RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10776
(803 letters)
>1t77_A Lipopolysaccharide-responsive and beige-like anchor protein,
CDC4-like protein; PH-beach domains, vesicle
trafficking, signal transduction; 2.40A {Homo sapiens}
SCOP: a.169.1.1 b.55.1.6 PDB: 1mi1_A
Length = 414
Score = 371 bits (954), Expect = e-121
Identities = 146/365 (40%), Positives = 204/365 (55%), Gaps = 24/365 (6%)
Query: 447 SVQFTNIKEIHNRRYNLQEKAIELFLINGKNYLFAFENHNDREHFLNELSTCNLPNRMSS 506
FT I+ I +RRY LQ A+E+F+ N +F F + + +N L +
Sbjct: 57 KWLFTEIRSIFSRRYLLQNTALEIFMANRVAVMFNFPDPATVKKVVNFLPRVGVGTSFGL 116
Query: 507 DL--------------LSDTIQLWREGHLTNWAYLMILNKMAGRSYNDLMQYPVLPFILS 552
S+ Q W+ ++N+ YLM LN +AGRSYNDL QYPV P++++
Sbjct: 117 PQTRRISLASPRQLFKASNMTQRWQHREISNFEYLMFLNTIAGRSYNDLNQYPVFPWVIT 176
Query: 553 DYKSATLDLTDPKSFRNLKKPMAVQDKKNESHYVNNYNYLAREMCDAVGGVNQEPYHYGS 612
+Y+S LDLT P +FR+L KP+ + K + + Y +HYG+
Sbjct: 177 NYESEELDLTLPTNFRDLSKPIGALNPKRAAFFAERYESWE--------DDQVPKFHYGT 228
Query: 613 HYSNSGTVLHFLVRIPPFTSMFLNYQDNNFDLPDRTFHNLATTWRLTSSESTTDVKELIP 672
HYS + VL +L+RI PFT+ FLN Q FD DRTF +++ WR S T+D+KELIP
Sbjct: 229 HYSTASFVLAWLLRIEPFTTYFLNLQGGKFDHADRTFSSISRAWR-NSQRDTSDIKELIP 287
Query: 673 ELFYLADILVNNEGFDFGVRQNGQRVDSVILPPWAPDPRTFIMVHRQSLESELVSENLPH 732
E +YL ++ VN ++ GV +G V V LPPWA F+ ++R +LESE VS L
Sbjct: 288 EFYYLPEMFVNFNNYNLGVMDDGTVVSDVELPPWAKTSEEFVHINRLALESEFVSCQLHQ 347
Query: 733 WIDLVFGYKQSGKAAVDAINVFHPATYYG-FDIAAIPDPLERTAWETMIRTYGQTPRQLF 791
WIDL+FGYKQ G AV A+NVF+ TY G ++ +I DP+ R A E IR++GQTP QL
Sbjct: 348 WIDLIFGYKQQGPEAVRALNVFYYLTYEGAVNLNSITDPVLREAVEAQIRSFGQTPSQLL 407
Query: 792 KSAHP 796
HP
Sbjct: 408 IEPHP 412
Score = 30.5 bits (68), Expect = 2.1
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 317 LITPSKQIQGELLITSAGLKFIPFNESHNF 346
L+ PS ++G L +TS+ L F E NF
Sbjct: 11 LVAPSVVVKGTLSVTSSELYFEVDEEDPNF 40
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 60.3 bits (145), Expect = 2e-09
Identities = 79/593 (13%), Positives = 175/593 (29%), Gaps = 126/593 (21%)
Query: 39 IRHTLRTKT----SQLIIWILEPNRSTNLRIFLINTLR-NEIYLKEILTNLFVNNNLEIK 93
I H + +K + + W L + ++ F+ LR N +L + +
Sbjct: 51 IDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKT--EQRQPSMM 108
Query: 94 FILFLWELIYCCKLNNDDLRVCYEFEAKLKSIINHDIGNSNSKLNREVYIA------C-K 146
+++ + +L ND+ ++L+ + + +L + K
Sbjct: 109 TRMYIEQR---DRLYNDNQVFAKYNVSRLQPY--LKLRQALLELRPAKNVLIDGVLGSGK 163
Query: 147 EFKAAQNEWVLAQMTHINKMILTRYEQLVRQITDTCIASTQQCLHRQNAVQKTLLGEIKA 206
