RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10776
         (803 letters)



>d1t77a1 a.169.1.1 (A:2186-2489) Lipopolysaccharide-responsive and
           beige-like anchor protein LRBA {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 304

 Score =  345 bits (886), Expect = e-113
 Identities = 129/288 (44%), Positives = 178/288 (61%), Gaps = 10/288 (3%)

Query: 510 SDTIQLWREGHLTNWAYLMILNKMAGRSYNDLMQYPVLPFILSDYKSATLDLTDPKSFRN 569
           S+  Q W+   ++N+ YLM LN +AGRSYNDL QYPV P+++++Y+S  LDLT P +FR+
Sbjct: 24  SNMTQRWQHREISNFEYLMFLNTIAGRSYNDLNQYPVFPWVITNYESEELDLTLPTNFRD 83

Query: 570 LKKPMAVQDKKNESHYVNNYNYLAREMCDAVGGVNQEPYHYGSHYSNSGTVLHFLVRIPP 629
           L KP+   + K  + +   Y     +            +HYG+HYS +  VL +L+RI P
Sbjct: 84  LSKPIGALNPKRAAFFAERYESWEDD--------QVPKFHYGTHYSTASFVLAWLLRIEP 135

Query: 630 FTSMFLNYQDNNFDLPDRTFHNLATTWRLTSSESTTDVKELIPELFYLADILVNNEGFDF 689
           FT+ FLN Q   FD  DRTF +++  WR  S   T+D+KELIPE +YL ++ VN   ++ 
Sbjct: 136 FTTYFLNLQGGKFDHADRTFSSISRAWR-NSQRDTSDIKELIPEFYYLPEMFVNFNNYNL 194

Query: 690 GVRQNGQRVDSVILPPWAPDPRTFIMVHRQSLESELVSENLPHWIDLVFGYKQSGKAAVD 749
           GV  +G  V  V LPPWA     F+ ++R +LESE VS  L  WIDL+FGYKQ G  AV 
Sbjct: 195 GVMDDGTVVSDVELPPWAKTSEEFVHINRLALESEFVSCQLHQWIDLIFGYKQQGPEAVR 254

Query: 750 AINVFHPATYYGF-DIAAIPDPLERTAWETMIRTYGQTPRQLFKSAHP 796
           A+NVF+  TY G  ++ +I DP+ R A E  IR++GQTP QL    HP
Sbjct: 255 ALNVFYYLTYEGAVNLNSITDPVLREAVEAQIRSFGQTPSQLLIEPHP 302


>d1t77a2 b.55.1.6 (A:2076-2185) Lipopolysaccharide-responsive and
           beige-like anchor protein LRBA {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 110

 Score = 60.7 bits (147), Expect = 5e-12
 Identities = 19/62 (30%), Positives = 30/62 (48%)

Query: 434 DTEGIVYRTDDIISVQFTNIKEIHNRRYNLQEKAIELFLINGKNYLFAFENHNDREHFLN 493
           D + + Y         FT I+ I +RRY LQ  A+E+F+ N    +F F +    +  +N
Sbjct: 44  DPKILAYTEGLHGKWLFTEIRSIFSRRYLLQNTALEIFMANRVAVMFNFPDPATVKKVVN 103

Query: 494 EL 495
            L
Sbjct: 104 FL 105



 Score = 26.4 bits (58), Expect = 6.5
 Identities = 11/35 (31%), Positives = 17/35 (48%)

Query: 309 VTYMCCTHLITPSKQIQGELLITSAGLKFIPFNES 343
           V+      L+ PS  ++G L +TS+ L F    E 
Sbjct: 3   VSLSTPAQLVAPSVVVKGTLSVTSSELYFEVDEED 37


>d1ospo_ b.76.1.1 (O:) Outer surface protein A {Lyme disease
           spirochete (Borrelia burgdorferi) [TaxId: 139]}
          Length = 251

 Score = 29.4 bits (66), Expect = 1.6
 Identities = 16/62 (25%), Positives = 33/62 (53%)

Query: 388 VDISNDVNSDQKIEVRENLSENAAQNTKVEKLNKKTTTKTKKNVSPDTEGIVYRTDDIIS 447
           V +S +++   ++ V  N ++++A   K    N  T+T T    S  T+ +V+  ++ I+
Sbjct: 163 VTLSKNISKSGEVSVELNDTDSSAATKKTAAWNSGTSTLTITVNSKKTKDLVFTKENTIT 222

Query: 448 VQ 449
           VQ
Sbjct: 223 VQ 224


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.133    0.397 

Gapped
Lambda     K      H
   0.267   0.0639    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,943,377
Number of extensions: 137901
Number of successful extensions: 340
Number of sequences better than 10.0: 1
Number of HSP's gapped: 337
Number of HSP's successfully gapped: 19
Length of query: 803
Length of database: 2,407,596
Length adjustment: 93
Effective length of query: 710
Effective length of database: 1,130,706
Effective search space: 802801260
Effective search space used: 802801260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.9 bits)