BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10778
(556 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1MI1|A Chain A, Crystal Structure Of The Ph-Beach Domain Of Human
Neurobeachin
pdb|1MI1|B Chain B, Crystal Structure Of The Ph-Beach Domain Of Human
Neurobeachin
Length = 414
Score = 204 bits (520), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 100/191 (52%), Positives = 129/191 (67%), Gaps = 2/191 (1%)
Query: 12 PYHYGSHYSNSGTVLHFLVRIPPFTSMFLNYQDNNFDLPDRTFHNLATTWRLTSSESTTD 71
PYHY +HYS + + L +LVRI PFT+ FLN D FD PDRTF ++A +WR TS T+D
Sbjct: 223 PYHYNTHYSTATSTLSWLVRIEPFTTFFLNANDGKFDHPDRTFSSVARSWR-TSQRDTSD 281
Query: 72 VKELIPELFYLADILVNNEGFDFGVRQNGQRVDSVILPPWASDPRTFIMVHRQSLESELV 131
VKELIPE +YL + VN+ G++ GVR++ V+ V LPPWA P F+ ++R +LESE V
Sbjct: 282 VKELIPEFYYLPEXFVNSNGYNLGVREDEVVVNDVDLPPWAKKPEDFVRINRXALESEFV 341
Query: 132 SENLPHWIDLVFGYKQSGKAAVDAINVFHPATYYG-FDIAAIPDPLERTAWETMIRTYGQ 190
S L WIDL+FGYKQ G AV A+NVFH TY G ++ +I DP+ R A E I+ +GQ
Sbjct: 342 SCQLHQWIDLIFGYKQRGPEAVRALNVFHYLTYEGSVNLDSITDPVLREAXEAQIQNFGQ 401
Query: 191 TPRQLFKSAHP 201
TP QL HP
Sbjct: 402 TPSQLLIEPHP 412
>pdb|1T77|A Chain A, Crystal Structure Of The Ph-Beach Domains Of Human LrbaBGL
pdb|1T77|B Chain B, Crystal Structure Of The Ph-Beach Domains Of Human LrbaBGL
pdb|1T77|C Chain C, Crystal Structure Of The Ph-Beach Domains Of Human LrbaBGL
pdb|1T77|D Chain D, Crystal Structure Of The Ph-Beach Domains Of Human LrbaBGL
Length = 414
Score = 187 bits (474), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 93/190 (48%), Positives = 123/190 (64%), Gaps = 2/190 (1%)
Query: 13 YHYGSHYSNSGTVLHFLVRIPPFTSMFLNYQDNNFDLPDRTFHNLATTWRLTSSESTTDV 72
+HYG+HYS + VL +L+RI PFT+ FLN Q FD DRTF +++ WR S T+D+
Sbjct: 224 FHYGTHYSTASFVLAWLLRIEPFTTYFLNLQGGKFDHADRTFSSISRAWR-NSQRDTSDI 282
Query: 73 KELIPELFYLADILVNNEGFDFGVRQNGQRVDSVILPPWASDPRTFIMVHRQSLESELVS 132
KELIPE +YL ++ VN ++ GV +G V V LPPWA F+ ++R +LESE VS
Sbjct: 283 KELIPEFYYLPEMFVNFNNYNLGVMDDGTVVSDVELPPWAKTSEEFVHINRLALESEFVS 342
Query: 133 ENLPHWIDLVFGYKQSGKAAVDAINVFHPATYYG-FDIAAIPDPLERTAWETMIRTYGQT 191
L WIDL+FGYKQ G AV A+NVF+ TY G ++ +I DP+ R A E IR++GQT
Sbjct: 343 CQLHQWIDLIFGYKQQGPEAVRALNVFYYLTYEGAVNLNSITDPVLREAVEAQIRSFGQT 402
Query: 192 PRQLFKSAHP 201
P QL HP
Sbjct: 403 PSQLLIEPHP 412
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 63/255 (24%), Positives = 100/255 (39%), Gaps = 43/255 (16%)
Query: 298 WNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNA 357
WN L++ V P G TIA+A+ D T+ L +G +L
Sbjct: 166 WNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASAS---DDKTVKLWNRNGQLL-------- 214
Query: 358 STNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVD 417
L GHS+ V + S+S+D T LW+ N G + +
Sbjct: 215 -----------QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN--GQLLQT-LTG 260
Query: 418 PNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTINAQLITSLAS-ELRITSVTFSNAP 476
++ V+ V IAS + ++L N QL+ +L + V FS P
Sbjct: 261 HSSSVNGVAFRPDGQTIASA-----SDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFS--P 313
Query: 477 EGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNTEGLV 536
+G I + D T++LW+ HL TL T + V V +S D Q + +++ + V
Sbjct: 314 DG---QTIASASDDKTVKLWN-RNGQHLQTL-TGHSSSVWGVAFSPDGQTIASASDDKTV 368
Query: 537 IIWESSSHNRTPKFL 551
+W NR + L
Sbjct: 369 KLW-----NRNGQLL 378
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 78/182 (42%), Gaps = 21/182 (11%)
Query: 371 LLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSET 430
L GHS+ V + S+S+D T LW+ N G + + ++ V V S
Sbjct: 381 LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN--GQLLQT-LTGHSSSVWGVAFSPD 437
Query: 431 NGEIASVLQTTKTGGSILRLHTINAQLITSLAS-ELRITSVTFSNAPEGVSQNVIVTGHS 489
+ IAS + ++L N QL+ +L + V FS P+G I +
Sbjct: 438 DQTIASA-----SDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFS--PDG---QTIASASD 487
Query: 490 DGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWESSSHNRTPK 549
D T++LW+ + LL T + V V +S D Q + +++ + V +W NR +
Sbjct: 488 DKTVKLWN--RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW-----NRNGQ 540
Query: 550 FL 551
L
Sbjct: 541 LL 542
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 62/255 (24%), Positives = 99/255 (38%), Gaps = 43/255 (16%)
Query: 298 WNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNA 357
WN L++ V P G TIA+A+ D T+ L +G +L
Sbjct: 43 WNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASAS---DDKTVKLWNRNGQLL-------- 91
Query: 358 STNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVD 417
L GHS+ V + S+S+D T LW+ N G + +
Sbjct: 92 -----------QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN--GQLLQT-LTG 137
Query: 418 PNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTINAQLITSLAS-ELRITSVTFSNAP 476
++ V V S IAS + ++L N QL+ +L + V FS P
Sbjct: 138 HSSSVWGVAFSPDGQTIASA-----SDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFS--P 190
Query: 477 EGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNTEGLV 536
+G I + D T++LW+ + LL T + V V +S D Q + +++ + V
Sbjct: 191 DG---QTIASASDDKTVKLWN--RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTV 245
Query: 537 IIWESSSHNRTPKFL 551
+W NR + L
Sbjct: 246 KLW-----NRNGQLL 255
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 77/188 (40%), Gaps = 21/188 (11%)
Query: 365 CKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSH 424
K L HS+ V + S+S+D T LW+ N G + + ++ V
Sbjct: 6 VKERNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN--GQLLQT-LTGHSSSVWG 62
Query: 425 VTMSETNGEIASVLQTTKTGGSILRLHTINAQLITSLAS-ELRITSVTFSNAPEGVSQNV 483
V S IAS + ++L N QL+ +L + V FS P+G
Sbjct: 63 VAFSPDGQTIASA-----SDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFS--PDG---QT 112
Query: 484 IVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWESSS 543
I + D T++LW+ + LL T + V V +S D Q + +++ + V +W
Sbjct: 113 IASASDDKTVKLWN--RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW---- 166
Query: 544 HNRTPKFL 551
NR + L
Sbjct: 167 -NRNGQLL 173
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 76/182 (41%), Gaps = 21/182 (11%)
Query: 371 LLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSET 430
L GHS+ V + S+S+D T LW+ N G + + ++ V V S
Sbjct: 340 LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN--GQLLQT-LTGHSSSVRGVAFSPD 396
Query: 431 NGEIASVLQTTKTGGSILRLHTINAQLITSLAS-ELRITSVTFSNAPEGVSQNVIVTGHS 489
IAS + ++L N QL+ +L + V FS P+ I +
Sbjct: 397 GQTIASA-----SDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFS--PD---DQTIASASD 446
Query: 490 DGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWESSSHNRTPK 549
D T++LW+ + LL T + V V +S D Q + +++ + V +W NR +
Sbjct: 447 DKTVKLWN--RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW-----NRNGQ 499
Query: 550 FL 551
L
Sbjct: 500 LL 501
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 86/193 (44%), Gaps = 30/193 (15%)
Query: 359 TNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINT-------IGYIR 411
+++ + P L GHSA V+D+ L + AVS+S D + LW++ +G+ +
Sbjct: 51 SSECSYGLPDRRLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTK 110
Query: 412 EIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGG--SILRLHTINAQLITSLASELRITS 469
+ V V S N +I S GG + LR+ + + + +L+
Sbjct: 111 D---------VLSVAFSPDNRQIVS-------GGRDNALRVWNVKGECMHTLSRGAHTDW 154
Query: 470 VTFSNAPEGVSQNVIVTGHSDGTIQLW--SGYKLAHLLTLNTNVALPVIAVTYSCDSQHL 527
V+ + VIV+G D +++W + +L L +TN V +VT S D
Sbjct: 155 VSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNY---VTSVTVSPDGSLC 211
Query: 528 YASNTEGLVIIWE 540
+S+ +G+ +W+
Sbjct: 212 ASSDKDGVARLWD 224
