Query psy10777
Match_columns 246
No_of_seqs 138 out of 321
Neff 3.7
Searched_HMMs 29240
Date Fri Aug 16 18:14:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10777.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10777hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2zws_A Neutral ceramidase; pri 100.0 7.1E-62 2.4E-66 477.9 16.5 199 1-246 326-585 (646)
2 3zxn_A RSBS, anti-sigma-factor 77.0 4.1 0.00014 31.3 5.3 48 73-121 5-52 (123)
3 1th8_B Anti-sigma F factor ant 52.2 33 0.0011 24.4 5.7 37 71-107 3-39 (116)
4 3t6o_A Sulfate transporter/ant 48.3 38 0.0013 24.9 5.7 48 73-121 7-57 (121)
5 4hyl_A Stage II sporulation pr 42.5 30 0.001 25.0 4.2 49 70-121 3-51 (117)
6 1h4x_A SPOIIAA, anti-sigma F f 42.4 37 0.0013 24.4 4.7 34 73-106 3-37 (117)
7 1sbo_A Putative anti-sigma fac 39.3 22 0.00076 25.0 3.0 49 72-121 5-53 (110)
8 2pz0_A Glycerophosphoryl diest 22.5 1.2E+02 0.0041 25.3 5.1 25 173-197 14-38 (252)
9 2kln_A Probable sulphate-trans 17.3 1.8E+02 0.0062 21.4 4.6 44 78-121 13-57 (130)
10 2hz5_A Dynein light chain 2A, 14.5 2.6E+02 0.0089 21.5 4.9 33 187-223 51-83 (106)
No 1
>2zws_A Neutral ceramidase; prism fold and beta-sandwich fold, hydrolase, lipid metaboli secreted; HET: PLM; 1.40A {Pseudomonas aeruginosa} PDB: 2zxc_A*
Probab=100.00 E-value=7.1e-62 Score=477.86 Aligned_cols=199 Identities=43% Similarity=0.747 Sum_probs=176.0
Q ss_pred CCccccccC-CCCCCCCCccCCCCCCCCchHHHHHhhhcCC-ChhhhhhcCCCceeeecCCCCCCCCCCCceeEEeEEEE
Q psy10777 1 MGYSFAAGT-TDGPGAFTFKQGTTNPDNPLWNVVTNILATP-TSDLIACQKPKPILLATGLMNVPHQWQPNTVSTQLVRI 78 (246)
Q Consensus 1 mG~sFaAGt-tDGpg~f~F~qG~~~~~np~w~~v~~~l~~p-s~~~~~Cq~pKpiLl~tG~~~~p~~w~p~ilpvQilRI 78 (246)
||+||+||+ +||||.|+|+|| + ||||+.+++++++| ++++.+||+||||||++|+ ++||+|+|+++++|++||
T Consensus 326 ~g~s~aag~~~dgpg~~~f~q~-~---~~~w~~~~~~l~~~~~~~~~~cq~~k~ill~~g~-~~p~~~~~~~v~vqilri 400 (646)
T 2zws_A 326 IGTSLAAGSTEDGPGPLGLEEG-N---NPFLSALGGLLTGVPPQELVQCQAEKTILADTGN-KKPYPWTPTVLPIQMFRI 400 (646)
T ss_dssp EEC---------------CCSS-C---CHHHHHTTCSCCCCCCHHHHHHTTTCCEEECCTT-CSSSCSSCSEEEEEEEEE
T ss_pred hchhhhcCCcccCCCccccccc-c---chhhhhhhhhhccccchhHHhhccCcceecccCC-CCCcccccceEEEEEEEE
Confidence 689999999 999999999999 4 99999999999999 7999999999999999999 889999999999999999
Q ss_pred ecEEEEeeCCchhhhhHHHHHHHHHHHhccCCCCcEEEEcccccCccccCChhhhhhhhhhhcccccccccccccccccc
Q psy10777 79 GHLVLVGVPGELTTMAGRRLRRALQDELGLLMESDVIIAGLANTYADYVTTPEEYQIRRCLYHLRTSYPYHLHQSVAHPF 158 (246)
