Query psy10777
Match_columns 246
No_of_seqs 138 out of 321
Neff 3.7
Searched_HMMs 46136
Date Fri Aug 16 18:14:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10777.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10777hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2232|consensus 100.0 6.2E-85 1.3E-89 630.8 15.5 204 1-246 411-676 (734)
2 PTZ00487 ceramidase; Provision 100.0 3.3E-80 7.1E-85 616.3 19.5 203 1-246 394-657 (715)
3 PF04734 Ceramidase_alk: Neutr 100.0 3.6E-80 7.8E-85 613.2 14.3 204 1-246 353-616 (674)
4 COG1366 SpoIIAA Anti-anti-sigm 46.4 42 0.00092 26.1 4.6 49 72-121 4-53 (117)
5 TIGR02886 spore_II_AA anti-sig 36.0 1.1E+02 0.0024 22.9 5.3 46 75-121 3-48 (106)
6 TIGR00377 ant_ant_sig anti-ant 35.3 1.5E+02 0.0033 21.9 6.0 50 71-121 3-52 (108)
7 cd07042 STAS_SulP_like_sulfate 27.4 1.4E+02 0.0031 21.6 4.5 44 78-121 7-50 (107)
8 cd07041 STAS_RsbR_RsbS_like Su 25.1 1.9E+02 0.004 21.7 4.9 42 79-121 9-50 (109)
9 PF01740 STAS: STAS domain; I 24.5 2.5E+02 0.0055 21.2 5.6 49 74-122 3-58 (117)
10 cd06844 STAS Sulphate Transpor 21.1 2.3E+02 0.005 21.1 4.7 46 75-121 3-48 (100)
No 1
>KOG2232|consensus
Probab=100.00 E-value=6.2e-85 Score=630.75 Aligned_cols=204 Identities=56% Similarity=0.999 Sum_probs=195.6
Q ss_pred CCccccccCCCCCCCCCccCCCCCCCCchHHHHHhhhcCCChhhhhhcCCCceeeecCCCCCCCCCCCceeEEeEEEEec
Q psy10777 1 MGYSFAAGTTDGPGAFTFKQGTTNPDNPLWNVVTNILATPTSDLIACQKPKPILLATGLMNVPHQWQPNTVSTQLVRIGH 80 (246)
Q Consensus 1 mG~sFaAGttDGpg~f~F~qG~~~~~np~w~~v~~~l~~ps~~~~~Cq~pKpiLl~tG~~~~p~~w~p~ilpvQilRIG~ 80 (246)
||||||||||||||+|+|+||++. +||||++||++|++|++||++||+||||||+||||++||+|+|+||++||+|||+
T Consensus 411 mGf~FAAGTtDGpGafdF~QG~~~-gnpfW~~VRn~l~~P~~e~i~Ch~PKPILL~TGemt~PydW~P~Iv~~QilriGq 489 (734)
T KOG2232|consen 411 MGFSFAAGTTDGPGAFDFTQGDDQ-GNPFWRLVRNVLKTPTEEQIKCHKPKPILLDTGEMTKPYDWAPSIVSVQILRIGQ 489 (734)
T ss_pred ccccccccccCCCCccccccCCcC-CChHHHHHHHHHcCCCHHHhcccCCCceEecccccCCCcCCCccccchheeeecc
Confidence 899999999999999999999998 8999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeeCCchhhhhHHHHHHHHHHHhcc---CCCCcEEEEcccccCccccCChhhhhhhhhhhccccccccccccccccc
Q psy10777 81 LVLVGVPGELTTMAGRRLRRALQDELGL---LMESDVIIAGLANTYADYVTTPEEYQIRRCLYHLRTSYPYHLHQSVAHP 157 (246)
Q Consensus 81 L~Iv~vPgEfTTmAGrRLR~av~~~~~~---~~~~~VvVaGlAN~Y~gYVTTpEEY~~~~~~~~~~~~~~~~~~~~~~~~ 157 (246)
|+|++||||||||||||||++|++++.+ ..+.+|||+||+|.|++|++|+|||+
T Consensus 490 l~I~aVPgEFTTMaGRRLR~avka~~~~~g~~~~~~VVIaGLtN~YsqYi~T~EEYq----------------------- 546 (734)
T KOG2232|consen 490 LVILAVPGEFTTMAGRRLRDAVKAALKSSGNSINMHVVIAGLTNIYSQYITTFEEYQ----------------------- 546 (734)
T ss_pred EEEEecCccceehhhHHHHHHHHHHHHhcCCCcceEEEEeccccchhhhcccHHHHh-----------------------
Confidence 9999999999999999999999999643 24679999999999999999999999
Q ss_pred chhhhcccccccccceeeecccccccCCccHHHHHHHHHHHHHHhh----------------------------------
Q psy10777 158 FLAYWSNYINSFGFQIQRYEGASTIYGPHTLTIYISQYLKMAQHLA---------------------------------- 203 (246)
Q Consensus 158 ~~~~~~~~~~~~~~~~q~yeg~sT~~gp~tl~ay~~~~~~la~~l~---------------------------------- 203 (246)
+|||||||||||||||++|||+|++||+||.