+A ++ + + + + + S + L LL +I
Sbjct: 164 --------TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ----KLLYQIDP 211
Query: 207 IYNKQLFTKDVWNRIILN---LTHEKAPWYCEESYPKSWQ-LDDVEGPERIRIRQKRCHL 262
+ + D + I L + E + Y L +V+ + C +
Sbjct: 212 NWTSRS---DHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKI 268
Query: 263 YVHEKYLKPEYRAKTAAYKKEQPLEYLVKDSIKHESMIE---TIHTSESVTYMC-CTHLI 318
+ T +K Q ++L + H S+ T+ E + +
Sbjct: 269 LL------------TTRFK--QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR 314
Query: 319 T---PSKQIQGE-LLITSAGLKFIPFNESHNFVTNAVTEEFSEHEQVMSEGKNSEEPNET 374
P + + ++ + + + ++ + ++ N EP E
Sbjct: 315 PQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTT---IIESSLNVLEPAEY 371
Query: 375 GAETKRIHNAI--DEVDISNDVNSDQKIEVR-ENLSENAAQNTKVEKLNKKTTTKTKKNV 431
R+ ++ I + + + ++ ++ V KL+K + +K
Sbjct: 372 RKMFDRL--SVFPPSAHIPTIL-----LSLIWFDVIKSDVMVV-VNKLHKYSL--VEKQP 421
Query: 432 SPDTEGIVYRTDDI---ISVQFTNIKEIHNR---RYNLQEKAI--ELFLINGKNYLFAFE 483
T I + V+ N +H YN+ + +L Y ++
Sbjct: 422 KEST----ISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHI 477
Query: 484 NHNDREHFLNELSTCNLPNRMSSDLLSDTIQLWREGHLT-NWAYLMILNKMAGRSYNDLM 542
H H L P RM+ L+R L + + K+ S
Sbjct: 478 GH----H----LKNIEHPERMT---------LFRMVFLDFRF----LEQKIRHDSTAWNA 516
Query: 543 QYPVLPFILSDYKSATLDLTDPKSFRNLKKPMAVQDKKNESHYVNNY-NYLAR 594
+L L + K + D K E VN ++L +
Sbjct: 517 SGSILN-----------TLQQ---LKFYKPYICDNDPKYER-LVNAILDFLPK 554
Score = 41.0 bits (95), Expect = 0.002
Identities = 47/371 (12%), Positives = 102/371 (27%), Gaps = 97/371 (26%)
Query: 7 NFICHMLV-TMLLSINSVIEKKNNTNYSSIMWNIRHT-----------LRTKTSQL---- 50
N C +L+ T + + T+ S ++ T L + L
Sbjct: 263 NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREV 322
Query: 51 ---------IIWIL---EPNRSTNLRIFLINTLRNEI----------YLKEILTNLFV-- 86
II N + + L I +++ L V
Sbjct: 323 LTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP 382
Query: 87 -NNNLEIKFILFLWELIYCCKLNNDDLRVCYEFEAKL--KSIINHDIGNSNSKLNREVYI 143
+ ++ + +W + KL S++ S + +Y+
Sbjct: 383 PSAHIPTILLSLIW--------FDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP-SIYL 433
Query: 144 ACKEFKAAQNEWVLAQMTHINKMILTRYEQLVRQITDTCIASTQ-----QCL--HRQNAV 196
E K + H + I+ Y +D I + H +N
Sbjct: 434 ---ELKVKLEN--EYAL-H--RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIE 485
Query: 197 QKTLLGEIKAIYNKQLFTKDVWNRIILNLTHEKAPWYCEESYPKSWQLDDVEGPERIRIR 256
+ + ++ F + +I H+ W S L+ + +++
Sbjct: 486 HPERMTLFRMVFLDFRFLE---QKIR----HDSTAWNASGSI-----LNTL-----QQLK 528