Q Consensus 79 G~L~Iv~vPgEfTTmAGrRLR~av~~~~~~~~~~~VvVaGlAN~Y~gYVTTpEEY~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (246)
|+|+|+++|||+|||+|+|||+++++++...+.+.|+|+||||+|.|||+|+|||+
T Consensus 401 Gdl~iv~~PgE~tt~~G~rlr~~~~~~~~~~~~~~v~v~GyaN~y~gYi~T~EeY~------------------------ 456 (646)
T 2zws_A 401 GQLELLGAPAEFTVMAGVRIRRAVQAASEAAGIRHVVFNGYANAYASYVTTREEYA------------------------ 456 (646)
T ss_dssp TTEEEEECSSEECHHHHHHHHHHHHHHHGGGTCCEEEEECSBSSCCCEECCHHHHH------------------------
T ss_pred CCEEEEecCcHHHHHHHHHHHHHHHhhhccCCCceEEEEecCCCCCCccCCHHHHh------------------------
Confidence 99999999999999999999999999876535679999999999999999999999
Q ss_pred hhhhcccccccccceeeecccccccCCccHHHHHHHHHHHHHHhh-----------------------------------
Q psy10777 159 LAYWSNYINSFGFQIQRYEGASTIYGPHTLTIYISQYLKMAQHLA----------------------------------- 203 (246)
Q Consensus 159 ~~~~~~~~~~~~~~~q~yeg~sT~~gp~tl~ay~~~~~~la~~l~----------------------------------- 203 (246)
.|+|||+||+|||+|+++|++++.+|+++|.
T Consensus 457 --------------~q~YEg~sT~~gp~tl~~~i~~~~~L~~~l~~~~~~~~g~~p~~~~~~~~~~~~~v~~d~~p~~~~ 522 (646)
T 2zws_A 457 --------------AQEYEGGSTLYGPWTQAAYQQLFVDMAVALRERLPVETSAIAPDLSCCQMNFQTGVVADDPYIGKS 522 (646)
T ss_dssp --------------HCCTTTTSCTTCTTHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCGGGCCBCCCCCCCCCCCTTCC
T ss_pred --------------cCCccceeeecCCChHHHHHHHHHHHHHHHhcCCCCCCCCCCccccccccccCCCCccCCCCCCCC
Confidence 9999999999999999999999999999997
Q ss_pred ----------------------hhcCCCCCccCCCceEEEEeeCCCCCCCCCeE--EEeeCCCCCCC
Q psy10777 204 ----------------------IAGHPRNNLFHEKSYLTVERLTPSESGNSTWK--IVATDANWDTK 246 (246)
Q Consensus 204 ----------------------~~~~PrNnl~~e~tfl~Ver~~~~~~~~~~W~--~v~~D~dw~t~ 246 (246)
++||||||||+|+||++|||+..+ ++|+ +|+||+||+|+
T Consensus 523 fg~v~~~~~~~y~~g~~v~~~f~~~~p~n~~~~~~t~~~ve~~~~~----~~w~~~~v~~D~d~~t~ 585 (646)
T 2zws_A 523 FGDVLQQPRESYRIGDKVTVAFVTGHPKNDLRTEKTFLEVVNIGKD----GKQTPVTVATDNDWDTQ 585 (646)
T ss_dssp TTCEEECCCSEEETTCEEEEEEECCCGGGCCCTTSCSEEEEEEESS----SCCCCEEEEETTSTTEE
T ss_pred CCcEeecCcccccCCCEEEEEEEccCCCcccccCCceEEEEEecCC----CceEEEEEecCCCccEE
Confidence 899999999999999999996655 8999 99999999985
No 2
>3zxn_A RSBS, anti-sigma-factor antagonist (STAS) domain protei; transcription, gene regulation; 1.90A {Moorella thermoacetica} PDB: 2vy9_A 3ztb_A*
Probab=77.02 E-value=4.1 Score=31.26 Aligned_cols=48 Identities=6% Similarity=0.193 Sum_probs=35.9
Q ss_pred EeEEEEecEEEEeeCCchhhhhHHHHHHHHHHHhccCCCCcEEEEcccc
Q psy10777 73 TQLVRIGHLVLVGVPGELTTMAGRRLRRALQDELGLLMESDVIIAGLAN 121 (246)