T Consensus 547 ---------------vQRYE~ASTlyGpHtlS~Yiq~FkkLakal~~~~t~~~GPqPPdl~dk~islltpv~~D~tP~g~ 611 (734)
T KOG2232|consen 547 ---------------VQRYEGASTLYGPHTLSAYIQEFKKLAKALVRDETVDRGPQPPDLLDKQISLLTPVVVDGTPIGT 611 (734)
T ss_pred ---------------HHHhhccccccCcchhhHHHHHHHHHHHHHhhcCCCCCCCCCchHhhhhhhccCceeeccCccCC
Confidence 9999999999999999999999999999997
Q ss_pred -------------------------hhcCCCCCccCCCceEEEEeeCCCCCCCCCeEEEeeCCCCCCC
Q psy10777 204 -------------------------IAGHPRNNLFHEKSYLTVERLTPSESGNSTWKIVATDANWDTK 246 (246)
Q Consensus 204 -------------------------~~~~PrNnl~~e~tfl~Ver~~~~~~~~~~W~~v~~D~dw~t~ 246 (246)
++|||||||++|+||++|||+.++ +.+|++|+||+||+||
T Consensus 612 ~FGdV~s~vp~k~~~r~g~~v~v~f~sanPrNdl~Te~Tf~~VEr~~~~---~~tW~~vydD~~~~~r 676 (734)
T KOG2232|consen 612 DFGDVKSDVPNKSYFRRGTQVKVTFRSANPRNDLMTEGTFATVERLEEG---DKTWKPVYDDDDWELR 676 (734)
T ss_pred ccccccCCCCCchhhccccEEEEEEeccCCCcccccccceeeehhhhcc---CceeeeeecCccceeE
Confidence 899999999999999999999865 2459999999999986
No 2
>PTZ00487 ceramidase; Provisional
Probab=100.00 E-value=3.3e-80 Score=616.27 Aligned_cols=203 Identities=53% Similarity=0.990 Sum_probs=193.3
Q ss_pred CCccccccCCCCCCCCCccCCCCCC-CCchHHHHHhhhcCCChhhhhhcCCCceeeecCCCCCCCCCCCceeEEeEEEEe
Q psy10777 1 MGYSFAAGTTDGPGAFTFKQGTTNP-DNPLWNVVTNILATPTSDLIACQKPKPILLATGLMNVPHQWQPNTVSTQLVRIG 79 (246)
Q Consensus 1 mG~sFaAGttDGpg~f~F~qG~~~~-~np~w~~v~~~l~~ps~~~~~Cq~pKpiLl~tG~~~~p~~w~p~ilpvQilRIG 79 (246)
||||||||||||||+|+|+||++++ +||||+.++++++.|+++|++||+||||||++| |..||+|+|+|||+||+|||
T Consensus 394 ~G~sfaAGt~DGpg~f~f~qg~~~~~~~p~w~~~~~~~~~p~~~~~~cq~pKpiLl~~G-~~~p~~w~p~iv~iQi~riG 472 (715)
T PTZ00487 394 MGYSFAAGTTDGPGAFNFKQGDNSTKGNPFWNFIGSFIAKPTPEQILCQSPKPILLDVG-MVEPIPWVPDVMPIQIMTIG 472 (715)
T ss_pred cCcccccccCCCCCCccccCCCCCcCCCcHHHHHhhhccCCChHHhcccCCCceeecCC-CCCCCCCcCceeeeEEEEEe
Confidence 8999999999999999999998653 589999999999999999999999999999999 67799999999999999999
Q ss_pred cEEEEeeCCchhhhhHHHHHHHHHHHhcc-CCCCcEEEEcccccCccccCChhhhhhhhhhhcccccccccccccccccc
Q psy10777 80 HLVLVGVPGELTTMAGRRLRRALQDELGL-LMESDVIIAGLANTYADYVTTPEEYQIRRCLYHLRTSYPYHLHQSVAHPF 158 (246)
