPIPAVNAVLAKAGWSKEEVDLFELNEAFAAQSIACLRELGLDEAKVNVSGGAI 172
P +MGTGPIPA L +AGW ++DL E NEAFAAQ+ A ++LG D + VNV+GGAI
Sbjct: 285 PKVMGTGPIPASRKALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAI 344
Query: 173 ALGHPIGASGTRVLVTLLYALKRLNKSKGCA 203
A+GHPIGASG R+L TLL+ +KR KG A
Sbjct: 345 AIGHPIGASGARILNTLLFEMKRRGARKGLA 375
>4dd5_A Acetyl-COA acetyltransferase; structural genomics, center for
structural genomics of infec diseases, csgid, thiolase;
1.25A {Clostridium difficile}
Length = 396
Score = 185 bits (472), Expect = 2e-57
Identities = 51/91 (56%), Positives = 65/91 (71%)
Query: 113 PTLMGTGPIPAVNAVLAKAGWSKEEVDLFELNEAFAAQSIACLRELGLDEAKVNVSGGAI 172
P +MG GP+PA L A + E++DL E NEAFAAQS+A +R+L +D KVNV+GGAI
Sbjct: 290 PKIMGYGPVPATKKALEAANMTIEDIDLVEANEAFAAQSVAVIRDLNIDMNKVNVNGGAI 349
Query: 173 ALGHPIGASGTRVLVTLLYALKRLNKSKGCA 203
A+GHPIG SG R+L TLLY +KR + G A
Sbjct: 350 AIGHPIGCSGARILTTLLYEMKRRDAKTGLA 380
>1wl4_A Acetyl-coenzyme A acetyltransferase 2; thiolase fold; HET: COA;
1.55A {Homo sapiens} PDB: 1wl5_A
Length = 397
Score = 184 bits (470), Expect = 3e-57
Identities = 57/93 (61%), Positives = 76/93 (81%)
Query: 111 HKPTLMGTGPIPAVNAVLAKAGWSKEEVDLFELNEAFAAQSIACLRELGLDEAKVNVSGG 170
+P++MG GPIPA+ + KAGWS E+VD+FE+NEAFAA S A ++ELGL+ KVN+ GG
Sbjct: 288 VEPSIMGIGPIPAIKQAVTKAGWSLEDVDIFEINEAFAAVSAAIVKELGLNPEKVNIEGG 347
Query: 171 AIALGHPIGASGTRVLVTLLYALKRLNKSKGCA 203
AIALGHP+GASG R+LVTLL+ L+R+ +S+G A
Sbjct: 348 AIALGHPLGASGCRILVTLLHTLERMGRSRGVA 380
>4e1l_A Acetoacetyl-COA thiolase 2; 3-layer(ABA) sandwich, transferase;
2.00A {Clostridium difficile}
Length = 395
Score = 184 bits (470), Expect = 3e-57
Identities = 53/91 (58%), Positives = 67/91 (73%)
Query: 113 PTLMGTGPIPAVNAVLAKAGWSKEEVDLFELNEAFAAQSIACLRELGLDEAKVNVSGGAI 172
P +MGTGPIPA L KAG S ++DL E NEAFAAQ++A EL +D +K+NV+GGAI
Sbjct: 289 PEVMGTGPIPATRKALKKAGLSINDIDLIEANEAFAAQALAVKNELQIDSSKLNVNGGAI 348
Query: 173 ALGHPIGASGTRVLVTLLYALKRLNKSKGCA 203
ALGHPIGASG R+LVTL+Y +++ G A
Sbjct: 349 ALGHPIGASGARILVTLIYEMQKRKVETGLA 379
>3ss6_A Acetyl-COA acetyltransferase; structural genomics, csgid, center
for structural genomics O infectious diseases, alpha
beta; HET: CSO; 1.70A {Bacillus anthracis}
Length = 394
Score = 181 bits (463), Expect = 3e-56
Identities = 48/91 (52%), Positives = 61/91 (67%)
Query: 113 PTLMGTGPIPAVNAVLAKAGWSKEEVDLFELNEAFAAQSIACLRELGLDEAKVNVSGGAI 172
P +MG GP PA+ L K WS E+ DL E+NEAFAAQ +A +EL LD KVNV+G +
Sbjct: 287 PKIMGIGPAPAIRKGLEKVDWSLEDADLLEINEAFAAQYLAVEKELDLDREKVNVNGSGV 346
Query: 173 ALGHPIGASGTRVLVTLLYALKRLNKSKGCA 203
LGHPIG +G R+ V+L++ LKR KG A
Sbjct: 347 GLGHPIGCTGARITVSLIHELKRRGLEKGIA 377
>1afw_A 3-ketoacetyl-COA thiolase; fatty acid metabolism; 1.80A
{Saccharomyces cerevisiae} SCOP: c.95.1.1 c.95.1.1 PDB:
1pxt_A
Length = 393
Score = 170 bits (434), Expect = 7e-52
Identities = 42/83 (50%), Positives = 59/83 (71%)
Query: 113 PTLMGTGPIPAVNAVLAKAGWSKEEVDLFELNEAFAAQSIACLRELGLDEAKVNVSGGAI 172
P +MG GP A+ VL G +++D+FE+NEAFAAQ++ C+ +LG+D KVN GGAI
Sbjct: 288 PEIMGVGPAYAIPKVLEATGLQVQDIDIFEINEAFAAQALYCIHKLGIDLNKVNPRGGAI 347
Query: 173 ALGHPIGASGTRVLVTLLYALKR 195
ALGHP+G +G R + T+L LK+
Sbjct: 348 ALGHPLGCTGARQVATILRELKK 370
>2ib8_A Acetyl-COA acetyltransferase; thiolase fold, potassium ION,
chloride, beta-alpha-beta-ALPH alpha-beta-BETA topology;
HET: MES; 1.85A {Homo sapiens} PDB: 2ib7_A* 2ib9_A*
2ibu_A* 2ibw_A* 2iby_A* 2f2s_A*
Length = 395
Score = 168 bits (427), Expect = 8e-51
Identities = 37/93 (39%), Positives = 58/93 (62%), Gaps = 2/93 (2%)
Query: 111 HKPTLMGTGPIPAVNAVLAKAGWSKEEVDLFELNEAFAAQSIACLRELGLDEAKVNVSGG 170
+P P+ A + VL G KE++ ++E+NEAF+ +A ++ L +D KVN++GG
Sbjct: 288 VEPIDFPIAPVYAASMVLKDVGLKKEDIAMWEVNEAFSLVVLANIKMLEIDPQKVNINGG 347
Query: 171 AIALGHPIGASGTRVLVTLLYALKRLNKSKGCA 203
A++LGHPIG SG R++ L +ALK+ G A
Sbjct: 348 AVSLGHPIGMSGARIVGHLTHALKQ--GEYGLA 378
>1ulq_A Putative acetyl-COA acetyltransferase; structural genomics, riken
structural genomics/proteomics initiative, RSGI; 3.00A
{Thermus thermophilus} SCOP: c.95.1.1 c.95.1.1
Length = 401
Score = 166 bits (422), Expect = 4e-50
Identities = 47/93 (50%), Positives = 65/93 (69%), Gaps = 2/93 (2%)
Query: 113 PTLMGTGPIPAVNAVLAKAGWSKEEVDLFELNEAFAAQSIACLRELGL--DEAKVNVSGG 170
P +MG GP+PA L +AG S ++ L ELNEAFAAQ++A LRE L ++ ++N +GG
