RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10778
(556 letters)
>d1t77a1 a.169.1.1 (A:2186-2489) Lipopolysaccharide-responsive and
beige-like anchor protein LRBA {Human (Homo sapiens)
[TaxId: 9606]}
Length = 304
Score = 263 bits (672), Expect = 2e-84
Identities = 93/194 (47%), Positives = 123/194 (63%), Gaps = 2/194 (1%)
Query: 9 NQEPYHYGSHYSNSGTVLHFLVRIPPFTSMFLNYQDNNFDLPDRTFHNLATTWRLTSSES 68
+HYG+HYS + VL +L+RI PFT+ FLN Q FD DRTF +++ WR S
Sbjct: 110 QVPKFHYGTHYSTASFVLAWLLRIEPFTTYFLNLQGGKFDHADRTFSSISRAWR-NSQRD 168
Query: 69 TTDVKELIPELFYLADILVNNEGFDFGVRQNGQRVDSVILPPWASDPRTFIMVHRQSLES 128
T+D+KELIPE +YL ++ VN ++ GV +G V V LPPWA F+ ++R +LES
Sbjct: 169 TSDIKELIPEFYYLPEMFVNFNNYNLGVMDDGTVVSDVELPPWAKTSEEFVHINRLALES 228
Query: 129 ELVSENLPHWIDLVFGYKQSGKAAVDAINVFHPATYYGF-DIAAIPDPLERTAWETMIRT 187
E VS L WIDL+FGYKQ G AV A+NVF+ TY G ++ +I DP+ R A E IR+
Sbjct: 229 EFVSCQLHQWIDLIFGYKQQGPEAVRALNVFYYLTYEGAVNLNSITDPVLREAVEAQIRS 288
Query: 188 YGQTPRQLFKSAHP 201
+GQTP QL HP
Sbjct: 289 FGQTPSQLLIEPHP 302
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G
protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}
Length = 340
Score = 54.4 bits (129), Expect = 2e-08
Identities = 18/133 (13%), Positives = 48/133 (36%), Gaps = 10/133 (7%)
Query: 366 KPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHV 425
GH + + + + + S+D TC L+D+ + + ++ V
Sbjct: 217 MCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSV 276
Query: 426 TMSETNGEIASVLQTTKTGGSILRLHTINAQLITSL-ASELRITSVTFSNAPEGVSQNVI 484
+ S++ + + + + A L + R++ + + +G +
Sbjct: 277 SFSKSGRLLLA----GYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVT--DDG---MAV 327
Query: 485 VTGHSDGTIQLWS 497
TG D +++W+
Sbjct: 328 ATGSWDSFLKIWN 340
Score = 52.8 bits (125), Expect = 4e-08
Identities = 28/166 (16%), Positives = 53/166 (31%), Gaps = 9/166 (5%)
Query: 374 HSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGE 433
H+ V L L + VS + D + LWD+ + + ++ +
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFT--GHESDINAICFFPNGNA 240
Query: 434 IASVLQTTKTGGSILRLHTINAQLITSLASELRITSVTFSNAPEGVSQNVIVTGHSDGTI 493
A+ T + ITSV+FS S +++ G+ D
Sbjct: 241 FATGSDD-ATCRLFDLRADQELMTYSHDNIICGITSVSFSK-----SGRLLLAGYDDFNC 294
Query: 494 QLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIW 539
+W K L + V + + D + + + + IW
Sbjct: 295 NVWDALKADRAGVLAGHDN-RVSCLGVTDDGMAVATGSWDSFLKIW 339
Score = 37.8 bits (86), Expect = 0.002
Identities = 13/79 (16%), Positives = 24/79 (30%), Gaps = 9/79 (11%)
Query: 325 ATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLC 384
I + + + L G N V++ +L GH V+ L +
Sbjct: 271 CGITSVSFSKSGRLLLAGYDDFNCNVWD---------ALKADRAGVLAGHDNRVSCLGVT 321
Query: 385 AGFSVAVSSSEDGTCLLWD 403
+ S D +W+
Sbjct: 322 DDGMAVATGSWDSFLKIWN 340
Score = 33.9 bits (76), Expect = 0.049
Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Query: 366 KPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHV 425
+ L GH A + ++ + VS+S+DG ++WD T + IP ++ V
Sbjct: 46 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPL--RSSWVMTC 103
Query: 426 TMS 428
+
Sbjct: 104 AYA 106
Score = 30.1 bits (66), Expect = 0.73
Identities = 9/86 (10%), Positives = 31/86 (36%), Gaps = 6/86 (6%)
Query: 466 RITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQ 525
+I ++ + + ++V+ DG + +W Y + + + V+ Y+
Sbjct: 57 KIYAMHWG--TDS---RLLVSASQDGKLIIWDSYTTNKVHAIPLR-SSWVMTCAYAPSGN 110
Query: 526 HLYASNTEGLVIIWESSSHNRTPKFL 551
++ + + I+ + +
Sbjct: 111 YVACGGLDNICSIYNLKTREGNVRVS 136
>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor
acetylhydrolase IB subunit alpha {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 317
Score = 52.1 bits (123), Expect = 8e-08
Identities = 31/194 (15%), Positives = 66/194 (34%), Gaps = 21/194 (10%)
Query: 362 IEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIP------- 414
++ GH V + ++ S S D T +W + T E+
Sbjct: 130 VQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVE 189
Query: 415 CVDPNTPVSHVTMSETNGEIASV-------LQTTKTGGSILRLHTINAQLITSL-ASELR 466
C+ S+ ++SE G L + +I + +L +
Sbjct: 190 CISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNW 249
Query: 467 ITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQH 526
+ V F + I++ D T+++W + TLN + V ++ + + +
Sbjct: 250 VRGVLFHS-----GGKFILSCADDKTLRVWDYKNKRCMKTLNAHEH-FVTSLDFHKTAPY 303
Query: 527 LYASNTEGLVIIWE 540
+ + + V +WE
Sbjct: 304 VVTGSVDQTVKVWE 317
Score = 37.8 bits (86), Expect = 0.003
Identities = 34/180 (18%), Positives = 63/180 (35%), Gaps = 11/180 (6%)
Query: 371 LLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSET 430
L GH + VT + FSV VS+SED T +WD T + R + V ++ +
Sbjct: 13 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKG--HTDSVQDISFDHS 70
Query: 431 NGEIASVLQTTKTGGSILRLHTINAQLITSLASELRITSVTFSNAPEGVSQNVIVTGHSD 490
+AS + + S+ + + IV+ D
Sbjct: 71 GKLLASCSADMTIKLWDFQGFECIRTMHG--------HDHNVSSVSIMPNGDHIVSASRD 122
Query: 491 GTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWESSSHNRTPKF 550
TI++W + T + V V + D + + + + V +W ++ +
