Query psy10777
Match_columns 246
No_of_seqs 138 out of 321
Neff 3.7
Searched_HMMs 13730
Date Fri Aug 16 18:14:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10777.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/10777hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1vc1a_ c.13.2.1 (A:) Anti-sig 75.0 2.6 0.00019 29.1 5.3 46 71-116 4-49 (110)
2 d1th8b_ c.13.2.1 (B:) Anti-sig 61.2 8.6 0.00063 26.3 5.7 45 71-115 2-46 (115)
3 d2gqea1 g.41.11.1 (A:3-31) Nuc 21.7 9.1 0.00066 22.4 0.0 9 44-52 21-29 (29)
4 d1pjqa3 e.37.1.1 (A:114-215) S 20.1 67 0.0049 22.3 4.6 33 74-106 2-34 (102)
5 d1kyqa2 e.37.1.1 (A:151-273) B 17.8 70 0.0051 23.5 4.4 33 74-106 2-35 (123)
6 d1h4xa_ c.13.2.1 (A:) Anti-sig 15.8 64 0.0047 21.6 3.5 36 80-115 10-45 (111)
7 d2hz5a1 d.110.7.1 (A:5-94) Dyn 14.7 1.3E+02 0.0091 20.8 4.9 33 187-223 37-69 (90)
8 d3ecga1 b.50.1.1 (A:1-99) Huma 14.0 23 0.0017 26.0 0.7 21 50-70 19-46 (99)
9 d7reqa2 c.23.6.1 (A:561-728) M 12.8 2.5E+02 0.018 20.9 6.7 16 173-188 135-150 (168)
10 d2gxfa1 d.17.4.22 (A:1-128) Hy 12.7 65 0.0047 21.7 2.8 23 215-241 99-121 (128)
No 1
>d1vc1a_ c.13.2.1 (A:) Anti-sigma factor antagonist SpoIIaa {Thermotoga maritima [TaxId: 2336]}
Probab=74.97 E-value=2.6 Score=29.08 Aligned_cols=46 Identities=13% Similarity=0.339 Sum_probs=37.6
Q ss_pred eEEeEEEEecEEEEeeCCchhhhhHHHHHHHHHHHhccCCCCcEEE
Q psy10777 71 VSTQLVRIGHLVLVGVPGELTTMAGRRLRRALQDELGLLMESDVII 116 (246)
Q Consensus 71 lpvQilRIG~L~Iv~vPgEfTTmAGrRLR~av~~~~~~~~~~~VvV 116 (246)
+.+.+..-.+..|+.+.||++...-.++++.+.+.....+.+.|+|
T Consensus 4 ~~~~~~~~~~~~vv~l~G~l~~~~~~~~~~~l~~~~~~~~~~~vvi 49 (110)
T d1vc1a_ 4 LKLDIVEQDDKAIVRVQGDIDAYNSSELKEQLRNFISTTSKKKIVL 49 (110)
T ss_dssp CEEEEEEETTEEEEEEESCBSTTTHHHHHHHHHHHHHHCCCSEEEE
T ss_pred cEEEEEEECCEEEEEEEEEEEhHHHHHHHHHHHHHHhcCCCCEEEE
Confidence 4678888999999999999999999999999988754444455554
No 2
>d1th8b_ c.13.2.1 (B:) Anti-sigma factor antagonist SpoIIaa {Bacillus stearothermophilus [TaxId: 1422]}
Probab=61.21 E-value=8.6 Score=26.33 Aligned_cols=45 Identities=20% Similarity=0.302 Sum_probs=35.6
Q ss_pred eEEeEEEEecEEEEeeCCchhhhhHHHHHHHHHHHhccCCCCcEE
Q psy10777 71 VSTQLVRIGHLVLVGVPGELTTMAGRRLRRALQDELGLLMESDVI 115 (246)
Q Consensus 71 lpvQilRIG~L~Iv~vPgEfTTmAGrRLR~av~~~~~~~~~~~Vv 115 (246)
+.+++-.-++..++.+.|++.......+++.+.+.+...+.+.++
T Consensus 2 l~i~~~~~~~v~vv~l~G~L~~~~~~~~~~~l~~~~~~~~~~~ii 46 (115)
T d1th8b_ 2 LAIDLEVKQDVLIVRLSGELDHHTAEELREQVTDVLENRAIRHIV 46 (115)
T ss_dssp EEEEEEEETTEEEEEEEEEESHHHHHHHHHHHHHHHHSSCCCEEE
