RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10777
         (246 letters)



>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI
           {Rhodobacter capsulatus [TaxId: 1061]}
          Length = 333

 Score = 28.7 bits (63), Expect = 0.56
 Identities = 8/26 (30%), Positives = 12/26 (46%)

Query: 77  RIGHLVLVGVPGELTTMAGRRLRRAL 102
            IG +++ G  G   + A R L   L
Sbjct: 27  GIGGVLVFGDRGTGKSTAVRALAALL 52


>d2bj7a2 d.58.18.4 (A:51-132) Nickel responsive regulator NikR,
          C-terminal domain {Archaeon Pyrococcus horikoshii
          [TaxId: 53953]}
          Length = 82

 Score = 24.6 bits (54), Expect = 5.2
 Identities = 7/48 (14%), Positives = 22/48 (45%), Gaps = 6/48 (12%)

Query: 55 LATGLMNVPHQWQPNTVSTQLVRIGH------LVLVGVPGELTTMAGR 96
          +   L+++ H++    +S+  V +        +V+ G   ++  +A +
Sbjct: 19 VVKALLDLQHEYLDEIISSLHVHMDEHNCLEVIVVKGEAKKIKMIADK 66


>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain
           (RecD) {Escherichia coli [TaxId: 562]}
          Length = 359

 Score = 25.2 bits (54), Expect = 8.7
 Identities = 16/69 (23%), Positives = 25/69 (36%), Gaps = 2/69 (2%)

Query: 80  HLVLVGVPGELT-TMAGRRLRRALQD-ELGLLMESDVIIAGLANTYADYVTTPEEYQIRR 137
            ++ +G   +L    AG  L         G   E    ++ L  T+    T  E   +R 
Sbjct: 290 RVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRD 349

Query: 138 CLYHLRTSY 146
            L  L+ SY
Sbjct: 350 SLCLLQKSY 358


>d2vo1a1 c.37.1.10 (A:1-273) CTP synthase PyrG, N-terminal domain
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 273

 Score = 24.8 bits (54), Expect = 9.1
 Identities = 12/61 (19%), Positives = 24/61 (39%)

Query: 96  RRLRRALQDELGLLMESDVIIAGLANTYADYVTTPEEYQIRRCLYHLRTSYPYHLHQSVA 155
             +R+AL       +E  V +  L  T  D  + P     R+  + ++     ++H S+ 
Sbjct: 124 WVMRQALIPVDEDGLEPQVCVIELGGTVGDIESMPFIEAFRQFQFKVKRENFCNIHVSLV 183

Query: 156 H 156
            
Sbjct: 184 P 184


>d1jsda_ b.19.1.2 (A:) Hemagglutinin {Influenza A virus, different
           strains [TaxId: 11320]}
          Length = 317

 Score = 25.1 bits (55), Expect = 10.0
 Identities = 8/15 (53%), Positives = 9/15 (60%)

Query: 49  KPKPILLATGLMNVP 63
             K + LA GL NVP
Sbjct: 301 GVKSLKLAVGLRNVP 315


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.134    0.417 

Gapped
Lambda     K      H
   0.267   0.0615    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 947,296
Number of extensions: 42562
Number of successful extensions: 109
Number of sequences better than 10.0: 1
Number of HSP's gapped: 109
Number of HSP's successfully gapped: 9
Length of query: 246
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 163
Effective length of database: 1,268,006
Effective search space: 206684978
Effective search space used: 206684978
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.1 bits)