Q Consensus 80 ~L~Iv~vPgEfTTmAGrRLR~av~~~~~~-~~~~~VvVaGlAN~Y~gYVTTpEEY~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (246)
+|+|+++|||||||||||||++|+++++. ..+++|||+||||+|+|||||+|||+
T Consensus 473 ~l~i~~~P~E~TtmaGrRlr~aV~~~~~~~~~~~~Vvl~G~aN~Y~~YvtT~EEY~------------------------ 528 (715)
T PTZ00487 473 QIVLVAVPGEFTTMSGRRLRNTVREIIGTSIENPIVLIAGLSNTYSGYIATFEEFQ------------------------ 528 (715)
T ss_pred eEEEEecCcccchhHHHHHHHHHHHHhhcCCCCceEEEEecccccccccCCHHHhh------------------------
Confidence 99999999999999999999999999753 45678999999999999999999999
Q ss_pred hhhhcccccccccceeeecccccccCCccHHHHHHHHHHHHHHhh-----------------------------------
Q psy10777 159 LAYWSNYINSFGFQIQRYEGASTIYGPHTLTIYISQYLKMAQHLA----------------------------------- 203 (246)
Q Consensus 159 ~~~~~~~~~~~~~~~q~yeg~sT~~gp~tl~ay~~~~~~la~~l~----------------------------------- 203 (246)
+|||||||||||||||+||+|+|.+||++|+
T Consensus 529 --------------~QrYEGaSTlyGp~TL~ay~q~~~~la~al~~~~~~~~Gp~Pp~~~~~~~~~~~~v~~D~~p~g~~ 594 (715)
T PTZ00487 529 --------------VQRYEGASTVFGPHTLGAYQQEFDKLAQSIVDGQPISPGLKPRNLYGHTWFFLPPVIVDSAPFFDD 594 (715)
T ss_pred --------------hhhhccccceeCchHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcccCCcccccCCcccCCCCCCCc
Confidence 9999999999999999999999999999996
Q ss_pred ------------------------hhcCCCCCccCCCceEEEEeeCCCCCCCCCeEEEeeCCCCCCC
Q psy10777 204 ------------------------IAGHPRNNLFHEKSYLTVERLTPSESGNSTWKIVATDANWDTK 246 (246)
Q Consensus 204 ------------------------~~~~PrNnl~~e~tfl~Ver~~~~~~~~~~W~~v~~D~dw~t~ 246 (246)
++||||||||+|+||++|||++++ +.|++|+||+||+|+
T Consensus 595 fGdv~~~~~~~~~y~~g~~v~~~F~~a~Prn~l~~~~tf~~Ve~~~~~----~~W~~v~~D~dw~t~ 657 (715)
T PTZ00487 595 FGDLYQDVDTEKVYSNNDTVSAEFYGGNPRNNFMTESSFLTVDKLNEK----NQWTTILVDGDWDTK 657 (715)
T ss_pred cCcEeccCCcccccCCCCEEEEEEEecCCCCccccCcceEEEEEecCC----CceeEeccCCCcceE
Confidence 799999999999999999999855 889999999999985
No 3
>PF04734 Ceramidase_alk: Neutral/alkaline non-lysosomal ceramidase; InterPro: IPR006823 This family represents a group of neutral/alkaline ceramidases found in both bacteria and eukaryotes [, , ]. They hydrolyse the sphingolipid ceramide into sphingosine and free fatty acid.; PDB: 2ZXC_A 2ZWS_A.
