BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1078
(199 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9Y388|RBMX2_HUMAN RNA-binding motif protein, X-linked 2 OS=Homo sapiens GN=RBMX2 PE=1
SV=2
Length = 322
Score = 211 bits (536), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 92/140 (65%), Positives = 117/140 (83%), Gaps = 2/140 (1%)
Query: 1 MNPLTNVKNIKKLSEQELSSG--SKTSWHDQYKDSAWIFVGGLPYDLSEGDVICIFSQYG 58
MNPLT VK I +L+E+E+ G K SWH +YKDSAWIF+GGLPY+L+EGD+IC+FSQYG
Sbjct: 1 MNPLTKVKLINELNEREVQLGVADKVSWHSEYKDSAWIFLGGLPYELTEGDIICVFSQYG 60
Query: 59 EIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHVNDYKPPKD 118
EIVN+NLVRDK TGKSKGFCF+CYEDQRST+L+VDN NG+K+ RTIRVDHV++Y+ PKD
Sbjct: 61 EIVNINLVRDKKTGKSKGFCFLCYEDQRSTILAVDNFNGIKIKGRTIRVDHVSNYRAPKD 120
Query: 119 NKYTDEETKKLRTIGCAPGT 138
++ D+ T++L+ GC T
Sbjct: 121 SEEIDDVTRQLQEKGCGART 140
>sp|Q8R0F5|RBMX2_MOUSE RNA-binding motif protein, X-linked 2 OS=Mus musculus GN=Rbmx2 PE=1
SV=1
Length = 326
Score = 209 bits (531), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 90/137 (65%), Positives = 115/137 (83%), Gaps = 2/137 (1%)
Query: 1 MNPLTNVKNIKKLSEQELSSG--SKTSWHDQYKDSAWIFVGGLPYDLSEGDVICIFSQYG 58
MNPLT VK I +L+E+E+ G K SWH +YK SAWIFVGGLPY+L+EGD+IC+FSQYG
Sbjct: 1 MNPLTKVKLINELNEREVQLGVAEKVSWHSEYKHSAWIFVGGLPYELTEGDIICVFSQYG 60
Query: 59 EIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHVNDYKPPKD 118
EIVN+NLVRDK TGKSKGFCF+CYEDQRSTVL+VDN NG+K+ RTIRVDHV++Y+ P++
Sbjct: 61 EIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNFNGIKIKGRTIRVDHVSNYRAPQE 120
Query: 119 NKYTDEETKKLRTIGCA 135
++ D+ T++L+ GC
Sbjct: 121 SEDVDDVTRELQEKGCG 137
>sp|B0BN49|RBMX2_RAT RNA-binding motif protein, X-linked 2 OS=Rattus norvegicus GN=Rbmx2
PE=2 SV=1
Length = 328
Score = 207 bits (528), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 91/140 (65%), Positives = 116/140 (82%), Gaps = 2/140 (1%)
Query: 1 MNPLTNVKNIKKLSEQELSSG--SKTSWHDQYKDSAWIFVGGLPYDLSEGDVICIFSQYG 58
MNPLT VK I +L+E+E+ G K SWH +YKDSAWIF+GGLPY+L+EGD+IC+FSQYG
Sbjct: 1 MNPLTKVKLINELNEREVQLGVAEKVSWHSEYKDSAWIFLGGLPYELTEGDIICVFSQYG 60
Query: 59 EIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHVNDYKPPKD 118
EIVN+NLVRDK TGKSKGFCF+CYEDQRSTVL+VDN NG+K+ RTIRVDHV +Y+ P++
Sbjct: 61 EIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNFNGIKIKGRTIRVDHVANYRAPQE 120
Query: 119 NKYTDEETKKLRTIGCAPGT 138
++ D+ T++L+ GC T
Sbjct: 121 SEDVDDVTRELQEKGCGAKT 140
>sp|Q9SD61|C3H42_ARATH Zinc finger CCCH domain-containing protein 42 OS=Arabidopsis
thaliana GN=At3g47120 PE=2 SV=1
Length = 352
Score = 170 bits (430), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 76/130 (58%), Positives = 104/130 (80%), Gaps = 5/130 (3%)
Query: 1 MNPLTNVKNIKKLS--EQELSSGSKTSWHDQYKDSAWIFVGGLPYDLSEGDVICIFSQYG 58
MNPLT VKN++K++ E +L + SWH +YK+SA+++VGG+P+DL+EGD++ +FSQYG
Sbjct: 1 MNPLTQVKNLQKINARESDLGISDEASWHAKYKNSAYVYVGGIPFDLTEGDLLAVFSQYG 60
Query: 59 EIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHVNDYKPPKD 118
EIV++NL+RDK TGKSKGF F+ YEDQRST+L+VDNLNG VL RTI+VDH YK ++
Sbjct: 61 EIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILAVDNLNGALVLGRTIKVDHCGAYKKHEE 120
Query: 119 NKYTDEETKK 128
DEET++
Sbjct: 121 ---EDEETRR 127
