Query psy10776
Match_columns 803
No_of_seqs 247 out of 608
Neff 5.1
Searched_HMMs 46136
Date Fri Aug 16 18:12:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10776.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10776hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd06071 Beach BEACH (Beige and 100.0 1E-104 3E-109 838.8 20.2 274 513-798 1-275 (275)
2 PF02138 Beach: Beige/BEACH do 100.0 2E-102 5E-107 821.3 17.3 270 513-798 1-270 (270)
3 KOG1787|consensus 100.0 2.9E-79 6.2E-84 728.9 6.0 350 434-800 385-752 (1126)
4 KOG1786|consensus 100.0 4E-56 8.7E-61 539.5 6.2 340 453-799 258-627 (1081)
5 KOG1786|consensus 100.0 1.9E-50 4E-55 490.2 6.6 353 174-735 729-1081(1081)
6 PF14844 PH_BEACH: PH domain a 99.7 1.1E-17 2.3E-22 153.9 8.3 105 308-495 1-105 (106)
7 cd01201 Neurobeachin Neurobeac 99.6 5.3E-16 1.1E-20 143.5 7.8 105 307-495 1-105 (108)
8 KOG1787|consensus 99.6 4.7E-17 1E-21 196.9 -1.5 260 512-796 854-1117(1126)
9 KOG1788|consensus 99.3 8.2E-13 1.8E-17 154.2 2.3 178 191-388 2444-2739(2799)
10 PF06469 DUF1088: Domain of Un 98.3 2.6E-06 5.7E-11 84.7 10.3 77 186-264 43-123 (169)
11 PF14470 bPH_3: Bacterial PH d 88.0 6.6 0.00014 34.9 10.6 39 303-341 1-39 (96)
12 smart00568 GRAM domain in gluc 86.3 1.4 3E-05 36.6 4.8 38 303-341 2-39 (61)
13 PF02893 GRAM: GRAM domain; I 85.1 0.89 1.9E-05 38.7 3.2 39 303-341 9-47 (69)
14 cd01257 PH_IRS Insulin recepto 42.4 60 0.0013 30.4 5.7 49 447-496 51-99 (101)
15 cd01264 PH_melted Melted pleck 36.9 65 0.0014 30.3 5.0 49 447-496 46-98 (101)
16 PF03941 INCENP_ARK-bind: Inne 29.9 23 0.0005 29.7 0.7 30 701-740 16-45 (57)
17 PF06713 bPH_4: Bacterial PH d 25.1 1.4E+02 0.0029 26.3 4.7 48 448-498 21-73 (74)
18 cd01245 PH_RasGAP_CG5898 RAS G 21.4 1.7E+02 0.0037 27.4 4.8 35 462-497 62-97 (98)
19 PF06115 DUF956: Domain of unk 21.1 7.9E+02 0.017 24.1 9.3 33 305-338 5-37 (118)
No 1
>cd06071 Beach BEACH (Beige and Chediak-Higashi) domains, implicated in membrane trafficking, are present in a family of proteins conserved throughout eukaryotes. This group contains human lysosomal trafficking regulator (LYST), LPS-responsive and beige-like anchor (LRBA) and neurobeachin. Disruption of LYST leads to Chediak-Higashi syndrome, characterized by severe immunodeficiency, albinism, poor blood coagulation and neurologic problems. Neurobeachin is a candidate gene linked to autism. LBRA seems to be upregulated in several cancer types. It has been shown that the BEACH domain itself is important for the function of these proteins.
Probab=100.00 E-value=1.4e-104 Score=838.76 Aligned_cols=274 Identities=50% Similarity=0.937 Sum_probs=260.2
Q ss_pred HHhhhcCCCChHHHHHHHHhhcCCCCCCCCCCcccceeecCCCCCCCCCCCCccccCCCCcccccCchhHHHHHHHHHHH
Q psy10776 513 IQLWREGHLTNWAYLMILNKMAGRSYNDLMQYPVLPFILSDYKSATLDLTDPKSFRNLKKPMAVQDKKNESHYVNNYNYL 592 (803)
Q Consensus 513 t~~W~~g~ISNFeYLm~LN~lAGRSfnDl~qYPVFPWVl~Dy~S~~lDL~~~~~fRDLsKPiga~~~~r~~~~~~~y~~l 592 (803)
|++|++|+||||||||+||.+|||||||++||||||||++||+|++|||+|+.+||||||||||++++|++.+.++|+.+
T Consensus 1 T~~W~~g~iSNfeYL~~LN~~sGRSf~D~sqYPIfPWvi~dy~s~~ldl~~~~~~RDLskpigal~~~r~~~~~~~~~~~ 80 (275)
T cd06071 1 TKKWQNGEISNFEYLMYLNTLAGRSFNDLSQYPIFPWVISDYTSEELDLNDPSTYRDLSKPIGALNKERLQLLKERYESD 80 (275)
T ss_pred CchhhcCCccHHHHHHHHHHHhCCCCCCcccCCccCeeecCCCCcccccCCcccccCCCCchhhcCHHHHHHHHHHHhhh
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999754
Q ss_pred HHHhhhcCCCCCCCCcccCCCCCChhhHHhhhcccCCcchhhhhhcCCCCCCCCCcccCHHHHHhhhccCCcCccccccc
Q psy10776 593 AREMCDAVGGVNQEPYHYGSHYSNSGTVLHFLVRIPPFTSMFLNYQDNNFDLPDRTFHNLATTWRLTSSESTTDVKELIP 672 (803)
Q Consensus 593 ~~~~~~~~~~~~~~p~hygshYS~~~~Vl~yLvRlePFt~~~l~lQ~g~FD~~dR~F~SI~~~w~~~s~~s~~DvkELIP 672 (803)
. ....++||||+|||++++|++||+|++|||++|+.+|+|+||+|||+|+||.++|++++. .++|++||||
T Consensus 81 ~--------~~~~~~~~y~shyS~~~~V~~yLvR~ePft~~~~~lq~g~fd~~~RlF~si~~~~~~~~~-~~~d~~ELIP 151 (275)
T cd06071 81 S--------DDSDPPFHYGSHYSNPAIVLYYLVRLEPFTTLHLSLQGGHFDAADRLFNSIPSSWRSASE-NPSDVKELIP 151 (275)
T ss_pred c--------ccCCCCCCCCCCCCCHHHHHHHHhHcCCccHHHHHHhcCCcCCcccchhhHHHHHHHHHc-cCCCcccCCc
Confidence 3 235789999999999999999999999999999999999999999999999999998764 4899999999
Q ss_pred cccccccccccCCCCCcccccCCCccCceecCCCCCChHHHHHHHHHHhhhhhhhcccchhhHhHhcccccchhHhhccC
Q psy10776 673 ELFYLADILVNNEGFDFGVRQNGQRVDSVILPPWAPDPRTFIMVHRQSLESELVSENLPHWIDLVFGYKQSGKAAVDAIN 752 (803)
Q Consensus 673 EFF~~PEfl~N~n~~~fG~~q~g~~v~DV~LP~Wa~sp~~FI~~hR~ALES~~VS~~Lh~WIDLIFGyKQ~G~~Av~a~N 752 (803)
||||+||||+|.|+++||+ |+|+.|+||+||+||++|.+||++||+||||+|||++||+||||||||||+|++|++|.|
T Consensus 152 EFf~~Pe~f~N~n~~~lg~-~~g~~~~DV~LP~Wa~s~~~FV~~~R~aLES~~VS~~L~~WIDLIFG~kq~G~~A~~a~N 230 (275)
T cd06071 152 EFYYLPEFFLNINKFDFGK-QDGEKVNDVELPPWAKSPEEFIRKHREALESEYVSKNLHHWIDLIFGYKQRGEEAVKAKN 230 (275)
T ss_pred hHhcCHHHHhCCCcccccc-cCCCcccceecCCCcCCHHHHHHHHHHHHcccHhhhhhhhhhhhhcccccCCHHHHHhcC
Confidence 9999999999999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccccc-ccCCCCCHHHHHHHHHHhHhcCCcccccccCCCCcc
Q psy10776 753 VFHPATYYGF-DIAAIPDPLERTAWETMIRTYGQTPRQLFKSAHPMN 798 (803)
Q Consensus 753 vF~p~tY~~~-d~~~i~D~~~r~a~e~~i~~fGQ~P~QLF~~pHP~r 798 (803)
||||++|++. +.+..+ .++.++++++.+|||||.|||++|||+|
T Consensus 231 vf~p~~Y~~~~~~~~~~--~~~~~~~~~~~~~Gq~P~QLF~~pHP~R 275 (275)
T cd06071 231 VFHPLTYEGSVDLDSID--VEREAIEAQINNFGQTPVQLFTKPHPKR 275 (275)
T ss_pred CCcccccCCccccchhh--HHHHHHHHHHHhcCCCcchhccCCCCCC
Confidence 9999999984 333322 7789999999999999999999999997
No 2
>PF02138 Beach: Beige/BEACH domain; InterPro: IPR000409 The BEACH domain is found in eukaryotic proteins that have diverse cellular functions ranging from lysosomal traffic to apoptosis and cytokinesisin vesicle trafficking, membrane dynamics, and receptor signaling. The name BEACH is derived from beige and Chediak-Higashi syndrome (CHS). CHS is a rare, autosomal recessive disorder that can cause severe immunodeficiency and albinism in humans and other mammals, and beige is the name for the CHS disease in mice [, ]. The BEACH domain was first described in the lysosomal-trafficking regulators Beige protein and its human homologue CHS protein Q99698 from SWISSPROT. It is also found in distantly related proteins like, for example, the FAN proteins O35242 from SWISSPROT and Q92636 from SWISSPROT which are factor associated with neutral sphingomyelinase activation []. It has also been described in Dictyostelium proteins Lvs []. The BEACH domain is usually followed by a series of WD repeats (PDOC00574 from PROSITEDOC). The function of the BEACH domain is unknown.; PDB: 1MI1_B 1T77_C.
