Query psy1078
Match_columns 199
No_of_seqs 279 out of 1969
Neff 8.8
Searched_HMMs 46136
Date Fri Aug 16 18:18:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1078.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1078hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0126|consensus 100.0 1.2E-29 2.5E-34 188.2 4.8 140 1-140 1-142 (219)
2 PLN03134 glycine-rich RNA-bind 99.8 4.2E-20 9E-25 136.8 13.7 83 31-113 32-114 (144)
3 TIGR01659 sex-lethal sex-letha 99.8 1.2E-19 2.6E-24 151.9 10.8 108 29-143 103-210 (346)
4 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.8 2.3E-19 5.1E-24 150.7 11.4 104 33-143 3-106 (352)
5 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.8 1.1E-18 2.3E-23 146.8 12.0 80 34-113 270-349 (352)
6 TIGR01659 sex-lethal sex-letha 99.8 3.9E-18 8.5E-23 142.8 13.0 114 2-115 158-277 (346)
7 TIGR01645 half-pint poly-U bin 99.8 5.2E-18 1.1E-22 149.7 12.9 111 2-112 158-283 (612)
8 TIGR01645 half-pint poly-U bin 99.8 2.3E-18 5E-23 151.9 10.5 113 31-143 105-221 (612)
9 PF00076 RRM_1: RNA recognitio 99.8 7.8E-18 1.7E-22 108.9 9.9 70 36-106 1-70 (70)
10 KOG0122|consensus 99.8 4.6E-18 9.9E-23 131.9 10.1 88 25-112 181-268 (270)
11 TIGR01648 hnRNP-R-Q heterogene 99.8 8.6E-18 1.9E-22 148.0 12.3 126 4-143 20-155 (578)
12 KOG0148|consensus 99.7 1.1E-17 2.3E-22 131.6 10.8 106 2-113 113-238 (321)
13 KOG0121|consensus 99.7 3.4E-18 7.4E-23 120.5 7.2 83 30-112 33-115 (153)
14 TIGR01622 SF-CC1 splicing fact 99.7 1.3E-16 2.9E-21 138.6 14.7 82 31-112 184-265 (457)
15 KOG0415|consensus 99.7 5.4E-17 1.2E-21 131.9 10.7 96 18-113 224-319 (479)
16 KOG0117|consensus 99.7 5.4E-17 1.2E-21 135.2 10.2 112 18-143 68-181 (506)
17 TIGR01628 PABP-1234 polyadenyl 99.7 6.6E-17 1.4E-21 143.9 11.1 104 35-143 2-105 (562)
18 PLN03120 nucleic acid binding 99.7 1.1E-16 2.4E-21 127.1 11.1 79 33-115 4-82 (260)
19 KOG0131|consensus 99.7 2.7E-17 6E-22 122.5 6.7 104 31-140 7-110 (203)
20 TIGR01622 SF-CC1 splicing fact 99.7 1.1E-16 2.4E-21 139.0 11.6 113 30-143 86-203 (457)
21 KOG0149|consensus 99.7 3.7E-17 7.9E-22 126.3 7.5 79 33-112 12-90 (247)
22 PF14259 RRM_6: RNA recognitio 99.7 2.5E-16 5.4E-21 102.3 10.1 70 36-106 1-70 (70)
23 TIGR01642 U2AF_lg U2 snRNP aux 99.7 2.3E-16 5.1E-21 138.7 13.2 81 33-113 295-375 (509)
24 KOG0127|consensus 99.7 9.7E-17 2.1E-21 136.5 10.2 82 33-115 117-198 (678)
25 TIGR01628 PABP-1234 polyadenyl 99.7 1.1E-16 2.4E-21 142.5 11.2 139 2-143 51-195 (562)
26 KOG0107|consensus 99.7 1.3E-16 2.9E-21 118.2 8.3 77 31-112 8-84 (195)
27 KOG0148|consensus 99.7 1.3E-16 2.8E-21 125.5 7.6 110 33-142 62-180 (321)
28 KOG0113|consensus 99.7 2.5E-16 5.5E-21 125.3 9.3 82 31-112 99-180 (335)
29 KOG4207|consensus 99.7 2E-16 4.4E-21 120.1 6.8 82 31-112 11-92 (256)
30 KOG0145|consensus 99.7 1.8E-16 4E-21 124.2 6.5 113 1-113 91-209 (360)
31 PLN03213 repressor of silencin 99.7 5.2E-16 1.1E-20 131.0 9.5 78 31-112 8-87 (759)
32 KOG0111|consensus 99.6 1.5E-16 3.3E-21 121.9 5.2 87 29-115 6-92 (298)
33 PLN03121 nucleic acid binding 99.6 1.9E-15 4.1E-20 118.4 11.3 81 31-115 3-83 (243)
34 KOG0145|consensus 99.6 1.1E-15 2.3E-20 119.9 9.4 100 34-140 42-141 (360)
35 TIGR01648 hnRNP-R-Q heterogene 99.6 3.5E-15 7.6E-20 131.6 13.4 104 2-113 191-307 (578)
36 KOG0125|consensus 99.6 1.6E-15 3.5E-20 122.2 9.4 80 32-113 95-174 (376)
37 smart00362 RRM_2 RNA recogniti 99.6 3.8E-15 8.3E-20 95.6 9.3 72 35-108 1-72 (72)
38 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.6 5.9E-15 1.3E-19 129.2 12.0 77 31-112 273-350 (481)
39 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.6 4.6E-15 1E-19 129.8 11.1 106 32-143 1-113 (481)
40 KOG0117|consensus 99.6 2.5E-15 5.5E-20 125.3 8.7 139 2-143 134-276 (506)
41 KOG0144|consensus 99.6 1.3E-15 2.9E-20 126.4 6.7 111 4-115 87-208 (510)
42 KOG0130|consensus 99.6 3.5E-15 7.5E-20 106.3 7.2 85 31-115 70-154 (170)
43 COG0724 RNA-binding proteins ( 99.6 9.4E-15 2E-19 116.7 10.3 79 33-111 115-193 (306)
44 smart00360 RRM RNA recognition 99.6 1.2E-14 2.7E-19 92.8 8.5 71 38-108 1-71 (71)
45 KOG0108|consensus 99.6 4.6E-15 9.9E-20 126.5 8.2 80 34-113 19-98 (435)
46 KOG0124|consensus 99.6 1.1E-15 2.4E-20 124.8 3.9 109 33-143 113-227 (544)
47 KOG0123|consensus 99.6 1.5E-14 3.3E-19 122.0 10.0 108 1-113 45-153 (369)
48 KOG0114|consensus 99.6 3.6E-14 7.8E-19 96.7 9.5 80 30-112 15-94 (124)
49 cd00590 RRM RRM (RNA recogniti 99.6 6E-14 1.3E-18 90.4 10.2 74 35-109 1-74 (74)
50 TIGR01642 U2AF_lg U2 snRNP aux 99.5 5.4E-14 1.2E-18 123.7 9.8 108 29-143 171-312 (509)
51 KOG0144|consensus 99.5 2.2E-14 4.9E-19 119.2 6.6 107 31-143 32-141 (510)
52 KOG0105|consensus 99.5 3.2E-14 6.9E-19 106.6 6.4 110 31-143 4-132 (241)
53 KOG0131|consensus 99.5 8E-14 1.7E-18 104.1 6.6 103 10-112 73-176 (203)
54 KOG4205|consensus 99.5 6E-14 1.3E-18 115.1 6.2 110 32-143 5-114 (311)
55 KOG0109|consensus 99.4 1.9E-13 4E-18 108.8 7.0 93 34-143 3-95 (346)
56 PF13893 RRM_5: RNA recognitio 99.4 7.9E-13 1.7E-17 82.1 8.4 56 50-110 1-56 (56)
57 smart00361 RRM_1 RNA recogniti 99.4 7.3E-13 1.6E-17 86.2 8.4 61 47-107 2-69 (70)
58 KOG0147|consensus 99.4 3.7E-13 8E-18 115.0 7.6 79 35-113 280-358 (549)
59 KOG0127|consensus 99.4 3.8E-13 8.2E-18 114.9 7.6 81 33-113 5-85 (678)
60 KOG0146|consensus 99.4 2.8E-13 6E-18 106.8 5.7 85 28-112 280-364 (371)
61 KOG4661|consensus 99.4 2.2E-12 4.8E-17 110.8 9.4 82 31-112 403-484 (940)
62 KOG0124|consensus 99.4 3.2E-12 7E-17 104.7 9.1 110 3-112 165-289 (544)
63 KOG4208|consensus 99.3 5.6E-12 1.2E-16 96.0 8.7 82 31-112 47-129 (214)
64 KOG0110|consensus 99.3 1.3E-12 2.9E-17 114.5 5.7 111 2-112 569-692 (725)
65 KOG0123|consensus 99.3 7E-12 1.5E-16 105.9 8.4 92 34-143 2-93 (369)