T ss_pred ceEEEEEECCEEEEEEEEEEEHHHHHHHHHHHHHHHhcCCCCEEE
Confidence 467777889999999999999999999999998875433334443
No 3
>d2gqea1 g.41.11.1 (A:3-31) Nuclear pore complex protein nup153 {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.75 E-value=9.1 Score=22.41 Aligned_cols=9 Identities=56% Similarity=1.320 Sum_probs=7.4
Q ss_pred hhhhcCCCc
Q psy10777 44 LIACQKPKP 52 (246)
Q Consensus 44 ~~~Cq~pKp 52 (246)
=++||.|||
T Consensus 21 CvAC~tpkP 29 (29)
T d2gqea1 21 CVACETPKP 29 (29)
T ss_dssp CSSSCCBCC
T ss_pred EeecCCCCC
Confidence 457999998
No 4
>d1pjqa3 e.37.1.1 (A:114-215) Siroheme synthase CysG, domains 2 and 3 {Salmonella typhimurium [TaxId: 90371]}
Probab=20.11 E-value=67 Score=22.27 Aligned_cols=33 Identities=21% Similarity=0.324 Sum_probs=27.6
Q ss_pred eEEEEecEEEEeeCCchhhhhHHHHHHHHHHHh
Q psy10777 74 QLVRIGHLVLVGVPGELTTMAGRRLRRALQDEL 106 (246)
Q Consensus 74 QilRIG~L~Iv~vPgEfTTmAGrRLR~av~~~~ 106 (246)
.+++-|++.|...-|=..-...|+||+.+.+.+
T Consensus 2 Aiv~rg~l~iAISTgG~sP~lar~lR~~lE~~l 34 (102)
T d1pjqa3 2 SIIDRSPLMVAVSSGGTSPVLARLLREKLESLL 34 (102)
T ss_dssp EEEEETTEEEEEECTTSCHHHHHHHHHHHHHHS
T ss_pred CeeecCCeEEEEeCCCcChHHHHHHHHHHHHhC
Confidence 478999999988877777788999999887664
No 5
>d1kyqa2 e.37.1.1 (A:151-273) Bifunctional dehydrogenase/ferrochelatase Met8p, dimerisation and C-terminal domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=17.79 E-value=70 Score=23.50 Aligned_cols=33 Identities=18% Similarity=0.290 Sum_probs=23.3
Q ss_pred eEEEEec-EEEEeeCCchhhhhHHHHHHHHHHHh
Q psy10777 74 QLVRIGH-LVLVGVPGELTTMAGRRLRRALQDEL 106 (246)
Q Consensus 74 QilRIG~-L~Iv~vPgEfTTmAGrRLR~av~~~~ 106 (246)
..++.|| |.|...-+=-.-...++||+.+.+.+
T Consensus 2 a~~~~GDpLqIaIST~G~sP~LA~~iR~~Ie~~l 35 (123)
T d1kyqa2 2 ANLEIGDRLQILISTNGLSPRFGALVRDEIRNLF 35 (123)
T ss_dssp EEEEETTTEEEEEEESSSCHHHHHHHHHHHHHHH
T ss_pred CccccCCCeEEEeeCCCccHHHHHHHHHHHHHHC
Confidence 3678898 88855544444556888999887765
No 6
>d1h4xa_ c.13.2.1 (A:) Anti-sigma factor antagonist SpoIIaa {Bacillus sphaericus [TaxId: 1421]}
Probab=15.82 E-value=64 Score=21.60 Aligned_cols=36 Identities=19% Similarity=0.234 Sum_probs=26.4
Q ss_pred cEEEEeeCCchhhhhHHHHHHHHHHHhccCCCCcEE
Q psy10777 80 HLVLVGVPGELTTMAGRRLRRALQDELGLLMESDVI 115 (246)
Q Consensus 80 ~L~Iv~vPgEfTTmAGrRLR~av~~~~~~~~~~~Vv 115 (246)
+..++-+-|+++..+..++++.+.+.+.....+.|+
T Consensus 10 ~~~vv~~~G~L~~~~a~~~~~~~~~~i~~~~~~~vv 45 (111)
T d1h4xa_ 10 ETVVIRLFGELDHHAVEQIRAKISTAIFQGAVTTII 45 (111)
T ss_dssp TEEEEEEEEEECHHHHHHHHHHHHHHHHHTSCSEEE
T ss_pred CEEEEEEEEEEEHHHHHHHHHHHHHHHhcCCCcEEE