Query: 257 QKRCHLYVHEKYLKPEYRAKTAAYKK--EQPLEYLVKDSIKHESMIETIHTSESVTYMCC 314
+ ++ ++ P+Y A + E L+ K+ ++ +E
Sbjct: 529 FYKPYICDND----PKYERLVNAILDFLPKIEENLICS--KYTDLLRIALMAEDEAI--- 579
Query: 315 THLITPSKQIQ 325
KQ+Q
Sbjct: 580 --FEEAHKQVQ 588
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 47.4 bits (112), Expect = 2e-05
Identities = 49/307 (15%), Positives = 82/307 (26%), Gaps = 109/307 (35%)
Query: 548 PFILS-------------DYKSATLDLTDPKSF-RNLKKPMA--VQDKKNES--HYVNNY 589
P LS + A+ L + F + L +P D + + V +
Sbjct: 8 PLTLSHGSLEHVLLVPTASFFIAS-QLQE--QFNKILPEPTEGFAADDEPTTPAELVGKF 64
Query: 590 -NYLAREMCDAVGGVNQEPYHYGSHYSNSGTVLHFLVRIPPFTSMFLNYQDNNFDLPDRT 648
Y++ + EP G VL+ + F + +L + N+
Sbjct: 65 LGYVSSLV---------EPSKVGQF----DQVLNLCLTE--FENCYL--EGNDI------ 101
Query: 649 FHNLATTWRLTSSESTT--DVKELIPELFYLADILVNNEG--------FD---------- 688
H LA L TT KELI + + A I+ F
Sbjct: 102 -HALAAK--LLQENDTTLVKTKELI-KNYITARIMAKRPFDKKSNSALFRAVGEGNAQLV 157
Query: 689 --FGVRQNGQRVDSVILPPW----------APDPRTFIMVHRQSLESELVSEN------L 730
FG GQ + I ++L EL+
Sbjct: 158 AIFG----GQ---GNTDDYFEELRDLYQTYHVLVGDLIKFSAETLS-ELIRTTLDAEKVF 209
Query: 731 PHWIDLVFGYKQSGKAAVDAINVFHPATYYGFDIAAIPDPL----ERTAWETMIRTYGQT 786
++++ + P Y I PL + + + G T
Sbjct: 210 TQGLNILEWLENPSNT---------PDKDY-LLSIPISCPLIGVIQLAHYVVTAKLLGFT 259
Query: 787 PRQLFKS 793
P +L
Sbjct: 260 PGELRSY 266
Score = 46.2 bits (109), Expect = 5e-05
Identities = 39/276 (14%), Positives = 80/276 (28%), Gaps = 67/276 (24%)
Query: 205 KAIYNKQLFTKDVWNRIILNLTHEKAPWYCEESYPKSWQLDDV--EGPERIRIR---QKR 259
+Y +DVWNR A + +++Y + + D+ P + I +K
Sbjct: 1633 MDLYKTSKAAQDVWNR---------ADNHFKDTY--GFSILDIVINNPVNLTIHFGGEKG 1681
Query: 260 CHLYVHEKYLKPEYRAKTAAYKKEQPL-----EYLVKDSIKH--ESMIETIHTS---ESV 309
+ E Y + K + + E+ + + + T T +
Sbjct: 1682 KRIR--ENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLM 1739
Query: 310 TYMCCTHL----ITPSKQIQ-----GEL--LITSAGLKFIPFNESHNFVT---NAVTEEF 355
L + P+ GE L + A + V +
Sbjct: 1740 EKAAFEDLKSKGLIPADATFAGHSLGEYAALASLAD--VMSIESLVEVVFYRGMTMQVAV 1797
Query: 356 SEHEQVMSEGK----NSEEPNETGAE------TKRIHNAIDE-VDISNDVNSD--QKI-- 400
E S N + ++ +R+ V+I N N + Q +
Sbjct: 1798 PRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNY-NVENQQYVAA 1856
Query: 401 -EVR------ENLSENAAQNTKVEKLNKKTTTKTKK 429
++R L+ Q + +L K + + +
Sbjct: 1857 GDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVE 1892
Score = 38.9 bits (90), Expect = 0.008