>sp|Q10B98|C3H25_ORYSJ Zinc finger CCCH domain-containing protein 25 OS=Oryza sativa
subsp. japonica GN=Os03g0826400 PE=2 SV=1
Length = 312
Score = 167 bits (424), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 71/112 (63%), Positives = 93/112 (83%), Gaps = 2/112 (1%)
Query: 1 MNPLTNVKNIKKLSEQE--LSSGSKTSWHDQYKDSAWIFVGGLPYDLSEGDVICIFSQYG 58
MNPLT VK + ++++E L G SWH ++KDSA++FVGG+PYDL+EGD++ +F+QYG
Sbjct: 1 MNPLTQVKRTQVINQKEALLGIGEDGSWHAKFKDSAYVFVGGIPYDLTEGDLLAVFAQYG 60
Query: 59 EIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHV 110
E+V++NLVRDK TGKSKGF F+ YEDQRST+L+VDNLNG KVL R +RVDHV
Sbjct: 61 EVVDVNLVRDKGTGKSKGFAFLAYEDQRSTILAVDNLNGAKVLGRIVRVDHV 112
>sp|O94290|IST3_SCHPO U2 snRNP component ist3 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=cwf29 PE=1 SV=1
Length = 217
Score = 152 bits (383), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 72/145 (49%), Positives = 99/145 (68%), Gaps = 9/145 (6%)
Query: 4 LTNVKNIKKLSEQELSSGSKTSWHDQYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNL 63
+ +++ I++L+EQEL +SWH Y DSA+I++G L +DL+E D++C+FS++GE V++
Sbjct: 1 MNSIRQIERLNEQELDKPFSSSWHQDYSDSAYIYIGNLDFDLNEDDILCVFSEFGEPVDI 60
Query: 64 NLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHVNDYKPPKDNKYTD 123
NLVRDK TGKSKGF F+ YEDQRSTVL+VDN+ VK+L R +RVDHV YK P+
Sbjct: 61 NLVRDKETGKSKGFAFLKYEDQRSTVLAVDNMTNVKLLDRLVRVDHVASYKVPQ------ 114
Query: 124 EETKKLRTIGCAPGTEFGSILPVKT 148
K+ P E GS L V T
Sbjct: 115 ---KEKEPANLVPLGESGSSLSVST 136
>sp|P40565|IST3_YEAST U2 snRNP component IST3 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=IST3 PE=1 SV=1
Length = 148
Score = 119 bits (298), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 52/111 (46%), Positives = 85/111 (76%), Gaps = 4/111 (3%)
Query: 10 IKKLSEQELSSG---SKTSWHDQYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLV 66
I++++++EL SG SWH++YKD+A+I++G L +L+EGD++ +FS+YG V++ L
Sbjct: 4 IQQINDKELQSGILSPHQSWHNEYKDNAYIYIGNLNRELTEGDILTVFSEYGVPVDVILS 63
Query: 67 RDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHVNDYKPPK 117
RD+ TG+S+GF ++ YEDQRST+L+VDNLNG K+ R +++DH Y+P +
Sbjct: 64 RDENTGESQGFAYLKYEDQRSTILAVDNLNGFKIGGRALKIDHTF-YRPKR 113
>sp|Q8HXM1|CSTF2_BOVIN Cleavage stimulation factor subunit 2 OS=Bos taurus GN=CSTF2 PE=2
SV=1
Length = 572
Score = 71.6 bits (174), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 57/96 (59%), Gaps = 7/96 (7%)
Query: 36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
+FVG +PY+ +E + IFS+ G +V+ LV D+ TGK KG+ F Y+DQ + + ++ NL
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 96 NGVKVLSRTIRVDHVNDYKPPKDNKYTDEETKKLRT 131
NG + R +RVD+ K NK EE K L T
Sbjct: 78 NGREFSGRALRVDNAASEK----NK---EELKSLGT 106
>sp|P33240|CSTF2_HUMAN Cleavage stimulation factor subunit 2 OS=Homo sapiens GN=CSTF2 PE=1
SV=1
Length = 577
Score = 71.2 bits (173), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 57/96 (59%), Gaps = 7/96 (7%)
Query: 36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
+FVG +PY+ +E + IFS+ G +V+ LV D+ TGK KG+ F Y+DQ + + ++ NL
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 96 NGVKVLSRTIRVDHVNDYKPPKDNKYTDEETKKLRT 131
NG + R +RVD+ K NK EE K L T
Sbjct: 78 NGREFSGRALRVDNAASEK----NK---EELKSLGT 106
>sp|Q8BIQ5|CSTF2_MOUSE Cleavage stimulation factor subunit 2 OS=Mus musculus GN=Cstf2 PE=1
