RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10778
(556 letters)
>gnl|CDD|214982 smart01026, Beach, Beige/BEACH domain. The BEACH domain was
described in the BEIGE protein (D1035670) and in the
highly homologous CHS protein. The BEACH domain is
usually followed by a series of WD repeats. The function
of the BEACH domain is unknown.
Length = 280
Score = 334 bits (859), Expect = e-112
Identities = 116/195 (59%), Positives = 144/195 (73%), Gaps = 2/195 (1%)
Query: 9 NQEPYHYGSHYSNSGTVLHFLVRIPPFTSMFLNYQDNNFDLPDRTFHNLATTWRLTSSES 68
+ P+HYG+HYS++G VL++L+R+ PFT++FL Q FD DR FH++A TWR S ES
Sbjct: 84 DIPPFHYGTHYSSAGIVLYYLIRLEPFTTLFLQLQGGRFDHADRLFHSVAATWRSASLES 143
Query: 69 TTDVKELIPELFYLADILVNNEGFDFGVRQNGQRVDSVILPPWA-SDPRTFIMVHRQSLE 127
TDVKELIPE FYL + LVN GFDFG RQ+G+ VD V LPPWA P FI HR++LE
Sbjct: 144 MTDVKELIPEFFYLPEFLVNINGFDFGTRQDGEDVDDVELPPWAKGSPEEFIRKHREALE 203
Query: 128 SELVSENLPHWIDLVFGYKQSGKAAVDAINVFHPATYYG-FDIAAIPDPLERTAWETMIR 186
SE VS++L HWIDL+FGYKQ GK AV+A+NVFHP TY G D+ +I DP+ER A E I
Sbjct: 204 SEYVSQHLHHWIDLIFGYKQRGKEAVEALNVFHPLTYEGAVDLDSIEDPVERKALEGQIH 263
Query: 187 TYGQTPRQLFKSAHP 201
+GQTP+QLFK HP
Sbjct: 264 NFGQTPKQLFKEPHP 278
>gnl|CDD|216896 pfam02138, Beach, Beige/BEACH domain.
Length = 274
Score = 292 bits (749), Expect = 1e-95
Identities = 100/193 (51%), Positives = 130/193 (67%), Gaps = 3/193 (1%)
Query: 9 NQEPYHYGSHYSNSGTVLHFLVRIPPFTSMFLNYQDNNFDLPDRTFHNLATTWRLTSSES 68
P+HYGSHYS+ G+VLH+L+R+ PFT++ + Q FD DR F ++ W+ SES
Sbjct: 83 VGPPFHYGSHYSSPGSVLHYLIRLEPFTTLHIELQGGKFDHADRLFSSIEEAWKS-VSES 141
Query: 69 TTDVKELIPELFYLADILVNNEGFDFGVRQNGQRVDSVILPPWASDPRTFIMVHRQSLES 128
DVKELIPE FYL + L N FD G R +G++VD V LPPWA P F+ +R++LES
Sbjct: 142 MNDVKELIPEFFYLPEFLKNINNFDLGKR-DGEKVDDVELPPWAKSPEEFVYKNRKALES 200
Query: 129 ELVSENLPHWIDLVFGYKQSGKAAVDAINVFHPATYYGFDIAAIPDPLERTAWETMIRTY 188
+ VSENL +WIDL+FGYKQ G+ A++A NVFHP TY + I DP+ER A E I +
Sbjct: 201 DYVSENLHNWIDLIFGYKQRGEEAIEAKNVFHPLTYEDI-VDKIKDPVEREAIEAQISNF 259
Query: 189 GQTPRQLFKSAHP 201
GQTP+QLF HP
Sbjct: 260 GQTPKQLFTEPHP 272
>gnl|CDD|100117 cd06071, Beach, BEACH (Beige and Chediak-Higashi) domains,
implicated in membrane trafficking, are present in a
family of proteins conserved throughout eukaryotes. This
group contains human lysosomal trafficking regulator
(LYST), LPS-responsive and beige-like anchor (LRBA) and
neurobeachin. Disruption of LYST leads to
Chediak-Higashi syndrome, characterized by severe
immunodeficiency, albinism, poor blood coagulation and
neurologic problems. Neurobeachin is a candidate gene
linked to autism. LBRA seems to be upregulated in
several cancer types. It has been shown that the BEACH
domain itself is important for the function of these
proteins.