Probab=100.00 E-value=2.5e-102 Score=821.33 Aligned_cols=270 Identities=50% Similarity=0.949 Sum_probs=197.6
Q ss_pred HHhhhcCCCChHHHHHHHHhhcCCCCCCCCCCcccceeecCCCCCCCCCCCCccccCCCCcccccCchhHHHHHHHHHHH
Q psy10776 513 IQLWREGHLTNWAYLMILNKMAGRSYNDLMQYPVLPFILSDYKSATLDLTDPKSFRNLKKPMAVQDKKNESHYVNNYNYL 592 (803)
Q Consensus 513 t~~W~~g~ISNFeYLm~LN~lAGRSfnDl~qYPVFPWVl~Dy~S~~lDL~~~~~fRDLsKPiga~~~~r~~~~~~~y~~l 592 (803)
|++|++|+||||||||.||.+|||||||++||||||||++||+|++|||+|+..||||+||||||+++|+++++++|+++
T Consensus 1 T~~W~~g~iSNfeYL~~LN~~aGRSf~D~sqYPIFPWv~~dy~s~~ldl~~~~~~RdLskPiga~~~~r~~~~~~~~~~~ 80 (270)
T PF02138_consen 1 TEKWQNGEISNFEYLMYLNILAGRSFNDLSQYPIFPWVISDYDSEELDLNDPSNYRDLSKPIGAQNEERLEKLKERYEEM 80 (270)
T ss_dssp HHHHHTTSS-HHHHHHHHHHHCT--TT-GGG---B---B---SSSS--TT-GGGB--TTS-HHHCSHHHHHHHHHHHHC-
T ss_pred CcchhcCCCcHHHHHHHHhHHhccCCCCCccCccccchhccCCccccccCCccccccccccccccCHHHHHHHHHHHHhh
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999863
Q ss_pred HHHhhhcCCCCCCCCcccCCCCCChhhHHhhhcccCCcchhhhhhcCCCCCCCCCcccCHHHHHhhhccCCcCccccccc
Q psy10776 593 AREMCDAVGGVNQEPYHYGSHYSNSGTVLHFLVRIPPFTSMFLNYQDNNFDLPDRTFHNLATTWRLTSSESTTDVKELIP 672 (803)
Q Consensus 593 ~~~~~~~~~~~~~~p~hygshYS~~~~Vl~yLvRlePFt~~~l~lQ~g~FD~~dR~F~SI~~~w~~~s~~s~~DvkELIP 672 (803)
. ...++||||+|||++++|++||+|++|||++++.+|+|+||+|||+|+||+.+|+.++ ++++|++||||
T Consensus 81 ~---------~~~~~~~y~s~ys~~~~v~~~L~R~ePft~l~~~lq~g~fD~~~r~F~SI~~~~~~~~-~~~~d~~EliP 150 (270)
T PF02138_consen 81 E---------EFEPPFHYGSHYSSPGTVLYYLVRLEPFTSLHIDLQSGKFDVPDRLFSSIEDTWNSVT-ENMNDVKELIP 150 (270)
T ss_dssp ----------SSS---SBSS-SS-HHHHHHHTTTSTTHHHHHHHCCTTS---CCCSS-BHHHHHHHHH-H-TT----B-G
T ss_pred h---------ccCCCccccCCCCCcchhhhhhcccChHHHHHHHHhccccCCchHHHHHHHHHHHHhh-cCCccccccCh
Confidence 2 1347999999999999999999999999999999999999999999999999999865 77899999999
Q ss_pred cccccccccccCCCCCcccccCCCccCceecCCCCCChHHHHHHHHHHhhhhhhhcccchhhHhHhcccccchhHhhccC
Q psy10776 673 ELFYLADILVNNEGFDFGVRQNGQRVDSVILPPWAPDPRTFIMVHRQSLESELVSENLPHWIDLVFGYKQSGKAAVDAIN 752 (803)
Q Consensus 673 EFF~~PEfl~N~n~~~fG~~q~g~~v~DV~LP~Wa~sp~~FI~~hR~ALES~~VS~~Lh~WIDLIFGyKQ~G~~Av~a~N 752 (803)
|||++||||+|.|+|+||+ |+.|+||+||+||+||++||++||+||||+|||++||+||||||||||+|++|++|.|
T Consensus 151 Eff~~Pe~f~N~n~~~~g~---~~~~~dV~LP~Wa~s~~~FV~~~R~aLES~~VS~~L~~WIDLIFG~kq~G~~A~~a~N 227 (270)
T PF02138_consen 151 EFFYLPEFFKNINNFDLGK---GEDVDDVELPPWAKSPFEFVYKHRKALESDYVSQNLHHWIDLIFGYKQRGKEAVEAKN 227 (270)
T ss_dssp GGGT-GGGGS-TT-SS--B---S-B-SS-B--TT-SSHHHHHHHHHHHHCSHHHHTTHHHHHHHHTSCCCSCHHHHHTT-
T ss_pred hhhCCHHHhcccccccccC---CCccceeecCCccchHHHHHHHHHHHHhhhHHHhhhhHHHHHhhCcccccHHHHHHhh
Confidence 9999999999999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccccccCCCCCHHHHHHHHHHhHhcCCcccccccCCCCcc
Q psy10776 753 VFHPATYYGFDIAAIPDPLERTAWETMIRTYGQTPRQLFKSAHPMN 798 (803)
Q Consensus 753 vF~p~tY~~~d~~~i~D~~~r~a~e~~i~~fGQ~P~QLF~~pHP~r 798 (803)
||||++|++.. +.|+.++.++++++.+|||||.|||++|||+|
T Consensus 228 vf~p~~Y~~~~---~~~~~~~~~~~~~~~~~Gq~P~QLF~~pHP~R 270 (270)
T PF02138_consen 228 VFHPLTYEDSW---IEDPMEREAIEAQLKNFGQVPIQLFTKPHPKR 270 (270)
T ss_dssp -B-CCCSTTS------SHHHHHHHHHHHHHC--------SS-----
T ss_pred cccccCCCccc---cCCHHHHHHHHHHHHhcCCChHHHhCCCCCCC
Confidence 99999999855 67799999999999999999999999999998
No 3
>KOG1787|consensus
Probab=100.00 E-value=2.9e-79 Score=728.94 Aligned_cols=350 Identities=40% Similarity=0.689 Sum_probs=320.9
Q ss_pred CCCCeeeecCccccccccCeeeEecccccCcccEEEEEEeCCcEEEEEeCCcchHHHHHHHhhhC------C--CCCC--
Q psy10776 434 DTEGIVYRTDDIISVQFTNIKEIHNRRYNLQEKAIELFLINGKNYLFAFENHNDREHFLNELSTC------N--LPNR-- 503 (803)
Q Consensus 434 ~~~~~~w~~~~~~~I~~~~I~~I~~Rr~~l~~~aiEIf~~~g~s~~l~F~~~~~r~~~~~~l~~~------~--~p~~-- 503 (803)
+..+..|.... |..++.++|.++++++|+|.....++.+.|..+..+.+....+... . +|..