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 58/134 (43%), Gaps = 17/134 (12%)
Query: 369 TILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMS 428
T L GH+ VT + + S+ SS +DG LWD+ + E+ P++ + S
Sbjct: 190 TDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMA---AGAPINQICFS 246
Query: 429 ETNGEIASVLQTTKTGGSILRLHTINAQLITSLASELRITSVTFSNAPEGVS------QN 482
+ + T+ G I L N +I LA E + + PE VS +
Sbjct: 247 PNRYWMCAA---TEKGIRIFDLE--NKDIIVELAPEHQGSKKIV---PECVSIAWSADGS 298
Query: 483 VIVTGHSDGTIQLW 496
+ +G++D I++W
Sbjct: 299 TLYSGYTDNVIRVW 312
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 41/193 (21%), Positives = 78/193 (40%), Gaps = 38/193 (19%)
Query: 363 EFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINT-------IGYIREIPC 415
+F P GHS V D L A + A+S+S D T LWD+ T +G+ ++
Sbjct: 47 KFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMS 106
Query: 416 VDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTINAQLITSL------ASELRITS 469
VD + S + + I ++ TI Q + +L S++R+
Sbjct: 107 VDIDKKASMIISGSRDKTI--------------KVWTIKGQCLATLLGHNDWVSQVRVV- 151
Query: 470 VTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKL---AHLLTLNTNVALPVIAVTYSCDSQH 526
N I++ +D ++ W+ + A + N+N+ +T S D
Sbjct: 152 ---PNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNIN----TLTASPDGTL 204
Query: 527 LYASNTEGLVIIW 539
+ ++ +G +++W
Sbjct: 205 IASAGKDGEIMLW 217
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 41/193 (21%), Positives = 78/193 (40%), Gaps = 38/193 (19%)
Query: 363 EFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINT-------IGYIREIPC 415
+F P GHS V D L A + A+S+S D T LWD+ T +G+ ++
Sbjct: 53 KFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMS 112
Query: 416 VDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTINAQLITSL------ASELRITS 469
VD + S + + I ++ TI Q + +L S++R+
Sbjct: 113 VDIDKKASMIISGSRDKTI--------------KVWTIKGQCLATLLGHNDWVSQVRVV- 157
Query: 470 VTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKL---AHLLTLNTNVALPVIAVTYSCDSQH 526
N I++ +D ++ W+ + A + N+N+ +T S D
Sbjct: 158 ---PNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNIN----TLTASPDGTL 210
Query: 527 LYASNTEGLVIIW 539
+ ++ +G +++W
Sbjct: 211 IASAGKDGEIMLW 223
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 41/193 (21%), Positives = 78/193 (40%), Gaps = 38/193 (19%)
Query: 363 EFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINT-------IGYIREIPC 415
+F P GHS V D L A + A+S+S D T LWD+ T +G+ ++
Sbjct: 53 KFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMS 112
Query: 416 VDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTINAQLITSL------ASELRITS 469
VD + S + + I ++ TI Q + +L S++R+
Sbjct: 113 VDIDKKASMIISGSRDKTI--------------KVWTIKGQCLATLLGHNDWVSQVRVV- 157
Query: 470 VTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKL---AHLLTLNTNVALPVIAVTYSCDSQH 526
N I++ +D ++ W+ + A + N+N+ +T S D
Sbjct: 158 ---PNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNIN----TLTASPDGTL 210
Query: 527 LYASNTEGLVIIW 539
+ ++ +G +++W
Sbjct: 211 IASAGKDGEIMLW 223
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 41/193 (21%), Positives = 78/193 (40%), Gaps = 38/193 (19%)
Query: 363 EFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINT-------IGYIREIPC 415
+F P GHS V D L A + A+S+S D T LWD+ T +G+ ++
Sbjct: 53 KFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMS 112
Query: 416 VDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTINAQLITSL------ASELRITS 469
VD + S + + I ++ TI Q + +L S++R+
Sbjct: 113 VDIDKKASMIISGSRDKTI--------------KVWTIKGQCLATLLGHNDWVSQVRVV- 157
Query: 470 VTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKL---AHLLTLNTNVALPVIAVTYSCDSQH 526
N I++ +D ++ W+ + A + N+N+ +T S D
Sbjct: 158 ---PNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNIN----TLTASPDGTL 210
Query: 527 LYASNTEGLVIIW 539
+ ++ +G +++W
Sbjct: 211 IASAGKDGEIMLW 223
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 41/193 (21%), Positives = 78/193 (40%), Gaps = 38/193 (19%)
Query: 363 EFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINT-------IGYIREIPC 415
+F P GHS V D L A + A+S+S D T LWD+ T +G+ ++
Sbjct: 53 KFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMS 112
Query: 416 VDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTINAQLITSL------ASELRITS 469
VD + S + + I ++ TI Q + +L S++R+
Sbjct: 113 VDIDKKASMIISGSRDKTI--------------KVWTIKGQCLATLLGHNDWVSQVRVV- 157
Query: 470 VTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKL---AHLLTLNTNVALPVIAVTYSCDSQH 526
N I++ +D ++ W+ + A + N+N+ +T S D
Sbjct: 158 ---PNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNIN----TLTASPDGTL 210
Query: 527 LYASNTEGLVIIW 539
+ ++ +G +++W
Sbjct: 211 IASAGKDGEIMLW 223
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 41/193 (21%), Positives = 77/193 (39%), Gaps = 38/193 (19%)
Query: 363 EFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINT-------IGYIREIPC 415
+F P GHS V D L A + A+S+S D T LWD+ T +G+ ++
Sbjct: 53 KFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXS 112
Query: 416 VDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTINAQLITSL------ASELRITS 469
VD + S + + I ++ TI Q + +L S++R+
Sbjct: 113 VDIDKKASXIISGSRDKTI--------------KVWTIKGQCLATLLGHNDWVSQVRVV- 157
Query: 470 VTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKL---AHLLTLNTNVALPVIAVTYSCDSQH 526
N I++ +D ++ W+ + A + N+N+ +T S D
Sbjct: 158 ---PNEKADDDSVTIISAGNDKXVKAWNLNQFQIEADFIGHNSNIN----TLTASPDGTL 210
Query: 527 LYASNTEGLVIIW 539
+ ++ +G + +W
Sbjct: 211 IASAGKDGEIXLW 223
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 36.6 bits (83), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 38/88 (43%), Gaps = 7/88 (7%)
Query: 350 VYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGY 409
+YE E N F P L GH+ V+DL L A+SSS D T LWD+ T
Sbjct: 56 LYEEEQNGY-----FGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTT 110
Query: 410 IREIPCVDPNTPVSHVTMSETNGEIASV 437
+ V + V V S N +I S
Sbjct: 111 YKRF--VGHQSEVYSVAFSPDNRQILSA 136
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 36.2 bits (82), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Query: 367 PPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVT 426
P L GHS V+D+ + + A+S S DGT LWD+ T R V V V
Sbjct: 78 PQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRF--VGHTKDVLSVA 135
Query: 427 MSETNGEIAS 436
S N +I S
Sbjct: 136 FSSDNRQIVS 145
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 365 CKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDIN 405
CK T +GH+ + + + S+ S +DG +LWD+N
Sbjct: 205 CKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLN 245
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 35.8 bits (81), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Query: 367 PPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVT 426
P L GHS V+D+ + + A+S S DGT LWD+ T R V V V
Sbjct: 55 PQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRF--VGHTKDVLSVA 112
Query: 427 MSETNGEIAS 436
S N +I S
Sbjct: 113 FSSDNRQIVS 122
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 365 CKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDIN 405
CK T +GH+ + + + S+ S +DG +LWD+N
Sbjct: 182 CKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLN 222
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 35.8 bits (81), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 58/114 (50%), Gaps = 15/114 (13%)
Query: 433 EIASVLQTTKTGGSILRLHTINAQL-------ITSLASELRITSVTFSNAPEGVSQNVIV 485
+A +++T + G +L TI A+L +S + ++T + +S+ N IV
Sbjct: 71 RLARIVETDQEGKKYWKL-TIIAELRHPFALSASSGKTTNQVTCLAWSH-----DGNSIV 124