66 KOG4206|consensus 99.3 8.2E-12 1.8E-16 96.4 7.7 80 31-113 7-90 (221)
67 KOG0153|consensus 99.3 1.9E-11 4E-16 99.6 9.2 82 26-113 221-303 (377)
68 KOG0132|consensus 99.3 8.9E-12 1.9E-16 110.2 7.9 80 32-117 420-499 (894)
69 KOG0109|consensus 99.2 1.5E-11 3.3E-16 98.0 6.2 99 6-115 49-152 (346)
70 KOG0110|consensus 99.2 6.5E-11 1.4E-15 104.0 9.4 78 34-111 516-596 (725)
71 KOG4212|consensus 99.2 1.3E-10 2.9E-15 97.2 9.2 81 30-111 41-122 (608)
72 KOG0146|consensus 99.2 6.4E-11 1.4E-15 93.6 6.8 81 31-112 17-100 (371)
73 KOG0151|consensus 99.1 2.2E-10 4.7E-15 100.8 8.4 91 25-115 166-259 (877)
74 KOG4212|consensus 99.1 2.3E-10 4.9E-15 95.9 6.7 76 30-110 533-608 (608)
75 KOG0533|consensus 99.1 7.4E-10 1.6E-14 87.9 8.6 82 31-113 81-162 (243)
76 KOG1457|consensus 99.0 1.6E-09 3.4E-14 83.8 9.5 86 32-117 33-122 (284)
77 KOG4205|consensus 99.0 9.8E-10 2.1E-14 90.4 7.0 82 32-114 96-177 (311)
78 KOG0226|consensus 99.0 8.1E-10 1.7E-14 86.8 4.9 94 19-112 171-269 (290)
79 KOG0116|consensus 98.9 2.9E-09 6.2E-14 90.8 7.9 81 31-112 286-366 (419)
80 KOG4209|consensus 98.9 2.1E-09 4.6E-14 85.3 6.2 85 28-113 96-180 (231)
81 KOG0106|consensus 98.9 1.1E-09 2.4E-14 85.2 4.1 71 34-112 2-72 (216)
82 KOG1548|consensus 98.8 1.6E-08 3.5E-13 82.6 8.5 81 31-112 132-220 (382)
83 PF04059 RRM_2: RNA recognitio 98.8 4.4E-08 9.5E-13 67.3 9.1 78 34-111 2-85 (97)
84 KOG4660|consensus 98.8 4.4E-09 9.5E-14 90.5 3.4 71 31-106 73-143 (549)
85 KOG4454|consensus 98.7 3.4E-09 7.3E-14 81.7 1.6 79 31-111 7-85 (267)
86 KOG1190|consensus 98.6 2.4E-07 5.3E-12 77.4 9.5 76 33-113 297-373 (492)
87 KOG0120|consensus 98.6 2.4E-08 5.2E-13 86.4 3.8 83 32-114 288-370 (500)
88 KOG4211|consensus 98.5 8.2E-07 1.8E-11 75.8 9.2 110 30-143 7-120 (510)
89 KOG1995|consensus 98.3 6.7E-07 1.4E-11 73.7 4.5 83 30-112 63-153 (351)
90 KOG0147|consensus 98.3 3.3E-07 7.2E-12 79.0 2.0 114 29-143 175-295 (549)
91 KOG4210|consensus 98.2 1E-06 2.2E-11 72.2 3.8 81 32-113 183-264 (285)
92 PF11608 Limkain-b1: Limkain b 98.2 6.6E-06 1.4E-10 54.4 6.2 68 34-111 3-75 (90)
93 KOG3152|consensus 98.2 1.1E-06 2.5E-11 69.3 2.9 73 32-104 73-157 (278)
94 PF08777 RRM_3: RNA binding mo 98.2 4.3E-06 9.3E-11 58.5 5.5 60 33-98 1-60 (105)
95 COG5175 MOT2 Transcriptional r 98.2 5.4E-06 1.2E-10 68.0 6.7 79 34-112 115-202 (480)
96 KOG0106|consensus 98.2 1.5E-06 3.3E-11 67.8 3.2 71 31-109 97-167 (216)
97 KOG4211|consensus 98.1 9.1E-06 2E-10 69.6 7.9 78 32-111 102-180 (510)
98 KOG1457|consensus 98.1 3.2E-06 6.9E-11 65.7 4.5 64 34-101 211-274 (284)
99 KOG4206|consensus 98.1 1.3E-05 2.9E-10 62.3 8.0 78 29-111 142-220 (221)
100 KOG4849|consensus 98.1 2.3E-06 4.9E-11 70.4 3.4 77 34-110 81-159 (498)
101 KOG2314|consensus 97.9 4.3E-05 9.3E-10 66.6 8.1 78 33-111 58-142 (698)
102 KOG0129|consensus 97.9 6.2E-05 1.3E-09 64.9 8.6 64 31-95 257-326 (520)
103 PF14605 Nup35_RRM_2: Nup53/35 97.9 4E-05 8.7E-10 46.8 4.9 52 34-92 2-53 (53)
104 KOG1548|consensus 97.8 0.00021 4.6E-09 58.9 10.2 78 30-111 262-350 (382)
105 KOG1190|consensus 97.8 7.1E-05 1.5E-09 62.9 7.6 80 29-112 410-490 (492)
106 KOG0112|consensus 97.8 3.8E-05 8.3E-10 70.0 5.5 79 29-113 451-531 (975)
107 KOG0120|consensus 97.7 0.00012 2.7E-09 63.7 7.6 64 49-112 425-491 (500)
108 KOG0128|consensus 97.7 3.3E-05 7.2E-10 70.0 4.1 79 33-112 736-814 (881)
109 PF08952 DUF1866: Domain of un 97.7 0.0003 6.5E-09 51.6 8.3 78 29-115 23-109 (146)
110 PF05172 Nup35_RRM: Nup53/35/4 97.7 0.00026 5.7E-09 48.9 7.4 78 32-111 5-90 (100)
111 KOG4307|consensus 97.7 0.00019 4.1E-09 64.1 8.2 78 32-109 865-943 (944)
112 KOG1456|consensus 97.6 0.00038 8.2E-09 58.1 8.6 78 30-112 284-362 (494)
113 KOG0129|consensus 97.6 0.00022 4.7E-09 61.6 7.1 65 30-94 367-432 (520)
114 KOG4676|consensus 97.5 0.00014 3.1E-09 60.9 4.6 76 35-111 9-87 (479)
115 KOG0112|consensus 97.4 3.3E-05 7.1E-10 70.4 0.4 100 30-139 369-468 (975)
116 KOG2416|consensus 97.4 0.00063 1.4E-08 59.8 7.2 77 30-112 441-521 (718)
117 KOG1456|consensus 97.3 0.0016 3.5E-08 54.4 8.8 80 31-115 118-201 (494)
118 KOG1855|consensus 97.3 0.00029 6.3E-09 59.7 3.8 69 31-99 229-310 (484)
119 PF08675 RNA_bind: RNA binding 97.3 0.0022 4.7E-08 42.5 7.1 57 31-96 7-63 (87)
120 KOG1365|consensus 97.2 0.00077 1.7E-08 56.5 5.4 79 31-110 278-359 (508)
121 KOG0105|consensus 97.2 0.0015 3.3E-08 49.7 6.4 70 33-109 115-186 (241)
122 KOG2193|consensus 97.2 0.00035 7.6E-09 59.2 3.3 72 35-113 3-76 (584)
123 KOG2202|consensus 97.0 0.00029 6.2E-09 56.0 1.4 62 49-111 84-146 (260)
124 KOG0128|consensus 97.0 2.1E-05 4.5E-10 71.3 -5.8 71 31-101 665-735 (881)
125 KOG1365|consensus 96.9 0.0033 7.2E-08 52.8 6.8 69 34-104 162-234 (508)
126 KOG1996|consensus 96.8 0.0044 9.6E-08 50.3 6.9 64 48-111 301-365 (378)
127 KOG4307|consensus 96.8 0.0012 2.5E-08 59.3 3.8 82 31-113 432-514 (944)
128 KOG0115|consensus 96.8 0.0027 5.8E-08 50.6 5.0 80 30-110 28-111 (275)
129 KOG2135|consensus 96.7 0.001 2.2E-08 57.1 2.5 75 31-112 370-445 (526)
130 KOG2068|consensus 96.6 0.00073 1.6E-08 55.7 0.9 79 34-112 78-162 (327)
131 PF10309 DUF2414: Protein of u 96.4 0.022 4.7E-07 35.8 6.4 54 34-95 6-62 (62)
132 PF03467 Smg4_UPF3: Smg-4/UPF3 96.4 0.008 1.7E-07 45.9 5.3 82 31-112 5-97 (176)
133 KOG2253|consensus 96.2 0.0024 5.1E-08 56.9 1.9 75 26-109 33-107 (668)
134 PF07576 BRAP2: BRCA1-associat 96.1 0.095 2.1E-06 36.9 9.1 68 33-102 13-81 (110)
135 KOG4285|consensus 95.9 0.032 6.9E-07 45.6 6.8 72 33-112 197-269 (350)
136 PF15023 DUF4523: Protein of u 95.8 0.052 1.1E-06 39.7 6.8 73 31-111 84-160 (166)
137 PF04847 Calcipressin: Calcipr 95.8 0.035 7.7E-07 42.7 6.3 60 47-112 9-70 (184)
138 KOG4210|consensus 95.2 0.014 3E-07 48.1 2.3 81 32-112 87-167 (285)