T Consensus 385 ~~~~~k~~~~~--------~~a~~~~~~~~~~~~~~~~~l~~t~l~~~~p~~~~v~~~~~~l~~~~v~~~~g~~~~~~~~ 456 (1126)
T KOG1787|consen 385 EELHGKRLLEL--------ISAQFLQSILLHNISLDVFPLRRTSLMFESPSQDAVKRSGLLLPALGVLTSVGLVLPQRRL 456 (1126)
T ss_pred ccccchHHHHH--------HHHHHHHHHhccchhhhHHHHHhhhhhhccCCccchhcccccccceeeeeeccccccchhh
Confidence 34566777777 9999999999999999999999999999999986665554443321 1 1110
Q ss_pred Cc----c--ccHHHHHHhhhcCCCChHHHHHHHHhhcCCCCCCCCCCcccceeecCCCCCCCCCCCCccccCCCCccccc
Q psy10776 504 MS----S--DLLSDTIQLWREGHLTNWAYLMILNKMAGRSYNDLMQYPVLPFILSDYKSATLDLTDPKSFRNLKKPMAVQ 577 (803)
Q Consensus 504 ~~----~--~~~~~~t~~W~~g~ISNFeYLm~LN~lAGRSfnDl~qYPVFPWVl~Dy~S~~lDL~~~~~fRDLsKPiga~ 577 (803)
+. . ...+.+|.+|+.|+||||+|||.||+.|||||||++||||||||+.||.|+++|++.+.+||||+||||+.
T Consensus 457 ~~~~~P~qm~k~~~~t~~w~~~~~s~~~~l~~l~t~agrsyndl~qypvfpwvl~dy~s~~ld~s~~~~frdlsKpigal 536 (1126)
T KOG1787|consen 457 ISAATPVQMAKNSGITQEWQAREISNFEVLMQLNTSAGRSYNDLTQYPVFPWVLRDYSSETLDLSKLSTFRDLSKPIGAL 536 (1126)
T ss_pred hhhhCHHHHHHhcCccHHHHhhccccHHHHHHHHhccCcccCccccCCCCCeeeecccchhhhcccchhHHhhcCcccCC
Confidence 00 0 11236899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHHhhhcCCCCCCCCcccCCCCCChhhHHhhhcccCCcchhhhhhcCCCCCCCCCcccCHHHHHh
Q psy10776 578 DKKNESHYVNNYNYLAREMCDAVGGVNQEPYHYGSHYSNSGTVLHFLVRIPPFTSMFLNYQDNNFDLPDRTFHNLATTWR 657 (803)
Q Consensus 578 ~~~r~~~~~~~y~~l~~~~~~~~~~~~~~p~hygshYS~~~~Vl~yLvRlePFt~~~l~lQ~g~FD~~dR~F~SI~~~w~ 657 (803)
|++|...|.+||+.++ ++.++.||||+|||+++.|++||+|++|||++|+++|+|+||++||.|+|++..|+
T Consensus 537 n~~~~~~f~dry~s~~--------D~~i~~~~~~thys~~~~~l~~l~rvepf~S~~~~l~~gkfd~~dr~~~sv~~~~r 608 (1126)
T KOG1787|consen 537 NPKRAYLFRDRYESFE--------DQAIPSFHYGTHYSSAANVLAYLLRVEPFTSLHLQLQDGKFDHADRAFSSVASSWR 608 (1126)
T ss_pred CcccchhHhhhhhccc--------cccccccccccccccccceeeeeeecCccccccccccccccccchhhHHHHHHHHh
Confidence 9999999999998765 45789999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCcCccccccccccccccccccCCCCCcccccCCCccCceecCCCCCChHHHHHHHHHHhhhhhhhcccchhhHhH
Q psy10776 658 LTSSESTTDVKELIPELFYLADILVNNEGFDFGVRQNGQRVDSVILPPWAPDPRTFIMVHRQSLESELVSENLPHWIDLV 737 (803)
Q Consensus 658 ~~s~~s~~DvkELIPEFF~~PEfl~N~n~~~fG~~q~g~~v~DV~LP~Wa~sp~~FI~~hR~ALES~~VS~~Lh~WIDLI 737 (803)
.+ ..+++|||||||||||+||+|.|.+.+.+|.+++|++|.||.|||||++|++|+..||+||||+|||.++|.|||||
T Consensus 609 ~~-l~d~sdvkelipeffy~p~ll~~~~~~~lg~~~dg~~vi~v~lppwa~~pe~f~~~nr~aLes~fvs~~l~~widli 687 (1126)
T KOG1787|consen 609 RC-LRDTSDVKELIPEFFYFPELLVNSNLYNLGVRVDGEPVIDVVLPPWAKSPEDFETRNREALESEFVSCQLHQWIDLI 687 (1126)
T ss_pred hh-ccchhhHHHhhhHHHHHHHHHhccccccceeecCCccceeeecccccCCHHHHHHHHHHHhhccccccccchhHHhh
Confidence 75 58899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccchhHhhccCCCCCccccc-cccCCCCCHHHH-HHHHHHhHhcCCcccccccCCCCcccc
Q psy10776 738 FGYKQSGKAAVDAINVFHPATYYG-FDIAAIPDPLER-TAWETMIRTYGQTPRQLFKSAHPMNVK 800 (803)
Q Consensus 738 FGyKQ~G~~Av~a~NvF~p~tY~~-~d~~~i~D~~~r-~a~e~~i~~fGQ~P~QLF~~pHP~r~~ 800 (803)
|||||+|++|++|.|||+++||+| ++.+.++|++++ .+++++|.+|||+|.|+|.++||+|+-
T Consensus 688 fg~Kq~g~ea~~a~nvf~~~tyeG~v~~~~~~d~~~~~eai~~~i~~f~~~~~~~~~e~~~~~~~ 752 (1126)
T KOG1787|consen 688 FGYKQRGPEAVRAMNVFYYLTYEGAVDLDSITDQVLRTEAIEAQIASFGQTPSQLLQEQHPPRAS 752 (1126)
T ss_pred hhHhhcCHHHHHhhhhhccCCccccccccccCChhHHHHHHHHHHhhccccchhhhhhccCCcch
Confidence 999999999999999999999999 899999999999 799999999999999999999999874
No 4
>KOG1786|consensus
Probab=100.00 E-value=4e-56 Score=539.47 Aligned_cols=340 Identities=34% Similarity=0.539 Sum_probs=310.5
Q ss_pred eeeEecccccCcccEEEEEEeCCcEEEEEeCCcchHHHHHHHhhhCCCC--------------CCCcc--------ccHH
Q psy10776 453 IKEIHNRRYNLQEKAIELFLINGKNYLFAFENHNDREHFLNELSTCNLP--------------NRMSS--------DLLS 510 (803)
Q Consensus 453 I~~I~~Rr~~l~~~aiEIf~~~g~s~~l~F~~~~~r~~~~~~l~~~~~p--------------~~~~~--------~~~~ 510 (803)
+..+++|.++++..|.++|-.+|....+.++. ..|..+++.+-....+ ..... ....
