RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10777
(246 letters)
>2zws_A Neutral ceramidase; prism fold and beta-sandwich fold, hydrolase,
lipid metaboli secreted; HET: PLM; 1.40A {Pseudomonas
aeruginosa} PDB: 2zxc_A*
Length = 646
Score = 149 bits (376), Expect = 1e-41
Identities = 85/267 (31%), Positives = 115/267 (43%), Gaps = 28/267 (10%)
Query: 1 MGYSFAAGTT-DGPGAFTFKQGTTNPDNPLWNVVTNIL-ATPTSDLIACQKPKPILLATG 58
+G S AAG+T DGPG ++G +NP + + +L P +L+ CQ K IL TG
Sbjct: 326 IGTSLAAGSTEDGPGPLGLEEG----NNPFLSALGGLLTGVPPQELVQCQAEKTILADTG 381
Query: 59 LMNVPHQWQPNTVSTQLVRIGHLVLVGVPGELTTMAGRRLRRALQDELGLLMESDVIIAG 118
P+ W P + Q+ RIG L L+G P E T MAG R+RRA+Q V+ G
Sbjct: 382 NKK-PYPWTPTVLPIQMFRIGQLELLGAPAEFTVMAGVRIRRAVQAASEAAGIRHVVFNG 440
Query: 119 LANTYADYVTTPEE-----YQIRRCLYHLRTSYPYHLHQSVAHPFLAYWSNYINSFGFQI 173
AN YA YVTT EE Y+ LY T Y L S
Sbjct: 441 YANAYASYVTTREEYAAQEYEGGSTLYGPWTQAAYQQLFVDMAVALRERLPVETSAIAPD 500
Query: 174 QRYEGASTIYGPHTLTIYISQY----LKMAQHLA----------IAGHPRNNLFHEKSYL 219
+ G YI + L+ + + GHP+N+L EK++L
Sbjct: 501 LSCCQMNFQTGVVADDPYIGKSFGDVLQQPRESYRIGDKVTVAFVTGHPKNDLRTEKTFL 560
Query: 220 TVERLTPSESGNSTWKIVATDANWDTK 246
V + G T VATD +WDT+
Sbjct: 561 EVVNIGK--DGKQTPVTVATDNDWDTQ 585
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 48.1 bits (114), Expect = 1e-06
Identities = 58/273 (21%), Positives = 90/273 (32%), Gaps = 80/273 (29%)
Query: 13 PGAF-TFKQGTTNPDNPLWNVVTNILATPTSD---LIACQKPKPILLATGL---MNVPHQ 65
PG ++ +G T L V +A S ++ +K +L G+ P+
Sbjct: 260 PGELRSYLKGATGHSQGL--VTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNT 317
Query: 66 WQPNTVSTQLVRIGHLVLVGVPGELTTMAG-RRLRRA-LQDELG-----LLMESDVIIAG 118
P ++ + GVP + M L + +QD + L V I+
Sbjct: 318 SLPPSILEDSLENNE----GVP---SPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEIS- 369
Query: 119 LANTYADYVTT--PEEYQIRRCLYHLRTSY-----PYHLHQSVAHPFLAYWSNYINSFGF 171
L N + V + P+ LY L + P L QS PF S
Sbjct: 370 LVNGAKNLVVSGPPQS------LYGLNLTLRKAKAPSGLDQSRI-PF---------S--- 410
Query: 172 QIQRYEGASTIYGP-----HTLTIYISQYLKMAQHLAIAGHPRNNL-FHEKS-----YLT 220
+R S + P H S L A L +NN+ F+ K Y T
Sbjct: 411 --ERKLKFSNRFLPVASPFH------SHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDT 462
Query: 221 VE----RLTPSESGNSTWKIV---ATD-ANWDT 245
+ R SG+ + +IV W+T
Sbjct: 463 FDGSDLR---VLSGSISERIVDCIIRLPVKWET 492
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 35.2 bits (80), Expect = 0.017
Identities = 17/91 (18%), Positives = 36/91 (39%), Gaps = 7/91 (7%)
Query: 16 FTFKQGTTNPDNPLWNVVTNILATPTSDL------IACQKPKPILLATGLMNVPHQWQPN 69
F F + D+ WN +IL T L I PK L +++ + + N
Sbjct: 500 FRFLEQKIRHDSTAWNASGSILNT-LQQLKFYKPYICDNDPKYERLVNAILDFLPKIEEN 558
Query: 70 TVSTQLVRIGHLVLVGVPGELTTMAGRRLRR 100
+ ++ + + L+ + A ++++R
Sbjct: 559 LICSKYTDLLRIALMAEDEAIFEEAHKQVQR 589
Score = 35.2 bits (80), Expect = 0.018
Identities = 30/245 (12%), Positives = 60/245 (24%), Gaps = 77/245 (31%)
Query: 35 NILATPTSDL--IACQ-KPKPI-LLATGLMNVPHQWQPNTVSTQLVRIGHLVLVGV---- 86
L DL P+ + ++A + + W N ++ ++ +
Sbjct: 309 KYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWD-NWKHVNCDKLTTIIESSLNVLE 367
Query: 87 PGELTTMAGRRLRRALQDELGLLMESDVII--------------------------AGLA 120
P E R + D L + I L
Sbjct: 368 PAEY---------RKMFDRLSVFPP-SAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLV 417
Query: 121 N------TYADY-------VTTPEEYQI-RRCLYHLRTSYPYHLHQSVAHPFLAYWSNYI 166
T + V EY + R + H + + Y+ ++I
Sbjct: 418 EKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHI 477