139 KOG4660|consensus 94.4 0.07 1.5E-06 46.9 4.8 78 35-112 390-472 (549)
140 PF03880 DbpA: DbpA RNA bindin 94.3 0.3 6.5E-06 31.6 6.7 67 35-110 2-74 (74)
141 PF11767 SET_assoc: Histone ly 94.0 0.41 8.9E-06 30.4 6.6 55 44-107 11-65 (66)
142 KOG2318|consensus 93.2 0.54 1.2E-05 41.9 8.0 80 31-110 172-305 (650)
143 KOG4574|consensus 93.1 0.066 1.4E-06 49.4 2.4 79 28-112 293-373 (1007)
144 KOG0804|consensus 92.8 0.52 1.1E-05 40.8 7.3 69 32-102 73-142 (493)
145 KOG2193|consensus 92.2 0.0061 1.3E-07 51.9 -4.8 104 6-112 50-156 (584)
146 KOG2591|consensus 92.1 0.35 7.5E-06 42.9 5.5 71 29-106 171-245 (684)
147 KOG2891|consensus 90.5 0.11 2.3E-06 42.3 0.8 80 33-112 149-267 (445)
148 KOG4454|consensus 89.5 0.086 1.9E-06 41.3 -0.4 71 34-105 81-155 (267)
149 KOG4676|consensus 86.1 0.12 2.6E-06 43.8 -1.6 63 34-101 152-214 (479)
150 KOG4410|consensus 84.2 2.9 6.3E-05 34.3 5.5 46 34-85 331-377 (396)
151 KOG4019|consensus 81.6 1.3 2.7E-05 33.9 2.4 75 34-114 11-91 (193)
152 COG0724 RNA-binding proteins ( 79.5 3 6.5E-05 32.5 4.1 62 31-92 223-284 (306)
153 KOG2295|consensus 79.0 0.27 5.9E-06 43.5 -2.2 75 31-105 229-303 (648)
154 PF03468 XS: XS domain; Inter 77.7 3.3 7.2E-05 29.3 3.4 55 35-92 10-74 (116)
155 KOG4483|consensus 76.5 6.9 0.00015 33.7 5.4 54 33-93 391-445 (528)
156 PF07530 PRE_C2HC: Associated 71.9 9.1 0.0002 24.3 4.0 61 48-111 2-63 (68)
157 PF09707 Cas_Cas2CT1978: CRISP 66.0 12 0.00027 25.0 3.8 45 36-83 28-72 (86)
158 smart00596 PRE_C2HC PRE_C2HC d 61.5 20 0.00044 22.9 4.0 61 48-111 2-63 (69)
159 COG0030 KsgA Dimethyladenosine 58.3 22 0.00047 28.9 4.7 34 33-66 95-128 (259)
160 PF10567 Nab6_mRNP_bdg: RNA-re 58.3 26 0.00057 28.9 5.1 79 33-111 15-106 (309)
161 PRK11558 putative ssRNA endonu 53.7 20 0.00043 24.6 3.2 48 35-85 29-76 (97)
162 KOG1295|consensus 52.9 22 0.00048 30.3 4.1 69 33-101 7-78 (376)
163 PF15513 DUF4651: Domain of un 52.4 32 0.00069 21.5 3.7 18 48-65 9-26 (62)
164 KOG4365|consensus 51.6 2.3 5E-05 36.9 -1.9 78 34-112 4-81 (572)
165 COG5638 Uncharacterized conser 50.5 61 0.0013 28.2 6.3 81 30-110 143-295 (622)
166 COG5193 LHP1 La protein, small 49.2 7.6 0.00017 33.3 0.8 61 33-93 174-244 (438)
167 KOG0226|consensus 48.8 4.7 0.0001 32.6 -0.5 107 34-142 97-206 (290)
168 PHA02531 20 portal vertex prot 43.9 21 0.00045 31.7 2.6 24 34-57 282-305 (514)
169 PF00398 RrnaAD: Ribosomal RNA 41.4 26 0.00057 28.2 2.8 32 31-62 95-128 (262)
170 KOG4213|consensus 41.1 36 0.00079 26.1 3.2 56 33-94 111-169 (205)
171 PF07230 Peptidase_S80: Bacter 40.7 16 0.00035 32.3 1.5 39 31-73 273-314 (501)
172 PF03439 Spt5-NGN: Early trans 40.7 64 0.0014 21.2 4.1 36 59-99 33-68 (84)
173 PF02714 DUF221: Domain of unk 40.7 34 0.00073 28.3 3.4 32 78-111 1-32 (325)
174 PF07292 NID: Nmi/IFP 35 domai 40.2 45 0.00097 22.4 3.3 65 78-143 1-69 (88)
175 KOG4008|consensus 39.1 27 0.00059 27.9 2.4 36 28-63 35-70 (261)
176 PRK11230 glycolate oxidase sub 38.0 1.3E+02 0.0028 26.9 6.8 64 32-96 188-255 (499)
177 PF05189 RTC_insert: RNA 3'-te 36.8 1.1E+02 0.0025 20.6 5.1 49 35-83 12-65 (103)
178 TIGR01873 cas_CT1978 CRISPR-as 36.0 63 0.0014 21.7 3.4 47 35-84 27-74 (87)
179 COG5507 Uncharacterized conser 34.4 47 0.001 22.8 2.6 21 75-95 66-86 (117)
180 PF11823 DUF3343: Protein of u 33.4 52 0.0011 20.8 2.7 27 76-102 2-28 (73)
181 KOG3116|consensus 29.9 69 0.0015 23.8 3.1 26 84-110 26-53 (177)
182 TIGR00755 ksgA dimethyladenosi 29.8 68 0.0015 25.5 3.4 25 35-59 96-120 (253)
183 PRK00274 ksgA 16S ribosomal RN 29.5 90 0.002 25.3 4.1 22 35-56 107-128 (272)
184 TIGR01228 hutU urocanate hydra 28.0 3.7E+02 0.008 24.3 7.7 89 8-103 61-159 (545)
185 KOG0156|consensus 27.6 1.1E+02 0.0023 27.4 4.5 60 36-105 35-97 (489)
186 PF15407 Spo7_2_N: Sporulation 27.6 27 0.00058 22.2 0.6 24 31-54 25-48 (67)
187 cd00027 BRCT Breast Cancer Sup 26.9 1E+02 0.0022 18.0 3.2 27 34-60 2-28 (72)
188 PRK01178 rps24e 30S ribosomal 26.1 2.2E+02 0.0047 19.6 4.8 46 44-90 30-80 (99)
189 PF15063 TC1: Thyroid cancer p 25.4 39 0.00086 22.0 1.0 41 21-61 13-53 (79)
190 PF09702 Cas_Csa5: CRISPR-asso 24.8 1.4E+02 0.0031 20.6 3.7 22 30-54 61-82 (105)
191 smart00195 DSPc Dual specifici 24.7 2.5E+02 0.0054 19.6 5.6 73 35-111 7-87 (138)
192 PTZ00338 dimethyladenosine tra 24.5 91 0.002 25.8 3.3 28 35-62 103-130 (294)
193 PF07237 DUF1428: Protein of u 23.5 2.6E+02 0.0056 19.4 5.3 46 50-95 25-85 (103)
194 KOG3702|consensus 21.9 53 0.0012 30.2 1.5 70 35-105 513-582 (681)
195 KOG0115|consensus 21.8 1E+02 0.0022 25.1 2.9 45 85-143 4-48 (275)
196 TIGR00387 glcD glycolate oxida 21.3 3.2E+02 0.007 23.5 6.3 64 32-96 130-198 (413)
197 COG0481 LepA Membrane GTPase L 21.0 1.7E+02 0.0038 26.3 4.4 51 32-83 296-348 (603)
198 PF13689 DUF4154: Domain of un 20.4 1.7E+02 0.0037 21.1 3.8 48 60-111 14-61 (145)
199 PF04026 SpoVG: SpoVG; InterP 20.3 2.4E+02 0.0052 18.6 4.1 46 59-111 2-49 (84)
200 PRK11901 hypothetical protein; 20.2 4.4E+02 0.0095 22.3 6.4 63 30-97 242-306 (327)
No 1
>KOG0126|consensus
Probab=99.96 E-value=1.2e-29 Score=188.17 Aligned_cols=140 Identities=66% Similarity=1.173 Sum_probs=133.1
Q ss_pred CCchhhhHHHHhhchhcccCCCC--CccccCCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEE
Q psy1078 1 MNPLTNVKNIKKLSEQELSSGSK--TSWHDQYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFC 78 (199)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~a 78 (199)
|||++.++.+++||.++++.+.+ .+|+..+.++..|||||||+..|+.||...|++||.|+.|.++++..||+++|||
T Consensus 1 mnplt~vk~i~~lne~Elq~g~~~~~SWH~~YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFa 80 (219)
T KOG0126|consen 1 MNPLTNVKNIQKLNERELQLGIADKKSWHQEYKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFA 80 (219)