T Consensus 258 ~~~~~~r~~l~~~~~~~~~~~~~~~~~~~~~~-~i~~~lf~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 336 (1081)
T KOG1786|consen 258 ISLVLKRLVLLRLIALSVFSSLGRVTLLVLPK-LIRKSLFDKLLAHPSRENSSGLLELCLRFPMLLSGGFRLLSRFKSLK 336 (1081)
T ss_pred hhhHHHHHHHhhhhHHHhhhcccceeecccch-hHHhhhhhhhhccCccccchhhhhhcchhhhhhhccccccchhhhhh
Confidence 88999999999999999999999999999997 4777777776543211 00000 1147
Q ss_pred HHHHhhhcCCCChHHHHHHHHhhcCCCCCCCCCCcccceeecCCCCCCCCCCCCccccCCCCcccccCchhHHHHHHHHH
Q psy10776 511 DTIQLWREGHLTNWAYLMILNKMAGRSYNDLMQYPVLPFILSDYKSATLDLTDPKSFRNLKKPMAVQDKKNESHYVNNYN 590 (803)
Q Consensus 511 ~~t~~W~~g~ISNFeYLm~LN~lAGRSfnDl~qYPVFPWVl~Dy~S~~lDL~~~~~fRDLsKPiga~~~~r~~~~~~~y~ 590 (803)
.++.+|.+|+++||+|||+||.+|||+++|++||||||||+++|.++.+|++|+.++|++.||+|++++++.+.+..+|+
T Consensus 337 s~~~~W~~~~~~n~~yl~~ln~l~~r~~~~~~~~pi~pw~~~~~~~~~l~~~d~~~~r~~~~~~~~~s~e~~~~~~~r~~ 416 (1081)
T KOG1786|consen 337 SAFGRWLSGELENFQYLMHLNTLAGRSIADLAQYPIFPWVLAFYDFSGLDLLDPLTARKLLKLGGHQSDEGYERFAKRFE 416 (1081)
T ss_pred hhhcccccCchhhhhhhhhcCcccccchhhhccCcccceeeccccccchhhcChHhhhhhhhccCCCCHHHHHHHhhhhh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHhhhcCCCCCCCCcccCCCCCChhhHHhhhcccCCcchhhhhhcCCCCCCCCCcccCHHHHHhhhccCCc-Ccccc
Q psy10776 591 YLAREMCDAVGGVNQEPYHYGSHYSNSGTVLHFLVRIPPFTSMFLNYQDNNFDLPDRTFHNLATTWRLTSSEST-TDVKE 669 (803)
Q Consensus 591 ~l~~~~~~~~~~~~~~p~hygshYS~~~~Vl~yLvRlePFt~~~l~lQ~g~FD~~dR~F~SI~~~w~~~s~~s~-~DvkE 669 (803)
++.+- +...+.|||++||+++++|..|++|..|++..++.+++|.|+.+||+|+|...+|..+...++ +|++|
T Consensus 417 ~~~d~------~~~~~~~~~~t~~~S~~~~~~y~~r~~p~~~~~~~i~~~~~~~~d~~~~s~~~~Wt~~~~~~~~~~i~e 490 (1081)
T KOG1786|consen 417 EWLDQ------NAEDPLFHVLTHLLSPLIVMSYFARKNPLSELFLSIRRGYFPIADRLFHSRMQAWTPDEKGNLHSCIKE 490 (1081)
T ss_pred hhhcc------ccccccccccccccchhhhhhhhhhcCcchHHHHHhhcccccccchhhhhhhcccCcccccccchhHHH
Confidence 76421 115778999999999999999999999999999999999999999999999999987653344 69999
Q ss_pred ccccccccccccccCCCCCcccccCCCccCceecCCCCC-ChHHHHHHHHHHhhhhhhhcccchhhHhH-hcccccchhH
Q psy10776 670 LIPELFYLADILVNNEGFDFGVRQNGQRVDSVILPPWAP-DPRTFIMVHRQSLESELVSENLPHWIDLV-FGYKQSGKAA 747 (803)
Q Consensus 670 LIPEFF~~PEfl~N~n~~~fG~~q~g~~v~DV~LP~Wa~-sp~~FI~~hR~ALES~~VS~~Lh~WIDLI-FGyKQ~G~~A 747 (803)
||||||++|+||.|.+.+++|++|+|..++||.|||||. +|++||..||+|||++|||++||+|||++ |||||.|++|
T Consensus 491 li~~~~~~p~~l~n~~~~~lg~~~~~~~~~~~~lP~ws~~~~~~fi~~h~~ale~~~vs~~Lh~wId~~~fgykq~g~~~ 570 (1081)
T KOG1786|consen 491 LIPKFVNDPSFLENSVILDLGEKQNGDSVDDVILPPWSSSSPREFIRDHRKALESNRVSQRLHHWIDLTIFGYKQNGSAA 570 (1081)
T ss_pred HHHHhccChHHHhhhhhhhhhhhcccccccceecCcccccCHHHHHHHHhhcccccchhhccccceeeehhhhhhcchHH
Confidence 999999999999999999999999999999999999995 89999999999999999999999999999 9999999999
Q ss_pred hhccCCCC----Cccccc-cccCCCCCHHHHHHHHHHhHhcCCcccccccCCCCccc
Q psy10776 748 VDAINVFH----PATYYG-FDIAAIPDPLERTAWETMIRTYGQTPRQLFKSAHPMNV 799 (803)
Q Consensus 748 v~a~NvF~----p~tY~~-~d~~~i~D~~~r~a~e~~i~~fGQ~P~QLF~~pHP~r~ 799 (803)
+.+.|||+ +++|++ +|...+.|+....+.++++.+|||+|+|+|.++||.+.
T Consensus 571 ~~~~nv~~~~~~~l~~~~~v~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~~h~~~~ 627 (1081)
T KOG1786|consen 571 VIAMNVFLVSNKHLFYVNSVLNLRGYDPLEQNILIVSNNHFKQTIKQLFPKKHSVSE 627 (1081)
T ss_pred HHHHHHHhhhhhhhccccchhhhcccchhhhhhhHHHhhccccchhhcccccccccc
Confidence 99999999 999998 89999999999999999999999999999999999754
No 5
>KOG1786|consensus
Probab=100.00 E-value=1.9e-50 Score=490.21 Aligned_cols=353 Identities=43% Similarity=0.688 Sum_probs=285.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCCCCCCCCCCCCccccCCCCCchHH
Q psy10776 174 LVRQITDTCIASTQQCLHRQNAVQKTLLGEIKAIYNKQLFTKDVWNRIILNLTHEKAPWYCEESYPKSWQLDDVEGPERI 253 (803)
Q Consensus 174 ~~~~~~~~~~~~t~~~~~~q~~~~k~~~~~~~~~~~~~~~a~~~W~~ii~qLThErg~W~~pes~p~~WqLD~TEGP~R~ 253 (803)
.+.+|...-+++|+.....|+.+ +......-.....|..++.+++|++++|+..+...+.|.+|.||+|+|.
T Consensus 729 ~~~~~l~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~ 800 (1081)
T KOG1786|consen 729 LISEILAEQSQITSKGALDQRSE--------RTLVTGDTSSSIKVLEVIPQKTHQRARWHKDERAECSHTLDITELENRE 800 (1081)
T ss_pred hHHHHHHhhhhhhhhhhhhhhhc--------cceeeccccceeehhhcccchhhhcccccchHHHhhhccccceecccch
Confidence 44455555566666665555544 5556667778899999999999999999999999999999999999999
Q ss_pred HHHHhhccccCcccccChhhhccccccCcCCcccccccCcccccchhhhcCCCCceeEEEeEEEeeccceeeeEEEeecc
Q psy10776 254 RIRQKRCHLYVHEKYLKPEYRAKTAAYKKEQPLEYLVKDSIKHESMIETIHTSESVTYMCCTHLITPSKQIQGELLITSA 333 (803)
Q Consensus 254 R~RLrR~~~~i~~r~l~pe~~~~~~~~~~~~pl~~l~~~~~~~~s~l~~l~~~EkI~~s~~C~lVtpl~~~~G~LlIg~~ 333 (803)
+++..+||+.++.+... +.
T Consensus 801 ~~~~~~~~~~i~~~~~~------------------------------------------------------------~~- 819 (1081)
T KOG1786|consen 801 SILAAQANLLIPRKSTS------------------------------------------------------------TT- 819 (1081)
T ss_pred hhhhhhhheeecccccc------------------------------------------------------------cc-
Confidence 99999999777433221 00
Q ss_pred eEEEeeCCCCcccccccccccccchhhhhccCCCCCCCCCCCcccccccccccccccccCCCchhhhHHhhhhhhhhhhh
Q psy10776 334 GLKFIPFNESHNFVTNAVTEEFSEHEQVMSEGKNSEEPNETGAETKRIHNAIDEVDISNDVNSDQKIEVRENLSENAAQN 413 (803)
Q Consensus 334 ~LyF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (803)
T Consensus 820 -------------------------------------------------------------------------------- 819 (1081)
T KOG1786|consen 820 -------------------------------------------------------------------------------- 819 (1081)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhHHhhccccccccccCCCCCCCCeeeecCccccccccCeeeEecccccCcccEEEEEEeCCcEEEEEeCCcchHHHHHH
Q psy10776 414 TKVEKLNKKTTTKTKKNVSPDTEGIVYRTDDIISVQFTNIKEIHNRRYNLQEKAIELFLINGKNYLFAFENHNDREHFLN 493 (803)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~s~~~~~~~w~~~~~~~I~~~~I~~I~~Rr~~l~~~aiEIf~~~g~s~~l~F~~~~~r~~~~~ 493 (803)
++.|.+.+ . +|.++.++.|+...+++...+.+.+..+ ..+-.