Sbjct: 123 KTIKMWEVQTGYCVKTFTGHRE-WVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAEL 181
Score = 33.2 bits (74), Expect = 0.079
Identities = 12/70 (17%), Positives = 21/70 (30%), Gaps = 9/70 (12%)
Query: 334 PDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSS 393
+ + V++Y+ + L H VT L V+
Sbjct: 257 SGGKFILSCADDKTLRVWDYKNK---------RCMKTLNAHEHFVTSLDFHKTAPYVVTG 307
Query: 394 SEDGTCLLWD 403
S D T +W+
Sbjct: 308 SVDQTVKVWE 317
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 388
Score = 45.6 bits (106), Expect = 9e-06
Identities = 31/174 (17%), Positives = 53/174 (30%), Gaps = 14/174 (8%)
Query: 334 PDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSS 393
D + G + V++ E +++ GH V + VS
Sbjct: 215 GDGKYIAAGSLDRAVRVWDSETGFLVERLD--SENESGTGHKDSVYSVVFTRDGQSVVSG 272
Query: 394 SEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASV--------LQTTKTGG 445
S D + LW++ PN+ VT + SV + +
Sbjct: 273 SLDRSVKLWNLQNANNKS--DSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDR 330
Query: 446 SILRLHTINAQLITSL-ASELRITSVTFSNAPE-GVSQNVIVTGHSDGTIQLWS 497
+L + + L + SV +N G NV TG D ++W
Sbjct: 331 GVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWK 384
Score = 32.8 bits (73), Expect = 0.091
Identities = 24/168 (14%), Positives = 51/168 (30%), Gaps = 21/168 (12%)
Query: 252 KLVPLRTNDVFGLAKFTTLLHSYHKDKNTNLISSLN----VIGAGAGMICWNECDNLIRL 307
++ T + + HKD +++ + + V G+ + N
Sbjct: 230 RVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNK 289
Query: 308 KMSKELPATPVIRPPLGAT--IATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFC 365
SK + +G + + T + + G +L ++ +
Sbjct: 290 SDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWD---------KKSG 340
Query: 366 KPPTILLGHSACVTDLYLCAGFSVA------VSSSEDGTCLLWDINTI 407
P +L GH V + + G S+ + S D +W I
Sbjct: 341 NPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 388
>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 393
Score = 42.5 bits (98), Expect = 8e-05
Identities = 22/174 (12%), Positives = 52/174 (29%), Gaps = 20/174 (11%)
Query: 369 TILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTI-----------GYIREIPCVD 417
H A + + C F VS S DG +WD + ++ +
Sbjct: 8 NAGKAHDADIFSVSACNSF--TVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHH 65
Query: 418 PNTPVSHVTMSETNGEIASV-------LQTTKTGGSILRLHTINAQLITSLASELRITSV 470
+ + + +A+ ++ L+ S + ++
Sbjct: 66 VDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWAL 125
Query: 471 TFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDS 524
+ + + + + +V GT +W + A T P + + + +S
Sbjct: 126 KWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVES 179
Score = 31.7 bits (70), Expect = 0.23
Identities = 15/90 (16%), Positives = 34/90 (37%), Gaps = 11/90 (12%)
Query: 467 ITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPV--IAVTYSCDS 524
I SV+ N + V+ DG +++W L + + + + V + +
Sbjct: 17 IFSVSACN-------SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVL 69
Query: 525 QHLYASNTEGLVIIWESSSHNRTPKFLNLT 554
Q + E ++ ++S + F +T
Sbjct: 70 QAIERDAFELCLVA--TTSFSGDLLFYRIT 97
Score = 27.5 bits (59), Expect = 4.8
Identities = 10/42 (23%), Positives = 14/42 (33%)
Query: 365 CKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINT 406
+ HS+ V L S+ DG WD+ T
Sbjct: 279 SQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKT 320
Score = 27.1 bits (58), Expect = 6.2
Identities = 12/78 (15%), Positives = 24/78 (30%), Gaps = 4/78 (5%)
Query: 482 NVIVTGHSDGTIQLWSGYKLAHLLTLN---TNVALPVIAVTYSCDSQHLYASNTEGLVII 538
+ + DG ++ W + TLN ++ + + L A V
Sbjct: 302 ETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSL-AEPGVFDVKF 360
Query: 539 WESSSHNRTPKFLNLTLV 556
+ + LN +L
Sbjct: 361 LKKGWRSGMGADLNESLC 378
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 293
Score = 41.4 bits (95), Expect = 2e-04
Identities = 26/109 (23%), Positives = 36/109 (33%), Gaps = 5/109 (4%)
Query: 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYE 354
++ DN IRL ++ +R G D + G G I V++
Sbjct: 190 LVVSGSSDNTIRLW---DIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLV 246
Query: 355 LNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWD 403
L+ HS V L VSSS D T L+WD
Sbjct: 247 AALDPRAPAGTLCLRTLVEHSGRVFRL--QFDEFQIVSSSHDDTILIWD 293
Score = 36.7 bits (83), Expect = 0.006
Identities = 21/108 (19%), Positives = 31/108 (28%), Gaps = 9/108 (8%)
Query: 391 VSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSE--TNGEIASVLQTTKTGGSIL 448
VS S D T LWDI +R + + + +
Sbjct: 192 VSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDP 251
Query: 449 RLHTINAQLITSLASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLW 496
R L T + R+ + F IV+ D TI +W
Sbjct: 252 RAPAGTLCLRTLVEHSGRVFRLQFDE-------FQIVSSSHDDTILIW 292
Score = 30.2 bits (66), Expect = 0.60
Identities = 14/77 (18%), Positives = 30/77 (38%), Gaps = 3/77 (3%)
Query: 480 SQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIW 539
++V+G SD TI+LW A L L + + D++ + + +G + +W
Sbjct: 187 RDRLVVSGSSDNTIRLWDIECGACLRVLEGH---EELVRCIRFDNKRIVSGAYDGKIKVW 243