Sbjct: 291 PRIMGIGPVPATRKALERAGLSFSDLGLIELNEAFAAQALAVLREWSLSMEDQRLNPNGG 350
Query: 171 AIALGHPIGASGTRVLVTLLYALKRLNKSKGCA 203
AIALGHP+GASG R+L TL++ ++R G A
Sbjct: 351 AIALGHPLGASGARILTTLVHEMRRRKVQFGLA 383
>1wdk_C 3-ketoacyl-COA thiolase; alpha2BETA2 heterotetrameric complex,
lyase, oxidoreductase/transferase complex, lyase; HET:
ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: c.95.1.1
c.95.1.1 PDB: 1wdl_C* 1wdm_C* 2d3t_C*
Length = 390
Score = 164 bits (419), Expect = 8e-50
Identities = 43/94 (45%), Positives = 60/94 (63%), Gaps = 3/94 (3%)
Query: 113 PTLMGTGPIPAVNAVLAKAGWSKEEVDLFELNEAFAAQSIACLRELGL---DEAKVNVSG 169
P +MG GP+PA L +AG + ++D ELNEAFAAQ++ L++L + KVN+ G
Sbjct: 280 PAIMGYGPVPATQKALKRAGLNMADIDFIELNEAFAAQALPVLKDLKVLDKMNEKVNLHG 339
Query: 170 GAIALGHPIGASGTRVLVTLLYALKRLNKSKGCA 203
GAIALGHP G SG R+ TLL +K+ + G +
Sbjct: 340 GAIALGHPFGCSGARISGTLLNVMKQNGGTFGLS 373
>3goa_A 3-ketoacyl-COA thiolase; metabolism, fatty acid, phospholipid,
IDP01071, acyltransferase, cytoplasm, fatty acid
metabolism; 1.70A {Salmonella typhimurium}
Length = 387
Score = 162 bits (412), Expect = 9e-49
Identities = 47/94 (50%), Positives = 67/94 (71%), Gaps = 3/94 (3%)
Query: 113 PTLMGTGPIPAVNAVLAKAGWSKEEVDLFELNEAFAAQSIACLRELGLDEA---KVNVSG 169
P++MG GP+PA L KAG S ++D+FE+NEAFAAQ + C+++LGL E K+N++G
Sbjct: 277 PSIMGYGPVPASKLALKKAGLSASDIDVFEMNEAFAAQILPCIKDLGLMEQIDEKINLNG 336
Query: 170 GAIALGHPIGASGTRVLVTLLYALKRLNKSKGCA 203
GAIALGHP+G SG R+ TL+ ++R + G A
Sbjct: 337 GAIALGHPLGCSGARISTTLINLMERKDAQFGLA 370
>2iik_A 3-ketoacyl-COA thiolase, peroxisomal; fatty acid metabolism,
structural genomics, structural genom consortium, SGC,
transferase; 2.55A {Homo sapiens}
Length = 418
Score = 162 bits (413), Expect = 1e-48
Identities = 44/88 (50%), Positives = 59/88 (67%)
Query: 113 PTLMGTGPIPAVNAVLAKAGWSKEEVDLFELNEAFAAQSIACLRELGLDEAKVNVSGGAI 172
P +MG GP A+ L KAG + +VD+FE+NEAFA+Q+ C+ +L L KVN GGA+
Sbjct: 308 PDIMGIGPAYAIPVALQKAGLTVSDVDIFEINEAFASQAAYCVEKLRLPPEKVNPLGGAV 367
Query: 173 ALGHPIGASGTRVLVTLLYALKRLNKSK 200
ALGHP+G +G R ++TLL LKR K
Sbjct: 368 ALGHPLGCTGARQVITLLNELKRRGKRA 395
>2wu9_A 3-ketoacyl-COA thiolase 2, peroxisomal; cysteine oxidation, fatty
acid metabolism, oxylipin biosynthesis, plant lipid
metabolism; 1.50A {Arabidopsis thaliana} PDB: 2c7y_A
2c7z_A 2wua_A
Length = 442
Score = 161 bits (410), Expect = 5e-48
Identities = 44/86 (51%), Positives = 63/86 (73%)
Query: 113 PTLMGTGPIPAVNAVLAKAGWSKEEVDLFELNEAFAAQSIACLRELGLDEAKVNVSGGAI 172
P +MG GP A+ A + AG +++DLFE+NEAFA+Q + C +LGLD K+NV+GGA+
Sbjct: 310 PAIMGIGPAVAIPAAVKAAGLELDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGAM 369
Query: 173 ALGHPIGASGTRVLVTLLYALKRLNK 198
A+GHP+GA+G R + TLL+ +KR K
Sbjct: 370 AIGHPLGATGARCVATLLHEMKRRGK 395
>3svk_A Acetyl-COA acetyltransferase; ssgcid, NIH, niaid, SBRI, UW, emerald
biostructures, structu genomics; 2.20A {Mycobacterium
avium}
Length = 407
Score = 154 bits (392), Expect = 1e-45
Identities = 40/89 (44%), Positives = 62/89 (69%)
Query: 113 PTLMGTGPIPAVNAVLAKAGWSKEEVDLFELNEAFAAQSIACLRELGLDEAKVNVSGGAI 172
P +M TGP PA VL +AG + +++DLFELNEAFA+ + ++L + + K+NV+GGAI
Sbjct: 300 PVIMLTGPTPATRKVLDRAGLTIDDIDLFELNEAFASVVLKFQKDLNIPDEKLNVNGGAI 359
Query: 173 ALGHPIGASGTRVLVTLLYALKRLNKSKG 201
A+GHP+GA+G + T++ L+R N +
Sbjct: 360 AMGHPLGATGAMITGTMVDELERRNARRA 388
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 49.3 bits (117), Expect = 3e-07
Identities = 36/210 (17%), Positives = 64/210 (30%), Gaps = 75/210 (35%)
Query: 16 GPQEEGI------RHQVFRARVNFNTANDFIFVERFRVSRDVVEQILTTVSPFLEHPTNR 69
G QE+G+ + + V +N A D F + + S IL V + +P N
Sbjct: 1625 GSQEQGMGMDLYKTSKAAQD-V-WNRA-DNHFKDTYGFS------ILDIV---INNPVN- 1671
Query: 70 RHALTSRQQVLLTLHWLGNGAQ----------YHITADAHGVSKSTVQRTVHKPTLMGTG 119
LT+H+ G + + D ++
Sbjct: 1672 -----------LTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEK--------------- 1705
Query: 120 PIPAVNAVLAKAGWSKEEVDLFELNE----AFAAQSIACLRELGLDEAKVNVSGGAIALG 175
+N + E+ L + A A +L ++K + A G
Sbjct: 1706 IFKEINEHSTSYTFRSEKGLLS-ATQFTQPALTLMEKAAFEDL---KSKGLIPADATFAG 1761
Query: 176 HPIG-----ASGTRVL-----VTLLYALKR 195
H +G AS V+ V +++ R
Sbjct: 1762 HSLGEYAALASLADVMSIESLVEVVF--YR 1789
Score = 43.1 bits (101), Expect = 3e-05
