RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10777
(246 letters)
>gnl|CDD|218235 pfam04734, Ceramidase_alk, Neutral/alkaline non-lysosomal
ceramidase. This family represents a group of
neutral/alkaline ceramidases found in both bacteria and
eukaryotes.
Length = 672
Score = 262 bits (672), Expect = 1e-83
Identities = 105/205 (51%), Positives = 123/205 (60%), Gaps = 40/205 (19%)
Query: 1 MGYSFAAGTTDGPGAFTFKQGTTNP-DNPLWNVVTNILATPTSDLIACQKPKPILLATGL 59
+GYSFAAGTTDGPGAF F QG T NPLW+ V ++LA PT + ACQ PKPILL TG
Sbjct: 353 LGYSFAAGTTDGPGAFDFTQGDTGATGNPLWDAVRDLLAVPTQEQKACQAPKPILLDTGE 412
Query: 60 MNVPHQWQPNTVSTQLVRIGHLVLVGVPGELTTMAGRRLRRALQDELGL-LMESDVIIAG 118
M P+ W PN V QL+RIG L +V VPGE TTMAGRRLR A+ LG ++ V+IAG
Sbjct: 413 MTFPYPWVPNIVPVQLLRIGQLAIVAVPGEFTTMAGRRLREAVAAALGAAGIKPHVVIAG 472
Query: 119 LANTYADYVTTPEEYQIRRCLYHLRTSYPYHLHQSVAHPFLAYWSNYINSFGFQIQRYEG 178
LAN YA YVTTPEEY IQRYEG
Sbjct: 473 LANAYAHYVTTPEEY--------------------------------------AIQRYEG 494
Query: 179 ASTIYGPHTLTIYISQYLKMAQHLA 203
AST++GPHTL YI ++L++A LA
Sbjct: 495 ASTLFGPHTLAAYIQEFLRLAPALA 519
Score = 64.2 bits (157), Expect = 8e-12
Identities = 20/43 (46%), Positives = 27/43 (62%), Gaps = 4/43 (9%)
Query: 204 IAGHPRNNLFHEKSYLTVERLTPSESGNSTWKIVATDANWDTK 246
+ +PRNNL E ++L VERL TW VATDA+W+T+
Sbjct: 577 VGANPRNNLRTEGTFLAVERLEA----GGTWVTVATDADWETR 615
>gnl|CDD|240437 PTZ00487, PTZ00487, ceramidase; Provisional.
Length = 715
Score = 187 bits (476), Expect = 4e-55
Identities = 91/205 (44%), Positives = 121/205 (59%), Gaps = 41/205 (20%)
Query: 1 MGYSFAAGTTDGPGAFTFKQGTTN-PDNPLWNVVTNILATPTSDLIACQKPKPILLATGL 59
MGYSFAAGTTDGPGAF FKQG + NP WN + + +A PT + I CQ PKPILL G+
Sbjct: 394 MGYSFAAGTTDGPGAFNFKQGDNSTKGNPFWNFIGSFIAKPTPEQILCQSPKPILLDVGM 453
Query: 60 MNVPHQWQPNTVSTQLVRIGHLVLVGVPGELTTMAGRRLRRALQDELGLLMESD-VIIAG 118
+ P W P+ + Q++ IG +VLV VPGE TTM+GRRLR +++ +G +E+ V+IAG
Sbjct: 454 VE-PIPWVPDVMPIQIMTIGQIVLVAVPGEFTTMSGRRLRNTVREIIGTSIENPIVLIAG 512
Query: 119 LANTYADYVTTPEEYQIRRCLYHLRTSYPYHLHQSVAHPFLAYWSNYINSFGFQIQRYEG 178
L+NTY+ Y+ T EE FQ+QRYEG
Sbjct: 513 LSNTYSGYIATFEE--------------------------------------FQVQRYEG 534
Query: 179 ASTIYGPHTLTIYISQYLKMAQHLA 203
AST++GPHTL Y ++ K+AQ +
Sbjct: 535 ASTVFGPHTLGAYQQEFDKLAQSIV 559
>gnl|CDD|226947 COG4581, COG4581, Superfamily II RNA helicase [DNA replication,
recombination, and repair].
Length = 1041
Score = 32.0 bits (73), Expect = 0.28
Identities = 30/89 (33%), Positives = 41/89 (46%), Gaps = 22/89 (24%)
Query: 53 ILLAT-----GLMNVPHQWQPNTVSTQLVRI---GHLVLVGVPGELTTMAGRRLRRALQD 104
++ AT G+ N+P + V T L + GH L PGE T M+GR RR L D
Sbjct: 473 VVFATETFAIGI-NMPAR---TVVFTSLSKFDGNGHRWLS--PGEYTQMSGRAGRRGL-D 525
Query: 105 ELG--LLMESDVII-----AGLANTYADY 126
LG +++E AGLA+ D
Sbjct: 526 VLGTVIVIEPPFESEPSEAAGLASGKLDP 554
>gnl|CDD|220332 pfam09661, DUF2398, Protein of unknown function (DUF2398).