T Consensus 820 -----------------------~~i~~Ls~--------~------~~~~ql~~~~~~~~~~~i~~~~~~~~~~-~~~~~ 861 (1081)
T KOG1786|consen 820 -----------------------VIIWDLST--------L------RFQRQLTAFEILLSNLRILRLGGENASI-SAFTS 861 (1081)
T ss_pred -----------------------eeeehhhh--------h------hhhhccccccchhHHHHHHHhccchhhh-hhhhh
Confidence 00111111 1 1444556666666666666665555332 01111
Q ss_pred HhhhCCCCCCCccccHHHHHHhhhcCCCChHHHHHHHHhhcCCCCCCCCCCcccceeecCCCCCCCCCCCCccccCCCCc
Q psy10776 494 ELSTCNLPNRMSSDLLSDTIQLWREGHLTNWAYLMILNKMAGRSYNDLMQYPVLPFILSDYKSATLDLTDPKSFRNLKKP 573 (803)
Q Consensus 494 ~l~~~~~p~~~~~~~~~~~t~~W~~g~ISNFeYLm~LN~lAGRSfnDl~qYPVFPWVl~Dy~S~~lDL~~~~~fRDLsKP 573 (803)
. ++.....++....++.|..|.++||+||+.+|.+|||||||++||||||||++||.++.+||.+..+||||++|
T Consensus 862 ~-----~~~~~~~~~~~a~~~~~~~~~~~n~~y~~~~~~~agrs~nd~~q~~v~~~~~ad~~~k~~~l~~~~~~~~~~r~ 936 (1081)
T KOG1786|consen 862 V-----LSANQIIGDLLAITNTWEEGLISNFEYLTMLNLLAGRSFNDWMQYPVFPWVLADYVSKVLDLQDLLIYRDLSRP 936 (1081)
T ss_pred h-----hcccccccchhhhhhhhccccccchHHHHHHHHhhcCcHHHhhcCcceEEEecccceeeEeeeccccccccccc
Confidence 1 11122345667899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCchhHHHHHHHHHHHHHHhhhcCCCCCCCCcccCCCCCChhhHHhhhcccCCcchhhhhhcCCCCCCCCCcccCHH
Q psy10776 574 MAVQDKKNESHYVNNYNYLAREMCDAVGGVNQEPYHYGSHYSNSGTVLHFLVRIPPFTSMFLNYQDNNFDLPDRTFHNLA 653 (803)
Q Consensus 574 iga~~~~r~~~~~~~y~~l~~~~~~~~~~~~~~p~hygshYS~~~~Vl~yLvRlePFt~~~l~lQ~g~FD~~dR~F~SI~ 653 (803)
||+| .+.+. .+..++. ....|||||+|||++++|++|++|+.|||.+++.+|+|.||.|||+|+|+.
T Consensus 937 ~a~~----~~~~~-~~~~~~~--------e~~~~~~~~~~~s~~~~~~~~~~r~~p~~~~~~~~~~~~~~~~dr~f~~l~ 1003 (1081)
T KOG1786|consen 937 IAVQ----KEKLE-EHHSWES--------EDTEPYHYGSHYSNSGTVSHFLIRLPPFTEMFLSLQDGRFDFPDRLFHSLE 1003 (1081)
T ss_pred hhHH----HHHHh-hhhhhhh--------hccCCccccccccCccccccccccCCchHHHHHHhccCcCCCccccccccc
Confidence 9954 22222 2222221 134799999999999999999999999999999999999999999999999
Q ss_pred HHHhhhccCCcCccccccccccccccccccCCCCCcccccCCCccCceecCCCCCChHHHHHHHHHHhhhhhhhcccchh
Q psy10776 654 TTWRLTSSESTTDVKELIPELFYLADILVNNEGFDFGVRQNGQRVDSVILPPWAPDPRTFIMVHRQSLESELVSENLPHW 733 (803)
Q Consensus 654 ~~w~~~s~~s~~DvkELIPEFF~~PEfl~N~n~~~fG~~q~g~~v~DV~LP~Wa~sp~~FI~~hR~ALES~~VS~~Lh~W 733 (803)
.+|..++.++++|+|||+| |||.||++.|.|+++||++|||++|+||.+ -.+|+.||++||.||||+||+.++|+|
T Consensus 1004 ~~~~~~~~~s~td~kel~p-~f~~pe~l~n~~~~d~g~~qn~~~~~~~~~---~~~~~~~i~~hr~al~s~~v~~~~~~~ 1079 (1081)
T KOG1786|consen 1004 TAWSLASIESSTDVKELIP-FFYLPEFLRNRNGFDFGERQNGERVNDVVL---RGDPRSFILIHRQALESEYVSSNLHTW 1079 (1081)
T ss_pred ccccccccccccchhhccc-cccCcceeecCCccccCcccCCCcccceee---ccchHHHHHHHHHhhhcccccccceec
Confidence 9999999999999999999 999999999999999999999999999999 799999999999999999999999999
Q ss_pred hH
Q psy10776 734 ID 735 (803)
Q Consensus 734 ID 735 (803)
||
T Consensus 1080 i~ 1081 (1081)
T KOG1786|consen 1080 ID 1081 (1081)
T ss_pred cC
Confidence 98
No 6
>PF14844 PH_BEACH: PH domain associated with Beige/BEACH; PDB: 1MI1_B 1T77_C.
Probab=99.72 E-value=1.1e-17 Score=153.94 Aligned_cols=105 Identities=32% Similarity=0.591 Sum_probs=77.2
Q ss_pred ceeEEEeEEEeeccceeeeEEEeecceEEEeeCCCCcccccccccccccchhhhhccCCCCCCCCCCCcccccccccccc
Q psy10776 308 SVTYMCCTHLITPSKQIQGELLITSAGLKFIPFNESHNFVTNAVTEEFSEHEQVMSEGKNSEEPNETGAETKRIHNAIDE 387 (803)
Q Consensus 308 kI~~s~~C~lVtpl~~~~G~LlIg~~~LyF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 387 (803)
+|.++++|.+|+|+...+|+|.||+.++||.++...... .. ...
T Consensus 1 ~i~~s~~c~~I~~~~~~~G~l~i~~~~i~F~~~~~~~~~-------------~~-----------------------~~~ 44 (106)
T PF14844_consen 1 KILLSVPCELITPLDSIPGTLIITKSSIYFIPNDNSSEN-------------KI-----------------------SSE 44 (106)
T ss_dssp --SEEEEEEEEETTEEEEEEEEE-SSEEEEEE--TTSHH-------------HH-----------------------CS-
T ss_pred CEEEEEEEEEEEeeeeEEEEEEEeCCEEEEEECCccccc-------------cc-----------------------ccc
Confidence 588999999999999999999999999999988311100 00 000
Q ss_pred cccccCCCchhhhHHhhhhhhhhhhhhhHHhhccccccccccCCCCCCCCeeeecCccccccccCeeeEecccccCcccE
Q psy10776 388 VDISNDVNSDQKIEVRENLSENAAQNTKVEKLNKKTTTKTKKNVSPDTEGIVYRTDDIISVQFTNIKEIHNRRYNLQEKA 467 (803)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~w~~~~~~~I~~~~I~~I~~Rr~~l~~~a 467 (803)
. .......+....|++++ |++|++|||+|+++|
T Consensus 45 ~---------------------------------------~~~~~~~~~~~~w~~~~--------I~~v~~RRyllr~~A 77 (106)
T PF14844_consen 45 N---------------------------------------PSISISKPKSKRWPLSD--------IKEVHKRRYLLRDTA 77 (106)
T ss_dssp H---------------------------------------HHHCC---TCEEEEGGG--------EEEEEEEEETTEEEE
T ss_pred c---------------------------------------ccccccCCceEEEEHHH--------hHHHHHHHhcCcceE
Confidence 0 00011246788999999 999999999999999
Q ss_pred EEEEEeCCcEEEEEeCCcchHHHHHHHh
Q psy10776 468 IELFLINGKNYLFAFENHNDREHFLNEL 495 (803)
Q Consensus 468 iEIf~~~g~s~~l~F~~~~~r~~~~~~l 495 (803)
||||+.||+|+||+|.++++|++|++.|
T Consensus 78 lEiF~~dg~s~f~~F~~~~~R~~v~~~l 105 (106)
T PF14844_consen 78 LEIFFSDGRSYFFNFESKKERDEVYNKL 105 (106)
T ss_dssp EEEEETTS-EEEEE-SSHHHHHHHHCCS
T ss_pred EEEEEcCCcEEEEEcCCHHHHHHHHHhh
Confidence 9999999999999999999999998765
No 7
>cd01201 Neurobeachin Neurobeachin Pleckstrin homology-like domain. Neurobeachin Pleckstrin homology-like domain. This domain is found in the large multi-domain eukaryotic protein Nerubeachin, N-terminal to the BEACH domain. This PH-like domain interacts with the BEACH domain in the same manner used by other PH-like domains to bind peptides.