Q Consensus 73 vQilRIG~L~Iv~vPgEfTTmAGrRLR~av~~~~~~~~~~~VvVaGlAN 121 (246)
+.++++|+..++++.||+-.....++++.+.+....... +.+|.=+++
T Consensus 5 ~pii~~~~vlvv~l~G~lD~~~a~~l~~~ll~~i~~~~~-~~vIlDlsg 52 (123)
T 3zxn_A 5 VPILKVDDYWVVAIEETLHDQSVIQFKEELLHNITGVAG-KGLVIDISA 52 (123)
T ss_dssp SCEEEETTEEEEECCCCC-CHHHHHHHHHHHHHHTSSCC-SEEEEECTT
T ss_pred ccEEEECCEEEEEEeEeeCHHHHHHHHHHHHHHHHhcCC-CEEEEEcCC
Confidence 457899999999999999999999999998877543333 445555554
No 3
>1th8_B Anti-sigma F factor antagonist; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: c.13.2.1 PDB: 1thn_B* 1tid_B* 1til_B* 1auz_A 1buz_A
Probab=52.16 E-value=33 Score=24.39 Aligned_cols=37 Identities=24% Similarity=0.387 Sum_probs=31.1
Q ss_pred eEEeEEEEecEEEEeeCCchhhhhHHHHHHHHHHHhc
Q psy10777 71 VSTQLVRIGHLVLVGVPGELTTMAGRRLRRALQDELG 107 (246)
Q Consensus 71 lpvQilRIG~L~Iv~vPgEfTTmAGrRLR~av~~~~~ 107 (246)
+.+.+-+.++..++.++|+++......+++.+.+.+.
T Consensus 3 m~~~~~~~~~~~vv~l~G~l~~~~~~~l~~~l~~~~~ 39 (116)
T 1th8_B 3 LAIDLEVKQDVLIVRLSGELDHHTAEELREQVTDVLE 39 (116)
T ss_dssp EEEEEEEETTEEEEEEEEEESHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEECCEEEEEEeeeeccccHHHHHHHHHHHHh
Confidence 4566778899999999999999888899998887653
No 4
>3t6o_A Sulfate transporter/antisigma-factor antagonist S; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.10A {Planctomyces limnophilus}
Probab=48.34 E-value=38 Score=24.94 Aligned_cols=48 Identities=4% Similarity=0.150 Sum_probs=33.4
Q ss_pred EeEEEEecEEEEeeCCch---hhhhHHHHHHHHHHHhccCCCCcEEEEcccc
Q psy10777 73 TQLVRIGHLVLVGVPGEL---TTMAGRRLRRALQDELGLLMESDVIIAGLAN 121 (246)
Q Consensus 73 vQilRIG~L~Iv~vPgEf---TTmAGrRLR~av~~~~~~~~~~~VvVaGlAN 121 (246)
+.+-+.|+..++.+.||+ .......+|+++.+.+...+ ...+|.=+++
T Consensus 7 i~~~~~~~~~vv~l~G~l~~ld~~~~~~l~~~l~~~l~~~~-~~~vvlDls~ 57 (121)
T 3t6o_A 7 IRVTHEAQVTVISFPAVFQRLRETEVEQIASTFLAAMQGAQ-PRKVLIDLEG 57 (121)
T ss_dssp CEEEEETTEEEEECCGGGSEECHHHHHHHHHHHHHTTCCSS-SCEEEEECTT
T ss_pred eeEEEECCEEEEEEccccccCchhhHHHHHHHHHHHHhhcC-CCeEEEECCC
Confidence 456688999999999998 55567788888876653222 3445555554
No 5
>4hyl_A Stage II sporulation protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 1.75A {Haliangium ochraceum}
Probab=42.51 E-value=30 Score=25.04 Aligned_cols=49 Identities=16% Similarity=0.205 Sum_probs=36.9
Q ss_pred eeEEeEEEEecEEEEeeCCchhhhhHHHHHHHHHHHhccCCCCcEEEEcccc
Q psy10777 70 TVSTQLVRIGHLVLVGVPGELTTMAGRRLRRALQDELGLLMESDVIIAGLAN 121 (246)
Q Consensus 70 ilpvQilRIG~L~Iv~vPgEfTTmAGrRLR~av~~~~~~~~~~~VvVaGlAN 121 (246)