SV=2
Length = 580
Score = 71.2 bits (173), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 57/96 (59%), Gaps = 7/96 (7%)
Query: 36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
+FVG +PY+ +E + IFS+ G +V+ LV D+ TGK KG+ F Y+DQ + + ++ NL
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 96 NGVKVLSRTIRVDHVNDYKPPKDNKYTDEETKKLRT 131
NG + R +RVD+ K NK EE K L T
Sbjct: 78 NGREFSGRALRVDNAASEK----NK---EELKSLGT 106
>sp|Q5RDA3|CSTF2_PONAB Cleavage stimulation factor subunit 2 OS=Pongo abelii GN=CSTF2 PE=2
SV=1
Length = 577
Score = 71.2 bits (173), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 57/96 (59%), Gaps = 7/96 (7%)
Query: 36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
+FVG +PY+ +E + IFS+ G +V+ LV D+ TGK KG+ F Y+DQ + + ++ NL
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 96 NGVKVLSRTIRVDHVNDYKPPKDNKYTDEETKKLRT 131
NG + R +RVD+ K NK EE K L T
Sbjct: 78 NGREFSGRALRVDNAASEK----NK---EELKSLGT 106
>sp|Q9H0L4|CSTFT_HUMAN Cleavage stimulation factor subunit 2 tau variant OS=Homo sapiens
GN=CSTF2T PE=1 SV=1
Length = 616
Score = 70.1 bits (170), Expect = 8e-12, Method: Composition-based stats.
Identities = 39/116 (33%), Positives = 66/116 (56%), Gaps = 11/116 (9%)
Query: 36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
+FVG +PY+ +E + IFS+ G +V+ LV D+ TGK KG+ F Y+DQ + + ++ NL
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 96 NGVKVLSRTIRVDHVNDYKPPKDNKYTDEETKKLRTIG-CAPGTEFGSILPVKTED 150
NG + R +RV DN +++ ++L+++G AP + P+ ED
Sbjct: 78 NGREFSGRALRV----------DNAASEKNKEELKSLGPAAPIIDSPYGDPIDPED 123
>sp|Q8C7E9|CSTFT_MOUSE Cleavage stimulation factor subunit 2 tau variant OS=Mus musculus
GN=Cstf2t PE=1 SV=2
Length = 632
Score = 69.7 bits (169), Expect = 1e-11, Method: Composition-based stats.
Identities = 39/116 (33%), Positives = 66/116 (56%), Gaps = 11/116 (9%)
Query: 36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
+FVG +PY+ +E + IFS+ G +V+ LV D+ TGK KG+ F Y+DQ + + ++ NL
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 96 NGVKVLSRTIRVDHVNDYKPPKDNKYTDEETKKLRTIG-CAPGTEFGSILPVKTED 150
NG + R +RV DN +++ ++L+++G AP + P+ ED
Sbjct: 78 NGREFSGRALRV----------DNAASEKNKEELKSLGPAAPIIDSPYGDPIDPED 123
>sp|Q2QKB3|U2A2A_WHEAT Splicing factor U2af large subunit A OS=Triticum aestivum
GN=U2AF65A PE=2 SV=1
Length = 591
Score = 67.0 bits (162), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 47/82 (57%)
Query: 36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
IFVGGLPY +E V + +G + ++V+DK TG SKG+ F Y+D T ++ L
Sbjct: 394 IFVGGLPYYFTEAQVRELLETFGPLRGFDIVKDKETGNSKGYAFCLYKDGTVTDIACAAL 453
Query: 96 NGVKVLSRTIRVDHVNDYKPPK 117
NG+++ RT+ V N P+
Sbjct: 454 NGIQLGDRTLTVRRANQGAEPR 475
>sp|Q2QKB4|U2A2B_WHEAT Splicing factor U2af large subunit B OS=Triticum aestivum
GN=U2AF65B PE=2 SV=1
Length = 543
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%)
Query: 36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
IFVGGLPY +E V + +G + +LV+D+ TG SKG+ F Y+D T ++ L
Sbjct: 329 IFVGGLPYYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLNVTDIACAAL 388
Query: 96 NGVKVLSRTIRVDHVN 111
NG+K+ +T+ V N
Sbjct: 389 NGIKMGDKTLTVRRAN 404
>sp|Q2R0Q1|U2A2A_ORYSJ Splicing factor U2af large subunit A OS=Oryza sativa subsp.