Query: 540 ESSSHNRTPKFLNLTLV 556
+ + +
Sbjct: 244 DLVAALDPRAPAGTLCL 260
Score = 30.2 bits (66), Expect = 0.61
Identities = 21/157 (13%), Positives = 51/157 (32%), Gaps = 24/157 (15%)
Query: 392 SSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLH 451
S+S D T +W+ +T ++R + ++ + + + + + +I
Sbjct: 153 SASGDRTIKVWNTSTCEFVRTLNG--HKRGIACLQYRDRL------VVSGSSDNTIRLWD 204
Query: 452 TINAQLITSLASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNV 511
+ + IV+G DG I++W +
Sbjct: 205 IECGACLRV------LEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTL 258
Query: 512 AL--------PVIAVTYSCDSQHLYASNTEGLVIIWE 540
L V + + D + +S+ + ++IW+
Sbjct: 259 CLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWD 293
Score = 28.3 bits (61), Expect = 2.4
Identities = 9/42 (21%), Positives = 16/42 (38%), Gaps = 7/42 (16%)
Query: 467 ITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLN 508
+ + + + IV+G D TI++W L L
Sbjct: 18 VYCLQYDD-------QKIVSGLRDNTIKIWDKNTLECKRILT 52
Score = 27.9 bits (60), Expect = 3.5
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 391 VSSSEDGTCLLWDINTIGYIREI 413
VS D T +WD NT+ R +
Sbjct: 29 VSGLRDNTIKIWDKNTLECKRIL 51
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos
taurus) [TaxId: 9913]}
Length = 371
Score = 40.6 bits (93), Expect = 3e-04
Identities = 12/81 (14%), Positives = 28/81 (34%), Gaps = 8/81 (9%)
Query: 467 ITSVTFSNAPEGVSQNVIVTGHSDGTIQLW--SGYKLAHLLTLNTNVALPVIAVTYSCDS 524
I+ ++ + I ++ + ++ SG K + L + V V ++ DS
Sbjct: 10 ISCHAWN--KDR---TQIAICPNNHEVHIYEKSGNKWVQVHELKEHNG-QVTGVDWAPDS 63
Query: 525 QHLYASNTEGLVIIWESSSHN 545
+ T+ +W
Sbjct: 64 NRIVTCGTDRNAYVWTLKGRT 84
Score = 34.4 bits (77), Expect = 0.032
Identities = 12/82 (14%), Positives = 25/82 (30%), Gaps = 7/82 (8%)
Query: 334 PDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSS 393
D + + + + +Y S NK L H+ VT + + V+
Sbjct: 17 KDRTQIAICPNNHEVHIY----EKSGNK---WVQVHELKEHNGQVTGVDWAPDSNRIVTC 69
Query: 394 SEDGTCLLWDINTIGYIREIPC 415
D +W + + +
Sbjct: 70 GTDRNAYVWTLKGRTWKPTLVI 91
Score = 32.9 bits (73), Expect = 0.11
Identities = 15/113 (13%), Positives = 37/113 (32%), Gaps = 19/113 (16%)
Query: 391 VSSSEDGTCLLWDINT-IGYIREIPCVDPNTPVSHVTMSETN-----GEIASVLQTTKTG 444
V++ D +L+ ++ G + +D S ++ + AS + G
Sbjct: 258 VAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAG 317
Query: 445 GSILRLHTINAQLITSLASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWS 497
+ LH + ++ ++ + + T DG + +W
Sbjct: 318 AGLDSLH------------KNSVSQISVL-SGGKAKCSQFCTTGMDGGMSIWD 357
Score = 31.0 bits (68), Expect = 0.38
Identities = 7/39 (17%), Positives = 17/39 (43%), Gaps = 4/39 (10%)
Query: 373 GHSACVTDLYLCAGFSVAV----SSSEDGTCLLWDINTI 407
H V+ + + +G ++ DG +WD+ ++
Sbjct: 323 LHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSL 361
Score = 28.7 bits (62), Expect = 1.8
Identities = 4/47 (8%), Positives = 17/47 (36%)
Query: 391 VSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASV 437
+ +++ + +++ + N V+ V + + I +
Sbjct: 23 AICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTC 69
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 337
Score = 39.8 bits (91), Expect = 5e-04
Identities = 8/59 (13%), Positives = 21/59 (35%), Gaps = 2/59 (3%)
Query: 482 NVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWE 540
V+ D + W A + + V++ S D +++ + + ++E
Sbjct: 278 KWFVSTGKDNLLNAWRTPYGASIFQSKES--SSVLSCDISVDDKYIVTGSGDKKATVYE 334
Score = 32.5 bits (72), Expect = 0.13
Identities = 15/90 (16%), Positives = 30/90 (33%), Gaps = 10/90 (11%)
Query: 454 NAQLITSLASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVAL 513
+A+ I +L + +VT S + TG G +++W + ++ L
Sbjct: 41 HARQINTLNHGEVVCAVTIS--NPT---RHVYTG-GKGCVKVWDISHPGNKSPVSQLDCL 94
Query: 514 ----PVIAVTYSCDSQHLYASNTEGLVIIW 539
+ + D L + IW
Sbjct: 95 NRDNYIRSCKLLPDGCTLIVGGEASTLSIW 124
Score = 32.1 bits (71), Expect = 0.15
Identities = 5/71 (7%), Positives = 14/71 (19%), Gaps = 10/71 (14%)
Query: 334 PDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSS 393
+ + S+ V + V+
Sbjct: 275 YCGKWFVSTGKDNLLNAW----RTPYGA------SIFQSKESSSVLSCDISVDDKYIVTG 324
Query: 394 SEDGTCLLWDI 404
S D ++++
Sbjct: 325 SGDKKATVYEV 335
Score = 30.2 bits (66), Expect = 0.74
Identities = 12/63 (19%), Positives = 21/63 (33%), Gaps = 3/63 (4%)
Query: 374 HSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGE 433
H +CV L VS+ +D W I + ++ V +S +
Sbjct: 264 HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS---KESSSVLSCDISVDDKY 320
Query: 434 IAS 436
I +
Sbjct: 321 IVT 323
Score = 29.8 bits (65), Expect = 0.86
Identities = 9/55 (16%), Positives = 19/55 (34%), Gaps = 1/55 (1%)
Query: 372 LGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVT 426
L H V + + + G +WDI+ G + +D +++
Sbjct: 48 LNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIR 101
>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 287
Score = 38.8 bits (88), Expect = 0.001
Identities = 8/41 (19%), Positives = 17/41 (41%), Gaps = 4/41 (9%)
Query: 366 KPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINT 406