Length = 275
Score = 276 bits (709), Expect = 1e-89
Identities = 102/192 (53%), Positives = 133/192 (69%), Gaps = 3/192 (1%)
Query: 10 QEPYHYGSHYSNSGTVLHFLVRIPPFTSMFLNYQDNNFDLPDRTFHNLATTWRLTSSEST 69
P+HYGSHYSN VL++LVR+ PFT++ L+ Q +FD DR F+++ ++WR ++SE+
Sbjct: 85 DPPFHYGSHYSNPAIVLYYLVRLEPFTTLHLSLQGGHFDAADRLFNSIPSSWR-SASENP 143
Query: 70 TDVKELIPELFYLADILVNNEGFDFGVRQNGQRVDSVILPPWASDPRTFIMVHRQSLESE 129
+DVKELIPE +YL + +N FDFG Q+G++V+ V LPPWA P FI HR++LESE
Sbjct: 144 SDVKELIPEFYYLPEFFLNINKFDFGK-QDGEKVNDVELPPWAKSPEEFIRKHREALESE 202
Query: 130 LVSENLPHWIDLVFGYKQSGKAAVDAINVFHPATYYGFDIAAIPDPLERTAWETMIRTYG 189
VS+NL HWIDL+FGYKQ G+ AV A NVFHP TY G D +ER A E I +G
Sbjct: 203 YVSKNLHHWIDLIFGYKQRGEEAVKAKNVFHPLTYEGSVDLDSID-VEREAIEAQINNFG 261
Query: 190 QTPRQLFKSAHP 201
QTP QLF HP
Sbjct: 262 QTPVQLFTKPHP 273
>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic
proteins that cover a wide variety of functions
including adaptor/regulatory modules in signal
transduction, pre-mRNA processing and cytoskeleton
assembly; typically contains a GH dipeptide 11-24
residues from its N-terminus and the WD dipeptide at its
C-terminus and is 40 residues long, hence the name WD40;
between GH and WD lies a conserved core; serves as a
stable propeller-like platform to which proteins can
bind either stably or reversibly; forms a propeller-like
structure with several blades where each blade is
composed of a four-stranded anti-parallel b-sheet;
instances with few detectable copies are hypothesized to
form larger structures by dimerization; each WD40
sequence repeat forms the first three strands of one
blade and the last strand in the next blade; the last
C-terminal WD40 repeat completes the blade structure of
the first WD40 repeat to create the closed ring
propeller-structure; residues on the top and bottom
surface of the propeller are proposed to coordinate
interactions with other proteins and/or small ligands; 7
copies of the repeat are present in this alignment.
Length = 289
Score = 62.0 bits (151), Expect = 1e-10
Identities = 56/213 (26%), Positives = 88/213 (41%), Gaps = 26/213 (12%)
Query: 334 PDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSS 393
PD L G G I V++ E + L GH+ V D+ A + S
Sbjct: 19 PDGKLLATGSGDGTIKVWDLETG---------ELLRTLKGHTGPVRDVAASADGTYLASG 69
Query: 394 SEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTI 453
S D T LWD+ T +R + VS V S +G I S ++ +I
Sbjct: 70 SSDKTIRLWDLETGECVRTLTGHTS--YVSSVAFS-PDGRILS---SSSRDKTIKVWDVE 123
Query: 454 NAQLITSLASELR-ITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGY--KLAHLLTLNTN 510
+ +T+L + SV FS + + DGTI+LW K LT +T
Sbjct: 124 TGKCLTTLRGHTDWVNSVAFS-----PDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTG 178
Query: 511 VALPVIAVTYSCDSQHLYASNTEGLVIIWESSS 543
V +V +S D + L +S+++G + +W+ S+
Sbjct: 179 ---EVNSVAFSPDGEKLLSSSSDGTIKLWDLST 208
Score = 54.3 bits (131), Expect = 5e-08
Identities = 41/174 (23%), Positives = 76/174 (43%), Gaps = 15/174 (8%)
Query: 369 TILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMS 428
T L GH+ V + + SSS+DGT LWD+ T + + V+ V S
Sbjct: 129 TTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLT--GHTGEVNSVAFS 186
Query: 429 ETNGEIASVLQTTKTGGSILRLHTINA-QLITSLAS-ELRITSVTFSNAPEGVSQNVIVT 486
++ S + ++L ++ + + +L E + SV FS ++ +