Identities = 95/617 (15%), Positives = 171/617 (27%), Gaps = 233/617 (37%)
Query: 262 LYVHEKYLKPEYRAKTAAYKKEQPLEYLVKDSIKHESMIETIHTSESVT-YMC-CTHLIT 319
+ L+ ++ +P E D E +E V ++ + L+
Sbjct: 26 SFFIASQLQEQFNKIL-----PEPTEGFAADD-------EPTTPAELVGKFLGYVSSLVE 73
Query: 320 PSKQIQ-GELLITSAGLK-----FIPFNESHNFVTNAVTEEFSEHEQVMSEGKN------ 367
PSK Q ++L + L ++ N+ H + E + + KN
Sbjct: 74 PSKVGQFDQVL--NLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARI 131
Query: 368 -SEEPNETGAETK----------RIHNAI-----------DEV----DISNDVNSDQKIE 401
++ P + + + ++ AI +E+ + + D
Sbjct: 132 MAKRPFDKKSNSALFRAVGEGNAQLV-AIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKF 190
Query: 402 VRENLSENAAQNTKVEK-----------LNKKTTTKTKKNVSPDTEGIVYRTDDIIS--- 447
E LSE EK L + T PD + Y IS
Sbjct: 191 SAETLSELIRTTLDAEKVFTQGLNILEWLENPSNT-------PDKD---YLLSIPISCPL 240
Query: 448 ---VQFTNIKEIHNRRYNLQEKAIELFLINGKNYLFAFENHNDREHFLNELSTCNLPNRM 504
+Q + +++ K F L +
Sbjct: 241 IGVIQLAH------------------YVVTAKLLGFTPGELRSY---LKGATGH------ 273
Query: 505 SSDLL-------SDTIQLWREGHLTNWAYLMILNKMAGRSYNDLMQYPVL---PFILSDY 554
S L+ +D+ W ++ + +L + R Y YP P IL D
Sbjct: 274 SQGLVTAVAIAETDS---WESFFVSVRKAITVLFFIGVRCYE---AYPNTSLPPSILED- 326
Query: 555 KSATLDLTDPK---SFRNLKKPMAVQ---DKKN-----ESH-YVNNYN------------ 590
S + P S NL + VQ +K N ++ N
Sbjct: 327 -SLENNEGVPSPMLSISNLTQE-QVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQ 384
Query: 591 YLA------REMCDAVGGVNQ--------------------EPYHYGSHYSNSGT--VLH 622
L R+ A G++Q P+H SH + +
Sbjct: 385 SLYGLNLTLRKAK-APSGLDQSRIPFSERKLKFSNRFLPVASPFH--SHLLVPASDLINK 441
Query: 623 FLV-----------RIPPF-TSMFLNYQDNNFDLPDRTFHNLATT---WRLTSSESTTDV 667
LV +IP + T + + + + +R + W T+ T +
Sbjct: 442 DLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHI 501
Query: 668 KELIP-ELFYLADILVNN-EGFDFGVRQNGQRVDSVILPPWAPDPRTFIMVHRQSLESEL 725
+ P L + N +G GVR VI+ +L+
Sbjct: 502 LDFGPGGASGLGVLTHRNKDGT--GVR--------VIVA--------------GTLDINP 537
Query: 726 VSENLPHWIDLVFGYKQ 742
+ +G+KQ
Sbjct: 538 DDD---------YGFKQ 545
Score = 35.4 bits (81), Expect = 0.10
Identities = 71/460 (15%), Positives = 127/460 (27%), Gaps = 195/460 (42%)
Query: 5 ETNFIC----HMLVTMLLSIN-SVIEKKNN--TNY-SSIMWNIRHTLRTKTSQLIIWILE 56
E ++ H L LL N + + K NY ++ + R + S L
Sbjct: 92 ENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSAL----FR 147
Query: 57 PNRSTNLRIFLI-----NT------LRNEIY-------------LKEILTNLFVNNNLEI 92
N ++ I NT LR ++Y E L+ L + L+
Sbjct: 148 AVGEGNAQLVAIFGGQGNTDDYFEELR-DLYQTYHVLVGDLIKFSAETLSEL-IRTTLDA 205
