RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10774
(207 letters)
>d1m3ka2 c.95.1.1 (A:269-392) Biosynthetic thiolase {Zoogloea
ramigera [TaxId: 350]}
Length = 124
Score = 110 bits (275), Expect = 1e-31
Identities = 53/91 (58%), Positives = 66/91 (72%)
Query: 113 PTLMGTGPIPAVNAVLAKAGWSKEEVDLFELNEAFAAQSIACLRELGLDEAKVNVSGGAI 172
P +MGTGPIPA L +AGW ++DL E NEAFAAQ+ A ++LG D + VNV+GGAI
Sbjct: 17 PKVMGTGPIPASRKALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAI 76
Query: 173 ALGHPIGASGTRVLVTLLYALKRLNKSKGCA 203
A+GHPIGASG R+L TLL+ +KR KG A
Sbjct: 77 AIGHPIGASGARILNTLLFEMKRRGARKGLA 107
>d1ulqa2 c.95.1.1 (A:276-400) Beta-ketoadipyl CoA thiolase {Thermus
thermophilus [TaxId: 274]}
Length = 125
Score = 95.8 bits (238), Expect = 2e-26
Identities = 47/93 (50%), Positives = 66/93 (70%), Gaps = 2/93 (2%)
Query: 113 PTLMGTGPIPAVNAVLAKAGWSKEEVDLFELNEAFAAQSIACLRE--LGLDEAKVNVSGG 170
P +MG GP+PA L +AG S ++ L ELNEAFAAQ++A LRE L +++ ++N +GG
Sbjct: 16 PRIMGIGPVPATRKALERAGLSFSDLGLIELNEAFAAQALAVLREWSLSMEDQRLNPNGG 75
Query: 171 AIALGHPIGASGTRVLVTLLYALKRLNKSKGCA 203
AIALGHP+GASG R+L TL++ ++R G A
Sbjct: 76 AIALGHPLGASGARILTTLVHEMRRRKVQFGLA 108
>d1afwa2 c.95.1.1 (A:294-417) Thiolase {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 124
Score = 95.0 bits (236), Expect = 6e-26
Identities = 43/91 (47%), Positives = 60/91 (65%), Gaps = 2/91 (2%)
Query: 113 PTLMGTGPIPAVNAVLAKAGWSKEEVDLFELNEAFAAQSIACLRELGLDEAKVNVSGGAI 172
P +MG GP A+ VL G +++D+FE+NEAFAAQ++ C+ +LG+D KVN GGAI
Sbjct: 19 PEIMGVGPAYAIPKVLEATGLQVQDIDIFEINEAFAAQALYCIHKLGIDLNKVNPRGGAI 78
Query: 173 ALGHPIGASGTRVLVTLLYALKRLNKSKGCA 203
ALGHP+G +G R + T+L LK+ G
Sbjct: 79 ALGHPLGCTGARQVATILRELKK--DQIGVV 107
>d1wdkc2 c.95.1.1 (C:264-391) Fatty oxidation complex beta subunit
(3-ketoacyl-CoA thiolase) {Pseudomonas fragi [TaxId:
296]}
Length = 128
Score = 82.4 bits (203), Expect = 5e-21
Identities = 43/94 (45%), Positives = 59/94 (62%), Gaps = 3/94 (3%)
Query: 113 PTLMGTGPIPAVNAVLAKAGWSKEEVDLFELNEAFAAQSIACLREL---GLDEAKVNVSG 169
P +MG GP+PA L +AG + ++D ELNEAFAAQ++ L++L KVN+ G
Sbjct: 18 PAIMGYGPVPATQKALKRAGLNMADIDFIELNEAFAAQALPVLKDLKVLDKMNEKVNLHG 77
Query: 170 GAIALGHPIGASGTRVLVTLLYALKRLNKSKGCA 203
GAIALGHP G SG R+ TLL +K+ + G +
Sbjct: 78 GAIALGHPFGCSGARISGTLLNVMKQNGGTFGLS 111
>d2d0oa2 c.55.1.6 (A:1-92,A:255-403) Diol dehydratase-reactivating
factor large subunit DdrA {Klebsiella oxytoca [TaxId:
571]}
Length = 241
Score = 31.3 bits (71), Expect = 0.057
Identities = 14/58 (24%), Positives = 21/58 (36%), Gaps = 1/58 (1%)
Query: 90 AQYHITADAHGVSKSTVQRTVHKPTLMGT-GPIPAVNAVLAKAGWSKEEVDLFELNEA 146
A + + T K TL G A+ V AG + ++ L +NEA
Sbjct: 19 ATLDEAGALTITHSALAETTGIKGTLRNVFGIQEALALVARGAGIAVSDISLIRINEA 76
>d1ryba_ c.56.3.1 (A:) Chloroplast group II intron splicing factor
Crs2 {Maize (Zea mays) [TaxId: 4577]}
Length = 191
Score = 28.5 bits (63), Expect = 0.40
Identities = 11/83 (13%), Positives = 24/83 (28%), Gaps = 4/83 (4%)