Identities = 31/187 (16%), Positives = 52/187 (27%), Gaps = 57/187 (30%)
Query: 17 PQEEGIRHQVFRARVNFNTANDF-IF-------------VERFRVSRDVVEQILTTVSPF 62
P ++ +FRA V A IF + ++ +V ++ +
Sbjct: 136 PFDKKSNSALFRA-VGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAET 194
Query: 63 LEHPTNRRHALTS-RQQVLLTLHWLGN--------------------G----AQYHITAD 97
L Q L L WL N G A Y +TA
Sbjct: 195 LSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAK 254
Query: 98 AHGVSKSTVQRTVHKPTLMGTGPIPAVNAVLAKAG-WSKEEVDLFELNEAFAAQSIACLR 156
G + ++ + T G + A +A+ W E+F +
Sbjct: 255 LLGFTPGELRSYLKGATGHSQGLVTA--VAIAETDSW-----------ESFFVSVRKAIT 301
Query: 157 EL---GL 160
L G+
Sbjct: 302 VLFFIGV 308
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 42.9 bits (101), Expect = 4e-05
Identities = 21/113 (18%), Positives = 39/113 (34%), Gaps = 14/113 (12%)
Query: 93 HITADAHGVSKSTVQRTVHKPTLMGTGPIPAVNAVLAKAGWSKEEVDLF----------E 142
I +A ++ Q+ I + LA G + +++ + +
Sbjct: 1293 EIHNEAESQLRAA-QQQWGNDFYKRDPRIAPLRGALATYGLTIDDLGVASFHGTSTKAND 1351
Query: 143 LNEAFAAQSIACLRELGLDEA-KVNVSGGAIALGHPIGASGTRVLVTLLYALK 194
NE+ + ++ LG E V GHP GA+G ++ L L
Sbjct: 1352 KNESATINEM--MKHLGRSEGNPVIGVFQKFLTGHPKGAAGAWMMNGALQILN 1402
>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl
reductase, ketoacyl synthase, ketoacyl reductase; 3.1A
{Thermomyces lanuginosus} PDB: 2uvb_A*
Length = 1878
Score = 33.8 bits (77), Expect = 0.039
Identities = 22/113 (19%), Positives = 36/113 (31%), Gaps = 14/113 (12%)
Query: 93 HITADAHGVSKSTVQRTVHKPTLMGTGPIPAVNAVLAKAGWSKEEVD----------LFE 142
HI +A ++ I + LA G + +++ +
Sbjct: 1473 HIEREARRQEAEAQTSFGNEFWRRD-SRIAPLRGALATWGLTIDDLGVASFHGTSTVAND 1531
Query: 143 LNEAFAAQSIACLRELGLDEA-KVNVSGGAIALGHPIGASGTRVLVTLLYALK 194
NE+ L+ LG + V GHP GA+G +L L L
Sbjct: 1532 KNESDVICQQ--LKHLGRTKGNAVLGIFQKYLTGHPKGAAGAWMLNGCLQVLN 1582
>3s3l_A CERJ; acyltransferase, FABH homologue, KS III homologue, dimethyl
transfer, transferase; 2.00A {Streptomyces tendae} PDB:
3t5y_A* 3t6s_A* 3t8e_A 3t5y_B*
Length = 357
Score = 33.0 bits (76), Expect = 0.047
Identities = 8/47 (17%), Positives = 17/47 (36%), Gaps = 4/47 (8%)
Query: 123 AVNAVLAKAGWSKEEVDLFELNEAFAAQSI--ACLRELGLDEAKVNV 167
A L AG + E++ + + + LGL + + +
Sbjct: 243 AKTQALEDAGTAIEDIAHAVIP--VSRRGTGHELHDLLGLPDERTSW 287
>3ho9_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; FABF, platensimycin,
platencin A1, KAS2, acyltransferase, fatty acid
biosynthesis; HET: N3A; 1.90A {Escherichia coli} PDB:
3hnz_A* 3ho2_A* 3i8p_A* 3g11_A* 2gfx_A* 3g0y_A* 2gfv_A*
2gfw_A 2gfy_A* 1kas_A 1b3n_A
Length = 427
Score = 32.9 bits (76), Expect = 0.060
Identities = 23/101 (22%), Positives = 35/101 (34%), Gaps = 31/101 (30%)
Query: 92 YHITADAHGVSKSTVQRTVHKPTLMGTGPIPAVNAVLAKAGWSKEEVD----------LF 141
YH+T+ P G G A+ L AG ++
Sbjct: 282 YHMTS----------------PPENGAGAALAMANALRDAGIEASQIGYVNAHGTSTPAG 325
Query: 142 ELNEAFAAQSIACLRELGLDEAKVNVSGGAIALGHPIGASG 182
+ EA A ++I G ++V VS GH +GA+G
Sbjct: 326 DKAEAQAVKTI-----FGEAASRVLVSSTKSMTGHLLGAAG 361
>3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI
biosynthesis, schiff base, cytoplasm, diaminopimelate
biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae}
Length = 311
Score = 32.1 bits (74), Expect = 0.085
Identities = 12/54 (22%), Positives = 19/54 (35%), Gaps = 3/54 (5%)
Query: 118 TGPIPAVNAVLAKAGWSKEEVDL--FELNEAFAAQSIACLRELGLDEAKVNVSG 169
P P V A+L G+ L E + I + + + K V+G
Sbjct: 253 PSPAP-VKAILNYMGFEAGPTRLPLVPAPEEDVKRIIKVVVDGDYEATKATVTG 305
>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis,
malonyl/palmitoyl transferase, phosphopantetheine,
transferase; HET: GVL FMN; 3.10A {Saccharomyces
cerevisiae} PDB: 2vkz_A* 3hmj_A*
Length = 1887
Score = 32.6 bits (74), Expect = 0.098
Identities = 21/113 (18%), Positives = 39/113 (34%), Gaps = 14/113 (12%)
Query: 93 HITADAHGVSKSTVQRTVHKPTLMGTGPIPAVNAVLAKAGWSKEEVDLF----------E 142
I +A ++ Q+ I + LA G + +++ + +
Sbjct: 1492 EIHNEAESQLRAA-QQQWGNDFYKRDPRIAPLRGALATYGLTIDDLGVASFHGTSTKAND 1550
Query: 143 LNEAFAAQSIACLRELGLDEA-KVNVSGGAIALGHPIGASGTRVLVTLLYALK 194
NE+ + ++ LG E V GHP GA+G ++ L L
Sbjct: 1551 KNESATINEM--MKHLGRSEGNPVIGVFQKFLTGHPKGAAGAWMMNGALQILN 1601
>1e5m_A KAS II, beta ketoacyl acyl carrier protein synthase II; condensing
enzyme, biosynthetic role, carbon-carbon bond formation;