japonica GN=U2AF65A PE=2 SV=2
Length = 574
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%)
Query: 36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
IFVGGLPY +E V + +G + +LV+D+ TG SKG+ F Y+D T ++ L
Sbjct: 360 IFVGGLPYYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLNVTDIACAAL 419
Query: 96 NGVKVLSRTIRVDHVN 111
NG+K+ +T+ V N
Sbjct: 420 NGIKMGDKTLTVRRAN 435
>sp|O23212|U2A2A_ARATH Splicing factor U2af large subunit A OS=Arabidopsis thaliana
GN=U2AF65A PE=2 SV=2
Length = 573
Score = 65.5 bits (158), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%)
Query: 36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
IFVGGLPY +E V + +G + +LV+D+ TG SKG+ F Y+D T ++ L
Sbjct: 361 IFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAAL 420
Query: 96 NGVKVLSRTIRVDHVN 111
NG+K+ +T+ V N
Sbjct: 421 NGIKMGDKTLTVRRAN 436
>sp|Q2QZL4|U2A2B_ORYSJ Splicing factor U2af large subunit B OS=Oryza sativa subsp.
japonica GN=U2AF65B PE=2 SV=2
Length = 548
Score = 65.1 bits (157), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%)
Query: 36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
IFVGGLPY +E V + +G + +LV+D+ TG SKG+ F Y+D T ++ L
Sbjct: 336 IFVGGLPYYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLNVTDIACAAL 395
Query: 96 NGVKVLSRTIRVDHVN 111
NG+K+ +T+ V N
Sbjct: 396 NGIKMGDKTLTVRRAN 411
>sp|Q8L716|U2A2B_ARATH Splicing factor U2af large subunit B OS=Arabidopsis thaliana
GN=U2AF65B PE=2 SV=2
Length = 589
Score = 65.1 bits (157), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 51/95 (53%), Gaps = 4/95 (4%)
Query: 13 LSEQELSSGSKTSWHDQYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITG 72
L LSSGS + IFVGGLPY +E + + +G + NLV+D+ TG
Sbjct: 358 LGAVGLSSGSTGGLEGPDR----IFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETG 413
Query: 73 KSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRV 107
SKG+ F Y+D T ++ LNG+K+ +T+ V
Sbjct: 414 NSKGYAFCVYQDPSVTDIACAALNGIKMGDKTLTV 448
>sp|Q9ZR40|U2A2B_NICPL Splicing factor U2af large subunit B OS=Nicotiana plumbaginifolia
GN=U2AF65B PE=2 SV=1
Length = 573
Score = 65.1 bits (157), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 45/76 (59%)
Query: 36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
IFVGGLPY +E + + +G + +LV+D+ TG SKG+ F Y+D T ++ L
Sbjct: 361 IFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDVSVTDIACAAL 420
Query: 96 NGVKVLSRTIRVDHVN 111
NG+K+ +T+ V N
Sbjct: 421 NGIKMGDKTLTVRRAN 436
>sp|Q9ZR39|U2A2A_NICPL Splicing factor U2af large subunit A OS=Nicotiana plumbaginifolia
GN=U2AF65A PE=2 SV=1
Length = 555
Score = 64.7 bits (156), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 46/76 (60%)
Query: 36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
IFVGGLPY +E + + +G++ +LV+D+ TG SKG+ F Y+D T ++ L
Sbjct: 343 IFVGGLPYYFTESQIRELLESFGQLRGFDLVKDRETGNSKGYAFCVYQDVSVTDIACAAL 402
Query: 96 NGVKVLSRTIRVDHVN 111
NG+K+ +T+ V N
Sbjct: 403 NGIKMGDKTLTVRRAN 418
>sp|Q04836|ROC3_ARATH 31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana
GN=RBP31 PE=1 SV=1
Length = 329
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 54/88 (61%), Gaps = 1/88 (1%)
Query: 30 YKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTV 89
Y+ + ++VG LP+D+ G + +FS++G++V +V D+ TG+S+GF F+ D
Sbjct: 240 YEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELN 299
Query: 90 LSVDNLNGVKVLSRTIRVDHVNDYKPPK 117
++ L+G + R IRV+ V + +PP+
Sbjct: 300 EAISALDGQNLEGRAIRVN-VAEERPPR 326
Score = 38.5 bits (88), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 48/97 (49%), Gaps = 2/97 (2%)
Query: 14 SEQELSSG--SKTSWHDQYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKIT 71
SE ++S G S+ + + + A +FVG L YD++ + +F Q G + ++ ++ T
Sbjct: 128 SEGDVSEGAVSERAEFPEPSEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRET 187
Query: 72 GKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVD 108