Query: 87 GNGAQYHITADAHGVSKSTVQRTVHKPTLMGTGPIPAVNAVLAKAGWSKEEVDLFELNEA 146
G+G + + + G + +L K +S EE +
Sbjct: 109 GHGRHNGLQNVIEHLDGRREFPRLSIGIGSPPGKMDPRAFLLQK--FSSEERVQIDTALE 166
Query: 147 FAAQSIACLRELGLDEA--KVNV 167
++ L G + + N+
Sbjct: 167 QGVDAVRTLVLKGFSGSTERFNL 189
>d1xsva_ a.4.13.3 (A:) Hypothetical protein SAV1236 {Staphylococcus
aureus, strain Mu50 / ATCC 700699 [TaxId: 1280]}
Length = 106
Score = 27.1 bits (60), Expect = 0.77
Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 73 LTSRQQVLLTLHWLGNGAQYHITADAHGVSKSTVQRTVHK 112
LT++Q+ L L +L AD VS+ V + +
Sbjct: 19 LTNKQRNYLELFYL-EDYSLSEIADTFNVSRQAVYDNIRR 57
>d1s7oa_ a.4.13.3 (A:) Hypothetical protein SPy1201 {Streptococcus
pyogenes [TaxId: 1314]}
Length = 106
Score = 26.7 bits (59), Expect = 0.91
Identities = 10/40 (25%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 73 LTSRQQVLLTLHWLGNGAQYHITADAHGVSKSTVQRTVHK 112
LT +Q + L++ + AD GVS+ V + +
Sbjct: 17 LTDKQMNYIELYYA-DDYSLAEIADEFGVSRQAVYDNIKR 55
>d2ccva1 b.154.1.1 (A:1-99) Agglutinin HPA {Roman snail (Helix
pomatia) [TaxId: 6536]}
Length = 99
Score = 25.6 bits (56), Expect = 2.4
Identities = 5/30 (16%), Positives = 9/30 (30%), Gaps = 2/30 (6%)
Query: 7 PLWSDSEEDGPQEEGIRHQVFRARVNFNTA 36
W+ D P + R + F +
Sbjct: 13 AGWAKVPSDDPGRDNTRE--LAKNITFASP 40
>d1ijwc_ a.4.1.2 (C:) HIN recombinase (DNA-binding domain)
{Synthetic}
Length = 47
Score = 24.2 bits (53), Expect = 2.8
Identities = 10/40 (25%), Positives = 15/40 (37%), Gaps = 1/40 (2%)
Query: 69 RRHALTSRQQVLLTLHWLGNGAQYHITADAHGVSKSTVQR 108
R A+ +Q + L G A G+ ST+ R
Sbjct: 2 RPRAINKHEQEQI-SRLLEKGHPRQQLAIIFGIGVSTLYR 40
>d1u0ma2 c.95.1.2 (A:202-349) Putative polyketide synthase SCO1206
{Streptomyces coelicolor [TaxId: 1902]}
Length = 148
Score = 25.0 bits (54), Expect = 5.8
Identities = 7/43 (16%), Positives = 16/43 (37%)
Query: 122 PAVNAVLAKAGWSKEEVDLFELNEAFAAQSIACLRELGLDEAK 164
PA+ + + GW ++D + ++ L +D
Sbjct: 47 PALKELAGEHGWDASDLDFYIVHAGGPRILDDLSTFLEVDPHA 89
>d1p4wa_ a.4.6.2 (A:) Transcriptional regulator RcsB {Erwinia
amylovora [TaxId: 552]}
Length = 87
Score = 24.1 bits (52), Expect = 6.2
Identities = 9/59 (15%), Positives = 18/59 (30%), Gaps = 6/59 (10%)
Query: 50 DVVEQILTTVSPFLEHPTNRRHALTSRQQVLLTLHWLGNGAQYHITADAHGVSKSTVQR 108
+ V ++L +S L+ ++ +L G A S T+
Sbjct: 4 ESVAKLLEKISA----GGYGDKRLSPKESEVL--RLFAEGFLVTEIAKKLNRSIKTISS 56
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.133 0.392
Gapped
Lambda K H
0.267 0.0500 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 736,775
Number of extensions: 31072
Number of successful extensions: 134
Number of sequences better than 10.0: 1
Number of HSP's gapped: 132
Number of HSP's successfully gapped: 15
Length of query: 207
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 126
Effective length of database: 1,295,466
Effective search space: 163228716
Effective search space used: 163228716
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.0 bits)