T ss_pred CchhHHHHHHHHhhHHhhccccccccchhhhcccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceE
Confidence 89999999999999999877654 6999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCHHHHHHHHHhhCCCEeCCeeEEEEeecCCCCCCCCCCChhhccceeeccCCCCCCC
Q psy1078 79 FICYEDQRSTVLSVDNLNGVKVLSRTIRVDHVNDYKPPKDNKYTDEETKKLRTIGCAPGTEF 140 (199)
Q Consensus 79 fV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (199)
|+.|.+..+.-.|+..|||..|.||.|+|++...+..|+..+..+..+..+...++.+....
T Consensus 81 FLcYEDQRSTILAVDN~NGiki~gRtirVDHv~~Yk~pk~~E~~d~~t~~L~~~g~~~~~~~ 142 (219)
T KOG0126|consen 81 FLCYEDQRSTILAVDNLNGIKILGRTIRVDHVSNYKKPKESEEMDAVTKELQEEGCSPKNQS 142 (219)
T ss_pred EEEecCccceEEEEeccCCceecceeEEeeecccccCCchhhhhhHHHHHHhhccCCCCchh
Confidence 99999999999999999999999999999999999999988888889999999998887666
No 2
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.84 E-value=4.2e-20 Score=136.77 Aligned_cols=83 Identities=28% Similarity=0.625 Sum_probs=79.3
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEEee
Q psy1078 31 KDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHV 110 (199)
Q Consensus 31 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~a 110 (199)
..+++|||+|||+.+++++|+.+|.+||.|..|.|+.++.+++++|||||+|.+.++|+.||..||+..|+|+.|+|.|+
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 45778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCC
Q psy1078 111 NDY 113 (199)
Q Consensus 111 ~~~ 113 (199)
...
T Consensus 112 ~~~ 114 (144)
T PLN03134 112 NDR 114 (144)
T ss_pred CcC
Confidence 754
No 3
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.81 E-value=1.2e-19 Score=151.88 Aligned_cols=108 Identities=19% Similarity=0.339 Sum_probs=96.5
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEE
Q psy1078 29 QYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVD 108 (199)
Q Consensus 29 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~ 108 (199)
.....++|||+|||+++|+++|+.+|..||.|..|.|+.+..+++++|||||+|.+.++|..||..||+..|.+++|+|.
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeee
Confidence 44567899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred eecCCCCCCCCCCChhhccceeeccCCCCCCCCCC
Q psy1078 109 HVNDYKPPKDNKYTDEETKKLRTIGCAPGTEFGSI 143 (199)
Q Consensus 109 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (199)
|+.+... ......||+.+++..+++++|
T Consensus 183 ~a~p~~~-------~~~~~~lfV~nLp~~vtee~L 210 (346)
T TIGR01659 183 YARPGGE-------SIKDTNLYVTNLPRTITDDQL 210 (346)
T ss_pred ccccccc-------ccccceeEEeCCCCcccHHHH
Confidence 9875321 112357999999999988777
No 4
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.81 E-value=2.3e-19 Score=150.75 Aligned_cols=104 Identities=26% Similarity=0.438 Sum_probs=93.2
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEEeecC
Q psy1078 33 SAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHVND 112 (199)
Q Consensus 33 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~a~~ 112 (199)
..+|||+|||+.+++++|+.+|..||+|..|.|++++.+|+++|||||+|.+.++|.+||..|||..|.|+.|.|.|+.+
T Consensus 3 ~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~~ 82 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYARP 82 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeecc
Confidence 56899999999999999999999999999999999988999999999999999999999999999999999999999875
Q ss_pred CCCCCCCCCChhhccceeeccCCCCCCCCCC
Q psy1078 113 YKPPKDNKYTDEETKKLRTIGCAPGTEFGSI 143 (199)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (199)
... ......+|+++++..+++..+
T Consensus 83 ~~~-------~~~~~~l~v~~l~~~~~~~~l 106 (352)
T TIGR01661 83 SSD-------SIKGANLYVSGLPKTMTQHEL 106 (352)
T ss_pred ccc-------ccccceEEECCccccCCHHHH
Confidence 332 112357999999998886555
No 5
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.79 E-value=1.1e-18 Score=146.78 Aligned_cols=80 Identities=25% Similarity=0.451 Sum_probs=76.9
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEEeecCC
Q psy1078 34 AWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHVNDY 113 (199)
Q Consensus 34 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~a~~~ 113 (199)
.+|||+|||+.+++++|+.+|++||.|..|.|++++.+|.++|||||+|.+.++|..||..|||..|+|+.|+|.|+.++
T Consensus 270 ~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~~ 349 (352)
T TIGR01661 270 YCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKTNK 349 (352)
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEccCC
Confidence 36999999999999999999999999999999999989999999999999999999999999999999999999998653
No 6
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.77 E-value=3.9e-18 Score=142.80 Aligned_cols=114 Identities=23% Similarity=0.424 Sum_probs=97.3
Q ss_pred CchhhhHHHHhhchhcccC-CCCCccccC---CCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceE
Q psy1078 2 NPLTNVKNIKKLSEQELSS-GSKTSWHDQ---YKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGF 77 (199)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~ 77 (199)
+++.|.+|+..||+..+.. .....|..+ .....+|||+|||+.+++++|+.+|.+||.|..|.|+++..+|+++||
T Consensus 158 ~~e~A~~Ai~~LnG~~l~gr~i~V~~a~p~~~~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~ 237 (346)
T TIGR01659 158 SEADSQRAIKNLNGITVRNKRLKVSYARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGV 237 (346)
T ss_pred cHHHHHHHHHHcCCCccCCceeeeecccccccccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceE
Confidence 5788999999999987543 334443322 234678999999999999999999999999999999999889999999
Q ss_pred EEEEecCHHHHHHHHHhhCCCEeCC--eeEEEEeecCCCC
Q psy1078 78 CFICYEDQRSTVLSVDNLNGVKVLS--RTIRVDHVNDYKP 115 (199)
Q Consensus 78 afV~f~~~~~a~~Ai~~lng~~i~g--~~l~v~~a~~~~~ 115 (199)
|||+|.+.++|++||..||+..|.+ +.|.|.|+.....