1.54A {Synechocystis SP} SCOP: c.95.1.1 c.95.1.1
Length = 416
Score = 32.1 bits (74), Expect = 0.11
Identities = 24/101 (23%), Positives = 31/101 (30%), Gaps = 31/101 (30%)
Query: 92 YHITADAHGVSKSTVQRTVHKPTLMGTGPIPAVNAVLAKAGWSKEEVD----------LF 141
YHITA P G G A+ L +G E V
Sbjct: 271 YHITA----------------PVPDGRGATRAIAWALKDSGLKPEMVSYINAHGTSTPAN 314
Query: 142 ELNEAFAAQSIACLRELGLDEAKVNVSGGAIALGHPIGASG 182
++ E A + LG + VS GH +G SG
Sbjct: 315 DVTETRAIKQA-----LGNHAYNIAVSSTKSMTGHLLGGSG 350
>1j3n_A 3-oxoacyl-(acyl-carrier protein) synthase II; condensing enzymes,
fatty acid elongation, acyl-carrier protein (ACP); HET:
CIT; 2.00A {Thermus thermophilus} SCOP: c.95.1.1
c.95.1.1
Length = 408
Score = 31.7 bits (73), Expect = 0.13
Identities = 22/101 (21%), Positives = 35/101 (34%), Gaps = 31/101 (30%)
Query: 92 YHITADAHGVSKSTVQRTVHKPTLMGTGPIPAVNAVLAKAGWSKEEVD----------LF 141
+HIT P G G A+ L AG + E+V +
Sbjct: 265 HHITE----------------PHPEGKGAALAMARALKDAGIAPEQVGYINAHGTSTPVG 308
Query: 142 ELNEAFAAQSIACLRELGLDEAKVNVSGGAIALGHPIGASG 182
+ E A + + G ++ VS +GH +GA+G
Sbjct: 309 DRAEVLAIKRV-----FGDHAKRLMVSSTKSMIGHLLGAAG 344
>3o04_A LMO2201 protein, beta-keto-acyl carrier protein synthase II; csgid,
structural genomics; 1.85A {Listeria monocytogenes}
Length = 413
Score = 31.7 bits (73), Expect = 0.14
Identities = 24/101 (23%), Positives = 36/101 (35%), Gaps = 31/101 (30%)
Query: 92 YHITADAHGVSKSTVQRTVHKPTLMGTGPIPAVNAVLAKAGWSKEEVD----------LF 141
YHITA P G G A+ + AG + ++VD
Sbjct: 267 YHITA----------------PAPNGEGAARAMKMAIDDAGLTPDKVDYINAHGTSTPYN 310
Query: 142 ELNEAFAAQSIACLRELGLDEAKVNVSGGAIALGHPIGASG 182
+ E A +++ G K+ +S GH +GASG
Sbjct: 311 DEYETQAIKTV-----FGEHAKKLAISSTKSMTGHTLGASG 346
>3kzu_A 3-oxoacyl-(acyl-carrier-protein) synthase II; seattle structural
genomics center for infectious disease, ssgcid,
acyltransferase; 1.75A {Brucella melitensis} PDB: 3e60_A
Length = 428
Score = 31.3 bits (72), Expect = 0.18
Identities = 25/100 (25%), Positives = 42/100 (42%), Gaps = 30/100 (30%)
Query: 92 YHITADAHGVSKSTVQRTVHKPTLMGTGPIPAVNAVLAKAGWSKEEVD---------LFE 142
+HITA PT G G + A L +AG +E+D + +
Sbjct: 283 FHITA----------------PTESGEGAQRCMVAALKRAGIVPDEIDYINAHGTSTMAD 326
Query: 143 LNEAFAAQSIACLRELGLDEAKVNVSGGAIALGHPIGASG 182
E A + + +G AK+++S ++GH +GA+G
Sbjct: 327 TIELGAVERV-----VGEAAAKISMSSTKSSIGHLLGAAG 361
>2gqd_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; duplicated babababb
fold, transferase; 2.30A {Staphylococcus aureus}
Length = 437
Score = 31.4 bits (72), Expect = 0.19
Identities = 25/101 (24%), Positives = 36/101 (35%), Gaps = 31/101 (30%)
Query: 92 YHITADAHGVSKSTVQRTVHKPTLMGTGPIPAVNAVLAKAGWSKEEVD----------LF 141
YHITA P G G A+ A + AG ++V +
Sbjct: 291 YHITA----------------PAPEGEGGSRAMQAAMDDAGIEPKDVQYLNAHGTSTPVG 334
Query: 142 ELNEAFAAQSIACLRELGLDEAKVNVSGGAIALGHPIGASG 182
+LNE A ++ G + VS GH +GA+G
Sbjct: 335 DLNEVKAIKNT-----FGEAAKHLKVSSTKSMTGHLLGATG 370
>3s21_A 3-oxoacyl-[ACP] synthase III; non-decarboxylative claisen
condensation reaction, transfera; HET: CER; 1.70A
{Xanthomonas campestris PV} PDB: 3s23_A* 3row_A 3s1z_A
3s20_A* 3fk5_A
Length = 345
Score = 31.1 bits (71), Expect = 0.21
Identities = 15/67 (22%), Positives = 25/67 (37%), Gaps = 22/67 (32%)
Query: 123 AVNAVLAKAGWSKEEVDLFEL---N----EAFAAQSIACLRELGLDEAKV--------NV 167
A GW+ EE+D F + + AF + G+D AKV N+
Sbjct: 251 TFVAAKQVLGWAVEELDQFVIHQVSRPHTAAFV-------KSFGIDPAKVMTIFGEHGNI 303
Query: 168 SGGAIAL 174
++ +
Sbjct: 304 GPASVPI 310
>4ddo_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; ssgcid, struct
genomics, seattle structural genomics center for
infectious transferase; 1.90A {Burkholderia
vietnamiensis} PDB: 4f32_A*
Length = 451
Score = 31.0 bits (71), Expect = 0.23
Identities = 22/101 (21%), Positives = 36/101 (35%), Gaps = 32/101 (31%)
Query: 92 YHITADAHGVSKSTVQRTVHKPTLMGTGPIPAVNAVLAKAGWSKEEVD----------LF 141
YH+TA G+G + A+ L + E+VD +
Sbjct: 298 YHMTA----------------GPDDGSGAMRAMKLALRMGDVAPEQVDYVNAHATSTPVG 341
Query: 142 ELNEAFAAQSIACLRELGLDEAKVNVSGGAIALGHPIGASG 182
+ E A +++ G A +S A GH +GA+G
Sbjct: 342 DAGEIEALKTV-----FG-VGAGPAISSTKSATGHLLGAAG 376
>2iwz_A 3-oxoacyl-[acyl-carrier-protein] synthase; mitochondria,
mitochondrion, lipid synthesis, fatty acid SYN fatty
acid biosynthesis; 1.65A {Homo sapiens} PDB: 2iwy_A