Sbjct: 187 PDGEKLLSS-----SSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSP-----DGYLLAS 236
Query: 487 GHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWE 540
G DGTI++W + TL + V ++ +S D + L + + +G + IW+
Sbjct: 237 GSEDGTIRVWDLRTGECVQTL-SGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289
Score = 52.0 bits (125), Expect = 3e-07
Identities = 40/177 (22%), Positives = 73/177 (41%), Gaps = 19/177 (10%)
Query: 371 LLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSET 430
L GH+ VT + + + S DGT +WD+ T +R PV V S
Sbjct: 5 LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRT--LKGHTGPVRDVAASAD 62
Query: 431 NGEIASVLQTTKTGGSILRLHTINA-QLITSLAS-ELRITSVTFSNAPEGVSQNVIVTGH 488
+AS + +RL + + + +L ++SV FS ++ +
Sbjct: 63 GTYLASG-----SSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSP-----DGRILSSSS 112
Query: 489 SDGTIQLWSG--YKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWESSS 543
D TI++W K L +T+ V +V +S D + +S+ +G + +W+ +
Sbjct: 113 RDKTIKVWDVETGKCLTTLRGHTD---WVNSVAFSPDGTFVASSSQDGTIKLWDLRT 166
>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction
only].
Length = 466
Score = 48.9 bits (115), Expect = 4e-06
Identities = 41/178 (23%), Positives = 70/178 (39%), Gaps = 9/178 (5%)
Query: 366 KPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHV 425
L GHS+ V + + S S DGT LWD+ T + + PVS +
Sbjct: 275 SLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSL 334
Query: 426 TMSETNGEIASVLQTTKTGGSILRLHTINAQLITSLASELRITSVTFSNAPEGVSQNVIV 485
+ S + S T + L T S + SV+FS V+
Sbjct: 335 SFSPDGSLLVSGGSDDGT-IRLWDLRTGKPLKTLEGHS--NVLSVSFSP-----DGRVVS 386
Query: 486 TGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWESSS 543
+G +DGT++LW LL V ++ +S D + L + +++ + +W+ +
Sbjct: 387 SGSTDGTVRLWD-LSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443
Score = 47.0 bits (110), Expect = 2e-05
Identities = 46/208 (22%), Positives = 81/208 (38%), Gaps = 9/208 (4%)
Query: 338 TLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDG 397
L LG + IL+ ++ + + +L GH +T + + +S S DG
Sbjct: 30 LLSLGSSESGILLLALLSDSLVSLPDL--SSLLLRGHEDSITSIAFSPDGELLLSGSSDG 87
Query: 398 TCLLWDINT-IGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTINAQ 456
T LWD++ I+ + + ++ S I + + L T
Sbjct: 88 TIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKL 147
Query: 457 LITSLASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVI 516
+ T +TS+ FS + + DGTI+LW L TL + PV
Sbjct: 148 IRTLEGHSESVTSLAFSPD----GKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTD-PVS 202
Query: 517 AVTYSCDSQHLYASNTE-GLVIIWESSS 543
++ +S D L AS + G + +W+ S+
Sbjct: 203 SLAFSPDGGLLIASGSSDGTIRLWDLST 230
>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat.
Length = 39
Score = 33.9 bits (78), Expect = 0.009
Identities = 13/39 (33%), Positives = 19/39 (48%)
Query: 365 CKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWD 403
K L GH+ VT + ++ S S+DGT +WD
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
Score = 29.6 bits (67), Expect = 0.33
Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 5/32 (15%)
Query: 466 RITSVTFSNAPEGVSQNVIVTGHSDGTIQLWS 497
+TSV FS N++ +G DGT+++W
Sbjct: 13 PVTSVAFSP-----DGNLLASGSDDGTVRVWD 39
>gnl|CDD|197651 smart00320, WD40, WD40 repeats. Note that these repeats are
permuted with respect to the structural repeats (blades)
of the beta propeller domain.