Query: 93 KFI------LFLWELIYCCKLNNDDLR---------------------VCY--------- 116
+ + + W L N Y
Sbjct: 206 EKVFTQGLNILEW-------LENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGF 258
Query: 117 ---EFEAKLKSIINHD--------IGNSNS-----KLNREV-----YIACKEFKAAQNEW 155
E + LK H I ++S R+ +I + ++A N
Sbjct: 259 TPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTS 318
Query: 156 VLAQMTHINK---------MI----LTRYEQLVRQITDTC----------IASTQQCLH- 191
+ + + M+ LT+ EQ+ + T I+ L
Sbjct: 319 LPPSILEDSLENNEGVPSPMLSISNLTQ-EQVQDYVNKTNSHLPAGKQVEIS-----LVN 372
Query: 192 -RQNAVQKTLLGEIKAIYNKQLFTKDVWNRIILNLTHEKAPWYCEESYPKSWQLDDVEGP 250
+N V + G +++Y + L L KAP ++S
Sbjct: 373 GAKNLV---VSGPPQSLY-----------GLNLTLRKAKAPSGLDQS------------- 405
Query: 251 ERIRIRQKRCHLYV---------HEKYLKP-------EYRAKTAAYKKEQ---PLEYLVK 291
RI +++ H L P + ++ + P+ Y
Sbjct: 406 -RIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPV-YDTF 463
Query: 292 D---------SIKHESMIETIHTS----ESVTYMCCTHLI 318
D SI E +++ I E+ T TH++
Sbjct: 464 DGSDLRVLSGSIS-ERIVDCIIRLPVKWETTTQFKATHIL 502
Score = 32.3 bits (73), Expect = 0.78
Identities = 17/66 (25%), Positives = 26/66 (39%), Gaps = 16/66 (24%)
Query: 735 DLVFGYKQSGKAAVDAINVF-----HPATYYGFDIAAI--PDPLERTAWETMIRTYGQTP 787
DL YK S A +V+ H YGF I I +P+ T + G+
Sbjct: 1634 DL---YKTSKAAQ----DVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEK--GKRI 1684
Query: 788 RQLFKS 793
R+ + +
Sbjct: 1685 RENYSA 1690
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.7 bits (68), Expect = 0.93
Identities = 7/33 (21%), Positives = 16/33 (48%), Gaps = 6/33 (18%)
Query: 692 RQNGQRVDSVILPPWAPD--PRTFIMVHRQSLE 722
+Q +++ + L +A D P I + ++E
Sbjct: 19 KQALKKLQAS-LKLYADDSAPALAI---KATME 47
>2i5v_O Outer surface protein A; beta-sheet, de novo protein; HET: PG4;
1.10A {Borrelia burgdorferi} PDB: 2g8c_O* 2pi3_O 2oyb_O
2i5z_O* 2ol6_O 2oy5_O 3aum_O 2ol7_A 1osp_O 1fj1_E 3ckg_A
2ol8_O 2oy1_O 3ckf_A
Length = 251
Score = 30.9 bits (69), Expect = 1.4
Identities = 16/62 (25%), Positives = 33/62 (53%)
Query: 388 VDISNDVNSDQKIEVRENLSENAAQNTKVEKLNKKTTTKTKKNVSPDTEGIVYRTDDIIS 447
V +S +++ ++ V N ++++A K N T+T T S T+ +V+ + + I+
Sbjct: 163 VTLSKNISKSGEVSVELNDTDSSAATKKTAAWNSGTSTLTITVNSKKTKDLVFTSSNTIT 222
Query: 448 VQ 449
VQ
Sbjct: 223 VQ 224
>2oq0_A Gamma-interferon-inducible protein IFI-16; OB folds, beta-barrels,
structural genomics, PSI-2, protein initiative; 2.00A
{Homo sapiens} SCOP: b.40.16.1 b.40.16.1
Length = 206
Score = 29.5 bits (66), Expect = 3.3