...+.+-+.|+..++.+.||++......+++.+.+.+... + .+|.=+++
T Consensus 3 ~M~i~~~~~~~~~v~~l~G~ld~~~~~~l~~~l~~~~~~~--~-~vvlDls~ 51 (117)
T 4hyl_A 3 ATDTQIRTEQGIDIITLHGHLDTRSSPAVQAAVLPRVTAK--G-KMILDLRE 51 (117)
T ss_dssp CCEEEEEEETTEEEEEEEEEECSSSHHHHHHHHGGGCCTT--C-EEEEEEEE
T ss_pred ccEEEEEEECCEEEEEEEeEEcchhHHHHHHHHHHHHccC--C-eEEEECCC
Confidence 3567778899999999999999999999999987765322 2 44544444
No 6
>1h4x_A SPOIIAA, anti-sigma F factor antagonist; cell differentiation, crystallography, phosphorylation, sigma factor, sporulation; HET: SEP; 1.16A {Bacillus sphaericus} SCOP: c.13.2.1 PDB: 1h4z_A 1h4y_A
Probab=42.36 E-value=37 Score=24.37 Aligned_cols=34 Identities=24% Similarity=0.289 Sum_probs=28.5
Q ss_pred EeEE-EEecEEEEeeCCchhhhhHHHHHHHHHHHh
Q psy10777 73 TQLV-RIGHLVLVGVPGELTTMAGRRLRRALQDEL 106 (246)
Q Consensus 73 vQil-RIG~L~Iv~vPgEfTTmAGrRLR~av~~~~ 106 (246)
+.+- +.++..++.+.||++...-..+++.+.+.+
T Consensus 3 ~~~~~~~~~~~vl~l~G~l~~~~~~~l~~~l~~~~ 37 (117)
T 1h4x_A 3 FQLEMVTRETVVIRLFGELDHHAVEQIRAKISTAI 37 (117)
T ss_dssp EEEEEEETTEEEEEEEEEECHHHHHHHHHHHHHHH
T ss_pred ceEEEeeCCEEEEEEEeEEchhhHHHHHHHHHHHH
Confidence 4455 789999999999999988888998887765
No 7
>1sbo_A Putative anti-sigma factor antagonist TM1442; open sandwich, JCSG, structural genomics, joint center for structural genomics, PSI; NMR {Thermotoga maritima} SCOP: c.13.2.1 PDB: 1t6r_A* 1vc1_A
Probab=39.31 E-value=22 Score=25.01 Aligned_cols=49 Identities=16% Similarity=0.307 Sum_probs=34.4
Q ss_pred EEeEEEEecEEEEeeCCchhhhhHHHHHHHHHHHhccCCCCcEEEEcccc
Q psy10777 72 STQLVRIGHLVLVGVPGELTTMAGRRLRRALQDELGLLMESDVIIAGLAN 121 (246)
Q Consensus 72 pvQilRIG~L~Iv~vPgEfTTmAGrRLR~av~~~~~~~~~~~VvVaGlAN 121 (246)
.+.+-+.++..++.+.||++......+++.+.+.+...+ ...+|.=+++
T Consensus 5 ~i~~~~~~~~~vv~l~G~l~~~~~~~l~~~l~~~~~~~~-~~~vvlDls~ 53 (110)
T 1sbo_A 5 KLDIVEQDDKAIVRVQGDIDAYNSSELKEQLRNFISTTS-KKKIVLDLSS 53 (110)
T ss_dssp EECCEECSSEEEEEEESCBSTTTTTHHHHHHHTHHHHCS-CSEEEEECTT
T ss_pred EEEEEEeCCEEEEEEeeEEccccHHHHHHHHHHHHhcCC-CcEEEEECCC
Confidence 455667889999999999998888889988877643221 1344555544
No 8
>2pz0_A Glycerophosphoryl diester phosphodiesterase; glycerophosphodiester phosphodiesterase, T. tengcongensis; 1.91A {Thermoanaerobacter tengcongensis}
Probab=22.54 E-value=1.2e+02 Score=25.31 Aligned_cols=25 Identities=12% Similarity=0.072 Sum_probs=19.6
Q ss_pred eeeecccccccCCccHHHHHHHHHH
Q psy10777 173 IQRYEGASTIYGPHTLTIYISQYLK 197 (246)
Q Consensus 173 ~q~yeg~sT~~gp~tl~ay~~~~~~ 197 (246)
+---.|+|..|+-+|+.|+...+..