T Consensus 238 aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a~~~~~ 277 (346)
T TIGR01659 238 AFVRFNKREEAQEAISALNNVIPEGGSQPLTVRLAEEHGK 277 (346)
T ss_pred EEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCcccc
Confidence 9999999999999999999998876 7899999976443
No 7
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.77 E-value=5.2e-18 Score=149.74 Aligned_cols=111 Identities=25% Similarity=0.370 Sum_probs=95.1
Q ss_pred CchhhhHHHHhhchhcccC-CCCCcccc--------------CCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEe
Q psy1078 2 NPLTNVKNIKKLSEQELSS-GSKTSWHD--------------QYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLV 66 (199)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~--------------~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~ 66 (199)
+++.|.+|+..||+..+.. .....+.. .....++|||+|||+.+++++|+.+|+.||.|..|.|+
T Consensus 158 s~e~A~~Ai~~lnG~~i~GR~IkV~rp~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~ 237 (612)
T TIGR01645 158 VPEAAQLALEQMNGQMLGGRNIKVGRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLA 237 (612)
T ss_pred cHHHHHHHHHhcCCeEEecceeeecccccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEE
Confidence 5788999999999887543 11221111 11234799999999999999999999999999999999
Q ss_pred ecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEEeecC
Q psy1078 67 RDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHVND 112 (199)
Q Consensus 67 ~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~a~~ 112 (199)
+++.+|.++|||||+|.+.++|..||..||+..|+|+.|+|.++..
T Consensus 238 ~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi~ 283 (612)
T TIGR01645 238 RAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVT 283 (612)
T ss_pred ecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecCC
Confidence 9988899999999999999999999999999999999999999875
No 8
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.76 E-value=2.3e-18 Score=151.93 Aligned_cols=113 Identities=23% Similarity=0.433 Sum_probs=95.7
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEEee
Q psy1078 31 KDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHV 110 (199)
Q Consensus 31 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~a 110 (199)
...++|||||||+.+++++|+.+|..||.|..|.|++++.+|+++|||||+|.+.++|.+||..|||..|+|+.|+|.++
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred cCCCCCCCC----CCChhhccceeeccCCCCCCCCCC
Q psy1078 111 NDYKPPKDN----KYTDEETKKLRTIGCAPGTEFGSI 143 (199)
Q Consensus 111 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 143 (199)
......... .........+|++++++..+++.+
T Consensus 185 ~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedL 221 (612)
T TIGR01645 185 SNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDI 221 (612)
T ss_pred ccccccccccccccccccccceEEeecCCCCCCHHHH
Confidence 543211110 011123468999999999887766
No 9
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.76 E-value=7.8e-18 Score=108.90 Aligned_cols=70 Identities=37% Similarity=0.753 Sum_probs=67.2
Q ss_pred EEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEE
Q psy1078 36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIR 106 (199)
Q Consensus 36 l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~ 106 (199)
|||+|||+.+++++|+.+|.+||.|..+.+..+ .++..+|||||+|.+.++|+.|+..|+|..|+|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999987 5799999999999999999999999999999999985
No 10
>KOG0122|consensus
Probab=99.76 E-value=4.6e-18 Score=131.87 Aligned_cols=88 Identities=32% Similarity=0.470 Sum_probs=83.2
Q ss_pred ccccCCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCee
Q psy1078 25 SWHDQYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRT 104 (199)
Q Consensus 25 ~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~ 104 (199)
++.....|.++|-|.|||.++++.+|+.+|.+||.|..|.|.++..||.++|||||.|.++++|.+||..|||+-++.-.
T Consensus 181 ~~~R~R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LI 260 (270)
T KOG0122|consen 181 SDMRERDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLI 260 (270)
T ss_pred cccccCCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEE
Confidence 34455568899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeecC
Q psy1078 105 IRVDHVND 112 (199)
Q Consensus 105 l~v~~a~~ 112 (199)
|+|.|+.|
T Consensus 261 LrvEwskP 268 (270)
T KOG0122|consen 261 LRVEWSKP 268 (270)
T ss_pred EEEEecCC
Confidence 99999976
No 11
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.75 E-value=8.6e-18 Score=147.96 Aligned_cols=126 Identities=23% Similarity=0.390 Sum_probs=102.8
Q ss_pred hhhhHHHHhhchhcccC--------CCCCccccC-CCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCc
Q psy1078 4 LTNVKNIKKLSEQELSS--------GSKTSWHDQ-YKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKS 74 (199)
Q Consensus 4 ~~~~~~~~~~~~~~~~~--------~~~~~~~~~-~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~ 74 (199)
..|++||.++++-.+.. .+...|... ....++|||+|||+++++++|+.+|.+||.|..|+|+++ .+|.+
T Consensus 20 ~~a~~a~~~~~gy~~~~~~g~r~~g~Pp~~~~~~~p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~s 98 (578)
T TIGR01648 20 EAALKALLERTGYTLVQENGQRKYGGPPPGWSGVQPGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQN 98 (578)
T ss_pred HHHHHHHHHhhCccccccCCcccCCCCCCcccCCCCCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCc
Confidence 45778888777665322 122335433 344689999999999999999999999999999999999 69999
Q ss_pred ceEEEEEecCHHHHHHHHHhhCCCEeC-CeeEEEEeecCCCCCCCCCCChhhccceeeccCCCCCCCCCC
Q psy1078 75 KGFCFICYEDQRSTVLSVDNLNGVKVL-SRTIRVDHVNDYKPPKDNKYTDEETKKLRTIGCAPGTEFGSI 143 (199)
Q Consensus 75 ~g~afV~f~~~~~a~~Ai~~lng~~i~-g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (199)
+|||||+|.+.++|++||..||+..|. |+.|.|.++.. ...||+++++...+.+.+
T Consensus 99 RGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S~~-------------~~rLFVgNLP~~~TeeeL 155 (578)
T TIGR01648 99 RGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCISVD-------------NCRLFVGGIPKNKKREEI 155 (578)
T ss_pred cceEEEEeCCHHHHHHHHHHcCCCeecCCcccccccccc-------------CceeEeecCCcchhhHHH
Confidence 999999999999999999999999885 88888877532 357999999988877666
No 12
>KOG0148|consensus
Probab=99.75 E-value=1.1e-17 Score=131.55 Aligned_cols=106 Identities=20% Similarity=0.410 Sum_probs=95.6
Q ss_pred CchhhhHHHHhhchhcccC-CCCCcccc-------------------CCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeE
Q psy1078 2 NPLTNVKNIKKLSEQELSS-GSKTSWHD-------------------QYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIV 61 (199)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~-------------------~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~ 61 (199)
|..+|..||+.||++=++. .++.+|.- ..+++++|||||++..+++++|+..|++||+|.
T Consensus 113 ~k~dAEnAI~~MnGqWlG~R~IRTNWATRKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~ 192 (321)
T KOG0148|consen 113 NKEDAENAIQQMNGQWLGRRTIRTNWATRKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQ 192 (321)
T ss_pred chHHHHHHHHHhCCeeeccceeeccccccCccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcce
Confidence 5678999999999998875 56777763 235789999999999999999999999999999
Q ss_pred EEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEEeecCC
Q psy1078 62 NLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHVNDY 113 (199)
Q Consensus 62 ~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~a~~~ 113 (199)
+|+|..+ +||+||.|.+.+.|..||-.||+..|.|+.+++.|.+..