Identities = 17/85 (20%), Positives = 33/85 (38%), Gaps = 17/85 (20%)
Query: 385 IDEVDISNDVNSDQKIEVRENLSENAAQNTKVEKLNKKTT--------TKTKKNVSPDTE 436
++E ++ +Q EV + A + K++ L+K+ + KK V+ T
Sbjct: 86 VNEESTVSEAGPNQTFEVPNKIINRAKETLKIDILHKQASGNIVYGVFMLHKKTVNQKT- 144
Query: 437 GIVYRTDD-------IISVQFTNIK 454
+Y D + + Q NI
Sbjct: 145 -TIYEIQDDRGKMDVVGTGQCHNIP 168
>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes,
DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo
sapiens} SCOP: d.3.1.9 PDB: 2ayo_A
Length = 404
Score = 29.6 bits (66), Expect = 4.0
Identities = 6/64 (9%), Positives = 14/64 (21%), Gaps = 3/64 (4%)
Query: 614 YSNSGTVLHFLVRIPPFTSMFLNYQ-DNNFDLPDRTFHNLATTWRLTSSESTTDVKELIP 672
Y N+ + + +P Y + + R + P
Sbjct: 25 YMNA--TVQCIRSVPELKDALKRYAGALRASGEMASAQYITAALRDLFDSMDKTSSSIPP 82
Query: 673 ELFY 676
+
Sbjct: 83 IILL 86
>3d9x_A Adhesin A; BADA, trimeric adhesin, structure modules, high
resolution, cell adhesion; 1.13A {Bartonella henselae}
Length = 163
Score = 28.7 bits (63), Expect = 5.0
Identities = 14/69 (20%), Positives = 28/69 (40%)
Query: 376 AETKRIHNAIDEVDISNDVNSDQKIEVRENLSENAAQNTKVEKLNKKTTTKTKKNVSPDT 435
A +++I + D ++ VN Q ++ + E A + V++ + K+ DT
Sbjct: 92 AGSQKITGVAEGTDANDAVNFGQLKKIETEVKEQVAASGFVKQDSDTKYLTIGKDTDGDT 151
Query: 436 EGIVYRTDD 444
I D
Sbjct: 152 INIANNKSD 160
>1iap_A Guanine nucleotide exchange factor P115rhogef; RGS, RGRGS,
signaling protein; 1.90A {Homo sapiens} SCOP: a.91.1.1
Length = 211
Score = 29.0 bits (64), Expect = 5.5
Identities = 7/55 (12%), Positives = 15/55 (27%), Gaps = 3/55 (5%)
Query: 621 LHFLVRIPPFTSMFLNYQDNNFDLPDRTFHNLATTWRLTSSESTTDVKELIPELF 675
L + R P L + F+ A + + K+ + +
Sbjct: 8 LEQVKRRPAHLMALLQHVALQFEPGPLLCCLHADMLGSLGPK---EAKKAFLDFY 59
>3ab3_B RHO guanine nucleotide exchange factor 1; signal transduction,
protein complex, GTP-binding, membrane, transducer,
lipoprotein, nucleotide-binding; HET: GDP; 2.40A {Homo
sapiens} PDB: 1shz_C*
Length = 246
Score = 29.1 bits (64), Expect = 5.8
Identities = 7/55 (12%), Positives = 15/55 (27%), Gaps = 3/55 (5%)
Query: 621 LHFLVRIPPFTSMFLNYQDNNFDLPDRTFHNLATTWRLTSSESTTDVKELIPELF 675
L + R P L + F+ A + + K+ + +
Sbjct: 62 LEQVKRRPAHLMALLQHVALQFEPGPLLCCLHADMLGSLGPK---EAKKAFLDFY 113
>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
oxidoreductase, PSI-2, protein structur initiative;
1.90A {Vibrio parahaemolyticus}
Length = 230
Score = 28.7 bits (65), Expect = 6.4
Identities = 5/22 (22%), Positives = 13/22 (59%)