Probab=99.63 E-value=5.3e-16 Score=143.46 Aligned_cols=105 Identities=28% Similarity=0.380 Sum_probs=84.2
Q ss_pred CceeEEEeEEEeeccceeeeEEEeecceEEEeeCCCCcccccccccccccchhhhhccCCCCCCCCCCCccccccccccc
Q psy10776 307 ESVTYMCCTHLITPSKQIQGELLITSAGLKFIPFNESHNFVTNAVTEEFSEHEQVMSEGKNSEEPNETGAETKRIHNAID 386 (803)
Q Consensus 307 EkI~~s~~C~lVtpl~~~~G~LlIg~~~LyF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 386 (803)
|+|.+++.|.+|+|+.+.+|.|.||..++||.++...+.+ +.++
T Consensus 1 ~~ivls~~~~mVtPl~vvpG~l~ITt~~lyF~~d~~~~~~------------------------------------~~~~ 44 (108)
T cd01201 1 GPVLLSTPASLIAPGVVVKGTLSITTTEIFFEVDERDSQF------------------------------------KKID 44 (108)
T ss_pred CCeEEEeeeeEEEEEEEeccEEEEecCEEEEEECCccccc------------------------------------cccC
Confidence 5799999999999999999999999999999987622110 0000
Q ss_pred ccccccCCCchhhhHHhhhhhhhhhhhhhHHhhccccccccccCCCCCCCCeeeecCccccccccCeeeEecccccCccc
Q psy10776 387 EVDISNDVNSDQKIEVRENLSENAAQNTKVEKLNKKTTTKTKKNVSPDTEGIVYRTDDIISVQFTNIKEIHNRRYNLQEK 466 (803)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~w~~~~~~~I~~~~I~~I~~Rr~~l~~~ 466 (803)
+. ...+.+..++.|.+++ |++||+|||+|+.+
T Consensus 45 ~~----------------------------------------vl~~~~~~~~~w~ls~--------Ir~v~~RRylLr~~ 76 (108)
T cd01201 45 DE----------------------------------------VLSYCEELHGKWPFSE--------IRAIFSRRYLLQNT 76 (108)
T ss_pred cc----------------------------------------ceeccccccceeeHHH--------HHHHHHHhhhcccc
Confidence 00 0011245678899999 99999999999999
Q ss_pred EEEEEEeCCcEEEEEeCCcchHHHHHHHh
Q psy10776 467 AIELFLINGKNYLFAFENHNDREHFLNEL 495 (803)
Q Consensus 467 aiEIf~~~g~s~~l~F~~~~~r~~~~~~l 495 (803)
|||||+.||.++||+|.+++..++|+..+
T Consensus 77 alEiF~~d~~~~f~~F~~~~~~k~vv~~l 105 (108)
T cd01201 77 ALELFLASRTSIFFAFPDQNAVKKVVYAL 105 (108)
T ss_pred eEEEEEeCCceEEEEeCcHHHHHHHHhhc
Confidence 99999999999999999988887777654
No 8
>KOG1787|consensus
Probab=99.61 E-value=4.7e-17 Score=196.93 Aligned_cols=260 Identities=13% Similarity=-0.029 Sum_probs=218.8
Q ss_pred HHHhhhcCCCChHHHHHHHHhhcCCCCCCCCCCcccceeecCCCCCCCCCCCCccccCCCC-cccccCchhHHHHHHHHH
Q psy10776 512 TIQLWREGHLTNWAYLMILNKMAGRSYNDLMQYPVLPFILSDYKSATLDLTDPKSFRNLKK-PMAVQDKKNESHYVNNYN 590 (803)
Q Consensus 512 ~t~~W~~g~ISNFeYLm~LN~lAGRSfnDl~qYPVFPWVl~Dy~S~~lDL~~~~~fRDLsK-Piga~~~~r~~~~~~~y~ 590 (803)
...+|....++++.||+++|+++||++|+..+||.|||...++-+...|+..+..|||.++ |++++++.+.+.+...+
T Consensus 854 ~v~r~~~~~~~~~~~l~~~~~~vg~a~~~~~~~~~~~~~~~~v~~~~~~r~~~~~~~d~~vv~~~ar~~~~l~~~~~~~- 932 (1126)
T KOG1787|consen 854 FVARRLRDDISDQSYLVQLNLFVGRADNDIIQHPGFGDYSFRVYSTDSLRMRQSVFRDGDVVTCGARLEQYLAALQYPV- 932 (1126)
T ss_pred eehhhcccchhheeeeeecceEEEeccCccccccCccccccceEeeehhhhccccccccceeeeeeccccccccccccc-
Confidence 5579999999999999999999999999999999999999999999999999999999999 99999999887653322
Q ss_pred HHHHHhhhcCCCCCCCCcccCCCCCChhhHHhhhcccCCcchhhhhhcCCCCCCCCCcccCHHHHHhhhccCCcCccccc
Q psy10776 591 YLAREMCDAVGGVNQEPYHYGSHYSNSGTVLHFLVRIPPFTSMFLNYQDNNFDLPDRTFHNLATTWRLTSSESTTDVKEL 670 (803)
Q Consensus 591 ~l~~~~~~~~~~~~~~p~hygshYS~~~~Vl~yLvRlePFt~~~l~lQ~g~FD~~dR~F~SI~~~w~~~s~~s~~DvkEL 670 (803)
.+..+...+.+||| |||..|-+.+|.-+.+||+.+-..+++++||+.++++..+..+|+... .....++++
T Consensus 933 -------s~s~D~tI~~~~~s-~~~~~g~~~~~~s~~~e~~~lt~~~~~~~~~~~~~~~s~v~~~~~~~~-~~i~~~~gl 1003 (1126)
T KOG1787|consen 933 -------SSSEDGTIPLLYWS-HISSIGDIVVSGSAPEEFTTLTGQEASGKFSLVDAELSLVISGAKGGL-CLIHLVGGL 1003 (1126)
T ss_pred -------ccCCCcceeeeeec-cccccccccccccccCccchheecccceeeeecchhhhhhhhhccccc-ceeeeecch
Confidence 22235568889999 999999999999999999999999999999999999999999998543 446789999
Q ss_pred cccccccccccccCCCCCcccccCCCccCceecCCCCCChHHHHHHHHHHhhhhhhhcccchhhHhHhcccccchhHhhc
Q psy10776 671 IPELFYLADILVNNEGFDFGVRQNGQRVDSVILPPWAPDPRTFIMVHRQSLESELVSENLPHWIDLVFGYKQSGKAAVDA 750 (803)
Q Consensus 671 IPEFF~~PEfl~N~n~~~fG~~q~g~~v~DV~LP~Wa~sp~~FI~~hR~ALES~~VS~~Lh~WIDLIFGyKQ~G~~Av~a 750 (803)
.+.-.+.|++..+.....++...++..+..+..|.|+..+-. .+|.+.|.-..+.||+|++| +..|
T Consensus 1004 ~l~~~~~~~~~~~~~~~s~s~t~~~l~l~~~~~~v~~t~~~~-------~~~~~~I~v~~~~~~~l~~~-------~~~~ 1069 (1126)
T KOG1787|consen 1004 LLRLLEHPINLSILGLISLSETINCLELYEPGRFVNYTKNGK-------DDEQRHIEVGSEDEILLTGG-------WQMA 1069 (1126)
T ss_pred hhhcccCccceechhhhhhcccccchhhccccccceeccccc-------cccccceEeecccchhhcch-------hhhc
Confidence 999999999999999899999999999999999999954433 89999999999999999999 6777
Q ss_pred cCCCCCccccc-cccCCCCCHHHHHHHH--HHhHhcCCcccccccCCCC
Q psy10776 751 INVFHPATYYG-FDIAAIPDPLERTAWE--TMIRTYGQTPRQLFKSAHP 796 (803)
Q Consensus 751 ~NvF~p~tY~~-~d~~~i~D~~~r~a~e--~~i~~fGQ~P~QLF~~pHP 796 (803)
.+.+-...+.. ..+..+.+...+..+. .++.-.++++.+. ..-|+
T Consensus 1070 ~~~~~~i~~~~~~~i~~~s~~~sq~~~~~~~~~~~~~~~~~~f-n~~~~ 1117 (1126)
T KOG1787|consen 1070 NLEKLYIYFGNGAGIPAISLTFSQRLLFSGDRSDSISAFESDF-NRWHY 1117 (1126)
T ss_pred cccceEEEecCCCCccccccccchhhhhcCccccchhccchhh-ccccc
Confidence 77777555443 5667777776666552 2344555666654 34444
No 9
>KOG1788|consensus
Probab=99.29 E-value=8.2e-13 Score=154.18 Aligned_cols=178 Identities=21% Similarity=0.270 Sum_probs=118.5
Q ss_pred HHhhHHHHHHHHHHHHHHhhh------------hHHHHHHHHHHHHhcCCCCCCCCCCCC---CCccccCCCCCchHHHH
Q psy10776 191 HRQNAVQKTLLGEIKAIYNKQ------------LFTKDVWNRIILNLTHEKAPWYCEESY---PKSWQLDDVEGPERIRI 255 (803)
Q Consensus 191 ~~q~~~~k~~~~~~~~~~~~~------------~~a~~~W~~ii~qLThErg~W~~pes~---p~~WqLD~TEGP~R~R~ 255 (803)
+.|--||+--++-+|++...+ ..|...|....+||.||||++.-..+. ...|||.|-|||.|||+
T Consensus 2444 w~q~nerryalev~rdams~elrvvrqnkyg~ilhaes~w~thlqqlvhergifpmr~s~g~ed~~wqlcpiegpyrmrk 2523 (2799)
T KOG1788|consen 2444 WEQVNERRYALEVVRDAMSAELRVVRQNKYGLILHAESVWPTHLQQLVHERGIFPMRISHGVEDLKWQLCPIEGPYRMRK 2523 (2799)
T ss_pred HHHHhHHHHHHHHHHHHhhhhheeeecccceEEEeecccchHHHHHHHHhcCCcceecccCcCCcceeecCCcCcHHHHH
Confidence 445566666666666665554 357788999999999999999865443 47999999999999999
Q ss_pred HHhhccccCcc-------c---------------------------ccChhhhc-----ccc-----------------c
Q psy10776 256 RQKRCHLYVHE-------K---------------------------YLKPEYRA-----KTA-----------------A 279 (803)
Q Consensus 256 RLrR~~~~i~~-------r---------------------------~l~pe~~~-----~~~-----------------~ 279 (803)
+|.||.+.||. + |+..|... +.+ +
T Consensus 2524 klercklkids~~n~l~gklelgeiel~k~k~edg~visd~dsep~fllsely~esf~~e~dd~kdv~sarngwn~dra~ 2603 (2799)
T KOG1788|consen 2524 KLERCKLKIDSLHNLLEGKLELGEIELLKSKSEDGLVISDMDSEPAFLLSELYSESFSEEADDLKDVPSARNGWNNDRAT 2603 (2799)
T ss_pred HHHhhhhhhHHHHHHhhcceecceeecccccCCCCceeecCCCCchHHHHHHHHhhhhhhccchhcchhhhcCCcccccc
Confidence 99999998854 1 11111100 000 0
Q ss_pred ----cCcCCccccccc-----------------------------Cc-------------cc-ccchhhhcCCCCceeEE
Q psy10776 280 ----YKKEQPLEYLVK-----------------------------DS-------------IK-HESMIETIHTSESVTYM 312 (803)
Q Consensus 280 ----~~~~~pl~~l~~-----------------------------~~-------------~~-~~s~l~~l~~~EkI~~s 312 (803)
.+.-+.|+|-=+ |. ++ .+.+-..++.-|+|++.