Query: 486 TGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIW 539
TG +G ++LW+ K LL + P+++V ++ D H+ + + E + I+W
Sbjct: 125 TGVENGELRLWN--KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILW 176
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Query: 479 VSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVII 538
V + +++ DG+++LWS K LL L+ +P+ A S D Q + +G V +
Sbjct: 298 VGDDKVISCSMDGSVRLWS-LKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNV 356
Query: 539 WESSSHNRTPKFL 551
++ N + L
Sbjct: 357 YDLKKLNSKSRSL 369
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 80/178 (44%), Gaps = 17/178 (9%)
Query: 371 LLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSET 430
L GH V + + +A SSS D LWD+ I+ I PV T++ +
Sbjct: 76 LEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDA----GPVDAWTLAFS 131
Query: 431 NGEIASVLQTTKTGGSILRLHTINAQLITSLASELR-ITSVTFSNAPEGVSQNVIVTGHS 489
+ L T G + + + SL + + I S+ +S P+G + +G
Sbjct: 132 PD--SQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYS--PDG---KYLASGAI 184
Query: 490 DGTIQLW--SGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWESSSHN 545
DG I ++ + KL H L + A+P+ ++T+S DSQ L ++ +G + I++ N
Sbjct: 185 DGIINIFDIATGKLLHTLEGH---AMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHAN 239
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 46/210 (21%), Positives = 92/210 (43%), Gaps = 31/210 (14%)
Query: 340 WLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTC 399
WL +S + L+ + A K E + GH ++D+ + ++ VS+S+D T
Sbjct: 59 WLASSSADKLIKIW--GAYDGKFE-----KTISGHKLGISDVAWSSDSNLLVSASDDKTL 111
Query: 400 LLWDINT-------IGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHT 452
+WD+++ G+ + C + N P S++ +S + E + KTG + L
Sbjct: 112 KIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIVSGSFDESVRIWD-VKTGKCLKTLP- 168
Query: 453 INAQLITSLASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVA 512
A +++V F+ ++IV+ DG ++W L TL +
Sbjct: 169 ---------AHSDPVSAVHFNR-----DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 214
Query: 513 LPVIAVTYSCDSQHLYASNTEGLVIIWESS 542
PV V +S + +++ A+ + + +W+ S
Sbjct: 215 PPVSFVKFSPNGKYILAATLDNTLKLWDYS 244
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 57/133 (42%), Gaps = 20/133 (15%)
Query: 371 LLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSET 430
L HS V+ ++ S+ VSSS DG C +WD + G + D N PVS V S
Sbjct: 167 LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS-GQCLKTLIDDDNPPVSFVKFSP- 224
Query: 431 NGE--IASVLQTT-----KTGGSILRLHTINAQLITSLASELRITSVTFSNAPEGVSQNV 483
NG+ +A+ L T + G L+ +T + + + +T +
Sbjct: 225 NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW----------- 273
Query: 484 IVTGHSDGTIQLW 496
IV+G D + +W
Sbjct: 274 IVSGSEDNLVYIW 286
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 482 NVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWES 541
N+IV+G D ++++W L TL + + PV AV ++ D + +S+ +GL IW++
Sbjct: 142 NLIVSGSFDESVRIWDVKTGKCLKTLPAH-SDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 200
Query: 542 SS 543
+S
Sbjct: 201 AS 202
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 68/173 (39%), Gaps = 12/173 (6%)
Query: 371 LLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSET 430
L GHS V D+ L + A+S S DG LWD+ R V V V S
Sbjct: 426 LTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRF--VGHTKDVLSVAFSLD 483
Query: 431 NGEIASVLQTTKTGGSILRLHTIN-AQLITSLASELRITSVTFSNAPEGVSQNVIVTGHS 489
N +I S + +I +T+ + S E V+ Q IV+
Sbjct: 484 NRQIVSASRDR----TIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASW 539
Query: 490 DGTIQLW--SGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWE 540
D T+++W S KL L +T V V S D + +G+V++W+
Sbjct: 540 DKTVKVWNLSNCKLRSTLAGHTGY---VSTVAVSPDGSLCASGGKDGVVLLWD 589
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 31/147 (21%), Positives = 63/147 (42%), Gaps = 23/147 (15%)
Query: 365 CKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSH 424
CK + L GH+ V+ + + S+ S +DG LLWD + +++ ++ N+ +
Sbjct: 551 CKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWD---LAEGKKLYSLEANSVIHA 607
Query: 425 VTMSETNGEIASVLQTTKTGGSILRLHTINAQLITSLASELRITSVTFSNA-PEGVSQNV 483
+ S + + T+ G I L + ++ L +L+ + N+ P + V
Sbjct: 608 LCFSPNRYWLCAA---TEHGIKIWDLES--KSIVEDLKVDLKAEAEKADNSGPAATKRKV 662
Query: 484 I--------------VTGHSDGTIQLW 496
I +G++DG I++W
Sbjct: 663 IYCTSLNWSADGSTLFSGYTDGVIRVW 689
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 46/210 (21%), Positives = 92/210 (43%), Gaps = 31/210 (14%)
Query: 340 WLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTC 399
WL +S + L+ + A K E + GH ++D+ + ++ VS+S+D T
Sbjct: 61 WLASSSADKLIKIW--GAYDGKFE-----KTISGHKLGISDVAWSSDSNLLVSASDDKTL 113
Query: 400 LLWDINT-------IGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHT 452
+WD+++ G+ + C + N P S++ +S + E + KTG + L
Sbjct: 114 KIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIVSGSFDESVRIWD-VKTGKCLKTLP- 170
Query: 453 INAQLITSLASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVA 512
A +++V F+ ++IV+ DG ++W L TL +
Sbjct: 171 ---------AHSDPVSAVHFNR-----DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 216
Query: 513 LPVIAVTYSCDSQHLYASNTEGLVIIWESS 542
PV V +S + +++ A+ + + +W+ S
Sbjct: 217 PPVSFVKFSPNGKYILAATLDNTLKLWDYS 246
Score = 33.1 bits (74), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 57/133 (42%), Gaps = 20/133 (15%)
Query: 371 LLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSET 430
L HS V+ ++ S+ VSSS DG C +WD + G + D N PVS V S
Sbjct: 169 LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS-GQCLKTLIDDDNPPVSFVKFSP- 226
Query: 431 NGE--IASVLQTT-----KTGGSILRLHTINAQLITSLASELRITSVTFSNAPEGVSQNV 483
NG+ +A+ L T + G L+ +T + + + +T +
Sbjct: 227 NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW----------- 275
Query: 484 IVTGHSDGTIQLW 496
IV+G D + +W
Sbjct: 276 IVSGSEDNLVYIW 288
Score = 32.7 bits (73), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 482 NVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWES 541
N+IV+G D ++++W L TL + + PV AV ++ D + +S+ +GL IW++
Sbjct: 144 NLIVSGSFDESVRIWDVKTGKCLKTLPAH-SDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 202
Query: 542 SS 543
+S
Sbjct: 203 AS 204
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 46/210 (21%), Positives = 92/210 (43%), Gaps = 31/210 (14%)
Query: 340 WLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTC 399
WL +S + L+ + A K E + GH ++D+ + ++ VS+S+D T
Sbjct: 43 WLASSSADKLIKIW--GAYDGKFE-----KTISGHKLGISDVAWSSDSNLLVSASDDKTL 95
Query: 400 LLWDINT-------IGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHT 452
+WD+++ G+ + C + N P S++ +S + E + KTG + L
Sbjct: 96 KIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIVSGSFDESVRIWD-VKTGKCLKTLP- 152
Query: 453 INAQLITSLASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVA 512
A +++V F+ ++IV+ DG ++W L TL +
Sbjct: 153 ---------AHSDPVSAVHFNR-----DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 198
Query: 513 LPVIAVTYSCDSQHLYASNTEGLVIIWESS 542
PV V +S + +++ A+ + + +W+ S
Sbjct: 199 PPVSFVKFSPNGKYILAATLDNTLKLWDYS 228
Score = 33.1 bits (74), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 57/133 (42%), Gaps = 20/133 (15%)
Query: 371 LLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSET 430
L HS V+ ++ S+ VSSS DG C +WD + G + D N PVS V S
Sbjct: 151 LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS-GQCLKTLIDDDNPPVSFVKFSP- 208
Query: 431 NGE--IASVLQTT-----KTGGSILRLHTINAQLITSLASELRITSVTFSNAPEGVSQNV 483
NG+ +A+ L T + G L+ +T + + + +T +
Sbjct: 209 NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW----------- 257
Query: 484 IVTGHSDGTIQLW 496