Length = 40
Score = 33.8 bits (78), Expect = 0.010
Identities = 13/38 (34%), Positives = 17/38 (44%)
Query: 366 KPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWD 403
+ L GH+ VT + S S+DGT LWD
Sbjct: 3 ELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
Score = 30.4 bits (69), Expect = 0.20
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 5/32 (15%)
Query: 466 RITSVTFSNAPEGVSQNVIVTGHSDGTIQLWS 497
+TSV FS + +G DGTI+LW
Sbjct: 14 PVTSVAFSP-----DGKYLASGSDDGTIKLWD 40
>gnl|CDD|217535 pfam03401, TctC, Tripartite tricarboxylate transporter family
receptor. These probable extra-cytoplasmic solute
receptors are strongly overrepresented in several
beta-proteobacteria. This family, formerly known as Bug
- Bordetella uptake gene (bug) product - is a family of
bacterial tripartite tricarboxylate receptors of the
extracytoplasmic solute binding receptor-dependent
transporter group of families, distinct from the ABC and
TRAP-T families. The TctABC system has been
characterized in S. typhimurium, and TctC is the
extracytoplasmic tricarboxylate-binding receptor which
binds the transporters TctA and TctB, two integral
membrane proteins. Complete three-component systems are
found only in bacteria.
Length = 274
Score = 33.5 bits (77), Expect = 0.22
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 7/56 (12%)
Query: 304 LIRLKMSKELPATPVI---RPPLGATIATAT---TAPDCHTLWLGLTSGNILVYEY 353
+ MSK+L PVI +P G I APD +T+ LG T + + Y
Sbjct: 4 ALAQGMSKQL-GQPVIVENKPGAGGIIGADAVAKAAPDGYTILLGSTGLAVAPHLY 58
>gnl|CDD|187865 cd09734, Csb2_I-U, CRISPR/Cas system-associated protein Csb2.
CRISPR (Clustered Regularly Interspaced Short
Palindromic Repeats) and associated Cas proteins
comprise a system for heritable host defense by
prokaryotic cells against phage and other foreign DNA;
Duplicated RAMP domains; also known as GSU0054 family.
Length = 495
Score = 32.7 bits (74), Expect = 0.63
Identities = 17/58 (29%), Positives = 21/58 (36%), Gaps = 6/58 (10%)
Query: 50 PDRTFHNLATTWRLTSSESTTDVKELI-----PELFYLADILVNNEGFDFGVRQNGQR 102
P R F L TW L DV + P +F L LV N + V + R
Sbjct: 21 PWRIFQALVATWALKVDAEDKDVLNWLESLPEPPVFALPPALVANATRHY-VPRAWGR 77
>gnl|CDD|182837 PRK10918, PRK10918, phosphate ABC transporter periplasmic
substrate-binding protein PstS; Provisional.
Length = 346
Score = 32.1 bits (73), Expect = 0.66
Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 18/79 (22%)
Query: 111 WASDPRTFIMVHRQSLESELVSENLPHWIDLVFGYKQSGKAAVDAINVFHPATYYGFDIA 170
W TFI+VH+ + E +E L + D + YK K A D D A
Sbjct: 275 WPITSTTFILVHKDQKKPEQGAEVL-KFFD--WAYKNGAKQAND------------LDYA 319
Query: 171 AIPDPLE---RTAWETMIR 186
++PD + R AW+T I+
Sbjct: 320 SLPDSVVEQVRAAWKTNIK 338
>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional.
Length = 793
Score = 31.2 bits (70), Expect = 1.6
Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 8/75 (10%)
Query: 341 LGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCL 400
L S + VY Y+L K+ C ++GHS V+ + S VSSS D T
Sbjct: 633 LAFGSADHKVYYYDLR--NPKLPLCT----MIGHSKTVSYVRFVDS-STLVSSSTDNTLK 685
Query: 401 LWDIN-TIGYIREIP 414
LWD++ +I I E P
Sbjct: 686 LWDLSMSISGINETP 700
>gnl|CDD|151125 pfam10596, U6-snRNA_bdg, U6-snRNA interacting domain of PrP8. This
domain incorporates the interacting site for the
U6-snRNA as part of the U4/U6.U5 tri-snRNPs complex of
the spliceosome, and is the prime candidate for the role
of cofactor for the spliceosome's RNA core. The
essential spliceosomal protein Prp8 interacts with U5
and U6 snRNAs and with specific pre-mRNA sequences that
participate in catalysis. This close association with
crucial RNA sequences, together with extensive genetic
evidence, suggests that Prp8 could directly affect the
function of the catalytic core, perhaps acting as a
splicing cofactor.