Probab=100.00 E-value=3.6e-80 Score=613.20 Aligned_cols=204 Identities=59% Similarity=1.057 Sum_probs=151.0
Q ss_pred CCccccccCCCCCCCCCccCCCC-CCCCchHHHHHhhhcCCChhhhhhcCCCceeeecCCCCCCCCCCCceeEEeEEEEe
Q psy10777 1 MGYSFAAGTTDGPGAFTFKQGTT-NPDNPLWNVVTNILATPTSDLIACQKPKPILLATGLMNVPHQWQPNTVSTQLVRIG 79 (246)
Q Consensus 1 mG~sFaAGttDGpg~f~F~qG~~-~~~np~w~~v~~~l~~ps~~~~~Cq~pKpiLl~tG~~~~p~~w~p~ilpvQilRIG 79 (246)
||||||||||||||.|+|+||++ ..+||||+.|++++++|++++.+||+||||||+||+|++||+|+|+|||+||+|||
T Consensus 353 ~G~sfaAGt~DGpg~~~f~qg~~~~~~~p~w~~v~~~~~~p~~~~~~cq~pKpiLl~~G~~~~p~~w~p~i~~~Qi~riG 432 (674)
T PF04734_consen 353 MGYSFAAGTEDGPGAFDFTQGDTEVEGNPFWDLVRDFLKKPSPEQVACQAPKPILLPTGEMNFPYPWVPNIVPIQIVRIG 432 (674)
T ss_dssp EE----SSSSSSS-SS---SSS------HHHHHHT-SSS---HHHHHHTTT--EEE--TT--SSS-SS-SEEEEEEEEET
T ss_pred cccccccccccCCCcccccCCCcccccchHHHHHhhhccCCCHHHHhccCCCcEEEeccccCCCcccCCceEEEEEEEEc
Confidence 79999999999999999999998 22799999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEeeCCchhhhhHHHHHHHHHHHhccCC--CCcEEEEcccccCccccCChhhhhhhhhhhccccccccccccccccc
Q psy10777 80 HLVLVGVPGELTTMAGRRLRRALQDELGLLM--ESDVIIAGLANTYADYVTTPEEYQIRRCLYHLRTSYPYHLHQSVAHP 157 (246)
Q Consensus 80 ~L~Iv~vPgEfTTmAGrRLR~av~~~~~~~~--~~~VvVaGlAN~Y~gYVTTpEEY~~~~~~~~~~~~~~~~~~~~~~~~ 157 (246)
+|+|+++|||||||+|||||++|++++.... +++|||+||||+|+|||||||||+
T Consensus 433 ~l~i~~~P~E~TtmaGrRlr~~v~~~~~~~~~~~~~vvi~g~sN~Y~~YvtT~EEY~----------------------- 489 (674)
T PF04734_consen 433 QLVIVAVPGEFTTMAGRRLREAVAEALGAAGIDDPHVVIAGLSNGYSHYVTTPEEYQ----------------------- 489 (674)
T ss_dssp TEEEEE-SSEE-HHHHHHHHHHHHHHHGGGT----EEEEE-SBSS---EE--HHHHH-----------------------
T ss_pred CEEEEEcCCcchhHHHHHHHHHHHHHHhhcCCCceEEEEEeeccCcccccCCHHHhh-----------------------
Confidence 9999999999999999999999999976543 569999999999999999999999
Q ss_pred chhhhcccccccccceeeecccccccCCccHHHHHHHHHHHHHHhh----------------------------------
Q psy10777 158 FLAYWSNYINSFGFQIQRYEGASTIYGPHTLTIYISQYLKMAQHLA---------------------------------- 203 (246)
Q Consensus 158 ~~~~~~~~~~~~~~~~q~yeg~sT~~gp~tl~ay~~~~~~la~~l~---------------------------------- 203 (246)
+|||||||||||||||+||+|+|.+||++|+
T Consensus 490 ---------------~Q~YEg~sTl~Gp~tl~a~~q~~~~la~~l~~~~~~~~gp~p~~~~~~~~~~~~~v~~D~~p~g~ 554 (674)
T PF04734_consen 490 ---------------VQRYEGASTLYGPHTLAAYIQEFARLARALADGEPVPPGPSPPDLSSKQISLPPGVVFDAPPLGK 554 (674)
T ss_dssp ---------------H--HHHHT-TT-TTHHHHHHHHHHHHHHHHHHT------------GGG--B-S--------STT-
T ss_pred ---------------cCcccccceeeCHhHHHHHHHHHHHHHHHHhhcccCCCCCCCcccccccccccccCCCCCCCCCC
Confidence 9999999999999999999999999999997
Q ss_pred -----------------------hhcCCCCCccCCCceEEEEeeCCCCCCCCCeEEEeeCCCCCCC
Q psy10777 204 -----------------------IAGHPRNNLFHEKSYLTVERLTPSESGNSTWKIVATDANWDTK 246 (246)
Q Consensus 204 -----------------------~~~~PrNnl~~e~tfl~Ver~~~~~~~~~~W~~v~~D~dw~t~ 246 (246)