+ + GH+ +T + +S S DG + W ++
Sbjct: 4 EVLKTISGHNKGIT----ALTVNPLISGSYDGRIMEWSSSS 40
Score = 31.9 bits (70), Expect = 0.20
Identities = 14/75 (18%), Positives = 23/75 (30%), Gaps = 9/75 (12%)
Query: 330 ATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSV 389
+ + G NI +Y + K L H V +L ++
Sbjct: 221 NEEEIEEDLVATGSLDTNIFIYSVK--------RPMKIIKALNAHKDGVNNLLWETPSTL 272
Query: 390 AVSSSEDGTCLLWDI 404
VSS D W++
Sbjct: 273 -VSSGADACIKRWNV 286
Score = 30.3 bits (66), Expect = 0.53
Identities = 10/60 (16%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
Query: 480 SQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIW 539
++++ TG D I ++S + ++ V + + S L +S + + W
Sbjct: 226 EEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRW 284
Score = 27.2 bits (58), Expect = 5.0
Identities = 4/31 (12%), Positives = 14/31 (45%), Gaps = 6/31 (19%)
Query: 467 ITSVTFSNAPEGVSQNVIVTGHSDGTIQLWS 497
+ ++ + + +V+ +D I+ W+
Sbjct: 261 VNNLLWET------PSTLVSSGADACIKRWN 285
>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 342
Score = 37.1 bits (84), Expect = 0.005
Identities = 14/135 (10%), Positives = 34/135 (25%), Gaps = 6/135 (4%)
Query: 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYE 354
+ N RL + ++ T A + G + V ++
Sbjct: 165 VGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFD 224
Query: 355 LN------ASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIG 408
+ + + V + ++ DG W++ T
Sbjct: 225 DQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRK 284
Query: 409 YIREIPCVDPNTPVS 423
I+ + ++ V
Sbjct: 285 KIKNFAKFNEDSVVK 299
Score = 36.0 bits (81), Expect = 0.011
Identities = 7/68 (10%), Positives = 22/68 (32%), Gaps = 1/68 (1%)
Query: 369 TILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNT-PVSHVTM 427
I ++D+ + S+ + +S DG+ ++ + ++ P+
Sbjct: 5 QIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNF 64
Query: 428 SETNGEIA 435
+
Sbjct: 65 IDNTDLQI 72
Score = 34.4 bits (77), Expect = 0.028
Identities = 7/65 (10%), Positives = 25/65 (38%), Gaps = 7/65 (10%)
Query: 467 ITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVAL--PVIAVTYSCDS 524
I+ + P ++++ DG++ ++ A + L ++ P++ + ++
Sbjct: 14 ISDIKII--PSK---SLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNT 68
Query: 525 QHLYA 529
Sbjct: 69 DLQIY 73
Score = 28.7 bits (62), Expect = 2.0
Identities = 14/81 (17%), Positives = 24/81 (29%), Gaps = 13/81 (16%)
Query: 468 TSVTFSNAPEGVSQNVIVTGHSDGTIQLW---SGYKLAHLLTLNTNVALPVIAVTYSCDS 524
S+ FS + T SDG I W + K+ + N V +C
Sbjct: 255 NSIEFSP-----RHKFLYTAGSDGIISCWNLQTRKKIKNFAKFN-----EDSVVKIACSD 304
Query: 525 QHLYASNTEGLVIIWESSSHN 545
L + ++ +
Sbjct: 305 NILCLATSDDTFKTNAAIDQT 325
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 299
Score = 36.5 bits (82), Expect = 0.005
Identities = 11/37 (29%), Positives = 17/37 (45%)
Query: 370 ILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINT 406
+ GH+ +T L A S+ +G WDI+T
Sbjct: 7 VRYGHNKAITALSSSADGKTLFSADAEGHINSWDIST 43
Score = 33.0 bits (73), Expect = 0.085
Identities = 11/77 (14%), Positives = 25/77 (32%), Gaps = 5/77 (6%)
Query: 467 ITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQH 526
IT+++ S +G + + ++G I W A + + +
Sbjct: 15 ITALSSS--ADG---KTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDL 69
Query: 527 LYASNTEGLVIIWESSS 543
S + L ++ S
Sbjct: 70 FTVSWDDHLKVVPAGGS 86
Score = 30.0 bits (65), Expect = 0.75
Identities = 7/60 (11%), Positives = 22/60 (36%), Gaps = 1/60 (1%)
Query: 481 QNVIVTGHSDGTIQLWSGYKLAHLLTLNTNV-ALPVIAVTYSCDSQHLYASNTEGLVIIW 539
+ TG D ++ +W+ K + + A+ + + + ++ + + W
Sbjct: 236 NVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFW 295
Score = 28.4 bits (61), Expect = 2.0
Identities = 11/71 (15%), Positives = 23/71 (32%), Gaps = 7/71 (9%)
Query: 334 PDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSS 393
PD L G +++V+ + I + V + + VS+
Sbjct: 234 PDNVRLATGSLDNSVIVWNMNKPSDHPII------IKGAHAMSSVNSVIWLNE-TTIVSA 286
Query: 394 SEDGTCLLWDI 404
+D W++
Sbjct: 287 GQDSNIKFWNV 297
Score = 26.5 bits (56), Expect = 9.1
Identities = 8/31 (25%), Positives = 14/31 (45%), Gaps = 6/31 (19%)
Query: 467 ITSVTFSNAPEGVSQNVIVTGHSDGTIQLWS 497
+ SV + N + IV+ D I+ W+
Sbjct: 272 VNSVIWLN------ETTIVSAGQDSNIKFWN 296
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 311
Score = 36.4 bits (82), Expect = 0.007
Identities = 10/59 (16%), Positives = 21/59 (35%)
Query: 482 NVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWE 540
I + +D TI++W+ L T+ + + Q L + + G +
Sbjct: 251 TKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVN 309
Score = 30.3 bits (66), Expect = 0.66
Identities = 11/47 (23%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 391 VSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASV 437
S+S D T +W++ T+ + IP V + + T + S+
Sbjct: 254 ASASADKTIKIWNVATLKVEKTIP-VGTRIEDQQLGIIWTKQALVSI 299
Score = 27.6 bits (59), Expect = 4.3
Identities = 19/114 (16%), Positives = 34/114 (29%), Gaps = 8/114 (7%)