IV+G D + +W
Sbjct: 258 IVSGSEDNLVYIW 270
Score = 32.7 bits (73), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 482 NVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWES 541
N+IV+G D ++++W L TL + + PV AV ++ D + +S+ +GL IW++
Sbjct: 126 NLIVSGSFDESVRIWDVKTGKCLKTLPAH-SDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 184
Query: 542 SS 543
+S
Sbjct: 185 AS 186
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 46/210 (21%), Positives = 92/210 (43%), Gaps = 31/210 (14%)
Query: 340 WLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTC 399
WL +S + L+ + A K E + GH ++D+ + ++ VS+S+D T
Sbjct: 33 WLASSSADKLIKIW--GAYDGKFE-----KTISGHKLGISDVAWSSDSNLLVSASDDKTL 85
Query: 400 LLWDINT-------IGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHT 452
+WD+++ G+ + C + N P S++ +S + E + KTG + L
Sbjct: 86 KIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIVSGSFDESVRIWD-VKTGKCLKTLP- 142
Query: 453 INAQLITSLASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVA 512
A +++V F+ ++IV+ DG ++W L TL +
Sbjct: 143 ---------AHSDPVSAVHFNR-----DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 188
Query: 513 LPVIAVTYSCDSQHLYASNTEGLVIIWESS 542
PV V +S + +++ A+ + + +W+ S
Sbjct: 189 PPVSFVKFSPNGKYILAATLDNTLKLWDYS 218
Score = 32.7 bits (73), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 58/134 (43%), Gaps = 20/134 (14%)
Query: 371 LLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSET 430
L HS V+ ++ S+ VSSS DG C +WD + G + D N PVS V S
Sbjct: 141 LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS-GQCLKTLIDDDNPPVSFVKFSP- 198
Query: 431 NGE--IASVLQTT-----KTGGSILRLHTINAQLITSLASELRITSVTFSNAPEGVSQNV 483
NG+ +A+ L T + G L+ +T + + + +T +
Sbjct: 199 NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW----------- 247
Query: 484 IVTGHSDGTIQLWS 497
IV+G D + +W+
Sbjct: 248 IVSGSEDNLVYIWN 261
Score = 32.3 bits (72), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 482 NVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWES 541
N+IV+G D ++++W L TL + + PV AV ++ D + +S+ +GL IW++
Sbjct: 116 NLIVSGSFDESVRIWDVKTGKCLKTLPAH-SDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 174
Query: 542 SS 543
+S
Sbjct: 175 AS 176
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 366 KPPT--ILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIR 411
+PP L GH + VT + FSV VS+SED T +WD T + R
Sbjct: 97 RPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFER 144
Score = 32.3 bits (72), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 61/148 (41%), Gaps = 12/148 (8%)
Query: 371 LLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINT-------IGYIREIPCVDPNTPVS 423
+ GH V+ + + VS+S D T +W++ T G+ + V PN +
Sbjct: 188 MHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGT 247
Query: 424 HVTMSETNGEIASVLQTTKTGGSILRLHTINAQLITSLASELRITSVTFSNAPE----GV 479
+ + + + TK + LR H + I S A E +S++ + E G
Sbjct: 248 LIASCSNDQTVRVWVVATKECKAELREHRHVVECI-SWAPESSYSSISEATGSETKKSGK 306
Query: 480 SQNVIVTGHSDGTIQLWSGYKLAHLLTL 507
+++G D TI++W L+TL
Sbjct: 307 PGPFLLSGSRDKTIKMWDVSTGMCLMTL 334
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 46/210 (21%), Positives = 92/210 (43%), Gaps = 31/210 (14%)
Query: 340 WLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTC 399
WL +S + L+ + A K E + GH ++D+ + ++ VS+S+D T
Sbjct: 43 WLASSSADKLIKIW--GAYDGKFE-----KTISGHKLGISDVAWSSDSNLLVSASDDKTL 95
Query: 400 LLWDINT-------IGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHT 452
+WD+++ G+ + C + N P S++ +S + E + KTG + L
Sbjct: 96 KIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIVSGSFDESVRIWD-VKTGKCLKTLP- 152
Query: 453 INAQLITSLASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVA 512
A +++V F+ ++IV+ DG ++W L TL +
Sbjct: 153 ---------AHSDPVSAVHFNR-----DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 198
Query: 513 LPVIAVTYSCDSQHLYASNTEGLVIIWESS 542
PV V +S + +++ A+ + + +W+ S
Sbjct: 199 PPVSFVKFSPNGKYILAATLDNTLKLWDYS 228
Score = 32.7 bits (73), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 57/133 (42%), Gaps = 20/133 (15%)
Query: 371 LLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSET 430
L HS V+ ++ S+ VSSS DG C +WD + G + D N PVS V S
Sbjct: 151 LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS-GQCLKTLIDDDNPPVSFVKFSP- 208
Query: 431 NGE--IASVLQTT-----KTGGSILRLHTINAQLITSLASELRITSVTFSNAPEGVSQNV 483
NG+ +A+ L T + G L+ +T + + + +T +
Sbjct: 209 NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW----------- 257
Query: 484 IVTGHSDGTIQLW 496
IV+G D + +W
Sbjct: 258 IVSGSEDNLVYIW 270
Score = 32.3 bits (72), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 482 NVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWES 541
N+IV+G D ++++W L TL + + PV AV ++ D + +S+ +GL IW++
Sbjct: 126 NLIVSGSFDESVRIWDVKTGKCLKTLPAH-SDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 184
Query: 542 SS 543
+S
Sbjct: 185 AS 186
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 46/210 (21%), Positives = 92/210 (43%), Gaps = 31/210 (14%)
Query: 340 WLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTC 399
WL +S + L+ + A K E + GH ++D+ + ++ VS+S+D T
Sbjct: 37 WLASSSADKLIKIW--GAYDGKFE-----KTISGHKLGISDVAWSSDSNLLVSASDDKTL 89
Query: 400 LLWDINT-------IGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHT 452
+WD+++ G+ + C + N P S++ +S + E + KTG + L
Sbjct: 90 KIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIVSGSFDESVRIWD-VKTGKCLKTLP- 146
Query: 453 INAQLITSLASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVA 512
A +++V F+ ++IV+ DG ++W L TL +
Sbjct: 147 ---------AHSDPVSAVHFNR-----DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 192
Query: 513 LPVIAVTYSCDSQHLYASNTEGLVIIWESS 542
PV V +S + +++ A+ + + +W+ S
Sbjct: 193 PPVSFVKFSPNGKYILAATLDNTLKLWDYS 222
Score = 32.7 bits (73), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 57/133 (42%), Gaps = 20/133 (15%)
Query: 371 LLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSET 430
L HS V+ ++ S+ VSSS DG C +WD + G + D N PVS V S
Sbjct: 145 LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS-GQCLKTLIDDDNPPVSFVKFSP- 202
Query: 431 NGE--IASVLQTT-----KTGGSILRLHTINAQLITSLASELRITSVTFSNAPEGVSQNV 483
NG+ +A+ L T + G L+ +T + + + +T +
Sbjct: 203 NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW----------- 251
Query: 484 IVTGHSDGTIQLW 496
IV+G D + +W
Sbjct: 252 IVSGSEDNLVYIW 264
Score = 32.3 bits (72), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 482 NVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWES 541
N+IV+G D ++++W L TL + + PV AV ++ D + +S+ +GL IW++
Sbjct: 120 NLIVSGSFDESVRIWDVKTGKCLKTLPAH-SDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 178
Query: 542 SS 543
+S
Sbjct: 179 AS 180
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 46/210 (21%), Positives = 92/210 (43%), Gaps = 31/210 (14%)
Query: 340 WLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTC 399
WL +S + L+ + A K E + GH ++D+ + ++ VS+S+D T
Sbjct: 38 WLASSSADKLIKIW--GAYDGKFE-----KTISGHKLGISDVAWSSDSNLLVSASDDKTL 90
Query: 400 LLWDINT-------IGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHT 452
+WD+++ G+ + C + N P S++ +S + E + KTG + L
Sbjct: 91 KIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIVSGSFDESVRIWD-VKTGKCLKTLP- 147
Query: 453 INAQLITSLASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVA 512
A +++V F+ ++IV+ DG ++W L TL +
Sbjct: 148 ---------AHSDPVSAVHFNR-----DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 193
Query: 513 LPVIAVTYSCDSQHLYASNTEGLVIIWESS 542
PV V +S + +++ A+ + + +W+ S
Sbjct: 194 PPVSFVKFSPNGKYILAATLDNTLKLWDYS 223