+S+GF F+ +V+ N + R + V+
Sbjct: 188 DQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVN 224
>sp|Q05966|GRP10_BRANA Glycine-rich RNA-binding protein 10 OS=Brassica napus GN=GRP10 PE=2
SV=1
Length = 169
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 50/74 (67%)
Query: 37 FVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLN 96
FVGGL + + ++ FSQ+GE+++ ++ D+ TG+S+GF F+ ++D++S ++D +N
Sbjct: 9 FVGGLAWATGDAELERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMKDAIDEMN 68
Query: 97 GVKVLSRTIRVDHV 110
G ++ RTI V+
Sbjct: 69 GKELDGRTITVNEA 82
>sp|Q86U06|RBM23_HUMAN Probable RNA-binding protein 23 OS=Homo sapiens GN=RBM23 PE=1 SV=1
Length = 439
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 49/77 (63%)
Query: 36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
++VG L ++++E + IF +G+I N+ L++D TG+SKG+ FI + D +++ L
Sbjct: 265 LYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQL 324
Query: 96 NGVKVLSRTIRVDHVND 112
NG ++ R +RV HV +
Sbjct: 325 NGFELAGRPMRVGHVTE 341
>sp|Q57014|RBPA_SYNY3 Putative RNA-binding protein RbpA OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=rbpA PE=3 SV=3
Length = 101
Score = 61.6 bits (148), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 50/85 (58%), Gaps = 4/85 (4%)
Query: 36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
I+VG L YD+SE D+ +F++YG + + L D+ TG+ +GF F+ E +++ L
Sbjct: 3 IYVGNLSYDVSEADLTAVFAEYGSVKRVQLPTDRETGRMRGFGFVELEADAEETAAIEAL 62
Query: 96 NGVKVLSRTIRVDHVNDYKPPKDNK 120
+G + + R ++V+ P++N+
Sbjct: 63 DGAEWMGRDLKVNKAK----PRENR 83
>sp|O43040|CTF1_SCHPO Cleavage and termination factor 1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=ctf1 PE=1 SV=1
Length = 363
Score = 61.6 bits (148), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 43/73 (58%)
Query: 36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
+FVG +PYD+SE + IF+Q G + LV D TG KG+ F + D +T ++V L
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRKL 68
Query: 96 NGVKVLSRTIRVD 108
N ++ R IRV+
Sbjct: 69 NNSELGPRKIRVE 81
>sp|Q9FNR1|RBG3_ARATH Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis
thaliana GN=RBG3 PE=2 SV=1
Length = 309
Score = 61.6 bits (148), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 50/80 (62%)
Query: 33 SAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSV 92
S+ +F+GG+ Y + E + F++YGE+V+ ++ D+ TG+S+GF F+ + + ++
Sbjct: 39 SSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAI 98
Query: 93 DNLNGVKVLSRTIRVDHVND 112
L+G + R ++V++ ND
Sbjct: 99 QALDGRDLHGRVVKVNYAND 118
>sp|Q00916|RU17_YEAST U1 small nuclear ribonucleoprotein 70 kDa homolog OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=SNP1 PE=1
SV=1
Length = 300
Score = 61.6 bits (148), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 48/76 (63%), Gaps = 3/76 (3%)
Query: 36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
IF+G LPYDL E ++ F ++GEI + +V+DKIT KSKG+ FI ++D S+ ++ +
Sbjct: 109 IFIGRLPYDLDEIELQKYFVKFGEIEKIRIVKDKITQKSKGYAFIVFKDPISSKMAFKEI 168
Query: 96 N---GVKVLSRTIRVD 108
G+++ R VD
Sbjct: 169 GVHRGIQIKDRICIVD 184
>sp|Q9P6P7|YKCG_SCHPO Uncharacterized RNA-binding protein C644.16 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC644.16 PE=4 SV=1
Length = 422
Score = 61.2 bits (147), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 44/76 (57%)
Query: 33 SAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSV 92
S ++VG +PY+++E VI IF Q G + + LV D +G+ KG+ F Y D + +V
Sbjct: 4 SCVVYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAASAV 63
Query: 93 DNLNGVKVLSRTIRVD 108
NLN +R +RVD
Sbjct: 64 RNLNNYDAGTRRLRVD 79
>sp|P25299|RNA15_YEAST mRNA 3'-end-processing protein RNA15 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=RNA15 PE=1 SV=1
Length = 296
Score = 61.2 bits (147), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 48/74 (64%)