T Consensus 14 iiaHRG~~~~~PENTl~Af~~A~~~ 38 (252)
T 2pz0_A 14 VIAHRGDSKNVPENTIAAFKRAMEL 38 (252)
T ss_dssp EEEETTTTTTSCTTSHHHHHHHHHH
T ss_pred EEEcCCCCCCCCcchHHHHHHHHHc
Confidence 3344599999999999999876543
No 9
>2kln_A Probable sulphate-transport transmembrane protein; SLC26, sulfate, antisigma factor antagonist, ensemble structures, transport protein; NMR {Mycobacterium bovis}
Probab=17.27 E-value=1.8e+02 Score=21.43 Aligned_cols=44 Identities=11% Similarity=0.079 Sum_probs=32.0
Q ss_pred EecEEEEeeCCchhhhhHHHHHHHHHHHhccCC-CCcEEEEcccc
Q psy10777 78 IGHLVLVGVPGELTTMAGRRLRRALQDELGLLM-ESDVIIAGLAN 121 (246)
Q Consensus 78 IG~L~Iv~vPgEfTTmAGrRLR~av~~~~~~~~-~~~VvVaGlAN 121 (246)
+++..|+-+.|++.-.+..++++++.+.....+ ....+|.=+++
T Consensus 13 ~~~v~v~~l~G~L~f~~a~~~~~~l~~~~~~~~~~~~~vvlDls~ 57 (130)
T 2kln_A 13 VPGLVVYRYDAPLCFANAEDFRRRALTVVDQDPGQVEWFVLNAES 57 (130)
T ss_dssp SSSEEEEECCSCCBTTTHHHHHHHHHHHTTSSSSCCEEEEEECSC
T ss_pred CCCEEEEEECCceEechHHHHHHHHHHHHhcCCCCceEEEEECCC
Confidence 457788899999999999999999988754221 34556666654
No 10
>2hz5_A Dynein light chain 2A, cytoplasmic; DNLC2A, transport protein; 2.10A {Homo sapiens} SCOP: d.110.7.1 PDB: 2b95_A
Probab=14.54 E-value=2.6e+02 Score=21.50 Aligned_cols=33 Identities=15% Similarity=0.347 Sum_probs=26.0
Q ss_pred cHHHHHHHHHHHHHHhhhhcCCCCCccCCCceEEEEe
Q psy10777 187 TLTIYISQYLKMAQHLAIAGHPRNNLFHEKSYLTVER 223 (246)
Q Consensus 187 tl~ay~~~~~~la~~l~~~~~PrNnl~~e~tfl~Ver 223 (246)
..++.++.+.+.|+.+...-+|.|+| +||.|--
T Consensus 51 ~yA~li~~L~~~A~~~vr~lDp~deL----~fLRiRT 83 (106)
T 2hz5_A 51 QYASLMHSFILKARSTVRDIDPQNDL----TFLRIRS 83 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCCE----EEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHccCCCCCe----EEEEEEe
Confidence 44667788888888888888999988 6888743
Done!