Query: 291 AGAGMICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILV 350
A G N + + + ++ T +PD + I +
Sbjct: 205 ASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKI 264
Query: 351 YEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDI 404
+ N +T K+E TI +G L + VS S +G +
Sbjct: 265 W----NVATLKVEK----TIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNP 310
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein
7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}
Length = 342
Score = 35.9 bits (81), Expect = 0.011
Identities = 13/42 (30%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 365 CKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINT 406
K P +L GH V G + S S+D T +W T
Sbjct: 6 LKSPKVLKGHDDHVITCLQFCGNRIV-SGSDDNTLKVWSAVT 46
Score = 34.8 bits (78), Expect = 0.024
Identities = 33/186 (17%), Positives = 63/186 (33%), Gaps = 21/186 (11%)
Query: 362 IEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTP 421
E L GH+ V L VS S D + +WD+ T I +
Sbjct: 164 PETETCLHTLQGHTNRVY--SLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQS--L 219
Query: 422 VSHVTMSETNGEIASVLQTTKTGGSILRLHTINAQLITSLASELRITSVTFSNAPEGVSQ 481
S + + + ++L + ++ Q + +L + S
Sbjct: 220 TSGMELKD------NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK--- 270
Query: 482 NVIVTGHSDGTIQLW---SGYKLAHLLTLNT-NVALPVIAVTYSCDSQHLYASNTEGL-- 535
N ++T DGT++LW +G + +L+TL + V + S + G
Sbjct: 271 NFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEE 330
Query: 536 --VIIW 539
+++
Sbjct: 331 TKLLVL 336
Score = 32.9 bits (73), Expect = 0.086
Identities = 20/142 (14%), Positives = 46/142 (32%), Gaps = 12/142 (8%)
Query: 319 IRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACV 378
I G T+ + L G + +++ + ++ +
Sbjct: 210 IHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN 269
Query: 379 TDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDP---NTPVSHVTMSETNGEIA 435
+ + + S+DGT LWD+ T +IR + ++ V + S +
Sbjct: 270 KNFVITS--------SDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASN-TKLVC 320
Query: 436 SVLQTTKTGGSILRLHTINAQL 457
+V T + L + + +
Sbjct: 321 AVGSRNGTEETKLLVLDFDVDM 342
Score = 30.9 bits (68), Expect = 0.38
Identities = 30/182 (16%), Positives = 60/182 (32%), Gaps = 18/182 (9%)
Query: 363 EFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPV 422
E + +L+GH A V + VS + D +WD T + +
Sbjct: 125 ETGQCLHVLMGHVAAVRCVQYD--GRRVVSGAYDFMVKVWDPETETCLHTLQG------- 175
Query: 423 SHVTMSETNGEIASVLQTTKTGGSILRLHTINAQLI-TSLASELRITSVTFSNAPEGVSQ 481
H + + + SI I T + + + +
Sbjct: 176 -HTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD------- 227
Query: 482 NVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWES 541
N++V+G++D T+++W L TL + + S+ +G V +W+
Sbjct: 228 NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDL 287
Query: 542 SS 543
+
Sbjct: 288 KT 289
Score = 28.2 bits (61), Expect = 2.9
Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Query: 480 SQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQH 526
N IV+G D T+++WS L TL + V + +
Sbjct: 26 CGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTG-GVWSSQMRDNIII 71
>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 355
Score = 35.2 bits (79), Expect = 0.016
Identities = 16/192 (8%), Positives = 35/192 (18%), Gaps = 12/192 (6%)
Query: 334 PDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSS 393
D + + + E ++ +
Sbjct: 166 RDGSLAKVAFGTEGTPE---ITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQID 222
Query: 394 SEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEI------ASVLQTTKTGGSI 447
G E V I + +
Sbjct: 223 LSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFV 282
Query: 448 LRLHTINAQLITSLASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTL 507
+ L + + I S+ S + + D T+ + L ++
Sbjct: 283 VVLDAKTGERLAKFEMGHEIDSINVS--QDE-KPLLYALSTGDKTLYIHDAESGEELRSV 339
Query: 508 NTNVALPVIAVT 519
N P + T
Sbjct: 340 NQLGHGPQVITT 351
Score = 27.8 bits (60), Expect = 3.6
Identities = 20/170 (11%), Positives = 40/170 (23%), Gaps = 9/170 (5%)
Query: 384 CAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKT 443
FS ++D T+ +I P+ P V +
Sbjct: 65 STVFSRIARGERTDYVEVFDPVTLLPTADIEL--PDAPRFLVGTYPWM--TSLTPDGKTL 120
Query: 444 GGSILRLHTINAQLITSLASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAH 503
+ + R+ V + + DG++ +
Sbjct: 121 LFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGT 180
Query: 504 LLTLNTNV-----ALPVIAVTYSCDSQHLYASNTEGLVIIWESSSHNRTP 548
+T V + YS + L G + + SS +
Sbjct: 181 PEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKF 230
>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 355
Score = 34.9 bits (78), Expect = 0.024
Identities = 25/161 (15%), Positives = 53/161 (32%), Gaps = 14/161 (8%)
Query: 369 TILLGHSACVTDLYLCAGFS--VAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVT 426
T L GH V C F ++ ++D ++D ++ ++ + V +
Sbjct: 6 TTLRGHMTSVIT---CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSG--HDGGVWALK 60
Query: 427 MSETNGEIASVLQTTKTGGSILRLHTINAQLITSLASELRITSVTFSNAPEGVSQNVIVT 486