Query: 36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
+++G +PYD +E ++ + S G ++NL ++ D TG+SKG+ FI + D S+ +V NL
Sbjct: 20 VYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNL 79
Query: 96 NGVKVLSRTIRVDH 109
NG ++ SR ++ +
Sbjct: 80 NGYQLGSRFLKCGY 93
>sp|P49311|GRP2_SINAL Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba PE=2 SV=1
Length = 169
Score = 60.1 bits (144), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 48/74 (64%)
Query: 37 FVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLN 96
FVGGL + E + FSQ+GE+V+ ++ D+ TG+S+GF F+ ++D++S +++ +N
Sbjct: 11 FVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMN 70
Query: 97 GVKVLSRTIRVDHV 110
G + R+I V+
Sbjct: 71 GQDLDGRSITVNEA 84
>sp|Q5RF83|CIRBP_PONAB Cold-inducible RNA-binding protein OS=Pongo abelii GN=CIRBP PE=2
SV=1
Length = 172
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 50/83 (60%), Gaps = 6/83 (7%)
Query: 32 DSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYE---DQRST 88
D +FVGGL +D +E + +FS+YG+I + +V+D+ T +S+GF F+ +E D +
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 89 VLSVDNLNGVKVLSRTIRVDHVN 111
+++ +NG V R IRVD
Sbjct: 64 MMA---MNGKSVDGRQIRVDQAG 83
>sp|Q14011|CIRBP_HUMAN Cold-inducible RNA-binding protein OS=Homo sapiens GN=CIRBP PE=1
SV=1
Length = 172
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 50/83 (60%), Gaps = 6/83 (7%)
Query: 32 DSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYE---DQRST 88
D +FVGGL +D +E + +FS+YG+I + +V+D+ T +S+GF F+ +E D +
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 89 VLSVDNLNGVKVLSRTIRVDHVN 111
+++ +NG V R IRVD
Sbjct: 64 MMA---MNGKSVDGRQIRVDQAG 83
>sp|P19682|ROC3_NICSY 28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris
PE=1 SV=1
Length = 276
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 56/92 (60%), Gaps = 2/92 (2%)
Query: 30 YKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTV 89
++ + I+VG +P+D+ + + +FS++G++V+ +V D+ +G+S+GF F+ +
Sbjct: 187 FQPTYRIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMS 246
Query: 90 LSVDNLNGVKVLSRTIRVDHVNDYKPPKDNKY 121
++ NL+G + RTIRV+ + P+ N Y
Sbjct: 247 EAIANLDGQTLDGRTIRVNAAEER--PRRNTY 276
Score = 39.3 bits (90), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 34/64 (53%)
Query: 18 LSSGSKTSWHDQYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGF 77
+ +T + + + A +FVG LPYD+ + +F Q G + ++ ++ T +S+GF
Sbjct: 81 VGEAGETEEYQEPSEDAKLFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGF 140
Query: 78 CFIC 81
F+
Sbjct: 141 GFVT 144
>sp|P42696|RBM34_HUMAN RNA-binding protein 34 OS=Homo sapiens GN=RBM34 PE=1 SV=2
Length = 430
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 31 KDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVL 90
+D +FVG LPY + E + F G I+ + +VRDK+TG KGF ++ +E+ S L
Sbjct: 284 RDKRSVFVGNLPYKVEESAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENTDSVHL 343
Query: 91 SVDNLNGVKVLSRTIRV 107
++ LN +++ R +RV
Sbjct: 344 AL-KLNNSELMGRKLRV 359
>sp|P60825|CIRBP_RAT Cold-inducible RNA-binding protein OS=Rattus norvegicus GN=Cirbp
PE=2 SV=1
Length = 172
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 50/83 (60%), Gaps = 6/83 (7%)
Query: 32 DSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYE---DQRST 88
D +FVGGL +D +E + +FS+YG+I + +V+D+ T +S+GF F+ +E D +
Sbjct: 4 DEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 89 VLSVDNLNGVKVLSRTIRVDHVN 111
+++ +NG V R IRVD
Sbjct: 64 MMA---MNGKSVDGRQIRVDQAG 83
>sp|P60824|CIRBP_MOUSE Cold-inducible RNA-binding protein OS=Mus musculus GN=Cirbp PE=1
SV=1
Length = 172
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 50/83 (60%), Gaps = 6/83 (7%)
Query: 32 DSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYE---DQRST 88
D +FVGGL +D +E + +FS+YG+I + +V+D+ T +S+GF F+ +E D +
Sbjct: 4 DEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 89 VLSVDNLNGVKVLSRTIRVDHVN 111