T Consensus 2604 stn~aslh~~l~fggkss~~svpi~~~t~~ksetgsp~~sss~kmde~~~~ee~sekel~ddgeylirpylehlekirfr 2683 (2799)
T KOG1788|consen 2604 STNAASLHNSLSFGGKSSAVSVPISVNTDEKSETGSPIKSSSGKMDEIKHVEEESEKELKDDGEYLIRPYLEHLEKIRFR 2683 (2799)
T ss_pred ccchhhhhhhcccCCccceeEeeeeccccccccCCCCcccccccccccccchhhhhhhhccCcceehhHHHHHHHHhhhh
Confidence 000000000000 00 00 01223344555799999
Q ss_pred EeEEEeeccceeeeEEEeecceEEEeeCCCCcccccccccccccchhhhhccCCCCCCCCCCCccccccccccccc
Q psy10776 313 CCTHLITPSKQIQGELLITSAGLKFIPFNESHNFVTNAVTEEFSEHEQVMSEGKNSEEPNETGAETKRIHNAIDEV 388 (803)
Q Consensus 313 ~~C~lVtpl~~~~G~LlIg~~~LyF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 388 (803)
++|.+|.++++++|+++||+-+||.++||++|. +|+++|. |..|+.+.|.++.|..
T Consensus 2684 yncervv~ldkhdgiflige~clyvienfyid~------------------~gcicek--ecedels~idqa~g~k 2739 (2799)
T KOG1788|consen 2684 YNCERVVGLDKHDGIFLIGELCLYVIENFYIDD------------------HGCICEK--ECEDELSIIDQAQGLK 2739 (2799)
T ss_pred ccceeeecccccCceEeehhhHHHhhhheeEcC------------------CCccchh--hhhhhhhHHHHhhhhh
Confidence 999999999999999999999999999997654 4666654 4556777777777743
No 10
>PF06469 DUF1088: Domain of Unknown Function (DUF1088); InterPro: IPR010508 This domain is found in the neurobeachins. The function of this region is not known.
Probab=98.34 E-value=2.6e-06 Score=84.72 Aligned_cols=77 Identities=18% Similarity=0.221 Sum_probs=56.3
Q ss_pred HHHHHHHhhHHHH--HHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCCCCCCCC--CCCCccccCCCCCchHHHHHHhhcc
Q psy10776 186 TQQCLHRQNAVQK--TLLGEIKAIYNKQLFTKDVWNRIILNLTHEKAPWYCEE--SYPKSWQLDDVEGPERIRIRQKRCH 261 (803)
Q Consensus 186 t~~~~~~q~~~~k--~~~~~~~~~~~~~~~a~~~W~~ii~qLThErg~W~~pe--s~p~~WqLD~TEGP~R~R~RLrR~~ 261 (803)
.+.+.+...++|- -+|..-|.- ....+.+.|.+|...||+++|+|+.+. ....+|+||.+|+..|||+||.||+
T Consensus 43 aq~~~~~~eEe~~cdhli~AarrR--D~~~a~~L~~Ki~~iLtn~~GaWg~~~~~~~~~fWkLD~WEDD~RRRrR~V~NP 120 (169)
T PF06469_consen 43 AQTSADRREEERMCDHLIRAARRR--DHVTASRLLRKILNILTNKHGAWGDSSSSRPSEFWKLDYWEDDSRRRRRFVPNP 120 (169)
T ss_pred HHHHHhhHHHHHHhHHHHHHHHHH--hHHHHHHHHHHHHHHHcCCCCCCCCccccCccceeeccccccchHHHHhcCCCC
Confidence 3445555555542 222222222 445677889999999999999999743 3358999999999999999999999
Q ss_pred ccC
Q psy10776 262 LYV 264 (803)
Q Consensus 262 ~~i 264 (803)
.+.
T Consensus 121 ~GS 123 (169)
T PF06469_consen 121 YGS 123 (169)
T ss_pred CCC
Confidence 776
No 11
>PF14470 bPH_3: Bacterial PH domain
Probab=88.03 E-value=6.6 Score=34.85 Aligned_cols=39 Identities=18% Similarity=0.258 Sum_probs=34.9
Q ss_pred cCCCCceeEEEeEEEeeccceeeeEEEeecceEEEeeCC
Q psy10776 303 IHTSESVTYMCCTHLITPSKQIQGELLITSAGLKFIPFN 341 (803)
Q Consensus 303 l~~~EkI~~s~~C~lVtpl~~~~G~LlIg~~~LyF~~~~ 341 (803)
|.++|+|.+.+.|.+........|.+.+|+..|+|+...
T Consensus 1 L~~~E~I~~~~~~~~~~~~~~~~g~l~~TnkRlif~~~~ 39 (96)
T PF14470_consen 1 LKEDEEIEYVAVGSYNYFFTSFPGVLVLTNKRLIFYSKG 39 (96)
T ss_pred CcCCCEEEEEEEEEEeecccCceeEEEEeCCEEEEEEcc
Confidence 568999999999998888889999999999999997553
No 12
>smart00568 GRAM domain in glucosyltransferases, myotubularins and other putative membrane-associated proteins.
Probab=86.26 E-value=1.4 Score=36.57 Aligned_cols=38 Identities=21% Similarity=0.156 Sum_probs=34.0
Q ss_pred cCCCCceeEEEeEEEeeccceeeeEEEeecceEEEeeCC
Q psy10776 303 IHTSESVTYMCCTHLITPSKQIQGELLITSAGLKFIPFN 341 (803)
Q Consensus 303 l~~~EkI~~s~~C~lVtpl~~~~G~LlIg~~~LyF~~~~ 341 (803)
|.++|++...+.|.+. ......|.|.||+.+|+|..+.
T Consensus 2 l~~~E~l~~~~~C~l~-~~~~~~G~lyiT~~~l~F~S~~ 39 (61)
T smart00568 2 LPEEEKLIADYSCYLS-RDGPVQGRLYISNYRLCFRSDL 39 (61)
T ss_pred cCCCcEEEEEEEeEEC-CCccccEEEEEECCEEEEEccC
Confidence 5688999999999999 6678999999999999998765
No 13
>PF02893 GRAM: GRAM domain; InterPro: IPR004182 The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins. It is normally about 70 amino acids in length. It is thought to be an intracellular protein-binding or lipid-binding signalling domain, which has an important function in membrane-associated processes. Mutations in the GRAM domain of myotubularins cause a muscle disease, which suggests that the domain is essential for the full function of the enzyme []. Myotubularin-related proteins are a large subfamily of protein tyrosine phosphatases (PTPs) that dephosphorylate D3-phosphorylated inositol lipids [].; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A.
Probab=85.11 E-value=0.89 Score=38.67 Aligned_cols=39 Identities=23% Similarity=0.248 Sum_probs=30.2
Q ss_pred cCCCCceeEEEeEEEeeccceeeeEEEeecceEEEeeCC
Q psy10776 303 IHTSESVTYMCCTHLITPSKQIQGELLITSAGLKFIPFN 341 (803)
Q Consensus 303 l~~~EkI~~s~~C~lVtpl~~~~G~LlIg~~~LyF~~~~ 341 (803)
|..+|.+...+.|.+..+.....|.|.||+.+|.|..+.