+ G + S + + E ++V + E + IVT
Sbjct: 61 YAH-GGILVSG------STDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVT 113
Query: 487 GHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHL 527
G D T+ +W K + + P++ T + +
Sbjct: 114 GSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFV 154
Score = 32.2 bits (71), Expect = 0.15
Identities = 15/79 (18%), Positives = 29/79 (36%), Gaps = 8/79 (10%)
Query: 467 ITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQH 526
IT + F + N ++TG D I+++ LL L+ + V A+ Y+
Sbjct: 16 ITCLQFED-------NYVITGADDKMIRVYDSINKKFLLQLSGHDG-GVWALKYAHGGIL 67
Query: 527 LYASNTEGLVIIWESSSHN 545
+ S + +
Sbjct: 68 VSGSTDRTVRVWDIKKGCC 86
Score = 27.2 bits (58), Expect = 5.2
Identities = 7/59 (11%), Positives = 22/59 (37%), Gaps = 7/59 (11%)
Query: 484 IVTGHSDGTIQLW---SGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIW 539
I+ S+ ++ SG + + + + + +V + + + A +G +
Sbjct: 296 ILVSGSENQFNIYNLRSGKLVHANILKDAD---QIWSVNFKGKTL-VAAVEKDGQSFLE 350
>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon
Thermoplasma acidophilum [TaxId: 2303]}
Length = 360
Score = 34.1 bits (76), Expect = 0.043
Identities = 22/173 (12%), Positives = 48/173 (27%), Gaps = 11/173 (6%)
Query: 340 WLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCA--GFSVAVSSSEDG 397
L S L + E P ++ L S A +
Sbjct: 192 NLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLND 251
Query: 398 TCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTINAQL 457
+ + + + + +GE A+ Q G + + + +
Sbjct: 252 MYKRSSPINVDPGDYRMIIPLESSILIYS-VPVHGEFAAYYQGAPEKGVL-LKYDVKTRK 309
Query: 458 ITSLASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTN 510
+T + + +T + S + ++ DG I + K T+ T+
Sbjct: 310 VTEVKNN--LTDLRLS--ADR---KTVMVRKDDGKIYTFPLEKPEDERTVETD 355
>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain
{Pseudomonas putida [TaxId: 303]}
Length = 346
Score = 33.2 bits (74), Expect = 0.085
Identities = 17/232 (7%), Positives = 50/232 (21%), Gaps = 9/232 (3%)
Query: 322 PLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDL 381
P G + + + V+ + P + A
Sbjct: 98 PDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS 157
Query: 382 YLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTT 441
AG + + G + + R+ + +
Sbjct: 158 LYVAGPDIYKMDVKTGKYT-VALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARF 216
Query: 442 KTGGSILRLHTINAQLITSLASELRITSVTFSNAPEGV------SQNVIVTGHSDGTIQL 495
K + ++ + + F++ E ++ +
Sbjct: 217 KDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAK 276
Query: 496 WSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWESSSHNRT 547
+ + + N + V + LY T + ++ + +
Sbjct: 277 YDLKQRKLIKAAN--LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKV 326
Score = 32.0 bits (71), Expect = 0.16
Identities = 3/52 (5%), Positives = 12/52 (23%)
Query: 483 VIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNTEG 534
++ + + + + + D++ Y N
Sbjct: 10 YMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHY 61
Score = 29.3 bits (64), Expect = 1.3
Identities = 15/167 (8%), Positives = 39/167 (23%), Gaps = 9/167 (5%)
Query: 383 LCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTK 442
L AG + ++ + D+ + + + M+ + A V
Sbjct: 4 LKAGHEYMIVTNYPNNLHVVDVASDTVYKSCV-MPDKFGPGTAMMAP-DNRTAYV--LNN 59
Query: 443 TGGSILRLHTINAQLITSLASELRITSVTFSNAPEGVSQN-----VIVTGHSDGTIQLWS 497
G I + + V S +S + V
Sbjct: 60 HYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVV 119
Query: 498 GYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWESSSH 544
+ + + + +L + +G + + +
Sbjct: 120 KPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIY 166
>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli
[TaxId: 562]}
Length = 333
Score = 32.5 bits (72), Expect = 0.12
Identities = 14/72 (19%), Positives = 25/72 (34%), Gaps = 2/72 (2%)
Query: 481 QNVIVTGHSDGTIQLWSGYKLAHLLTLNT-NVALPVIAVTYSCDSQHLYASN-TEGLVII 538
Q V + I +W+ L +V V + S D ++LY E V+
Sbjct: 4 QTVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLA 63
Query: 539 WESSSHNRTPKF 550
+ + + F
Sbjct: 64 YRIAPDDGALTF 75
Score = 27.9 bits (60), Expect = 3.4
Identities = 10/40 (25%), Positives = 18/40 (45%)
Query: 389 VAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMS 428
V ++S E +W++N G + VD V + +S
Sbjct: 6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVS 45
>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 337
Score = 31.3 bits (69), Expect = 0.32
Identities = 15/159 (9%), Positives = 44/159 (27%), Gaps = 8/159 (5%)
Query: 391 VSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSE-------TNGEIASV-LQTTK 442
++ + ++ D + + I D ++ T + S+
Sbjct: 5 LAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLV 64
Query: 443 TGGSILRLHTINAQLITSLASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLA 502
TG ++ R+ + ++ + A + +T ++
Sbjct: 65 TGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAET 124
Query: 503 HLLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWES 541
+ + ++ D LY + V+ E+