T Consensus 193 EVRvFk~------qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsWGKe~ 238 (321)
T KOG0148|consen 193 EVRVFKD------QGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWGKEG 238 (321)
T ss_pred EEEEecc------cceEEEEecchhhHHHHHHHhcCceeCceEEEEeccccC
Confidence 9999988 699999999999999999999999999999999998753
No 13
>KOG0121|consensus
Probab=99.75 E-value=3.4e-18 Score=120.52 Aligned_cols=83 Identities=24% Similarity=0.491 Sum_probs=78.6
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEEe
Q psy1078 30 YKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDH 109 (199)
Q Consensus 30 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~ 109 (199)
...+++||||||++.+++++|.++|+.+|+|..|.|-.++.+-.+.|||||+|.+.++|+.|+..++|..++.+.|+|+|
T Consensus 33 ~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~ 112 (153)
T KOG0121|consen 33 LRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDW 112 (153)
T ss_pred HhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeec
Confidence 46789999999999999999999999999999999999988888999999999999999999999999999999999999
Q ss_pred ecC
Q psy1078 110 VND 112 (199)
Q Consensus 110 a~~ 112 (199)
-..
T Consensus 113 D~G 115 (153)
T KOG0121|consen 113 DAG 115 (153)
T ss_pred ccc
Confidence 643
No 14
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.72 E-value=1.3e-16 Score=138.58 Aligned_cols=82 Identities=32% Similarity=0.613 Sum_probs=78.2
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEEee
Q psy1078 31 KDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHV 110 (199)
Q Consensus 31 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~a 110 (199)
+..++|||+|||..+++++|..+|..||.|..|.|+.++.+|.++|||||+|.+.++|..|+..|||..|.|+.|.|.|+
T Consensus 184 p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a 263 (457)
T TIGR01622 184 PNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYA 263 (457)
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEc
Confidence 34689999999999999999999999999999999999888999999999999999999999999999999999999998
Q ss_pred cC
Q psy1078 111 ND 112 (199)
Q Consensus 111 ~~ 112 (199)
..
T Consensus 264 ~~ 265 (457)
T TIGR01622 264 QD 265 (457)
T ss_pred cC
Confidence 64
No 15
>KOG0415|consensus
Probab=99.71 E-value=5.4e-17 Score=131.87 Aligned_cols=96 Identities=27% Similarity=0.366 Sum_probs=87.8
Q ss_pred ccCCCCCccccCCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCC
Q psy1078 18 LSSGSKTSWHDQYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNG 97 (199)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng 97 (199)
+.+.+..+..+..++...|||+.|++.||+++|..+|+.||.|..|.|+++..||.+..||||+|.+.++|++|...|++
T Consensus 224 LEmvGDlpdAd~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdN 303 (479)
T KOG0415|consen 224 LEMVGDLPDADVKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDN 303 (479)
T ss_pred HHHhcCCcccccCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcc
Confidence 33344555566778889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEeCCeeEEEEeecCC
Q psy1078 98 VKVLSRTIRVDHVNDY 113 (199)
Q Consensus 98 ~~i~g~~l~v~~a~~~ 113 (199)
..|+.++|+|+|+++.
T Consensus 304 vLIDDrRIHVDFSQSV 319 (479)
T KOG0415|consen 304 VLIDDRRIHVDFSQSV 319 (479)
T ss_pred eeeccceEEeehhhhh
Confidence 9999999999998764
No 16
>KOG0117|consensus
Probab=99.71 E-value=5.4e-17 Score=135.15 Aligned_cols=112 Identities=19% Similarity=0.368 Sum_probs=96.6
Q ss_pred ccCCCCCccccC-CCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhC
Q psy1078 18 LSSGSKTSWHDQ-YKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLN 96 (199)
Q Consensus 18 ~~~~~~~~~~~~-~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~ln 96 (199)
.+.++.. |..+ ++.+|-||||.||.++.|++|.-+|.+.|+|-.++|+.++.+|.++|||||+|.+.+.|+.||..||
T Consensus 68 ~ggPpP~-weg~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~ln 146 (506)
T KOG0117|consen 68 YGGPPPG-WEGPPPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELN 146 (506)
T ss_pred cCCCCCc-ccCCCCCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhh
Confidence 3334343 6543 4778999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEeC-CeeEEEEeecCCCCCCCCCCChhhccceeeccCCCCCCCCCC
Q psy1078 97 GVKVL-SRTIRVDHVNDYKPPKDNKYTDEETKKLRTIGCAPGTEFGSI 143 (199)
Q Consensus 97 g~~i~-g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (199)
+++|. |+.|.|..+.. ..+||+++++..-..+.|
T Consensus 147 n~Eir~GK~igvc~Sva-------------n~RLFiG~IPK~k~keeI 181 (506)
T KOG0117|consen 147 NYEIRPGKLLGVCVSVA-------------NCRLFIGNIPKTKKKEEI 181 (506)
T ss_pred CccccCCCEeEEEEeee-------------cceeEeccCCccccHHHH
Confidence 99996 99999998654 357898888777666555
No 17
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.71 E-value=6.6e-17 Score=143.92 Aligned_cols=104 Identities=14% Similarity=0.337 Sum_probs=90.6
Q ss_pred EEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEEeecCCC
Q psy1078 35 WIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHVNDYK 114 (199)
Q Consensus 35 ~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~a~~~~ 114 (199)
+|||||||+++|+++|+.+|+.||.|..|.|+++..+++++|||||+|.+.++|++||..||+..|.|+.|+|.|+....
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~ 81 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDP 81 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccc
Confidence 69999999999999999999999999999999999899999999999999999999999999999999999999975321
Q ss_pred CCCCCCCChhhccceeeccCCCCCCCCCC
Q psy1078 115 PPKDNKYTDEETKKLRTIGCAPGTEFGSI 143 (199)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (199)
. ........+|+++++..+++..+
T Consensus 82 ~-----~~~~~~~~vfV~nLp~~~~~~~L 105 (562)
T TIGR01628 82 S-----LRRSGVGNIFVKNLDKSVDNKAL 105 (562)
T ss_pred c-----ccccCCCceEEcCCCccCCHHHH
Confidence 1 11223457999999988776554
No 18
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.71 E-value=1.1e-16 Score=127.09 Aligned_cols=79 Identities=15% Similarity=0.369 Sum_probs=72.8
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEEeecC
Q psy1078 33 SAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHVND 112 (199)
Q Consensus 33 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~a~~ 112 (199)
.++|||+|||+.+++++|+.+|+.||.|..|.|+.++ ..+|||||+|.+.++|+.|| .|||..|.|+.|.|.++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~---~~~GfAFVtF~d~eaAe~Al-lLnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSEN---ERSQIAYVTFKDPQGAETAL-LLSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecC---CCCCEEEEEeCcHHHHHHHH-HhcCCeeCCceEEEEeccC
Confidence 5789999999999999999999999999999999875 35799999999999999999 6999999999999999876
Q ss_pred CCC
Q psy1078 113 YKP 115 (199)
Q Consensus 113 ~~~ 115 (199)
+..