+++ +NG V R IRVD
Sbjct: 64 MMA---MNGKSVDGRQIRVDQAG 83
>sp|P60826|CIRBP_CRIGR Cold-inducible RNA-binding protein OS=Cricetulus griseus GN=CIRBP
PE=2 SV=1
Length = 172
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 50/83 (60%), Gaps = 6/83 (7%)
Query: 32 DSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYE---DQRST 88
D +FVGGL +D +E + +FS+YG+I + +V+D+ T +S+GF F+ +E D +
Sbjct: 4 DEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 89 VLSVDNLNGVKVLSRTIRVDHVN 111
+++ +NG V R IRVD
Sbjct: 64 MMA---MNGKSVDGRQIRVDQAG 83
>sp|Q9DED4|CIRBB_XENLA Cold-inducible RNA-binding protein B OS=Xenopus laevis GN=cirbp-b
PE=1 SV=1
Length = 166
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 48/80 (60%)
Query: 32 DSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLS 91
D +F+GGL +D +E + +FS+YG+I + +V+D+ T +S+GF F+ +E+ +
Sbjct: 3 DEGKLFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDA 62
Query: 92 VDNLNGVKVLSRTIRVDHVN 111
+ +NG V R IRVD
Sbjct: 63 MMAMNGKAVDGRQIRVDQAG 82
>sp|P49310|GRP1_SINAL Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba PE=2 SV=1
Length = 166
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 48/74 (64%)
Query: 37 FVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLN 96
FVGGL + + + FSQYGE+++ ++ D+ TG+S+GF F+ ++D++S +++ +N
Sbjct: 11 FVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMN 70
Query: 97 GVKVLSRTIRVDHV 110
G + R+I V+
Sbjct: 71 GQDLDGRSITVNEA 84
>sp|Q5RC80|RBM39_PONAB RNA-binding protein 39 OS=Pongo abelii GN=RBM39 PE=2 SV=1
Length = 524
Score = 58.5 bits (140), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 47/77 (61%)
Query: 36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
++VG L ++++E + IF +G I ++ L+ D TG+SKG+ FI + D +++ L
Sbjct: 252 LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQL 311
Query: 96 NGVKVLSRTIRVDHVND 112
NG ++ R ++V HV +
Sbjct: 312 NGFELAGRPMKVGHVTE 328
>sp|Q14498|RBM39_HUMAN RNA-binding protein 39 OS=Homo sapiens GN=RBM39 PE=1 SV=2
Length = 530
Score = 58.5 bits (140), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 47/77 (61%)
Query: 36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
++VG L ++++E + IF +G I ++ L+ D TG+SKG+ FI + D +++ L
Sbjct: 252 LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQL 311
Query: 96 NGVKVLSRTIRVDHVND 112
NG ++ R ++V HV +
Sbjct: 312 NGFELAGRPMKVGHVTE 328
>sp|Q1LZH0|U1SBP_BOVIN U11/U12 small nuclear ribonucleoprotein 35 kDa protein OS=Bos
taurus GN=SNRNP35 PE=2 SV=1
Length = 245
Score = 58.5 bits (140), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 45/74 (60%)
Query: 36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
+FV L E + +FS+YG+I L LVRD +TG SKG+ FI Y+D+RS + + +
Sbjct: 53 LFVARLNLQTKEEKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKDERSLLKAYRDA 112
Query: 96 NGVKVLSRTIRVDH 109
+G+ + I VD+
Sbjct: 113 DGLVIDQHEIFVDY 126
>sp|Q8VH51|RBM39_MOUSE RNA-binding protein 39 OS=Mus musculus GN=Rbm39 PE=1 SV=2
Length = 530
Score = 58.5 bits (140), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 47/77 (61%)
Query: 36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
++VG L ++++E + IF +G I ++ L+ D TG+SKG+ FI + D +++ L
Sbjct: 252 LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQL 311
Query: 96 NGVKVLSRTIRVDHVND 112
NG ++ R ++V HV +
Sbjct: 312 NGFELAGRPMKVGHVTE 328
>sp|O14979|HNRDL_HUMAN Heterogeneous nuclear ribonucleoprotein D-like OS=Homo sapiens
GN=HNRPDL PE=1 SV=3
Length = 420
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 50/88 (56%), Gaps = 8/88 (9%)
Query: 1 MNPLTNVKNIKKLSEQELSSGSKTSWHDQYKDSAWIFVGGLPYDLSEGDVICIFSQYGEI 60
MN +N+ +E + GSK + +D +F+GGL +D S+ D+ S++GE+
Sbjct: 123 MNEYSNI--------EEFAEGSKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEV 174
Query: 61 VNLNLVRDKITGKSKGFCFICYEDQRST 88
V+ + D +TG+S+GF F+ ++D S