Sbjct: 125 LSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEA 163
Score = 30.2 bits (66), Expect = 0.58
Identities = 5/67 (7%), Positives = 23/67 (34%), Gaps = 4/67 (5%)
Query: 481 QNVIVTGHSDGTIQLW--SGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNTE-GLVI 537
++ I+ + + + ++T+ P+ + + YA+ + ++
Sbjct: 1 RDYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPM-VPMVAPGGRIAYATVNKSESLV 59
Query: 538 IWESSSH 544
+ +
Sbjct: 60 KIDLVTG 66
Score = 28.6 bits (62), Expect = 1.8
Identities = 15/265 (5%), Positives = 55/265 (20%), Gaps = 6/265 (2%)
Query: 154 DAINVFHPATYYGFDIAAIPDPLERTAWETMIRTYGQTPRQLFKSAHPMNVKKLTPAQES 213
+++ T + P ER + L P+ ++ +
Sbjct: 56 ESLVKIDLVTGETLGRIDLSTPEERVKSLFGA-ALSPDGKTLAIYESPVRLELTHFEVQP 114
Query: 214 RVEVIPNIRGLVWGSYVGSPDEPPPCIVWKHKHR----NPVSKLVPLRTNDVFGLAKFTT 269
+ + L +P + + + ++ + +
Sbjct: 115 TRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQS 174
Query: 270 LLHSYHKDKNTNLISSLNVIGAGAGMICWNECDNLIRLKMSKELPATPVIRPPLGATIAT 329
+ + + + + + ++ + + G
Sbjct: 175 WEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMR 234
Query: 330 ATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSV 389
D + + + +E + + + S
Sbjct: 235 EVRIMDVFYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRV-PLPHSYYSVNVSTDGST 293
Query: 390 AVSSSEDGTCLLWDINTIGYIREIP 414
G +D T+ ++
Sbjct: 294 VWLGGALGDLAAYDAETLEKKGQVD 318
Score = 28.6 bits (62), Expect = 2.1
Identities = 22/236 (9%), Positives = 58/236 (24%), Gaps = 14/236 (5%)
Query: 324 GATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIE--FCKPPTILLGHSACVTDL 381
++ A +PD TL + + + + +E+ + + +T L
Sbjct: 81 VKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITML 140
Query: 382 YLCAGFSVAVSSSEDGTCLLWDIN------TIGYIREIPCVDPNTPVSHVTMSETNGEIA 435
S D + + I P+ +
Sbjct: 141 AWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMAT 200
Query: 436 SVLQTTKTGGSILRLHTINAQLITSLASE----LRITSVTFSNAPEGVSQNVIVTGHSDG 491
K L L + + + V+ +
Sbjct: 201 PFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAYN 260
Query: 492 TIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWESSSHNRT 547
++ + K A + + + +V S D ++ G + +++ + +
Sbjct: 261 VLESFDLEKNASIKRVPLPHS--YYSVNVSTDGSTVWLGGALGDLAAYDAETLEKK 314
Score = 28.2 bits (61), Expect = 3.0
Identities = 19/216 (8%), Positives = 47/216 (21%), Gaps = 14/216 (6%)
Query: 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYE 354
+ ++ R T + G+ + G + + +E
Sbjct: 117 VALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWE 176
Query: 355 LNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIP 414
A ++ L D+ T
Sbjct: 177 AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAM--- 233
Query: 415 CVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTI-NAQLITSLASELRITSVTFS 473
V + + + + ++L + I + SV S
Sbjct: 234 -----REVRIMDVFYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRVPLPHSYYSVNVS 288
Query: 474 NAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNT 509
+G + + G + G + + L ++
Sbjct: 289 --TDG---STVWLGGALGDLAAYDAETLEKKGQVDL 319
>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of
cytochrome cd1-nitrite reductase {Paracoccus
denitrificans [TaxId: 266]}
Length = 432
Score = 30.9 bits (69), Expect = 0.43
Identities = 21/168 (12%), Positives = 46/168 (27%), Gaps = 16/168 (9%)
Query: 389 VAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSIL 448
+V+ + G L D +T + V +S +G V+ +++
Sbjct: 34 FSVTLRDAGQIALIDGSTYEIKTVLDT---GYAVHISRLSA-SGRYLFVIGRDGK-VNMI 88
Query: 449 RLHTINAQLITSLASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLL--- 505
L + + S+ S + I + + G L
Sbjct: 89 DLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQS 148
Query: 506 -------TLNTNVALPVIAVTYSCDSQHLYASNTE-GLVIIWESSSHN 545
+ V A+ S + E G +++ + + N
Sbjct: 149 TRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLN 196
>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 325
Score = 30.7 bits (67), Expect = 0.43
Identities = 10/61 (16%), Positives = 23/61 (37%), Gaps = 2/61 (3%)
Query: 482 NVIVTGHSDGTIQLW--SGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIW 539
T +D TI++W + K TL+ + + + + + +G + +
Sbjct: 264 QKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFY 323
Query: 540 E 540
E
Sbjct: 324 E 324
Score = 28.0 bits (60), Expect = 2.8
Identities = 11/48 (22%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
Query: 391 VSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSET-NGEIASV 437
+ D T +WD+ T +++ V + T NG I S+
Sbjct: 267 ATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISL 314
>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon
Methanosarcina mazei [TaxId: 2209]}
Length = 301
Score = 29.5 bits (64), Expect = 1.1
Identities = 10/72 (13%), Positives = 21/72 (29%), Gaps = 3/72 (4%)
Query: 480 SQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNTE-GLVII 538
S + I + T+ + S D +Y +N V I
Sbjct: 1 STFAYIANSESDNISVIDVTSNKVTATIPVGSN--PMGAVISPDGTKVYVANAHSNDVSI 58
Query: 539 WESSSHNRTPKF 550
+++++N
Sbjct: 59 IDTATNNVIATV 70
Score = 26.4 bits (56), Expect = 9.5