T Consensus 80 ~~~ 82 (260)
T PLN03120 80 YQL 82 (260)
T ss_pred CCC
Confidence 644
No 19
>KOG0131|consensus
Probab=99.70 E-value=2.7e-17 Score=122.48 Aligned_cols=104 Identities=26% Similarity=0.386 Sum_probs=91.8
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEEee
Q psy1078 31 KDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHV 110 (199)
Q Consensus 31 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~a 110 (199)
....+||||||+..++++.|.++|-+.|+|..+.+++++.++..+|||||+|.+.++|+.||+-||...+.|++|+|..+
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCCCCCCCCChhhccceeeccCCCCCCC
Q psy1078 111 NDYKPPKDNKYTDEETKKLRTIGCAPGTEF 140 (199)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (199)
...+.. -....++|++++.+...+
T Consensus 87 s~~~~n------l~vganlfvgNLd~~vDe 110 (203)
T KOG0131|consen 87 SAHQKN------LDVGANLFVGNLDPEVDE 110 (203)
T ss_pred cccccc------ccccccccccccCcchhH
Confidence 732221 223478999999986553
No 20
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.70 E-value=1.1e-16 Score=139.05 Aligned_cols=113 Identities=21% Similarity=0.260 Sum_probs=93.8
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEEe
Q psy1078 30 YKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDH 109 (199)
Q Consensus 30 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~ 109 (199)
..+.++|||+|||+.+++++|..+|..||.|..|.|+.++.+|.++|||||+|.+.++|.+|| .|+|..|.|+.|.|.+
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al-~l~g~~~~g~~i~v~~ 164 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKAL-ALTGQMLLGRPIIVQS 164 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHH-HhCCCEECCeeeEEee
Confidence 356789999999999999999999999999999999999889999999999999999999999 6999999999999998
Q ss_pred ecCCCCCCC-----CCCChhhccceeeccCCCCCCCCCC
Q psy1078 110 VNDYKPPKD-----NKYTDEETKKLRTIGCAPGTEFGSI 143 (199)
Q Consensus 110 a~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (199)
+........ ..........||+++++..+++..+
T Consensus 165 ~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l 203 (457)
T TIGR01622 165 SQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQEL 203 (457)
T ss_pred cchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHH
Confidence 653211110 0011122478999999998887665
No 21
>KOG0149|consensus
Probab=99.70 E-value=3.7e-17 Score=126.34 Aligned_cols=79 Identities=29% Similarity=0.495 Sum_probs=73.0
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEEeecC
Q psy1078 33 SAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHVND 112 (199)
Q Consensus 33 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~a~~ 112 (199)
-.+||||||+|.+..+.|+.+|.+||+|.++.|+.|+.+|+++|||||+|.+.++|.+|+...| -.|+||+..+..|.-
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~-piIdGR~aNcnlA~l 90 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPN-PIIDGRKANCNLASL 90 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCC-Ccccccccccchhhh
Confidence 3589999999999999999999999999999999999999999999999999999999997655 679999988888754
No 22
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.70 E-value=2.5e-16 Score=102.28 Aligned_cols=70 Identities=27% Similarity=0.631 Sum_probs=65.0
Q ss_pred EEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEE
Q psy1078 36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIR 106 (199)
Q Consensus 36 l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~ 106 (199)
|||+|||+.+++++|..+|..||.|..+.+..++. |..+|+|||+|.+.++|..|+..++|..|+|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999875 89999999999999999999999999999999874
No 23
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.70 E-value=2.3e-16 Score=138.69 Aligned_cols=81 Identities=28% Similarity=0.516 Sum_probs=77.4
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEEeecC
Q psy1078 33 SAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHVND 112 (199)
Q Consensus 33 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~a~~ 112 (199)
..+|||+|||+.+++++|+.+|..||.|..+.|+.+..+|.++|||||+|.+...|..||..|||..|+|+.|.|.++..
T Consensus 295 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~ 374 (509)
T TIGR01642 295 KDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACV 374 (509)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECcc
Confidence 46899999999999999999999999999999999988999999999999999999999999999999999999999865
Q ss_pred C
Q psy1078 113 Y 113 (199)
Q Consensus 113 ~ 113 (199)
.
T Consensus 375 ~ 375 (509)
T TIGR01642 375 G 375 (509)
T ss_pred C
Confidence 3
No 24
>KOG0127|consensus
Probab=99.70 E-value=9.7e-17 Score=136.53 Aligned_cols=82 Identities=26% Similarity=0.532 Sum_probs=76.7
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEEeecC
Q psy1078 33 SAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHVND 112 (199)
Q Consensus 33 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~a~~ 112 (199)
-.+|+|+||||.+...+|..+|+.||.|..|.||+.+ .|+.+|||||+|....+|..||..|||..|+||+|.|+||.+
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~-dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~ 195 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKK-DGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVD 195 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCC-CCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecc
Confidence 5789999999999999999999999999999999776 677789999999999999999999999999999999999987
Q ss_pred CCC
Q psy1078 113 YKP 115 (199)
Q Consensus 113 ~~~ 115 (199)
+..
T Consensus 196 Kd~ 198 (678)
T KOG0127|consen 196 KDT 198 (678)
T ss_pred ccc
Confidence 543
No 25
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.70 E-value=1.1e-16 Score=142.45 Aligned_cols=139 Identities=18% Similarity=0.357 Sum_probs=111.4
Q ss_pred CchhhhHHHHhhchhcccC-CCCCccccCC-----CCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcc
Q psy1078 2 NPLTNVKNIKKLSEQELSS-GSKTSWHDQY-----KDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSK 75 (199)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-----~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~ 75 (199)
++++|.+|+..+|+..+.. .....|.... ....+|||+|||.++++++|+.+|+.||.|..|.|+.+. +|+++
T Consensus 51 ~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~~~~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~-~g~sk 129 (562)
T TIGR01628 51 NPADAERALETMNFKRLGGKPIRIMWSQRDPSLRRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDE-NGKSR 129 (562)
T ss_pred CHHHHHHHHHHhCCCEECCeeEEeecccccccccccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecC-CCCcc
Confidence 6889999999999986443 4455554321 234679999999999999999999999999999999885 78999
Q ss_pred eEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEEeecCCCCCCCCCCChhhccceeeccCCCCCCCCCC
Q psy1078 76 GFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHVNDYKPPKDNKYTDEETKKLRTIGCAPGTEFGSI 143 (199)
Q Consensus 76 g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (199)
|||||.|.+.++|..|+..|||..+.|+.|.|.+........ .........+|+++++..++++.+
T Consensus 130 g~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v~~~~~~~~~~--~~~~~~~~~l~V~nl~~~~tee~L 195 (562)
T TIGR01628 130 GYGFVHFEKEESAKAAIQKVNGMLLNDKEVYVGRFIKKHERE--AAPLKKFTNLYVKNLDPSVNEDKL 195 (562)
T ss_pred cEEEEEECCHHHHHHHHHHhcccEecCceEEEeccccccccc--cccccCCCeEEEeCCCCcCCHHHH
Confidence 999999999999999999999999999999998765432221 112234467999999988886655
No 26
>KOG0107|consensus
Probab=99.68 E-value=1.3e-16 Score=118.17 Aligned_cols=77 Identities=26% Similarity=0.485 Sum_probs=72.7
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEEee
Q psy1078 31 KDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHV 110 (199)
Q Consensus 31 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~a 110 (199)
.-.++||||||+..+++.+|+.+|..||+|..|-|.+.+ .|||||+|.++.+|+.|+..|+|..|.|..|+|+++
T Consensus 8 ~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP-----PGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S 82 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP-----PGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELS 82 (195)
T ss_pred CCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC-----CCceEEeccCcccHHHHHhhcCCccccCceEEEEee
Confidence 457899999999999999999999999999999888776 799999999999999999999999999999999998
Q ss_pred cC
Q psy1078 111 ND 112 (199)
Q Consensus 111 ~~ 112 (199)
..
T Consensus 83 ~G 84 (195)
T KOG0107|consen 83 TG 84 (195)
T ss_pred cC
Confidence 65
No 27
>KOG0148|consensus
Probab=99.67 E-value=1.3e-16 Score=125.55 Aligned_cols=110 Identities=23% Similarity=0.397 Sum_probs=90.3
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEEeecC
Q psy1078 33 SAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHVND 112 (199)
Q Consensus 33 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~a~~ 112 (199)
...||||.|...++-++|++.|.+||+|.+++|++|..|++++|||||.|.+.++|+.||..|||..|++|.|+..||..
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATR 141 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATR 141 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccccc
Confidence 34699999999999999999999999999999999999999999999999999999999999999999999999999964
Q ss_pred CCCCCCCC---------CChhhccceeeccCCCCCCCCC
Q psy1078 113 YKPPKDNK---------YTDEETKKLRTIGCAPGTEFGS 142 (199)
Q Consensus 113 ~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~ 142 (199)
+....... ........++++++....+++.
T Consensus 142 Kp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~ 180 (321)
T KOG0148|consen 142 KPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDL 180 (321)
T ss_pred CccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHH
Confidence 32111000 0012234678888887555443
No 28
>KOG0113|consensus
Probab=99.67 E-value=2.5e-16 Score=125.33 Aligned_cols=82 Identities=40% Similarity=0.625 Sum_probs=78.4
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEEee
Q psy1078 31 KDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHV 110 (199)
Q Consensus 31 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~a 110 (199)
.+-+||||+-|+..+++..|+..|..||+|..|.|+++..||+++|||||+|.+..+...|.+..+|..|+|+.|.|++-
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvE 178 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVE 178 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEec
Confidence 34589999999999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred cC
Q psy1078 111 ND 112 (199)
Q Consensus 111 ~~ 112 (199)
..