2c9h_A
Length = 438
Score = 30.6 bits (70), Expect = 0.35
Identities = 24/101 (23%), Positives = 33/101 (32%), Gaps = 31/101 (30%)
Query: 92 YHITADAHGVSKSTVQRTVHKPTLMGTGPIPAVNAVLAKAGWSKEEVD----------LF 141
HITA P G G + + A L AG EE+ L
Sbjct: 291 GHITA----------------PDPEGEGALRCMAAALKDAGVQPEEISYINAHATSTPLG 334
Query: 142 ELNEAFAAQSIACLRELGLDEAKVNVSGGAIALGHPIGASG 182
+ E A + + + VS A GH +GA+G
Sbjct: 335 DAAENKAIKHL-----FKDHAYALAVSSTKGATGHLLGAAG 370
>4dpp_A DHDPS 2, dihydrodipicolinate synthase 2, chloroplastic; amino-acid
biosynthesis, (S)-lysine biosynthesis VIA DAP PAT
(beta/alpha)8-barrel; 2.00A {Arabidopsis thaliana} PDB:
4dpq_A*
Length = 360
Score = 30.3 bits (69), Expect = 0.40
Identities = 11/46 (23%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Query: 118 TGPIPAVNAVLAKAGWSKEEVDL--FELNEAFAAQSIACLRELGLD 161
PI +N LA+ G S+ L L + + + ++E+G +
Sbjct: 294 PNPIG-INTALAQLGVSRPVFRLPYVPLPLSKRLEFVKLVKEIGRE 338
>2d0o_A DIOL dehydratase-reactivating factor large subunit; chaperone; HET:
ADP; 2.00A {Klebsiella oxytoca} SCOP: c.8.6.1 c.55.1.6
c.55.1.6 PDB: 2d0p_A
Length = 610
Score = 30.3 bits (68), Expect = 0.41
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 119 GPIPAVNAVLAKAGWSKEEVDLFELNEA 146
G A+ V AG + ++ L +NEA
Sbjct: 49 GIQEALALVARGAGIAVSDISLIRINEA 76
>2gp6_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; thiolase fold,
structural genomics, PSI, protein structure initiative;
2.40A {Mycobacterium tuberculosis}
Length = 434
Score = 29.4 bits (67), Expect = 0.93
Identities = 20/101 (19%), Positives = 32/101 (31%), Gaps = 33/101 (32%)
Query: 92 YHITADAHGVSKSTVQRTVHKPTLMGTGPIPAVNAVLAKAGWSKEEVD----------LF 141
+H+ A P G A+ + AG + ++D +
Sbjct: 292 FHMVA----------------PDPNGERAGHAITRAIQLAGLAPGDIDHVNAHATGTQVG 335
Query: 142 ELNEAFAAQSIACLRELGLDEAKVNVSGGAIALGHPIGASG 182
+L E A + L + V ALGH +GA G
Sbjct: 336 DLAEGRAINNA-------LGGNRPAVYAPKSALGHSVGAVG 369
>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium
tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A
{Agrobacterium tumefaciens str}
Length = 332
Score = 29.1 bits (66), Expect = 0.95
Identities = 8/45 (17%), Positives = 12/45 (26%), Gaps = 2/45 (4%)
Query: 118 TGPIPAVNAVLAKAGWSKEEVD--LFELNEAFAAQSIACLRELGL 160
G I + A + E + L A + L L
Sbjct: 283 FGSIRVIYAAANILSLTVSEPPRPILPLTSAERQRVEEALEALSA 327
>3gwa_A 3-oxoacyl-(acyl-carrier-protein) synthase III; structural genomics,
synthetase; 1.60A {Burkholderia pseudomallei} PDB:
3gwe_A
Length = 365
Score = 28.7 bits (65), Expect = 1.3
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 123 AVNAVLAKAGWSKEEVDLF 141
A + +LA AG +E +D F
Sbjct: 271 AADRLLALAGEPRENIDCF 289
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 28.7 bits (63), Expect = 1.5
Identities = 20/173 (11%), Positives = 43/173 (24%), Gaps = 55/173 (31%)
Query: 3 NLLNPLWSDSEED-----GPQEEGIR----------HQVFRARVNFNTANDFIFV-ERFR 46
++ + S E D G ++ + V ++ F+ +
Sbjct: 40 DMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIK 99
Query: 47 V-SRD----------VVEQILTTVSPFLEHPTNRRHALTSRQQVLLTLHWLGNGAQYHIT 95
R +++ F ++ +R +Q LL L
Sbjct: 100 TEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELR----------- 148
Query: 96 ADAHGVSKSTVQRTVHKPTLM-GTGPIPAVNAVLAKAGWSKEEVDLFELNEAF 147
A V + + G+G +A +V + F
Sbjct: 149 -PAKNV-------LIDG---VLGSG-----KTWVALDVCLSYKVQCKMDFKIF 185
>1nbw_A Glycerol dehydratase reactivase alpha subunit; molecular chaperone,
actin-like ATPase domain, beta/BETA/alpha swiveling
domain, hydrolase; 2.40A {Klebsiella pneumoniae} SCOP:
c.8.6.1 c.55.1.6 c.55.1.6
Length = 607
Score = 28.7 bits (64), Expect = 1.6
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 119 GPIPAVNAVLAKAGWSKEEVDLFELNEA 146
G + A+ LAK WS +V LNEA
Sbjct: 48 GTLAALEQALAKTPWSMSDVSRIYLNEA 75
>1u6e_A 3-oxoacyl-[acyl-carrier-protein] synthase III; transferase; 1.85A
{Mycobacterium tuberculosis} SCOP: c.95.1.2 c.95.1.2
PDB: 1u6s_A* 1m1m_A 1hzp_A* 2qnx_A* 2qnz_A* 2qo1_A*
2qx1_A* 2qo0_A* 2qny_A* 2ahb_A 2aj9_A
Length = 335
Score = 28.6 bits (65), Expect = 1.6
Identities = 4/20 (20%), Positives = 9/20 (45%)
Query: 122 PAVNAVLAKAGWSKEEVDLF 141
+ AG +++D+F
Sbjct: 236 DVGRRAMDAAGVRPDQIDVF 255
>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues,
protein repair, deamidation, post-translational