Identities = 7/59 (11%), Positives = 17/59 (28%), Gaps = 4/59 (6%)
Query: 451 HTINAQLITSLASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNT 509
T ++ + + + P+G + V V T+ + T+
Sbjct: 230 DTGTNKITARIPVGPDPAGIAVT--PDG--KKVYVALSFCNTVSVIDTATNTITATMAV 284
>d1tkla_ d.248.1.1 (A:) Coproporphyrinogen III oxidase {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 325
Score = 28.9 bits (64), Expect = 1.4
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 81 YLADILVNNEGFDFGVRQNGQRVDSVI--LPPWAS 113
Y+ L+ + G FG+R G RV+S++ LP AS
Sbjct: 263 YVEFNLIYDRGTQFGLRTPGSRVESILMSLPEHAS 297
>gi|206564140|ref|YP_002234903.1|(51-382:385) putative amine
dehydrogenase [Burkholderia cenocepacia J2315]
gi|198040180|emb|CAR56163.1| putative amine
dehydrogenase [Burkholderia cenocepacia J2315]
gi|194561004|ref|YP_002096029.1| hypothetical protein
BCPG_04901 [Burkholderia cenocepacia PC184]
gi|124876520|gb|EAY66510.1| hypothetical protein
BCPG_04901 [Burkholderia cenocepacia PC184]
gi|170737581|ref|YP_001778841.1| amine dehydrogenase
[Burkholderia cenocepacia MC0-3]
gi|169819769|gb|ACA94351.1| Amine dehydrogenase
[Burkholderia cenocepacia MC0-3]
gi|78061451|ref|YP_371359.1| amine dehydrogenase
[Burkholderia sp. 383] gi|77969336|gb|ABB10715.1|
Amine dehydrogenase [Burkholderia sp. 383]
gi|107025662|ref|YP_623173.1| amine dehydrogenase
[Burkholderia cenocepacia AU 1054]
gi|116693156|ref|YP_838689.1| amine dehydrogenase
[Burkholderia cenocepacia HI2424]
gi|105895036|gb|ABF78200.1| Amine dehydrogenase
[Burkholderia cenocepacia AU 1054]
gi|116651156|gb|ABK11796.1| Amine dehydrogenase
[Burkholderia cenocepacia HI2424] E=8e-14 s/c=0.25
id=29% cov=82%
Length = 321
Score = 28.8 bits (63), Expect = 1.9
Identities = 21/169 (12%), Positives = 41/169 (24%), Gaps = 16/169 (9%)
Query: 384 CAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVD---PNTPVSHVTMSETNGEIASVLQT 440
FS + + D T+ + EI + P + T +G
Sbjct: 35 TTYFSRGSHGTRTDVVEIIDNTTLDHAGEIVIPAKHAQHVPSPYNTAFSADG----KRLY 90
Query: 441 TKTGGSILRLHTINAQLITSLASELRITSVTFSNAPEGVSQNVIVTGHSDG-TIQLW--S 497
+ I+A L+ V P G + G + + +
Sbjct: 91 VANITPAASVTVIDAVSKKMLSEIDTAACVLAY--PAG--DDRFTALCESGKALTVTLDA 146
Query: 498 GYKLAHLLTLNTNVALPVIAVTYSCD--SQHLYASNTEGLVIIWESSSH 544
K A + + + + + G V + S
Sbjct: 147 NGKEAKRTMSDAFIDVDKDPAFVNASRYKGDYLFTTYGGNVRSADFSGD 195
>d1f5va_ d.90.1.1 (A:) Oxygen-insensitive NAD(P)H nitroreductase
{Escherichia coli, major form, NfsA [TaxId: 562]}
Length = 240
Score = 27.8 bits (61), Expect = 3.0
Identities = 17/86 (19%), Positives = 33/86 (38%), Gaps = 8/86 (9%)
Query: 199 AHPMNVKKLTPAQESRVEVIPNIRGLVWGSYVGSPDEPPPCIVWKHKHRNPVSKLVPL-- 256
+ + +++ +P ++G +G P + P K R P S LV
Sbjct: 126 GVYIGGLRNNIEAVTKLLKLPQHVLPLFGLCLGWPADNPD-----LKPRLPASILVHENS 180
Query: 257 -RTNDVFGLAKFTTLLHSYHKDKNTN 281
+ D LA++ L Y+ + +N
Sbjct: 181 YQPLDKGALAQYDEQLAEYYLTRGSN 206
>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 368
Score = 28.0 bits (61), Expect = 3.5
Identities = 15/172 (8%), Positives = 35/172 (20%), Gaps = 18/172 (10%)
Query: 389 VAVSSSEDGTCLLWDINTIGYIREIPC-----VDPNTPVSHVTMSETNGEIASVLQTTKT 443
+ + + + P +H S +A+
Sbjct: 138 LLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSC-PASLAAS------ 190
Query: 444 GGSILRLHTINAQLITSLASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAH 503
L A A + + A ++ S
Sbjct: 191 -----DLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATM 245
Query: 504 LLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWESSSHNRTPKFLNLTL 555
++ N + A + + A I+ + H+R+
Sbjct: 246 KAAIDGNES-GRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENT 296
>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of
cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa
[TaxId: 287]}
Length = 426
Score = 26.5 bits (57), Expect = 9.8
Identities = 17/154 (11%), Positives = 45/154 (29%), Gaps = 6/154 (3%)
Query: 390 AVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILR 449
+V+ + G L D ++ ++ I V MS + + + + + ++
Sbjct: 35 SVTLRDAGQIALVDGDSKKIVKVIDTGY---AVHISRMSASGRYLLVIGRDARI--DMID 89
Query: 450 LHTINAQLITSLASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNT 509
L + + + SV S + I + + G + + +
Sbjct: 90 LWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDG-ETLEPKQIVS 148
Query: 510 NVALPVIAVTYSCDSQHLYASNTEGLVIIWESSS 543
+ V TY + + + +
Sbjct: 149 TRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVK 182
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.134 0.415
Gapped
Lambda K H
0.267 0.0373 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,061,835
Number of extensions: 93703
Number of successful extensions: 349
Number of sequences better than 10.0: 1
Number of HSP's gapped: 314
Number of HSP's successfully gapped: 105
Length of query: 556
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 466
Effective length of database: 1,171,896
Effective search space: 546103536
Effective search space used: 546103536
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.9 bits)