Length = 160
Score = 29.8 bits (67), Expect = 2.0
Identities = 14/27 (51%), Positives = 16/27 (59%)
Query: 202 MNVKKLTPAQESRVEVIPNIRGLVWGS 228
M KKLT AQ S + IPN R +W S
Sbjct: 72 MKFKKLTNAQRSGLSQIPNRRFTLWWS 98
>gnl|CDD|234930 PRK01261, aroD, 3-dehydroquinate dehydratase; Provisional.
Length = 229
Score = 29.9 bits (67), Expect = 3.0
Identities = 16/68 (23%), Positives = 32/68 (47%), Gaps = 9/68 (13%)
Query: 268 TTLLHSYHKDKNTNLISSLN-VIGAGAGMI---C-WNE----CDNLIRLKMSKELPATPV 318
T L+ SYH + + N+ + L+ + + C +N+ D+L + M K+ P+
Sbjct: 120 TMLMVSYHTNNSDNMPAILDIMNEKNPDYVKVACNYNDNKKFVDDLQYILMKKDEKYKPI 179
Query: 319 IRPPLGAT 326
+ P+G
Sbjct: 180 VFIPMGRE 187
>gnl|CDD|222861 PHA02537, M, terminase endonuclease subunit; Provisional.
Length = 230
Score = 29.7 bits (67), Expect = 3.2
Identities = 17/66 (25%), Positives = 27/66 (40%), Gaps = 2/66 (3%)
Query: 112 ASDPRTFIMVHRQSLESELVSENLPHWIDLVFGYKQSGKAAVDAINVFHPATYYGFDIAA 171
A+D R + ++EL + LP ++ V G +G D +V + FDI
Sbjct: 41 AADRRALKGIQSIERKAELKRDLLPKYLPWVEGVLAAGAGYQD--DVLMTVMVWRFDIGD 98
Query: 172 IPDPLE 177
LE
Sbjct: 99 FDGALE 104
>gnl|CDD|235780 PRK06330, PRK06330, transcript cleavage factor/unknown domain
fusion protein; Validated.
Length = 718
Score = 30.1 bits (68), Expect = 3.6
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Query: 99 NGQRVDSVILPPWASDPRTFIMVHRQSLESELVSENLPHWIDLVFGYK 146
G +V IL PW +DP I+ SL+S+L E L + ++
Sbjct: 660 QGDKVCYTILGPWDADPDNKIL----SLKSKLAQEMLGKKVGDSVQFQ 703
>gnl|CDD|187764 cd09324, TDT_TehA, Tellurite-resistance/Dicarboxylate Transporter
(TDT) family includes TehA protein. This subfamily
includes Tellurite resistance protein TehA that belongs
to the C4-dicarboxylate transporter/malic acid transport
(TDT) protein family and is a homolog of plant Slow
Anion Channel-Associated 1 (SLAC1). The tehA gene
encodes an integral membrane protein that has been shown
to have efflux activity of quaternary ammonium
compounds. TehA protein of Escherichia coli functions as
a tellurite-resistance uptake permease.
Length = 301
Score = 29.5 bits (67), Expect = 3.8
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
Query: 292 GAGMICWNECDNLI--RLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNI 348
GAGM W + +I RL+ S LP P +RP LG +A A + +L L G +
Sbjct: 161 GAGMFSWLSLEPVILQRLRTSPPLP--PALRPTLGIQLAPAFV---GCSAYLSLNGGEV 214
>gnl|CDD|146355 pfam03677, UPF0137, Uncharacterized protein family (UPF0137). This
family includes GP6-D a virulence plasmid encoded
protein.
Length = 244
Score = 29.4 bits (66), Expect = 4.0
Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 22/87 (25%)
Query: 138 WIDLVFGYKQSGKAAVDAINVFHPATYYGFDIAAIPDPLERTAWETMIRTYGQTPRQLFK 197
WI LVFG K S A+ YY I +PD + ++++ P +
Sbjct: 108 WILLVFGTKSSAYNAL---------VYYELFI-TLPDKSLKLEFQSI-------PYK--- 147
Query: 198 SAHPMNVKKLTPAQESRVEVIPNIRGL 224
+A+ + +K + QE + +VI N RG
Sbjct: 148 AAYTLASRKGS--QEKKEDVIRNYRGE 172
>gnl|CDD|221994 pfam13230, GATase_4, Glutamine amidotransferases class-II. This
family captures members that are not found in pfam00310.