Score = 32.7 bits (73), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 57/133 (42%), Gaps = 20/133 (15%)
Query: 371 LLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSET 430
L HS V+ ++ S+ VSSS DG C +WD + G + D N PVS V S
Sbjct: 146 LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS-GQCLKTLIDDDNPPVSFVKFSP- 203
Query: 431 NGE--IASVLQTT-----KTGGSILRLHTINAQLITSLASELRITSVTFSNAPEGVSQNV 483
NG+ +A+ L T + G L+ +T + + + +T +
Sbjct: 204 NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW----------- 252
Query: 484 IVTGHSDGTIQLW 496
IV+G D + +W
Sbjct: 253 IVSGSEDNLVYIW 265
Score = 32.3 bits (72), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 482 NVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWES 541
N+IV+G D ++++W L TL + + PV AV ++ D + +S+ +GL IW++
Sbjct: 121 NLIVSGSFDESVRIWDVKTGKCLKTLPAH-SDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 179
Query: 542 SS 543
+S
Sbjct: 180 AS 181
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 46/210 (21%), Positives = 92/210 (43%), Gaps = 31/210 (14%)
Query: 340 WLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTC 399
WL +S + L+ + A K E + GH ++D+ + ++ VS+S+D T
Sbjct: 37 WLASSSADKLIKIW--GAYDGKFE-----KTISGHKLGISDVAWSSDSNLLVSASDDKTL 89
Query: 400 LLWDINT-------IGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHT 452
+WD+++ G+ + C + N P S++ +S + E + KTG + L
Sbjct: 90 KIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIVSGSFDESVRIWD-VKTGKCLKTLP- 146
Query: 453 INAQLITSLASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVA 512
A +++V F+ ++IV+ DG ++W L TL +
Sbjct: 147 ---------AHSDPVSAVHFNR-----DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 192
Query: 513 LPVIAVTYSCDSQHLYASNTEGLVIIWESS 542
PV V +S + +++ A+ + + +W+ S
Sbjct: 193 PPVSFVKFSPNGKYILAATLDNTLKLWDYS 222
Score = 32.7 bits (73), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 57/133 (42%), Gaps = 20/133 (15%)
Query: 371 LLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSET 430
L HS V+ ++ S+ VSSS DG C +WD + G + D N PVS V S
Sbjct: 145 LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS-GQCLKTLIDDDNPPVSFVKFSP- 202
Query: 431 NGE--IASVLQTT-----KTGGSILRLHTINAQLITSLASELRITSVTFSNAPEGVSQNV 483
NG+ +A+ L T + G L+ +T + + + +T +
Sbjct: 203 NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW----------- 251
Query: 484 IVTGHSDGTIQLW 496
IV+G D + +W
Sbjct: 252 IVSGSEDNLVYIW 264
Score = 32.3 bits (72), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 482 NVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWES 541
N+IV+G D ++++W L TL + + PV AV ++ D + +S+ +GL IW++
Sbjct: 120 NLIVSGSFDESVRIWDVKTGKCLKTLPAH-SDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 178
Query: 542 SS 543
+S
Sbjct: 179 AS 180
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 46/210 (21%), Positives = 92/210 (43%), Gaps = 31/210 (14%)
Query: 340 WLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTC 399
WL +S + L+ + A K E + GH ++D+ + ++ VS+S+D T
Sbjct: 54 WLASSSADKLIKIW--GAYDGKFE-----KTISGHKLGISDVAWSSDSNLLVSASDDKTL 106
Query: 400 LLWDINT-------IGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHT 452
+WD+++ G+ + C + N P S++ +S + E + KTG + L
Sbjct: 107 KIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIVSGSFDESVRIWD-VKTGKCLKTLP- 163
Query: 453 INAQLITSLASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVA 512
A +++V F+ ++IV+ DG ++W L TL +
Sbjct: 164 ---------AHSDPVSAVHFNR-----DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 209
Query: 513 LPVIAVTYSCDSQHLYASNTEGLVIIWESS 542
PV V +S + +++ A+ + + +W+ S
Sbjct: 210 PPVSFVKFSPNGKYILAATLDNTLKLWDYS 239
Score = 32.7 bits (73), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 57/133 (42%), Gaps = 20/133 (15%)
Query: 371 LLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSET 430
L HS V+ ++ S+ VSSS DG C +WD + G + D N PVS V S
Sbjct: 162 LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS-GQCLKTLIDDDNPPVSFVKFSP- 219
Query: 431 NGE--IASVLQTT-----KTGGSILRLHTINAQLITSLASELRITSVTFSNAPEGVSQNV 483
NG+ +A+ L T + G L+ +T + + + +T +
Sbjct: 220 NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW----------- 268
Query: 484 IVTGHSDGTIQLW 496
IV+G D + +W
Sbjct: 269 IVSGSEDNLVYIW 281
Score = 32.3 bits (72), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 482 NVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWES 541
N+IV+G D ++++W L TL + + PV AV ++ D + +S+ +GL IW++
Sbjct: 137 NLIVSGSFDESVRIWDVKTGKCLKTLPAH-SDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 195
Query: 542 SS 543
+S
Sbjct: 196 AS 197
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 46/210 (21%), Positives = 92/210 (43%), Gaps = 31/210 (14%)
Query: 340 WLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTC 399
WL +S + L+ + A K E + GH ++D+ + ++ VS+S+D T
Sbjct: 40 WLAASSADKLIKIW--GAYDGKFE-----KTISGHKLGISDVAWSSDSNLLVSASDDKTL 92
Query: 400 LLWDINT-------IGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHT 452
+WD+++ G+ + C + N P S++ +S + E + KTG + L
Sbjct: 93 KIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIVSGSFDESVRIWD-VKTGKCLKTLP- 149
Query: 453 INAQLITSLASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVA 512
A +++V F+ ++IV+ DG ++W L TL +
Sbjct: 150 ---------AHSDPVSAVHFNR-----DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 195
Query: 513 LPVIAVTYSCDSQHLYASNTEGLVIIWESS 542
PV V +S + +++ A+ + + +W+ S
Sbjct: 196 PPVSFVKFSPNGKYILAATLDNTLKLWDYS 225
Score = 32.3 bits (72), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 58/134 (43%), Gaps = 20/134 (14%)
Query: 371 LLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSET 430
L HS V+ ++ S+ VSSS DG C +WD + G + D N PVS V S
Sbjct: 148 LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS-GQCLKTLIDDDNPPVSFVKFSP- 205
Query: 431 NGE--IASVLQTT-----KTGGSILRLHTINAQLITSLASELRITSVTFSNAPEGVSQNV 483
NG+ +A+ L T + G L+ +T + + + +T +
Sbjct: 206 NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW----------- 254
Query: 484 IVTGHSDGTIQLWS 497
IV+G D + +W+
Sbjct: 255 IVSGSEDNLVYIWN 268
Score = 32.3 bits (72), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 482 NVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWES 541
N+IV+G D ++++W L TL + + PV AV ++ D + +S+ +GL IW++
Sbjct: 123 NLIVSGSFDESVRIWDVKTGKCLKTLPAH-SDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 181
Query: 542 SS 543
+S
Sbjct: 182 AS 183
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 46/210 (21%), Positives = 92/210 (43%), Gaps = 31/210 (14%)
Query: 340 WLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTC 399
WL +S + L+ + A K E + GH ++D+ + ++ VS+S+D T
Sbjct: 36 WLASSSADKLIKIW--GAYDGKFE-----KTISGHKLGISDVAWSSDSNLLVSASDDKTL 88
Query: 400 LLWDINT-------IGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHT 452
+WD+++ G+ + C + N P S++ +S + E + KTG + L
Sbjct: 89 KIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIVSGSFDESVRIWD-VKTGKCLKTLP- 145
Query: 453 INAQLITSLASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVA 512
A +++V F+ ++IV+ DG ++W L TL +
Sbjct: 146 ---------AHSDPVSAVHFNR-----DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 191
Query: 513 LPVIAVTYSCDSQHLYASNTEGLVIIWESS 542
PV V +S + +++ A+ + + +W+ S
Sbjct: 192 PPVSFVKFSPNGKYILAATLDNTLKLWDYS 221
Score = 32.3 bits (72), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 57/133 (42%), Gaps = 20/133 (15%)
Query: 371 LLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSET 430
L HS V+ ++ S+ VSSS DG C +WD + G + D N PVS V S
Sbjct: 144 LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS-GQCLKTLIDDDNPPVSFVKFSP- 201