+|||||||||+|+|||+|||++++ +.|++|+||+||+|+
T Consensus 555 ~fGdv~~~~~~~y~~g~~v~~~F~~a~Prn~l~~~~tfl~Ver~~~~----~~W~~v~~D~dw~t~ 616 (674)
T PF04734_consen 555 SFGDVLQQPNPSYRPGDTVSATFVGANPRNNLRLEGTFLTVERLESG----GSWQTVADDADWSTR 616 (674)
T ss_dssp -TT-EEE---SEEETT-EEEEEEEE--GGG---TTS-SEEEEEEES-----S--EEEEETTSTTEE
T ss_pred CcCceEeCCcCccCCCCeEEEEEeeeCCCCccCCCCCeEEEEEecCC----CCeEEEEeCCCccEE
Confidence 899999999999999999999854 899999999999985
No 4
>COG1366 SpoIIAA Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) [Signal transduction mechanisms]
Probab=46.40 E-value=42 Score=26.14 Aligned_cols=49 Identities=16% Similarity=0.275 Sum_probs=36.1
Q ss_pred EEeEEEEecE-EEEeeCCchhhhhHHHHHHHHHHHhccCCCCcEEEEcccc
Q psy10777 72 STQLVRIGHL-VLVGVPGELTTMAGRRLRRALQDELGLLMESDVIIAGLAN 121 (246)
Q Consensus 72 pvQilRIG~L-~Iv~vPgEfTTmAGrRLR~av~~~~~~~~~~~VvVaGlAN 121 (246)
.+++..+.+. .++.+.||+.......+|+.+.+.......+. +|.-+++
T Consensus 4 ~~~~~~~~~~~~vl~l~G~lD~~~a~~~~e~~~~~~~~~~~~~-ivIDls~ 53 (117)
T COG1366 4 SIPIIKIVDGILVLPLIGELDAARAPALKETLLEVIAASGARG-LVIDLSG 53 (117)
T ss_pred CCceEEeeceEEEEEeeEEEchHHHHHHHHHHHHHHhcCCCcE-EEEECCC
Confidence 4566777777 58999999999999999999987754444444 5555554
No 5
>TIGR02886 spore_II_AA anti-sigma F factor antagonist. The anti-sigma F factor antagonist, also called stage II sporulation protein AA, is a protein universal among endospore-forming bacteria, all of which belong to the Firmcutes
Probab=36.02 E-value=1.1e+02 Score=22.87 Aligned_cols=46 Identities=26% Similarity=0.430 Sum_probs=33.9
Q ss_pred EEEEecEEEEeeCCchhhhhHHHHHHHHHHHhccCCCCcEEEEcccc
Q psy10777 75 LVRIGHLVLVGVPGELTTMAGRRLRRALQDELGLLMESDVIIAGLAN 121 (246)
Q Consensus 75 ilRIG~L~Iv~vPgEfTTmAGrRLR~av~~~~~~~~~~~VvVaGlAN 121 (246)
+=+.++..++-+.|+++-....++++.+.+.+... ..+.+|.-+++
T Consensus 3 ~~~~~~~~vi~l~G~L~f~~~~~~~~~l~~~~~~~-~~~~vilDls~ 48 (106)
T TIGR02886 3 FEVKGDVLIVRLSGELDHHTAERVRRKIDDAIERR-PIKHLILNLKN 48 (106)
T ss_pred EEEECCEEEEEEecccchhhHHHHHHHHHHHHHhC-CCCEEEEECCC
Confidence 34578899999999999999999999998875322 23455555554
No 6
>TIGR00377 ant_ant_sig anti-anti-sigma factor. This superfamily includes small (105-125 residue) proteins related to SpoIIAA of Bacillus subtilis, an anti-anti-sigma factor. SpoIIAA can bind to and inhibit the anti-sigma F factor SpoIIAB. Also, it can be phosphorylated by SpoIIAB on a Ser residue at position 59 of the seed alignment. A similar arrangement is inferred for RsbV, an anti-anti-sigma factor for sigma B. This Ser is fairly well conserved within a motif resembling MXS[STA]G[VIL]X[VIL][VILF] among homologous known or predicted anti-anti-sigma factors. Regions similar to SpoIIAA and apparently homologous, but differing considerably near the phosphorlated Ser of SpoIIAA, appear in a single copy in several longer proteins.