Length = 272
Score = 29.2 bits (66), Expect = 5.4
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 19 YSNSGTVLHFLVRIPPFTSMFLNYQDNNFDLPDRTFHNLATTWRLTSSESTTD 71
+++ T LH+LVR PPF + L +D + D T + +++ TD
Sbjct: 183 FAHCSTRLHYLVRRPPFGTAHLIDEDVSVDFAKVTTPEDRVA--VIATQPLTD 233
>gnl|CDD|234799 PRK00578, prfB, peptide chain release factor 2; Validated.
Length = 367
Score = 29.1 bits (66), Expect = 6.5
Identities = 14/26 (53%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 12 PYHYGSHYSNSGTVLHFLVRIPPFTS 37
PY YG S +G H LVRI PF S
Sbjct: 184 PYAYGYLKSETGV--HRLVRISPFDS 207
>gnl|CDD|233554 TIGR01739, tegu_FGAM_synt, herpesvirus tegument
protein/v-FGAM-synthase. This model describes a family
of large proteins of herpesvirues. The protein is
described variably as tegument protein or
phosphoribosylformylglycinamidine synthase
(FGAM-synthase). Most of the length of the protein shows
homology to eukaryotic FGAM-synthase. Functional
characterizations were not verified during construction
of this model.
Length = 1202
Score = 29.3 bits (66), Expect = 6.8
Identities = 16/70 (22%), Positives = 28/70 (40%), Gaps = 13/70 (18%)
Query: 424 HVTMSETNGEIASVLQTTKTGGSILRLHTINAQLITSLASELRITSVTFSNAPEGVSQNV 483
+++ + S+ + G S +RL ++ + L S V + V
Sbjct: 721 WLSLHPSYTLAGSIFEQI-LGLSFIRLPALSPVSLKKL----------LSALQTLVKEGV 769
Query: 484 IVTGH--SDG 491
IV+GH SDG
Sbjct: 770 IVSGHDVSDG 779
>gnl|CDD|204739 pfam11768, DUF3312, Protein of unknown function (DUF3312). This is
a eukaryotic family of uncharacterized proteins. This
family shows similarity to WD40 repeat proteins.
Length = 544
Score = 28.9 bits (65), Expect = 7.3
Identities = 18/93 (19%), Positives = 35/93 (37%), Gaps = 10/93 (10%)
Query: 285 SLNVIGAGAGMICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLT 344
++ G + C EC R KM + V PL + + + +PD L LG
Sbjct: 226 KVSKKGEPSADSCIYEC---ARNKMRR----VAVTSIPLRSQVCSCARSPDEEKLLLGCI 278
Query: 345 SGNILVYEYELNAS-TNKIEFCKPPTILLGHSA 376
++++Y+ + + P ++ H
Sbjct: 279 DSSLVLYDEHRGVTLLAQAAV--IPHLIAWHPD 309
>gnl|CDD|227505 COG5178, PRP8, U5 snRNP spliceosome subunit [RNA processing and
modification].
Length = 2365
Score = 29.2 bits (65), Expect = 8.1
Identities = 16/38 (42%), Positives = 18/38 (47%), Gaps = 8/38 (21%)
Query: 202 MNVKKLTPAQESRVEVIPNIRGLVWGS--------YVG 231
M KKLT AQ + IPN R +W S YVG
Sbjct: 1542 MKFKKLTNAQRMGLSQIPNRRFTLWWSPTINRANVYVG 1579
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.134 0.415
Gapped
Lambda K H
0.267 0.0774 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 27,809,394
Number of extensions: 2638847
Number of successful extensions: 2140
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2105
Number of HSP's successfully gapped: 35
Length of query: 556
Length of database: 10,937,602
Length adjustment: 102
Effective length of query: 454
Effective length of database: 6,413,494
Effective search space: 2911726276
Effective search space used: 2911726276
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (27.6 bits)