Query: 167 NSFGF------QIQRYEGASTIYGPHTLTI-YISQYLKMAQHLAIAGHPRNNLFHE---- 215
G +R ++ L ++ Q ++ A N +
Sbjct: 478 ---GHHLKNIEHPERMTLFRMVF----LDFRFLEQKIRHDSTAWNASGSILNTLQQLKFY 530
Query: 216 KSYLT 220
K Y+
Sbjct: 531 KPYIC 535
Score = 31.7 bits (71), Expect = 0.25
Identities = 28/192 (14%), Positives = 53/192 (27%), Gaps = 62/192 (32%)
Query: 67 QPNTVSTQLVRIGHLVLVGVPGELTTMAGRRLRRALQDELGLLMES----DVIIAGLANT 122
+ VS L L+ M + + L+ LM + +
Sbjct: 57 SKDAVSGTLRLFWTLLSKQ-----EEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRM 111
Query: 123 YADY---------------VTTPEEY-QIRRCLYHLRTSYPYHLH-------QSVA---- 155
Y + V+ + Y ++R+ L LR + + VA
Sbjct: 112 YIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVC 171
Query: 156 --------HPFLAYWSNY------------INSFGFQI-----QRYEGASTI-YGPHTLT 189
F +W N + +QI R + +S I H++
Sbjct: 172 LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ 231
Query: 190 IYISQYLKMAQH 201
+ + LK +
Sbjct: 232 AELRRLLKSKPY 243
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold,
hydro; HET: ADP; 2.91A {Escherichia coli}
Length = 500
Score = 31.2 bits (71), Expect = 0.34
Identities = 10/44 (22%), Positives = 17/44 (38%), Gaps = 7/44 (15%)
Query: 79 GHLVLVGVPGELTTMAGRRLRRALQDELGL-------LMESDVI 115
+ L+G PG ++ RRL+ A Q+ +V
Sbjct: 42 ESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVF 85
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.3 bits (67), Expect = 0.36
Identities = 8/51 (15%), Positives = 17/51 (33%), Gaps = 24/51 (47%)
Query: 172 QIQRYEGASTIYGPHTLTIYISQYLKMAQHLAIAGHPRNNLFHEKSYLTVE 222
+++ + + +Y + A LAI K+ T+E
Sbjct: 21 ALKKLQASLKLYADDS-----------APALAI-----------KA--TME 47
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide
repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A
{Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3
b.26.1.2 PDB: 2fez_A*
Length = 388
Score = 27.7 bits (62), Expect = 4.0
Identities = 6/13 (46%), Positives = 10/13 (76%)
Query: 96 RRLRRALQDELGL 108
RR++ L D+LG+
Sbjct: 229 RRVKTTLADDLGI 241
>2xmz_A Hydrolase, alpha/beta hydrolase fold family; menaquinone
biosynthesis, lyase; 1.94A {Staphylococcus aureus}
Length = 269
Score = 27.3 bits (61), Expect = 4.5
Identities = 8/52 (15%), Positives = 19/52 (36%)
Query: 77 RIGHLVLVGVPGELTTMAGRRLRRALQDELGLLMESDVIIAGLANTYADYVT 128
I +L+L + A + RR + D +++ I + + +
Sbjct: 107 PISNLILESTSPGIKEEANQLERRLVDDARAKVLDIAGIELFVNDWEKLPLF 158
>2r44_A Uncharacterized protein; putative ATPase, structural genomics,
joint center for struc genomics, JCSG; HET: MSE PG4;
2.00A {Cytophaga hutchinsonii atcc 33406}
Length = 331
Score = 27.1 bits (61), Expect = 6.2
Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 18/49 (36%)
Query: 79 GHLVLVGVPGEL--TTMAGRRLRRALQDELGL----------LMESDVI 115
GH++L GVPG L T L + L L+ SD+I
Sbjct: 47 GHILLEGVPG-LAKTLSV-----NTLAKTMDLDFHRIQFTPDLLPSDLI 89
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.134 0.417
Gapped
Lambda K H
0.267 0.0669 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,910,949
Number of extensions: 230957
Number of successful extensions: 568
Number of sequences better than 10.0: 1
Number of HSP's gapped: 557
Number of HSP's successfully gapped: 17
Length of query: 246
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 155
Effective length of database: 4,160,982
Effective search space: 644952210
Effective search space used: 644952210
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.5 bits)