Query: 431 NGE--IASVLQTT-----KTGGSILRLHTINAQLITSLASELRITSVTFSNAPEGVSQNV 483
NG+ +A+ L T + G L+ +T + + + +T +
Sbjct: 202 NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW----------- 250
Query: 484 IVTGHSDGTIQLW 496
IV+G D + +W
Sbjct: 251 IVSGSEDNLVYIW 263
Score = 32.3 bits (72), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 482 NVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWES 541
N+IV+G D ++++W L TL + + PV AV ++ D + +S+ +GL IW++
Sbjct: 119 NLIVSGSFDESVRIWDVKTGKCLKTLPAH-SDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 177
Query: 542 SS 543
+S
Sbjct: 178 AS 179
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 46/210 (21%), Positives = 92/210 (43%), Gaps = 31/210 (14%)
Query: 340 WLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTC 399
WL +S + L+ + A K E + GH ++D+ + ++ VS+S+D T
Sbjct: 42 WLASSSADKLIKIW--GAYDGKFE-----KTISGHKLGISDVAWSSDSNLLVSASDDKTL 94
Query: 400 LLWDINT-------IGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHT 452
+WD+++ G+ + C + N P S++ +S + E + KTG + L
Sbjct: 95 KIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIVSGSFDESVRIWD-VKTGKCLKTLP- 151
Query: 453 INAQLITSLASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVA 512
A +++V F+ ++IV+ DG ++W L TL +
Sbjct: 152 ---------AHSDPVSAVHFNR-----DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 197
Query: 513 LPVIAVTYSCDSQHLYASNTEGLVIIWESS 542
PV V +S + +++ A+ + + +W+ S
Sbjct: 198 PPVSFVKFSPNGKYILAATLDNTLKLWDYS 227
Score = 32.7 bits (73), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 57/133 (42%), Gaps = 20/133 (15%)
Query: 371 LLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSET 430
L HS V+ ++ S+ VSSS DG C +WD + G + D N PVS V S
Sbjct: 150 LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS-GQCLKTLIDDDNPPVSFVKFSP- 207
Query: 431 NGE--IASVLQTT-----KTGGSILRLHTINAQLITSLASELRITSVTFSNAPEGVSQNV 483
NG+ +A+ L T + G L+ +T + + + +T +
Sbjct: 208 NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW----------- 256
Query: 484 IVTGHSDGTIQLW 496
IV+G D + +W
Sbjct: 257 IVSGSEDNLVYIW 269
Score = 32.3 bits (72), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 482 NVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWES 541
N+IV+G D ++++W L TL + + PV AV ++ D + +S+ +GL IW++
Sbjct: 125 NLIVSGSFDESVRIWDVKTGKCLKTLPAH-SDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 183
Query: 542 SS 543
+S
Sbjct: 184 AS 185
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 46/210 (21%), Positives = 92/210 (43%), Gaps = 31/210 (14%)
Query: 340 WLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTC 399
WL +S + L+ + A K E + GH ++D+ + ++ VS+S+D T
Sbjct: 43 WLASSSADKLIKIW--GAYDGKFE-----KTISGHKLGISDVAWSSDSNLLVSASDDKTL 95
Query: 400 LLWDINT-------IGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHT 452
+WD+++ G+ + C + N P S++ +S + E + KTG + L
Sbjct: 96 KIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIVSGSFDESVRIWD-VKTGKCLKTLP- 152
Query: 453 INAQLITSLASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVA 512
A +++V F+ ++IV+ DG ++W L TL +
Sbjct: 153 ---------AHSDPVSAVHFNR-----DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 198
Query: 513 LPVIAVTYSCDSQHLYASNTEGLVIIWESS 542
PV V +S + +++ A+ + + +W+ S
Sbjct: 199 PPVSFVKFSPNGKYILAATLDNTLKLWDYS 228
Score = 32.7 bits (73), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 57/133 (42%), Gaps = 20/133 (15%)
Query: 371 LLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSET 430
L HS V+ ++ S+ VSSS DG C +WD + G + D N PVS V S
Sbjct: 151 LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS-GQCLKTLIDDDNPPVSFVKFSP- 208
Query: 431 NGE--IASVLQTT-----KTGGSILRLHTINAQLITSLASELRITSVTFSNAPEGVSQNV 483
NG+ +A+ L T + G L+ +T + + + +T +
Sbjct: 209 NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW----------- 257
Query: 484 IVTGHSDGTIQLW 496
IV+G D + +W
Sbjct: 258 IVSGSEDNLVYIW 270
Score = 32.3 bits (72), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 482 NVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWES 541
N+IV+G D ++++W L TL + + PV AV ++ D + +S+ +GL IW++
Sbjct: 126 NLIVSGSFDESVRIWDVKTGKCLKTLPAH-SDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 184
Query: 542 SS 543
+S
Sbjct: 185 AS 186
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 39/91 (42%), Gaps = 24/91 (26%)
Query: 374 HSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGE 433
H + VT L F ++SS+DGT LWD+ T +IR +
Sbjct: 361 HQSAVTCLQFNKNF--VITSSDDGTVKLWDLKTGEFIRNLV------------------- 399
Query: 434 IASVLQTTKTGGSILRLHTINAQLITSLASE 464
L++ +GG + R+ N +L+ ++ S
Sbjct: 400 ---TLESGGSGGVVWRIRASNTKLVCAVGSR 427
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 44/198 (22%), Positives = 80/198 (40%), Gaps = 32/198 (16%)
Query: 371 LLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINT-------IGYIREIPCV--DPNTP 421
L GH++ V ++L VS S D T +WDI T +G++ + CV D
Sbjct: 195 LYGHTSTVRCMHLHE--KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRV 252
Query: 422 VS---HVTMSETNGEIASVLQTTKTGGSILRLHTINAQLI----TSLASELRITSVTFSN 474
VS + + E + L T + G R++++ I SL + +R+ V N
Sbjct: 253 VSGAYDFMVKVWDPETETCLHTLQ--GHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGN 310
Query: 475 APEGVS------------QNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSC 522
++ N++V+G++D T+++W L TL
Sbjct: 311 CIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF 370
Query: 523 DSQHLYASNTEGLVIIWE 540
+ + S+ +G V +W+
Sbjct: 371 NKNFVITSSDDGTVKLWD 388
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 47/210 (22%), Positives = 94/210 (44%), Gaps = 31/210 (14%)
Query: 340 WLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTC 399
WL +S + L+ + A K E + GH ++D+ + ++ VS+S+D T
Sbjct: 40 WLASSSADKLIKIW--GAYDGKFE-----KTISGHKLGISDVAWSSDSNLLVSASDDKTL 92
Query: 400 LLWDINT-------IGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHT 452
+WD+++ G+ + C + N P S++ +S + E + KTG + L T
Sbjct: 93 KIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIVSGSFDESVRIWD-VKTG---MCLKT 147
Query: 453 INAQLITSLASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVA 512
+ A +++V F+ ++IV+ DG ++W L TL +
Sbjct: 148 LPAH-------SDPVSAVHFNR-----DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 195
Query: 513 LPVIAVTYSCDSQHLYASNTEGLVIIWESS 542
PV V +S + +++ A+ + + +W+ S
Sbjct: 196 PPVSFVKFSPNGKYILAATLDNTLKLWDYS 225
Score = 32.7 bits (73), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 57/133 (42%), Gaps = 20/133 (15%)
Query: 371 LLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSET 430
L HS V+ ++ S+ VSSS DG C +WD + G + D N PVS V S
Sbjct: 148 LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS-GQCLKTLIDDDNPPVSFVKFSP- 205
Query: 431 NGE--IASVLQTT-----KTGGSILRLHTINAQLITSLASELRITSVTFSNAPEGVSQNV 483
NG+ +A+ L T + G L+ +T + + + +T +
Sbjct: 206 NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW----------- 254
Query: 484 IVTGHSDGTIQLW 496
IV+G D + +W
Sbjct: 255 IVSGSEDNMVYIW 267
Score = 32.0 bits (71), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 482 NVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWES 541
N+IV+G D ++++W L TL + + PV AV ++ D + +S+ +GL IW++
Sbjct: 123 NLIVSGSFDESVRIWDVKTGMCLKTLPAH-SDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 181
Query: 542 SS 543
+S
Sbjct: 182 AS 183
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 46/210 (21%), Positives = 92/210 (43%), Gaps = 31/210 (14%)
Query: 340 WLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTC 399
WL +S + L+ + A K E + GH ++D+ + ++ VS+S+D T
Sbjct: 40 WLASSSADKLIKIW--GAYDGKFE-----KTISGHKLGISDVAWSSDSNLLVSASDDKTL 92