modification; HET: SAH; 1.80A {Thermotoga maritima}
SCOP: c.66.1.7 d.197.1.1
Length = 317
Score = 28.5 bits (64), Expect = 1.6
Identities = 12/63 (19%), Positives = 22/63 (34%), Gaps = 2/63 (3%)
Query: 126 AVLAKAGWSKEEVDLFELNEAFAAQSIACLRELGLDEAKVNVSGGAIALGHPIGASGTRV 185
AV+++ K V E + + + LG++ G G P + +
Sbjct: 91 AVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDG--YYGVPEFSPYDVI 148
Query: 186 LVT 188
VT
Sbjct: 149 FVT 151
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation,
chromatin, structural genomics consortium, SGC,
activator, chromatin regulator; HET: DNA; 1.80A {Homo
sapiens}
Length = 93
Score = 27.1 bits (60), Expect = 1.6
Identities = 9/24 (37%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
Query: 125 NAVLAKAGWSKEEVD-LFELNEAF 147
L W+K E D LF+L+ F
Sbjct: 25 QLYLHDDAWTKAETDHLFDLSRRF 48
>4efi_A 3-oxoacyl-(acyl-carrier protein) synthase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 1.35A {Burkholderia xenovorans}
Length = 354
Score = 28.3 bits (64), Expect = 1.7
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 123 AVNAVLAKAGWSKEEVDLF 141
V+ L AG K+ D F
Sbjct: 249 LVSRTLDIAGRDKDSYDAF 267
>2x3e_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; HED, transferase,
acyltransferase, lipid synthesis, multifun enzyme; 1.81A
{Pseudomonas aeruginosa}
Length = 331
Score = 28.2 bits (64), Expect = 1.7
Identities = 5/19 (26%), Positives = 9/19 (47%)
Query: 123 AVNAVLAKAGWSKEEVDLF 141
+V VL + GW ++
Sbjct: 229 SVRRVLDRVGWQASDLHHL 247
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.0 bits (61), Expect = 1.7
Identities = 4/31 (12%), Positives = 12/31 (38%), Gaps = 8/31 (25%)
Query: 103 KSTVQR-----TVHKPTLMGTGPIPAVNAVL 128
K +++ ++ + P A+ A +
Sbjct: 19 KQALKKLQASLKLYAD---DSAPALAIKATM 46
>1mzj_A Beta-ketoacylsynthase III; beta-ketosynthase, aromatic polyketide,
biosynthetic engineering, catalytic triad, transferase;
HET: COA; 2.10A {Streptomyces SP} SCOP: c.95.1.2
c.95.1.2
Length = 339
Score = 27.9 bits (63), Expect = 2.2
Identities = 6/20 (30%), Positives = 9/20 (45%)
Query: 122 PAVNAVLAKAGWSKEEVDLF 141
PA L AG + ++ F
Sbjct: 235 PAAREALEVAGLTVGDLVAF 254
>3h78_A PQS biosynthetic enzyme; PQSD, anthranilic acid, anthraniloyl-COA,
transferase; HET: BE2; 1.70A {Pseudomonas aeruginosa
PAO1} PDB: 3h76_A 3h77_A*
Length = 359
Score = 27.9 bits (63), Expect = 2.6
Identities = 3/19 (15%), Positives = 8/19 (42%)
Query: 123 AVNAVLAKAGWSKEEVDLF 141
+LA + +++D
Sbjct: 259 IAGEMLAAHELTLDDIDHV 277
>3n05_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics,
protein structure initiative, P nysgrc; 2.35A
{Streptomyces avermitilis}
Length = 590
Score = 27.7 bits (62), Expect = 2.7
Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
Query: 139 DLFELNEAFAAQSIACLRELGLDEAKVNVSGGAIALGHPI 178
DL L +F S LREL A+ + +G+
Sbjct: 55 DLA-LRSSFVEASRTALRELAARLAEEGFGELPVLVGYLD 93
>1ox0_A Beta ketoacyl-acyl carrier protein synthase; transferase; 1.30A
{Streptococcus pneumoniae} SCOP: c.95.1.1 c.95.1.1 PDB:
1oxh_A 2alm_A 2rjt_A
Length = 430
Score = 27.9 bits (63), Expect = 2.9
Identities = 26/101 (25%), Positives = 37/101 (36%), Gaps = 34/101 (33%)
Query: 92 YHITADAHGVSKSTVQRTVHKPTLMGTGPIPAVNAVLAKAGWSKEEVD----------LF 141
YH+T+ P G G I A+ L +A S E+V
Sbjct: 286 YHMTS----------------PHPEGQGAIKAIKLALEEAEISPEQVAYVNAHGTSTPAN 329
Query: 142 ELNEAFAAQSIACLRELGLDEAKVNVSGGAIALGHPIGASG 182
E E+ A ++ LG +V VS GH +GA+G
Sbjct: 330 EKGESGAIVAV-----LG---KEVPVSSTKSFTGHLLGAAG 362
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon
DNA, bipartite DNA-binding, HTH- motif, DNA binding
protein/DNA complex; 2.69A {Caenorhabditis elegans}
SCOP: a.4.1.2 a.4.1.2
Length = 141
Score = 26.9 bits (59), Expect = 2.9
Identities = 10/54 (18%), Positives = 19/54 (35%), Gaps = 1/54 (1%)
Query: 69 RRHALTSRQQVLLTLHWLGNGAQYHITADAHGVSKSTVQRTVHKPTLMGTGPIP 122
R AL+ ++ L + L H + S+ ++ + P GT
Sbjct: 3 RGSALSDTERAQLDVMKL-LNVSLHEMSRKISRSRHCIRVYLKDPVSYGTSKRA 55
>2jvm_A Uncharacterized protein; alpha+beta, structural genomics, unknown
function, PSI-2, protein structure initiative; NMR
{Rhodobacter sphaeroides 2}
Length = 80
Score = 26.2 bits (57), Expect = 3.0
Identities = 12/36 (33%), Positives = 16/36 (44%)
Query: 142 ELNEAFAAQSIACLRELGLDEAKVNVSGGAIALGHP 177