Probab=35.31 E-value=1.5e+02 Score=21.88 Aligned_cols=50 Identities=18% Similarity=0.224 Sum_probs=36.2
Q ss_pred eEEeEEEEecEEEEeeCCchhhhhHHHHHHHHHHHhccCCCCcEEEEcccc
Q psy10777 71 VSTQLVRIGHLVLVGVPGELTTMAGRRLRRALQDELGLLMESDVIIAGLAN 121 (246)
Q Consensus 71 lpvQilRIG~L~Iv~vPgEfTTmAGrRLR~av~~~~~~~~~~~VvVaGlAN 121 (246)
+.+.+-+.|+..++.+.|+++...-..+++.+.+.... +....++.-+++
T Consensus 3 ~~i~~~~~~~~~vi~~~G~l~~~~~~~~~~~l~~~~~~-~~~~~vvidls~ 52 (108)
T TIGR00377 3 LNIETEVQEGVVIVRLSGELDAHTAPLLREKVTPAAER-TGPRPIVLDLED 52 (108)
T ss_pred eEEEEEEECCEEEEEEecccccccHHHHHHHHHHHHHh-cCCCeEEEECCC
Confidence 34566778999999999999999888899888776532 234445544443
No 7
>cd07042 STAS_SulP_like_sulfate_transporter Sulphate Transporter and Anti-Sigma factor antagonist domain of SulP-like sulfate transporters, plays a role in the function and regulation of the transport activity, proposed general NTP binding function. The SulP family is a large and diverse family of anion transporters, with members from eubacteria, plants, fungi, and mammals. They contain 10 to 14 transmembrane helices which form the catalytic core of the protein and a C-terminal extension, the STAS (Sulphate Transporter and AntiSigma factor antagonist) domain which plays a role in the function and regulation of the transport activity. The STAS domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function.
Probab=27.39 E-value=1.4e+02 Score=21.59 Aligned_cols=44 Identities=14% Similarity=0.078 Sum_probs=31.2
Q ss_pred EecEEEEeeCCchhhhhHHHHHHHHHHHhccCCCCcEEEEcccc
Q psy10777 78 IGHLVLVGVPGELTTMAGRRLRRALQDELGLLMESDVIIAGLAN 121 (246)
Q Consensus 78 IG~L~Iv~vPgEfTTmAGrRLR~av~~~~~~~~~~~VvVaGlAN 121 (246)
.++..++.++|+++-.+-..+++.+.+.....+.+..+|.-+++
T Consensus 7 ~~~~~v~~l~G~l~~~~~~~l~~~~~~~~~~~~~~~~lilD~~~ 50 (107)
T cd07042 7 PPGVLIYRIDGPLFFGNAEYFKDRLLRLVDEDPPLKVVILDLSA 50 (107)
T ss_pred CCCEEEEEecCceEeehHHHHHHHHHHHhccCCCceEEEEECCC
Confidence 45678888999999888888888887776433223456666665
No 8
>cd07041 STAS_RsbR_RsbS_like Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain of proteins related to RsbS and RsbR which are part of the "stressosome" complex that plays an important role in the regulation of the bacterial stress activated alternative sigma factor sigma-B. During stress conditions RsbS and RsbR are phosphorylated which leads to the release of RsbT, an activator of of the RsbU phosphatase, which in turn activates RsbV which leads to the release and activation of sigma factor B. RsbS is a single domain protein (STAS domain), while RsbR-like proteins have a well-conserved C-terminal STATS domain and a variable N-terminal domain. The STAS domain is also found in the C- terminal region of sulphate transporters and anti-anti-sigma factors.