Sbjct: 175 VDCTIKTDPVTGRSRGFGFVLFKDAASV 202
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 30/50 (60%)
Query: 36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQ 85
+FVGGL D SE + F +GEI N+ L D T + +GFCFI Y D+
Sbjct: 235 VFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDE 284
>sp|O13829|RU17_SCHPO U1 small nuclear ribonucleoprotein 70 kDa homolog
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=usp101 PE=1 SV=1
Length = 261
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 43/73 (58%)
Query: 36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
+F+ L YD E D+ F++YG I + +VR+K+TGKS G+ F+ +E +R ++
Sbjct: 102 MFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFERERDLKVAYKAS 161
Query: 96 NGVKVLSRTIRVD 108
G+ + R I VD
Sbjct: 162 AGLMLNGRRIVVD 174
>sp|Q44556|RBPD_NOSS1 Putative RNA-binding protein RbpD OS=Nostoc sp. (strain PCC 7120 /
UTEX 2576) GN=rbpD PE=3 SV=3
Length = 94
Score = 57.8 bits (138), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 48/85 (56%), Gaps = 3/85 (3%)
Query: 36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
I+VG L Y +E D+ +F+ YGE+ + L D+ TG+ +GF F+ + ++ L
Sbjct: 3 IYVGNLSYRATEADLKAVFADYGEVKRVVLPTDRETGRMRGFAFVEMNEDAQEDAAITEL 62
Query: 96 NGVKVLSRTIRVDHVNDYKPPKDNK 120
+G + + R +R VN KP +D++
Sbjct: 63 DGAEWMGRQLR---VNKAKPREDDR 84
>sp|Q9PTX2|CIRBP_LITCT Cold-inducible RNA-binding protein OS=Lithobates catesbeiana
GN=cirbp PE=2 SV=1
Length = 164
Score = 57.8 bits (138), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 47/80 (58%)
Query: 32 DSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLS 91
D +FVGGL +D E + +FS+YG+I + +V+D+ T +S+GF F+ +E+ +
Sbjct: 4 DEGKLFVGGLSFDTDEQCLETVFSKYGQIQEVVVVKDRETKRSRGFGFVTFENCEDAKDA 63
Query: 92 VDNLNGVKVLSRTIRVDHVN 111
+ +NG V R IRVD
Sbjct: 64 MAGMNGKTVDGRQIRVDQAG 83
>sp|Q9Z130|HNRDL_MOUSE Heterogeneous nuclear ribonucleoprotein D-like OS=Mus musculus
GN=Hnrpdl PE=1 SV=1
Length = 301
Score = 57.8 bits (138), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 50/88 (56%), Gaps = 8/88 (9%)
Query: 1 MNPLTNVKNIKKLSEQELSSGSKTSWHDQYKDSAWIFVGGLPYDLSEGDVICIFSQYGEI 60
MN +N+ +E + GSK + +D +F+GGL +D S+ D+ S++GE+
Sbjct: 4 MNEYSNI--------EEFAEGSKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEV 55
Query: 61 VNLNLVRDKITGKSKGFCFICYEDQRST 88
V+ + D +TG+S+GF F+ ++D S
Sbjct: 56 VDCTIKTDPVTGRSRGFGFVLFKDAASV 83
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 30/50 (60%)
Query: 36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQ 85
+FVGGL D SE + F +GEI N+ L D T + +GFCFI Y D+
Sbjct: 116 VFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDE 165
>sp|Q28IQ9|CIRBP_XENTR Cold-inducible RNA-binding protein OS=Xenopus tropicalis GN=cirbp
PE=2 SV=1
Length = 166
Score = 57.4 bits (137), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 48/80 (60%)
Query: 32 DSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLS 91
D +FVGGL ++ +E + +FS+YG++ + +V+D+ + +S+GF F+ +E+ +
Sbjct: 4 DEGKLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDA 63
Query: 92 VDNLNGVKVLSRTIRVDHVN 111
+ +NG V R IRVD
Sbjct: 64 MMAMNGKSVDGRQIRVDQAG 83
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.308 0.127 0.357
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,259,596
Number of Sequences: 539616
Number of extensions: 3343675
Number of successful extensions: 71765
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1740
Number of HSP's successfully gapped in prelim test: 721
Number of HSP's that attempted gapping in prelim test: 43305
Number of HSP's gapped (non-prelim): 18300
length of query: 199
length of database: 191,569,459
effective HSP length: 112
effective length of query: 87
effective length of database: 131,132,467
effective search space: 11408524629
effective search space used: 11408524629
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 58 (26.9 bits)