Query: 400 LLWDINT-------IGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHT 452
+WD+++ G+ + C + N P S++ +S + E + KTG + L
Sbjct: 93 KIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIVSGSFDESVRIWD-VKTGKCLKTLP- 149
Query: 453 INAQLITSLASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVA 512
A +++V F+ ++IV+ DG ++W L TL +
Sbjct: 150 ---------AHSDPVSAVHFNR-----DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 195
Query: 513 LPVIAVTYSCDSQHLYASNTEGLVIIWESS 542
PV V +S + +++ A+ + + +W+ S
Sbjct: 196 PPVSFVKFSPNGKYILAATLDNTLKLWDYS 225
Score = 32.3 bits (72), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 482 NVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWES 541
N+IV+G D ++++W L TL + + PV AV ++ D + +S+ +GL IW++
Sbjct: 123 NLIVSGSFDESVRIWDVKTGKCLKTLPAH-SDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 181
Query: 542 SS 543
+S
Sbjct: 182 AS 183
Score = 32.3 bits (72), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 57/133 (42%), Gaps = 20/133 (15%)
Query: 371 LLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSET 430
L HS V+ ++ S+ VSSS DG C +WD + G + D N PVS V S
Sbjct: 148 LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS-GQCLKTLIDDDNPPVSFVKFSP- 205
Query: 431 NGE--IASVLQTT-----KTGGSILRLHTINAQLITSLASELRITSVTFSNAPEGVSQNV 483
NG+ +A+ L T + G L+ +T + + + +T +
Sbjct: 206 NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW----------- 254
Query: 484 IVTGHSDGTIQLW 496
IV+G D + +W
Sbjct: 255 IVSGSEDNLVYIW 267
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 46/210 (21%), Positives = 92/210 (43%), Gaps = 31/210 (14%)
Query: 340 WLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTC 399
WL +S + L+ + A K E + GH ++D+ + ++ VS+S+D T
Sbjct: 40 WLASSSADKLIKIW--GAYDGKFE-----KTISGHKLGISDVAWSSDSNLLVSASDDKTL 92
Query: 400 LLWDINT-------IGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHT 452
+WD+++ G+ + C + N P S++ +S + E + KTG + L
Sbjct: 93 KIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIVSGSFDESVRIWD-VKTGKCLKTLP- 149
Query: 453 INAQLITSLASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVA 512
A +++V F+ ++IV+ DG ++W L TL +
Sbjct: 150 ---------AHSDPVSAVHFNR-----DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 195
Query: 513 LPVIAVTYSCDSQHLYASNTEGLVIIWESS 542
PV V +S + +++ A+ + + +W+ S
Sbjct: 196 PPVSFVKFSPNGKYILAATLDNTLKLWDYS 225
Score = 32.3 bits (72), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 57/133 (42%), Gaps = 20/133 (15%)
Query: 371 LLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSET 430
L HS V+ ++ S+ VSSS DG C +WD + G + D N PVS V S
Sbjct: 148 LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS-GQCLKTLIDDDNPPVSFVKFSP- 205
Query: 431 NGE--IASVLQTT-----KTGGSILRLHTINAQLITSLASELRITSVTFSNAPEGVSQNV 483
NG+ +A+ L T + G L+ +T + + + +T +
Sbjct: 206 NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW----------- 254
Query: 484 IVTGHSDGTIQLW 496
IV+G D + +W
Sbjct: 255 IVSGSEDNLVYIW 267
Score = 32.3 bits (72), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 482 NVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWES 541
N+IV+G D ++++W L TL + + PV AV ++ D + +S+ +GL IW++
Sbjct: 123 NLIVSGSFDESVRIWDVKTGKCLKTLPAH-SDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 181
Query: 542 SS 543
+S
Sbjct: 182 AS 183
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 47/210 (22%), Positives = 94/210 (44%), Gaps = 31/210 (14%)
Query: 340 WLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTC 399
WL +S + L+ + A K E + GH ++D+ + ++ VS+S+D T
Sbjct: 40 WLASSSADKLIKIW--GAYDGKFE-----KTISGHKLGISDVAWSSDSNLLVSASDDKTL 92
Query: 400 LLWDINT-------IGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHT 452
+WD+++ G+ + C + N P S++ +S + E + KTG + L T
Sbjct: 93 KIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIVSGSFDESVRIWD-VKTG---MCLKT 147
Query: 453 INAQLITSLASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVA 512
+ A +++V F+ ++IV+ DG ++W L TL +
Sbjct: 148 LPAH-------SDPVSAVHFNR-----DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 195
Query: 513 LPVIAVTYSCDSQHLYASNTEGLVIIWESS 542
PV V +S + +++ A+ + + +W+ S
Sbjct: 196 PPVSFVKFSPNGKYILAATLDNDLKLWDYS 225
Score = 32.3 bits (72), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 482 NVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWES 541
N+IV+G D ++++W L TL + + PV AV ++ D + +S+ +GL IW++
Sbjct: 123 NLIVSGSFDESVRIWDVKTGMCLKTLPAH-SDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 181
Query: 542 SS 543
+S
Sbjct: 182 AS 183
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 56/133 (42%), Gaps = 20/133 (15%)
Query: 371 LLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSET 430
L HS V+ ++ S+ VSSS DG C +WD + G + D N PVS V S
Sbjct: 148 LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS-GQCLKTLIDDDNPPVSFVKFSP- 205
Query: 431 NGE--IASVLQT-----TKTGGSILRLHTINAQLITSLASELRITSVTFSNAPEGVSQNV 483
NG+ +A+ L + G L+ +T + + + +T +
Sbjct: 206 NGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW----------- 254
Query: 484 IVTGHSDGTIQLW 496
IV+G D + +W
Sbjct: 255 IVSGSEDNMVYIW 267
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 22/39 (56%)
Query: 368 PTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINT 406
P L+GH A VTD+ + +S+S DGT LW+ T
Sbjct: 171 PRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGT 209
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 32.7 bits (73), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 22/39 (56%)
Query: 368 PTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINT 406
P L+GH A VTD+ + +S+S DGT LW+ T
Sbjct: 174 PRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGT 212
>pdb|1YYC|A Chain A, Solution Structure Of A Putative Late Embryogenesis
Abundant (Lea) Protein At2g46140.1
Length = 174
Score = 32.3 bits (72), Expect = 0.63, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 35/71 (49%), Gaps = 11/71 (15%)
Query: 368 PTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDIN---TIGYIREIPCV-DPNTPVS 423
P L+G V D+ + +S+AVS +D C WDI+ IG +IP V D PVS
Sbjct: 102 PGSLVGSGTTVLDVPVKVAYSIAVSLMKD-MCTDWDIDYQLDIGLTFDIPVVGDITIPVS 160
Query: 424 HVTMSETNGEI 434
T GEI
Sbjct: 161 ------TQGEI 165
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 32.3 bits (72), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 65/160 (40%), Gaps = 15/160 (9%)
Query: 391 VSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVL--QTTKTGGSIL 448
++ S D TC+LWD+ T I P+ + V N A++ + T +
Sbjct: 174 ITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLW 233
Query: 449 RLHTINAQLITSLASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTL- 507
L + + T E I SV F P+G TG DGT +L+ + H L +
Sbjct: 234 DLRITSRAVRTYHGHEGDINSVKF--FPDG---QRFGTGSDDGTCRLFD-MRTGHQLQVY 287
Query: 508 ------NTNVALPVIAVTYSCDSQHLYASNTEGLVIIWES 541
N N V +V +S + L+A + G +W++
Sbjct: 288 NREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDT 327
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 47/216 (21%), Positives = 90/216 (41%), Gaps = 31/216 (14%)
Query: 345 SGNILVYEYELNAST-NKIEFCKPPTILLGHSACVTDLYLCAGFSVAV-SSSEDGTCLLW 402
S ++LV++Y + S + C P L GH L S + S+S+D T LW
Sbjct: 146 SSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLW 205
Query: 403 DINTIGYIREIPCVDPNTPVS-----------HVTMSETNGEIAS----VLQTTKTGGSI 447
DI+ + +E VD T + H+ G +A ++ T++ +
Sbjct: 206 DISAVP--KEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTS 263
Query: 448 LRLHTINAQLITSLASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTL 507
H+++A + ++F+ S+ ++ TG +D T+ LW L L
Sbjct: 264 KPSHSVDAHTA-------EVNCLSFN----PYSEFILATGSADKTVALWDLRNLKLKLHS 312