Probab=25.12 E-value=1.9e+02 Score=21.74 Aligned_cols=42 Identities=14% Similarity=0.280 Sum_probs=29.4
Q ss_pred ecEEEEeeCCchhhhhHHHHHHHHHHHhccCCCCcEEEEcccc
Q psy10777 79 GHLVLVGVPGELTTMAGRRLRRALQDELGLLMESDVIIAGLAN 121 (246)
Q Consensus 79 G~L~Iv~vPgEfTTmAGrRLR~av~~~~~~~~~~~VvVaGlAN 121 (246)
++..++.+.|++.-.+..++++.+.+..... ..+.+|.-+++
T Consensus 9 ~~~~v~~l~G~L~~~~a~~~~~~l~~~~~~~-~~~~vvlDls~ 50 (109)
T cd07041 9 DGVLVLPLIGDLDDERAEQLQERLLEAISRR-RARGVIIDLTG 50 (109)
T ss_pred CCEEEEeeeeeECHHHHHHHHHHHHHHHHHc-CCCEEEEECCC
Confidence 4688889999999988999998876654322 23455555554
No 9
>PF01740 STAS: STAS domain; InterPro: IPR002645 The STAS (Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function. The establishment of differential gene expression in sporulating Bacillus subtilis involves four protein components one of which is SpoIIAA (P10727 from SWISSPROT). The four components regulate the sporulation sigma factor F. Early in sporulation, SpoIIAA is in the phosphorylated state (SpoIIAA-P), as a result of the activity of the ATP-dependent protein kinase SpoIIAB (P10728 from SWISSPROT). The site at which this protein is a conserved serine. SpoIIAB is an anti-sigma factor that in its free form inhibits F by binding to it. Competition by SpoIIAA (the anti-anti-sigma factor) for binding to SpoIIAB releases Sigma F activity []. The STAS domain is found in the anti-sigma factor antagonist SpoIIAA.; PDB: 3T6O_B 3LKL_B 1H4Z_A 1H4Y_B 1H4X_B 3NY7_A 3OIZ_A 1T6R_A 1VC1_B 1SBO_A ....
Probab=24.49 E-value=2.5e+02 Score=21.17 Aligned_cols=49 Identities=8% Similarity=0.156 Sum_probs=36.7
Q ss_pred eEEEEecEEEEeeCCchhhhhHHHHHHHHHHHhccCC-------CCcEEEEccccc
Q psy10777 74 QLVRIGHLVLVGVPGELTTMAGRRLRRALQDELGLLM-------ESDVIIAGLANT 122 (246)
Q Consensus 74 QilRIG~L~Iv~vPgEfTTmAGrRLR~av~~~~~~~~-------~~~VvVaGlAN~ 122 (246)
++=+.++..|+-+.|++.....-++++.+.+.....+ ....+|.=+++.
T Consensus 3 ~~~~~~~v~ii~~~g~l~f~~~~~~~~~i~~~~~~~~~~~~~~~~~~~vIlD~s~v 58 (117)
T PF01740_consen 3 EIETHDGVLIIRLDGPLFFANAEEFRDRIRKLIDEDPERIKKRQTIKNVILDMSGV 58 (117)
T ss_dssp EEEEETTEEEEEEESEESHHHHHHHHHHHHHHHCCSSS--HTSSSSSEEEEEETTE
T ss_pred eeEEECCEEEEEEeeEEEHHHHHHHHHHHHHhhhcccccccccccceEEEEEEEeC
Confidence 5667889999999999999999999999988864332 124555555543
No 10
>cd06844 STAS Sulphate Transporter and Anti-Sigma factor antagonist domain found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain is found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors, like anti-anti-sigma factors and "stressosome" components. The sigma factor regulators are involved in protein-protein interaction which is regulated by phosphorylation.
Probab=21.13 E-value=2.3e+02 Score=21.15 Aligned_cols=46 Identities=15% Similarity=0.317 Sum_probs=32.6
Q ss_pred EEEEecEEEEeeCCchhhhhHHHHHHHHHHHhccCCCCcEEEEcccc
Q psy10777 75 LVRIGHLVLVGVPGELTTMAGRRLRRALQDELGLLMESDVIIAGLAN 121 (246)
Q Consensus 75 ilRIG~L~Iv~vPgEfTTmAGrRLR~av~~~~~~~~~~~VvVaGlAN 121 (246)
+-..+++.++-+.|+++-.+-.++++.+.+.... +....+|.-+++
T Consensus 3 ~~~~~~v~ii~~~G~l~f~~~~~~~~~l~~~~~~-~~~~~vilDls~ 48 (100)
T cd06844 3 LEKVDDYWVVRLEGELDHHSVEQFKEELLHNITN-VAGKTIVIDISA 48 (100)
T ss_pred eEEECCEEEEEEEEEecHhhHHHHHHHHHHHHHh-CCCCEEEEECCC
Confidence 3467889999999999988889999988765432 223455555553
Done!