+ + A SI + + KV GG ALGHP
Sbjct: 6 KTRQESARMSIEAPETVVVSTWKVACDGGEGALGHP 41
>1tqy_A Beta-ketoacyl synthase/acyl transferase;
alpha-beta-alpha-beta-alpha, heterodimer, transferase;
2.00A {Streptomyces coelicolor} SCOP: c.95.1.1 c.95.1.1
Length = 424
Score = 27.8 bits (63), Expect = 3.0
Identities = 17/101 (16%), Positives = 29/101 (28%), Gaps = 31/101 (30%)
Query: 92 YHITADAHGVSKSTVQRTVHKPTLMGTGPIPAVNAVLAKAGWSKEEVD----------LF 141
YH+T G + L ++ ++D
Sbjct: 273 YHMTG----------------LKADGREMAETIRVALDESRTDATDIDYINAHGSGTRQN 316
Query: 142 ELNEAFAAQSIACLRELGLDEAKVNVSGGAIALGHPIGASG 182
+ +E A + LG + VS +GH +GA G
Sbjct: 317 DRHETAAYKRA-----LGEHARRTPVSSIKSMVGHSLGAIG 352
>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM
barrel, NYSGXRC, PSI-2, structural genomics; 1.90A
{Oceanobacillus iheyensis HTE831}
Length = 314
Score = 27.5 bits (62), Expect = 3.3
Identities = 5/57 (8%), Positives = 15/57 (26%), Gaps = 3/57 (5%)
Query: 110 VHKPTLMGTGPIPAVNAVLAKAGWSKEEVD--LFELNEAFAAQSIACLRELGLDEAK 164
+ G + + + + G + L+ + L+ E +
Sbjct: 251 LRAKHNNGNNVVI-IKEAMEQLGLRAGVTREPVNPLSPNDRLELEELLKSWNTQEVR 306
>2wge_A 3-oxoacyl-[acyl-carrier-protein] synthase 1; beta ketoacyl synthase
I thiolactomycin, cytoplasm, transferase,
acyltransferase; HET: TLM; 1.80A {Mycobacterium
tuberculosis} PDB: 2wgd_A* 2wgg_A* 2wgf_A*
Length = 416
Score = 27.4 bits (62), Expect = 3.9
Identities = 23/101 (22%), Positives = 33/101 (32%), Gaps = 34/101 (33%)
Query: 92 YHITADAHGVSKSTVQRTVHKPTLMGTGPIPAVNAVLAKAGWSKEEVD----------LF 141
+H+ A P G A+ L AG S ++D +
Sbjct: 275 FHMVA----------------PAADGVRAGRAMTRSLELAGLSPADIDHVNAHGTATPIG 318
Query: 142 ELNEAFAAQSIACLRELGLDEAKVNVSGGAIALGHPIGASG 182
+ EA A + D+A V A+ GH IGA G
Sbjct: 319 DAAEANAIRVA-----GC-DQAAVYAPKSAL--GHSIGAVG 351
>3ov2_A Curcumin synthase; type III polyketide synthase, transferase; 2.32A
{Curcuma longa} PDB: 3ov3_A
Length = 393
Score = 27.1 bits (60), Expect = 4.6
Identities = 8/47 (17%), Positives = 17/47 (36%)
Query: 122 PAVNAVLAKAGWSKEEVDLFELNEAFAAQSIACLRELGLDEAKVNVS 168
++ LA G + + + A A +L L K++ +
Sbjct: 281 RSLERALAPLGVREWNDVFWVAHPGNWAIIDAIEAKLQLSPDKLSTA 327
>4dfe_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; ssgcid, seattle
structural genomics center for infectious DI
transferase; 2.35A {Burkholderia xenovorans}
Length = 333
Score = 27.1 bits (61), Expect = 4.8
Identities = 6/19 (31%), Positives = 8/19 (42%)
Query: 123 AVNAVLAKAGWSKEEVDLF 141
L KA S E++D
Sbjct: 239 VAVEALEKANLSAEQIDWL 257
>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin,
bacteroides F oxidoreductase; HET: FAD; 2.09A
{Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A*
2y6r_A* 3p9u_A*
Length = 398
Score = 27.0 bits (60), Expect = 5.5
Identities = 7/50 (14%), Positives = 18/50 (36%), Gaps = 15/50 (30%)
Query: 126 AVLAKAGWSKEEVDLFELNEAFAAQS------------IACLRELGLDEA 163
+L + G +V ++E + A+ +++ GL +
Sbjct: 43 KLLQQNGI---DVSVYERDNDREARIFGGTLDLHKGSGQEAMKKAGLLQT 89
>2ccv_A Helix pomatia agglutinin; lectin, snail; HET: A2G NAG; 1.30A
{Helix pomatia} SCOP: b.154.1.1 PDB: 2cgy_A* 2cgz_A*
2ce6_A
Length = 101
Score = 25.7 bits (56), Expect = 5.7
Identities = 5/31 (16%), Positives = 10/31 (32%), Gaps = 2/31 (6%)
Query: 6 NPLWSDSEEDGPQEEGIRHQVFRARVNFNTA 36
+ W+ D P + R + F +
Sbjct: 12 DAGWAKVPSDDPGRDNTRE--LAKNITFASP 40
>1hnj_A Beta-ketoacyl-acyl carrier protein synthase III; FABH, transferase;
HET: MLC; 1.46A {Escherichia coli} SCOP: c.95.1.2
c.95.1.2 PDB: 1hn9_A* 1hnh_A* 1hnd_A* 1hnk_A 1mzs_A*
2eft_A* 2gyo_A* 3il9_A 1ebl_A*
Length = 317
Score = 26.7 bits (60), Expect = 6.1
Identities = 4/19 (21%), Positives = 8/19 (42%)
Query: 123 AVNAVLAKAGWSKEEVDLF 141
V+ LA + ++D
Sbjct: 223 IVDETLAANNLDRSQLDWL 241
>2dqb_A Deoxyguanosinetriphosphate triphosphohydrolase, P; dntpase, DNTP,
single-stranded DNA, DNA dGTPase, HD superfamily,
structural genomics; 2.20A {Thermus thermophilus}
Length = 376
Score = 26.5 bits (59), Expect = 6.3
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 6/31 (19%)
Query: 149 AQSIACLRELGLDEAKVNVSGGAIALGHPIG 179
++SIA R LGL+E AIAL H +G
Sbjct: 87 SRSIA--RALGLNEDLTE----AIALSHDLG 111
>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM
barrel, NYSGXRC, PSI2, structural genomics; 1.87A
{Rhodopseudomonas palustris}