T Consensus 9 lp~~E~li~~~~c~l~~~~~~~~G~LyiT~~~lcF~s~~ 47 (69)
T PF02893_consen 9 LPEEERLIEEYSCALFKSKIPVQGRLYITNNYLCFYSNK 47 (69)
T ss_dssp --TT--EEEEEEETTTEE---EEEEEEEESSEEEEEESS
T ss_pred CCCCCeEEEEEEEEEECCccceeeEEEECCCEEEEEECC
Confidence 678999999999999999999999999999999998865
No 14
>cd01257 PH_IRS Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. PH domains are only found in eukaryotes, and are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes. The IRS PH domain targets IRS molecules to the plasma membrane, usually in response to insulin stimulation.
Probab=42.41 E-value=60 Score=30.37 Aligned_cols=49 Identities=16% Similarity=0.294 Sum_probs=37.1
Q ss_pred cccccCeeeEecccccCcccEEEEEEeCCcEEEEEeCCcchHHHHHHHhh
Q psy10776 447 SVQFTNIKEIHNRRYNLQEKAIELFLINGKNYLFAFENHNDREHFLNELS 496 (803)
Q Consensus 447 ~I~~~~I~~I~~Rr~~l~~~aiEIf~~~g~s~~l~F~~~~~r~~~~~~l~ 496 (803)
.|.++++..|.++.=..+..+++|.+.+ ++|+|..+++.+++.=+..|.
T Consensus 51 vI~L~~c~~v~~~~d~k~~~~f~i~t~d-r~f~l~aese~E~~~Wi~~i~ 99 (101)
T cd01257 51 VIPLESCFNINKRADAKHRHLIALYTRD-EYFAVAAENEAEQDSWYQALL 99 (101)
T ss_pred EEEccceEEEeeccccccCeEEEEEeCC-ceEEEEeCCHHHHHHHHHHHh
Confidence 4556667777654333346899999977 699999999999988777764
No 15
>cd01264 PH_melted Melted pleckstrin homology (PH) domain. Melted pleckstrin homology (PH) domain. The melted protein has a C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=36.88 E-value=65 Score=30.31 Aligned_cols=49 Identities=27% Similarity=0.529 Sum_probs=34.9
Q ss_pred cccccCeeeEec----ccccCcccEEEEEEeCCcEEEEEeCCcchHHHHHHHhh
Q psy10776 447 SVQFTNIKEIHN----RRYNLQEKAIELFLINGKNYLFAFENHNDREHFLNELS 496 (803)
Q Consensus 447 ~I~~~~I~~I~~----Rr~~l~~~aiEIf~~~g~s~~l~F~~~~~r~~~~~~l~ 496 (803)
.|+++++..|-. ++-.-.++++||++.+ ++|+|..+++++++.=++.|.
T Consensus 46 ~IdL~~~~sVk~~~~~~~~~~~~~~Fei~tp~-rt~~l~A~se~e~e~WI~~i~ 98 (101)
T cd01264 46 SIDLSKIRSVKAVAKKRRDRSLPKAFEIFTAD-KTYILKAKDEKNAEEWLQCLN 98 (101)
T ss_pred eEEcccceEEeeccccccccccCcEEEEEcCC-ceEEEEeCCHHHHHHHHHHHH
Confidence 345555665543 1112347899998876 999999999999988887765
No 16
>PF03941 INCENP_ARK-bind: Inner centromere protein, ARK binding region; InterPro: IPR005635 This region of the inner centromere protein has been found to be necessary and sufficient for binding to aurora-related kinase. This interaction has been implicated in the coordination of chromosome segregation with cell division in yeast [].; PDB: 2BFX_C 2BFY_C 3ZTX_D 2VGO_D 2VGP_D 2VRX_D 4AF3_D.
Probab=29.85 E-value=23 Score=29.72 Aligned_cols=30 Identities=33% Similarity=0.530 Sum_probs=18.3
Q ss_pred eecCCCCCChHHHHHHHHHHhhhhhhhcccchhhHhHhcc
Q psy10776 701 VILPPWAPDPRTFIMVHRQSLESELVSENLPHWIDLVFGY 740 (803)
Q Consensus 701 V~LP~Wa~sp~~FI~~hR~ALES~~VS~~Lh~WIDLIFGy 740 (803)
-.+|.||.+|.. |+||...+.- =.|-|||-
T Consensus 16 k~iP~WA~~~~L-----~~~L~~Q~~~-----Dpd~IFG~ 45 (57)
T PF03941_consen 16 KPIPSWAQSPNL-----RQALKKQQNI-----DPDEIFGP 45 (57)
T ss_dssp ----GGGSHHHH-----HHHHHHHHHS------HHHHCTT
T ss_pred CCCCCCcCcHHH-----HHHHHHHhcc-----CHHHHcCC
Confidence 479999999875 6677665432 37889994
No 17
>PF06713 bPH_4: Bacterial PH domain; InterPro: IPR009589 This entry is represented by Bacteriophage SP-beta, YolF. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical proteins specific to Oceanobacillus and Bacillus species. Members of this family are typically around 130 residues in length. The function of this family is unknown.
Probab=25.11 E-value=1.4e+02 Score=26.25 Aligned_cols=48 Identities=23% Similarity=0.418 Sum_probs=33.2
Q ss_pred ccccCeeeEeccc-----ccCcccEEEEEEeCCcEEEEEeCCcchHHHHHHHhhhC
Q psy10776 448 VQFTNIKEIHNRR-----YNLQEKAIELFLINGKNYLFAFENHNDREHFLNELSTC 498 (803)
Q Consensus 448 I~~~~I~~I~~Rr-----~~l~~~aiEIf~~~g~s~~l~F~~~~~r~~~~~~l~~~ 498 (803)
|++.+|+.|.+.+ ..+--.+|||....+..+++. + ++++.|++.|.+.
T Consensus 21 I~i~~I~~I~~~~~~~~~~a~S~~rl~I~y~~~~~i~Is-P--~~~~~FI~~L~k~ 73 (74)
T PF06713_consen 21 IPIEDIRSIRPTKNPLSSPALSLDRLEIYYGKYKSILIS-P--KDKEEFIAELQKR 73 (74)
T ss_pred EEhHHccEEEecCCccccccccccEEEEEECCCCEEEEE-C--CCHHHHHHHHHhh
Confidence 5555588887763 344457899999977785443 3 4668999988653
No 18
>cd01245 PH_RasGAP_CG5898 RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. This protein has a domain architecture of SH2-SH3-SH2-PH-C2-Ras_GAP. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=21.42 E-value=1.7e+02 Score=27.35 Aligned_cols=35 Identities=9% Similarity=0.152 Sum_probs=29.4
Q ss_pred cCcccEEEEEEeCC-cEEEEEeCCcchHHHHHHHhhh
Q psy10776 462 NLQEKAIELFLING-KNYLFAFENHNDREHFLNELST 497 (803)
Q Consensus 462 ~l~~~aiEIf~~~g-~s~~l~F~~~~~r~~~~~~l~~ 497 (803)
+.+++++||+..++ ..||+...+ ++|++=++.|.+
T Consensus 62 ~~r~~cFel~~~~~~~~y~~~a~~-~er~~Wi~~l~~ 97 (98)
T cd01245 62 FGRPNCFQIVERALPTVYYSCRSS-EERDKWIESLQA 97 (98)
T ss_pred cCCCeEEEEecCCCCeEEEEeCCH-HHHHHHHHHHhc
Confidence 45789999999887 789999998 899988887753
No 19
>PF06115 DUF956: Domain of unknown function (DUF956); InterPro: IPR010360 This is a family of bacterial sequences with undetermined function.
Probab=21.07 E-value=7.9e+02 Score=24.11 Aligned_cols=33 Identities=12% Similarity=0.134 Sum_probs=26.8
Q ss_pred CCCceeEEEeEEEeeccceeeeEEEeecceEEEe
Q psy10776 305 TSESVTYMCCTHLITPSKQIQGELLITSAGLKFI 338 (803)
Q Consensus 305 ~~EkI~~s~~C~lVtpl~~~~G~LlIg~~~LyF~ 338 (803)
.+.+|-+...+..-.++. .-|.++||+..+=|.
T Consensus 5 lNtkvdl~~~ats~~g~~-~yGkimiGDkaFEFy 37 (118)
T PF06115_consen 5 LNTKVDLTTKATSYLGLG-KYGKIMIGDKAFEFY 37 (118)
T ss_pred cccEEEEEEeeEEEeccc-ccCeEEEcccceEee
Confidence 456788888888888877 889999999998663
Done!