Confidence 467788889999999999999987765433333443
No 7
>d2hz5a1 d.110.7.1 (A:5-94) Dynein light chain 2A, cytoplasmic {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.74 E-value=1.3e+02 Score=20.77 Aligned_cols=33 Identities=15% Similarity=0.347 Sum_probs=26.0
Q ss_pred cHHHHHHHHHHHHHHhhhhcCCCCCccCCCceEEEEe
Q psy10777 187 TLTIYISQYLKMAQHLAIAGHPRNNLFHEKSYLTVER 223 (246)
Q Consensus 187 tl~ay~~~~~~la~~l~~~~~PrNnl~~e~tfl~Ver 223 (246)
..++.++.+.++|+++...-+|.|+| +|+.|--
T Consensus 37 ~yA~~~~~l~~~A~~~vrdlDp~del----~flRlRT 69 (90)
T d2hz5a1 37 QYASLMHSFILKARSTVRDIDPQNDL----TFLRIRS 69 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCCE----EEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCcE----EEEEEec
Confidence 45666778888898888888999988 5777743
No 8
>d3ecga1 b.50.1.1 (A:1-99) Human immunodeficiency virus type 2 (HIV-2) protease {Human immunodeficiency virus type 2 [TaxId: 11709]}
Probab=14.04 E-value=23 Score=25.96 Aligned_cols=21 Identities=29% Similarity=0.611 Sum_probs=17.2
Q ss_pred CCceeeecC-------CCCCCCCCCCce
Q psy10777 50 PKPILLATG-------LMNVPHQWQPNT 70 (246)
Q Consensus 50 pKpiLl~tG-------~~~~p~~w~p~i 70 (246)
.|-.||+|| +|+.|..|.|.+
T Consensus 19 ~~eaLLDTGADdTVle~i~lpg~WkPk~ 46 (99)
T d3ecga1 19 PVEVLLDTGADDSIVAGIELGNNYSPKI 46 (99)
T ss_dssp EEEEEECTTCSSCEECSCCCCSCCEEEE
T ss_pred EeeeecccCCCceeeeccCCCCCCcceE
Confidence 456799999 489999998875
No 9
>d7reqa2 c.23.6.1 (A:561-728) Methylmalonyl-CoA mutase alpha subunit, C-terminal domain {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]}
Probab=12.77 E-value=2.5e+02 Score=20.93 Aligned_cols=16 Identities=44% Similarity=0.628 Sum_probs=12.0
Q ss_pred eeeecccccccCCccH
Q psy10777 173 IQRYEGASTIYGPHTL 188 (246)
Q Consensus 173 ~q~yeg~sT~~gp~tl 188 (246)
.-+-.|.+-+|||.|-
T Consensus 135 ~l~~~Gv~~iF~pgt~ 150 (168)
T d7reqa2 135 ELRKDGAVEIYTPGTV 150 (168)
T ss_dssp HHHHHTEEEEECTTCC
T ss_pred HHHhCCCCEEECcCCC
Confidence 3445688889999985
No 10
>d2gxfa1 d.17.4.22 (A:1-128) Hypothetical protein YybH {Bacillus subtilis [TaxId: 1423]}
Probab=12.68 E-value=65 Score=21.68 Aligned_cols=23 Identities=17% Similarity=0.277 Sum_probs=17.1
Q ss_pred CCceEEEEeeCCCCCCCCCeEEEeeCC
Q psy10777 215 EKSYLTVERLTPSESGNSTWKIVATDA 241 (246)
Q Consensus 215 e~tfl~Ver~~~~~~~~~~W~~v~~D~ 241 (246)
++.+..|=+++.+ |+|+.+.|+.
T Consensus 99 ~~~~t~v~~r~~d----G~Wki~~D~~ 121 (128)
T d2gxfa1 99 ERRATYVFKKNAQ----GEWLCVIDNS 121 (128)
T ss_dssp EEEEEEEEEECTT----SCEEEEEEET
T ss_pred eEEEEEEEEECCC----CcEEEEEECC
Confidence 3577888776655 8999998864
Done!