Query: 666 DVKELIPELFYLADILVNNEGF 687
+V++L +L + +V++ G
Sbjct: 61 EVEQLFEQLDSIPSTVVHSAGS 82
>2nyi_A Unknown protein; protein structure initiative, PSI, center for
eukaryotic structural genomics, CESG, structural
genomics; 1.80A {Galdieria sulphuraria}
Length = 195
Score = 28.2 bits (62), Expect = 7.8
Identities = 11/44 (25%), Positives = 18/44 (40%)
Query: 431 VSPDTEGIVYRTDDIISVQFTNIKEIHNRRYNLQEKAIELFLIN 474
PD+EGIV +++ + NI E+ LF +
Sbjct: 99 EGPDSEGIVEAVTAVLAKKGANIVELETETLPAPFAGFTLFRMG 142
>3sm9_A Mglur3, metabotropic glutamate receptor 3; structural genomics,
structural genomics consortium, SGC, CE membrane,
G-protein coupled receptor; HET: Z99; 2.26A {Homo
sapiens}
Length = 479
Score = 28.6 bits (64), Expect = 8.3
Identities = 16/122 (13%), Positives = 29/122 (23%), Gaps = 19/122 (15%)
Query: 34 SIMWNIRHTLRTKTSQLII---WILEPNRSTNLRIFLINTL-----RNEIY-LKEILTNL 84
++ + T + W + + + + +L
Sbjct: 258 ELIAAASRANASFT--WVASDGWGAQESIIKGSEHVAYGAITLELASQPVRQFDRYFQSL 315
Query: 85 FVNNNLEIKFILFLWELIYCCKLNNDD--LRVCYEFEAKLKSIINHDIGNSNSKLNREVY 142
NN + WE + C L N RVC + + S V
Sbjct: 316 NPYNNHRNPWFRDFWEQKFQCSLQNKRNHRRVCDK-HLAIDSSNYEQESKIMF-----VV 369
Query: 143 IA 144
A
Sbjct: 370 NA 371
>1p4p_A OSPB, outer surface protein B; intermolecular beta sheet, extended
beta sheet, membrane protein; 2.00A {Borrelia
burgdorferi} SCOP: b.76.1.1 PDB: 1rjl_C
Length = 145
Score = 27.8 bits (61), Expect = 9.4
Identities = 27/110 (24%), Positives = 46/110 (41%), Gaps = 11/110 (10%)
Query: 348 TNAVTEEFSEHEQVMSEGKNSE--------EPNETGAETKRIHNAIDEVDISNDVNSDQK 399
+N T E+S+ + K E E + +T I E ++ ++
Sbjct: 12 SNGTTLEYSQITDADNATKAVETLKNSIKLEGSLVVGKTTVE---IKEGTVTLKREIEKD 68
Query: 400 IEVRENLSENAAQNTKVEKLNKKTTTKTKKNVSPDTEGIVYRTDDIISVQ 449
+V+ L++ A N K K T+T T S T+ +V+ TD I+VQ
Sbjct: 69 GKVKVFLNDTAGSNKKTGKWEDSTSTLTISADSKKTKDLVFLTDGTITVQ 118
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.133 0.397
Gapped
Lambda K H
0.267 0.0472 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 11,862,346
Number of extensions: 702739
Number of successful extensions: 1535
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1523
Number of HSP's successfully gapped: 33
Length of query: 803
Length of database: 6,701,793
Length adjustment: 101
Effective length of query: 702
Effective length of database: 3,881,772
Effective search space: 2725003944
Effective search space used: 2725003944
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (27.9 bits)