Proteins in this entry are encoded within a conserved
gene four-gene neighborhood found sporadically in a
phylogenetically broad range of bacteria including:
Nocardia farcinica, Symbiobacterium thermophilum, and
Streptomyces avermitilis (Actinobacteria), Geobacillus
kaustophilus (Firmicutes), Azoarcus sp. EbN1 and
Ralstonia solanacearum (Betaproteobacteria).
Length = 368
Score = 31.9 bits (73), Expect = 0.29
Identities = 16/64 (25%), Positives = 24/64 (37%), Gaps = 4/64 (6%)
Query: 92 TMAGRRLRRALQDELGLLMESDVI--IAGLANTYADYVTTPEEYQI-RRCLYHLRTSYPY 148
R RRAL L L+E V+ + G +A Y++ R Y L ++P
Sbjct: 113 DWTRRSERRALVRALRFLVELGVLREVDGDEEGFARDQDGEVLYEVTRLSRYFLL-AFPR 171
Query: 149 HLHQ 152
Sbjct: 172 DPST 175
>gnl|CDD|135648 PRK05898, dnaE, DNA polymerase III DnaE; Validated.
Length = 971
Score = 29.8 bits (67), Expect = 1.6
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 8/74 (10%)
Query: 99 RRAL--QDELGLLMESDVIIAG-LANTYADYVTTPEEYQIRRCLYHLRTSYPYHLHQSVA 155
RRA+ +DE L+ I G L N Y P QI ++ Y ++ S+A
Sbjct: 627 RRAISKKDEKILIQLKKDFIEGALKNNY----KQPLVNQIFEYIFSF-ADYGFNHSHSLA 681
Query: 156 HPFLAYWSNYINSF 169
+ +++YW Y+ +
Sbjct: 682 YSYISYWMAYLKHY 695
>gnl|CDD|215154 PLN02274, PLN02274, inosine-5'-monophosphate dehydrogenase.
Length = 505
Score = 28.9 bits (65), Expect = 3.1
Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
Query: 1 MGYSFAAGTTDGPGAFTFKQG 21
MG SF AGTT+ PG + ++ G
Sbjct: 379 MG-SFLAGTTEAPGEYFYQDG 398
>gnl|CDD|221596 pfam12481, DUF3700, Aluminium induced protein. This domain
family is found in eukaryotes, and is approximately 120
amino acids in length. There are two conserved sequence
motifs: YGL and LRDR. This family is related to GATase
enzyme domains.
Length = 228
Score = 27.9 bits (63), Expect = 4.6
Identities = 12/45 (26%), Positives = 15/45 (33%), Gaps = 3/45 (6%)
Query: 37 LATPTSDLIACQKPKPILLATGLMNVPHQWQPNTVSTQLVRIGHL 81
L +P S L + K K L+ PN VS L
Sbjct: 15 LNSPASRLPSSAKKK---GPEELLKDFVSANPNAVSVNFGDSAFL 56
>gnl|CDD|198111 smart01043, BTAD, Bacterial transcriptional activator domain.
Found in the DNRI/REDD/AFSR family of regulators. This
region of AFSR along with the C terminal region is
capable of independently directing actinorhodin
production. This family contains TPR repeats.
Length = 145
Score = 26.9 bits (60), Expect = 6.4
Identities = 10/13 (76%), Positives = 11/13 (84%)
Query: 96 RRLRRALQDELGL 108
RRLRR L DELG+
Sbjct: 119 RRLRRLLADELGV 131
>gnl|CDD|235310 PRK04750, ubiB, putative ubiquinone biosynthesis protein UbiB;
Reviewed.
Length = 537
Score = 27.2 bits (61), Expect = 8.5
Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Query: 68 PNTVSTQLVRIGHLVLVGVPGE-LTTMAGRRLRRALQDELG 107
+ T+ +R+ L +P G RLR AL+ ELG
Sbjct: 24 LSHRLTRPLRLWRRSLFWMPNRHKDKPRGERLRLALE-ELG 63
>gnl|CDD|227017 COG4671, COG4671, Predicted glycosyl transferase [General function
prediction only].
Length = 400
Score = 27.3 bits (61), Expect = 8.6
Identities = 10/49 (20%), Positives = 20/49 (40%), Gaps = 4/49 (8%)
Query: 40 PTSDLIACQKPKPILLATGLMNVPHQ----WQPNTVSTQLVRIGHLVLV 84
PT + + + +L + ++P + W+ + R LVLV
Sbjct: 125 PTLEYLKTTGTRLVLGLRSIRDIPQELEADWRRAETVRLINRFYDLVLV 173
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.134 0.417
Gapped
Lambda K H
0.267 0.0733 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 12,861,445
Number of extensions: 1208776
Number of successful extensions: 1039
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1032
Number of HSP's successfully gapped: 15
Length of query: 246
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 152
Effective length of database: 6,768,326
Effective search space: 1028785552
Effective search space used: 1028785552
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.1 bits)