Length = 313
Score = 26.4 bits (59), Expect = 6.5
Identities = 8/50 (16%), Positives = 12/50 (24%), Gaps = 3/50 (6%)
Query: 120 PIPAVNAVLAKAGWSKEEVD---LFELNEAFAAQSIACLRELGLDEAKVN 166
+ VL K G L + + L L E +
Sbjct: 261 GLSVRKYVLKKRGLLSSSAQRKPGASLTDTAREEVDYLLSRLARVEGHHH 310
>1tqy_B Actinorhodin polyketide putative beta-ketoacyl SY;
alpha-beta-alpha-beta-alpha, heterodimer, transferase;
2.00A {Streptomyces coelicolor} SCOP: c.95.1.1 c.95.1.1
Length = 415
Score = 26.7 bits (60), Expect = 6.7
Identities = 18/101 (17%), Positives = 24/101 (23%), Gaps = 29/101 (28%)
Query: 92 YHITADAHGVSKSTVQRTVHKPTLMGTGPIPAVNAVLAKAGWSKEEVD----------LF 141
T D + G A+ L AG E+VD
Sbjct: 265 CASTFDPA-----------P-GSGRPAGLERAIRLALNDAGTGPEDVDVVFADGAGVPEL 312
Query: 142 ELNEAFAAQSIACLRELGLDEAKVNVSGGAIALGHPIGASG 182
+ EA A + G V V+ G G
Sbjct: 313 DAAEARAIGRV-----FG--REGVPVTVPKTTTGRLYSGGG 346
>3pys_P 30S ribosomal protein S16; ribosome, IGR, IRES, PSIV, CRPV; 3.40A
{Thermus thermophilus} PDB: 1pnx_P 1voq_P 1vos_P 1vov_P
1vox_P 1voz_P 1pns_P 3ms0_P 3mr8_P 3pyq_P 3pyn_P 3pyu_P
3fic_P* 1emw_A 1fjg_P* 1hnw_P* 1hnx_P* 1hnz_P* 1hr0_P
1i94_P* ...
Length = 83
Score = 25.2 bits (56), Expect = 6.7
Identities = 5/9 (55%), Positives = 6/9 (66%)
Query: 83 LHWLGNGAQ 91
+WL GAQ
Sbjct: 57 RYWLSVGAQ 65
>1zow_A 3-oxoacyl-[acyl-carrier-protein] synthase III; FABH, fatty acid
biosynthesis, transferase; 2.00A {Staphylococcus aureus
subsp} PDB: 3il7_A
Length = 313
Score = 26.3 bits (59), Expect = 7.6
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 123 AVNAVLAKAGWSKEEVDLF 141
A V+ KA + +++DLF
Sbjct: 217 ASTRVVEKANLTSDDIDLF 235
>2ebd_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, aquifex VF5,
lipid metabolism, structural genomics; 2.10A {Aquifex
aeolicus}
Length = 309
Score = 26.3 bits (59), Expect = 7.9
Identities = 9/19 (47%), Positives = 9/19 (47%)
Query: 123 AVNAVLAKAGWSKEEVDLF 141
VL KAG EEV L
Sbjct: 215 VCREVLEKAGVKPEEVSLV 233
>3il3_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, fatty acid
biosynthesis, antibiotic, acyltransferase, cytoplasm,
lipid synthesis; 2.70A {Haemophilus influenzae}
Length = 323
Score = 26.3 bits (59), Expect = 8.1
Identities = 4/19 (21%), Positives = 7/19 (36%)
Query: 123 AVNAVLAKAGWSKEEVDLF 141
V L K+++D
Sbjct: 229 VVEETLLANNLDKKDLDWL 247
>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold,
alpha/beta/alpha sandwich structure, STRU genomics,
NPPSFA; 2.00A {Methanocaldococcus jannaschii}
Length = 215
Score = 26.0 bits (58), Expect = 8.4
Identities = 19/63 (30%), Positives = 25/63 (39%), Gaps = 2/63 (3%)
Query: 126 AVLAKAGWSKEEVDLFELNEAFAAQSIACLRELGLDEAKVNVSGGAIALGHPIGASGTRV 185
AV A+ V E A ++ LR+LG D V V G LG+ A R+
Sbjct: 93 AVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDG--TLGYEPLAPYDRI 150
Query: 186 LVT 188
T
Sbjct: 151 YTT 153
>3plo_X DNA-invertase; resolvase, helix-turn-helix, serine recombinase,
recombination; 3.80A {Enterobacteria phage MU}
Length = 193
Score = 26.0 bits (58), Expect = 8.9
Identities = 9/42 (21%), Positives = 14/42 (33%), Gaps = 1/42 (2%)
Query: 69 RRHALTSRQQVLLTLHWLGNGAQYHITADAHGVSKSTVQRTV 110
R LT + L G A + V+ ST+ +
Sbjct: 139 RPPKLTKAEWEQA-GRLLAQGIPRKQVALIYDVALSTLYKKH 179
>3qp6_A CVIR transcriptional regulator; quorum sensing, agonist,
antagonist, LUXR, acylated homoseri lactone,
transcription factor; HET: HL6; 2.00A {Chromobacterium
violaceum} PDB: 3qp5_A*
Length = 265
Score = 26.0 bits (57), Expect = 9.3
Identities = 10/44 (22%), Positives = 16/44 (36%), Gaps = 2/44 (4%)
Query: 63 LEHPTNRRHALTSRQQVLLTLHWLGNGAQYHITADAHGVSKSTV 106
L + L+ R+ HW+ G A +S+ TV
Sbjct: 188 LPPASPSNMPLSQREYD--IFHWMSRGKTNWEIATILNISERTV 229
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.133 0.392
Gapped
Lambda K H
0.267 0.0805 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,159,647
Number of extensions: 185312
Number of successful extensions: 596
Number of sequences better than 10.0: 1
Number of HSP's gapped: 591
Number of HSP's successfully gapped: 83
Length of query: 207
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 118
Effective length of database: 4,216,824
Effective search space: 497585232
Effective search space used: 497585232
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (24.8 bits)