Query: 508 NTNVALPVIAVTYSCDSQHLYASN-TEGLVIIWESS 542
+ + V +S ++ + AS+ T+ + +W+ S
Sbjct: 313 FESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLS 348
>pdb|1YFQ|A Chain A, High Resolution S. Cerevisiae Bub3 Mitotic Checkpoint
Protein
Length = 342
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 502 AHLLTL-NTNVALPVIAVTYSCDSQHLYASNTEGLVIIWESSSHNRTPKF 550
H L L +TN+A PV ++ +S + LY + ++G++ W + + F
Sbjct: 240 CHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNF 289
>pdb|2I3T|A Chain A, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|C Chain C, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|E Chain E, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|G Chain G, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
Length = 341
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 502 AHLLTL-NTNVALPVIAVTYSCDSQHLYASNTEGLVIIWESSSHNRTPKF 550
H L L +TN+A PV ++ +S + LY + ++G++ W + + F
Sbjct: 240 CHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNF 289
>pdb|2I3S|A Chain A, Bub3 Complex With Bub1 Glebs Motif
pdb|2I3S|C Chain C, Bub3 Complex With Bub1 Glebs Motif
pdb|2I3S|E Chain E, Bub3 Complex With Bub1 Glebs Motif
Length = 349
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 502 AHLLTL-NTNVALPVIAVTYSCDSQHLYASNTEGLVIIWESSSHNRTPKF 550
H L L +TN+A PV ++ +S + LY + ++G++ W + + F
Sbjct: 240 CHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNF 289
>pdb|1U4C|A Chain A, Structure Of Spindle Checkpoint Protein Bub3
pdb|1U4C|B Chain B, Structure Of Spindle Checkpoint Protein Bub3
Length = 349
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 502 AHLLTL-NTNVALPVIAVTYSCDSQHLYASNTEGLVIIWESSSHNRTPKF 550
H L L +TN+A PV ++ +S + LY + ++G++ W + + F
Sbjct: 240 CHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNF 289
>pdb|2LLE|A Chain A, Computational Design Of An Eight-Stranded
(BetaALPHA)-Barrel From Fragments Of Different Folds
Length = 234
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 6/64 (9%)
Query: 403 DINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTI---NAQLIT 459
++N I I+EI +DPN + + + G+ A V++ K G ++T N LIT
Sbjct: 37 EMNGIDAIKEIMKIDPN---AKIIVCSAMGQQAMVIEAIKAGAKGFIVNTAAVENPSLIT 93
Query: 460 SLAS 463
LA
Sbjct: 94 QLAQ 97
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 46/216 (21%), Positives = 88/216 (40%), Gaps = 31/216 (14%)
Query: 345 SGNILVYEYELNASTNKIE-FCKPPTILLGHSACVTDLYLCAGFS-VAVSSSEDGTCLLW 402
S ++LV++Y + S + C+P L GH L + +S+S+D T LW
Sbjct: 150 SSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLW 209
Query: 403 DINTIGYIREIPCVDPNTPVS-----------HVTMSETNGEIAS----VLQTTKTGGSI 447
DIN +E +D + H+ G +A ++ T+ +
Sbjct: 210 DINATP--KEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTS 267
Query: 448 LRLHTINAQLITSLASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTL 507
HT++A + ++F+ S+ ++ TG +D T+ LW L L
Sbjct: 268 KPSHTVDAHTA-------EVNCLSFN----PYSEFILATGSADKTVALWDLRNLKLKLHS 316
Query: 508 NTNVALPVIAVTYSCDSQHLYASN-TEGLVIIWESS 542
+ + V +S ++ + AS+ T+ + +W+ S
Sbjct: 317 FESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS 352
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 345 SGNILVYEYELN-ASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAV-SSSEDGTCLLW 402
S ++LV++Y + A + C P L GH L + S + S+S+D T LW
Sbjct: 148 SSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLW 207
Query: 403 DIN 405
DIN
Sbjct: 208 DIN 210
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 28.9 bits (63), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 46/216 (21%), Positives = 88/216 (40%), Gaps = 31/216 (14%)
Query: 345 SGNILVYEYELNASTNKIE-FCKPPTILLGHSACVTDLYLCAGFS-VAVSSSEDGTCLLW 402
S ++LV++Y + S + C+P L GH L + +S+S+D T LW
Sbjct: 152 SSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLW 211
Query: 403 DINTIGYIREIPCVDPNTPVS-----------HVTMSETNGEIAS----VLQTTKTGGSI 447
DIN +E +D + H+ G +A ++ T+ +
Sbjct: 212 DINATP--KEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTS 269
Query: 448 LRLHTINAQLITSLASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTL 507
HT++A + ++F+ S+ ++ TG +D T+ LW L L
Sbjct: 270 KPSHTVDAHTA-------EVNCLSFN----PYSEFILATGSADKTVALWDLRNLKLKLHS 318
Query: 508 NTNVALPVIAVTYSCDSQHLYASN-TEGLVIIWESS 542
+ + V +S ++ + AS+ T+ + +W+ S
Sbjct: 319 FESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS 354
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 46/216 (21%), Positives = 88/216 (40%), Gaps = 31/216 (14%)
Query: 345 SGNILVYEYELNASTNKIE-FCKPPTILLGHSACVTDLYLCAGFS-VAVSSSEDGTCLLW 402
S ++LV++Y + S + C+P L GH L + +S+S+D T LW
Sbjct: 154 SSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLW 213
Query: 403 DINTIGYIREIPCVDPNTPVS-----------HVTMSETNGEIAS----VLQTTKTGGSI 447
DIN +E +D + H+ G +A ++ T+ +
Sbjct: 214 DINATP--KEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTS 271
Query: 448 LRLHTINAQLITSLASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTL 507
HT++A + ++F+ S+ ++ TG +D T+ LW L L
Sbjct: 272 KPSHTVDAHTA-------EVNCLSFN----PYSEFILATGSADKTVALWDLRNLKLKLHS 320
Query: 508 NTNVALPVIAVTYSCDSQHLYASN-TEGLVIIWESS 542
+ + V +S ++ + AS+ T+ + +W+ S
Sbjct: 321 FESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS 356
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 345 SGNILVYEYELN-ASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAV-SSSEDGTCLLW 402
S ++LV++Y + A + C P L GH L + S + S+S+D T LW
Sbjct: 148 SSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLW 207
Query: 403 DIN 405
DIN
Sbjct: 208 DIN 210
>pdb|4B91|A Chain A, Crystal Structure Of Truncated Human Crmp-5
pdb|4B91|B Chain B, Crystal Structure Of Truncated Human Crmp-5
pdb|4B92|A Chain A, Crystal Structure Of Truncated Human Crmp-5 Soaked With Zn
pdb|4B92|B Chain B, Crystal Structure Of Truncated Human Crmp-5 Soaked With Zn
Length = 484
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Query: 431 NGEIASVLQTTKTGGSILRLHTINAQLITSLASELRITSVTFSNAPEGVS 480
+ E+ VL K G+I R+H N +L+ A E +T PEG+
Sbjct: 172 DSELYQVLHACKDIGAIARVHAENGELVAEGAKEALDLGIT---GPEGIE 218
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 54/139 (38%), Gaps = 17/139 (12%)
Query: 370 ILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSE 429
L GH V D L S +S S DGT +W+I T ++ C ++
Sbjct: 1045 FLRGHQETVKDFRLLKN-SRLLSWSFDGTVKVWNIITGNKEKDFVCHQGTVLSCDISHDA 1103
Query: 430 TNGEIASVLQTTK--TGGSILRLHTINAQLITSLASELRITSVTFSNAPEGVSQNVIVTG 487
T S +T K + +L LH ELR + + V ++ TG
Sbjct: 1104 TKFSSTSADKTAKIWSFDLLLPLH------------ELRGHNGCVRCSAFSVDSTLLATG 1151
Query: 488 HSDGTIQLW--SGYKLAHL 504
+G I++W S +L HL
Sbjct: 1152 DDNGEIRIWNVSNGELLHL 1170
>pdb|4B90|A Chain A, Crystal Structure Of Wt Human Crmp-5
pdb|4B90|B Chain B, Crystal Structure Of Wt Human Crmp-5
Length = 586
Score = 28.9 bits (63), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Query: 431 NGEIASVLQTTKTGGSILRLHTINAQLITSLASELRITSVTFSNAPEGV 479
+ E+ VL K G+I R+H N +L+ A E +T PEG+
Sbjct: 193 DSELYQVLHACKDIGAIARVHAENGELVAEGAKEALDLGIT---GPEGI 238
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,417,996
Number of Sequences: 62578
Number of extensions: 733787
Number of successful extensions: 1826
Number of sequences better than 100.0: 61
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 1610
Number of HSP's gapped (non-prelim): 187
length of query: 556
length of database: 14,973,337
effective HSP length: 104
effective length of query: 452
effective length of database: 8,465,225
effective search space: 3826281700
effective search space used: 3826281700
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)