T Consensus 179 Rg 180 (335)
T KOG0113|consen 179 RG 180 (335)
T ss_pred cc
Confidence 54
No 29
>KOG4207|consensus
Probab=99.66 E-value=2e-16 Score=120.09 Aligned_cols=82 Identities=27% Similarity=0.512 Sum_probs=78.2
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEEee
Q psy1078 31 KDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHV 110 (199)
Q Consensus 31 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~a 110 (199)
..-..|-|-||.+.|+.++|+.+|.+||.|-+|.|++++.|+.++|||||.|....+|+.|+..|+|..|+|+.|.|.+|
T Consensus 11 ~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~a 90 (256)
T KOG4207|consen 11 EGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMA 90 (256)
T ss_pred ccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhh
Confidence 44567999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cC
Q psy1078 111 ND 112 (199)
Q Consensus 111 ~~ 112 (199)
.-
T Consensus 91 ry 92 (256)
T KOG4207|consen 91 RY 92 (256)
T ss_pred hc
Confidence 74
No 30
>KOG0145|consensus
Probab=99.65 E-value=1.8e-16 Score=124.19 Aligned_cols=113 Identities=27% Similarity=0.456 Sum_probs=101.6
Q ss_pred CCchhhhHHHHhhchhcccC-CCCCccccCCC---CCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcce
Q psy1078 1 MNPLTNVKNIKKLSEQELSS-GSKTSWHDQYK---DSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKG 76 (199)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g 76 (199)
.+|.+|.+|+..||+.+++. .++.++.++.. ....|||++||..+|..+|+.+|++||.|...+|+.+..+|.++|
T Consensus 91 v~p~DAe~AintlNGLrLQ~KTIKVSyARPSs~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srG 170 (360)
T KOG0145|consen 91 VRPKDAEKAINTLNGLRLQNKTIKVSYARPSSDSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRG 170 (360)
T ss_pred cChHHHHHHHhhhcceeeccceEEEEeccCChhhhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecc
Confidence 47899999999999999886 55778877664 457899999999999999999999999999999999999999999
Q ss_pred EEEEEecCHHHHHHHHHhhCCCEeCCe--eEEEEeecCC
Q psy1078 77 FCFICYEDQRSTVLSVDNLNGVKVLSR--TIRVDHVNDY 113 (199)
Q Consensus 77 ~afV~f~~~~~a~~Ai~~lng~~i~g~--~l~v~~a~~~ 113 (199)
.|||.|..+..|+.||..|||..-.|. +|.|.|+...
T Consensus 171 VgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFannP 209 (360)
T KOG0145|consen 171 VGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFANNP 209 (360)
T ss_pred eeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEecCCc
Confidence 999999999999999999999887764 6999999763
No 31
>PLN03213 repressor of silencing 3; Provisional
Probab=99.65 E-value=5.2e-16 Score=130.97 Aligned_cols=78 Identities=22% Similarity=0.435 Sum_probs=72.2
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCH--HHHHHHHHhhCCCEeCCeeEEEE
Q psy1078 31 KDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQ--RSTVLSVDNLNGVKVLSRTIRVD 108 (199)
Q Consensus 31 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~--~~a~~Ai~~lng~~i~g~~l~v~ 108 (199)
....+||||||++.+++++|+.+|..||.|..|.|+ +.+| +|||||+|... ..+.+||..|||..+.|+.|+|.
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIp--RETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVN 83 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFV--RTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLE 83 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEe--cccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEe
Confidence 345789999999999999999999999999999999 4467 99999999987 78999999999999999999999
Q ss_pred eecC
Q psy1078 109 HVND 112 (199)
Q Consensus 109 ~a~~ 112 (199)
.|++
T Consensus 84 KAKP 87 (759)
T PLN03213 84 KAKE 87 (759)
T ss_pred eccH
Confidence 9976
No 32
>KOG0111|consensus
Probab=99.65 E-value=1.5e-16 Score=121.89 Aligned_cols=87 Identities=26% Similarity=0.494 Sum_probs=82.1
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEE
Q psy1078 29 QYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVD 108 (199)
Q Consensus 29 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~ 108 (199)
.....++||||+|...+++.-|...|-+||.|..|.++.+-.++++||||||+|.-.++|.+||..||+..|.||.|+|.
T Consensus 6 ~a~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN 85 (298)
T KOG0111|consen 6 MANQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVN 85 (298)
T ss_pred ccccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEe
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCC
Q psy1078 109 HVNDYKP 115 (199)
Q Consensus 109 ~a~~~~~ 115 (199)
+|.|.+.
T Consensus 86 ~AkP~ki 92 (298)
T KOG0111|consen 86 LAKPEKI 92 (298)
T ss_pred ecCCccc
Confidence 9988554
No 33
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.64 E-value=1.9e-15 Score=118.44 Aligned_cols=81 Identities=20% Similarity=0.340 Sum_probs=73.6
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEEee
Q psy1078 31 KDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHV 110 (199)
Q Consensus 31 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~a 110 (199)
+.+.+|||+||++.+|+++|+.+|+.||.|..|.|+++ +...|||||+|.++.+|+.|+ .|+|..|.++.|.|...
T Consensus 3 ~~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D---~et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~ 78 (243)
T PLN03121 3 PGGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRS---GEYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRW 78 (243)
T ss_pred CCceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecC---CCcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeC
Confidence 56789999999999999999999999999999999987 445689999999999999999 89999999999999987
Q ss_pred cCCCC
Q psy1078 111 NDYKP 115 (199)
Q Consensus 111 ~~~~~ 115 (199)
..+..
T Consensus 79 ~~y~~ 83 (243)
T PLN03121 79 GQYED 83 (243)
T ss_pred ccccc
Confidence 66543
No 34
>KOG0145|consensus
Probab=99.64 E-value=1.1e-15 Score=119.95 Aligned_cols=100 Identities=27% Similarity=0.464 Sum_probs=89.3
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEEeecCC
Q psy1078 34 AWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHVNDY 113 (199)
Q Consensus 34 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~a~~~ 113 (199)
..|+|.-||..+|+++|+.+|...|+|.+|++++|+.+|++.|||||.|.++.+|++||..|||..+..+.|+|.||.+.
T Consensus 42 TNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyARPS 121 (360)
T KOG0145|consen 42 TNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYARPS 121 (360)
T ss_pred ceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEeccCC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999863
Q ss_pred CCCCCCCCChhhccceeeccCCCCCCC
Q psy1078 114 KPPKDNKYTDEETKKLRTIGCAPGTEF 140 (199)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (199)
.. .-....+++.|++..++.
T Consensus 122 s~-------~Ik~aNLYvSGlPktMtq 141 (360)
T KOG0145|consen 122 SD-------SIKDANLYVSGLPKTMTQ 141 (360)
T ss_pred hh-------hhcccceEEecCCccchH
Confidence 21 223457888888776663
No 35
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.64 E-value=3.5e-15 Score=131.59 Aligned_cols=104 Identities=18% Similarity=0.346 Sum_probs=84.6
Q ss_pred CchhhhHHHHhhchhcc---cCCCCCccccC--------CCCCcEEEEeCCCCCCCHHHHHHHhccC--CCeEEEEEeec
Q psy1078 2 NPLTNVKNIKKLSEQEL---SSGSKTSWHDQ--------YKDSAWIFVGGLPYDLSEGDVICIFSQY--GEIVNLNLVRD 68 (199)
Q Consensus 2 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~--------~~~~~~l~V~nLp~~~te~~L~~~F~~~--G~i~~~~~~~~ 68 (199)
++.+|.+|+.+|+...+ +......|..+ .....+|||+|||+.+++++|+.+|..| |.|..|.++
T Consensus 191 s~edAa~AirkL~~gki~l~Gr~I~VdwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~-- 268 (578)
T TIGR01648 191 SHRAAAMARRKLMPGRIQLWGHVIAVDWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI-- 268 (578)
T ss_pred CHHHHHHHHHHhhccceEecCceEEEEeecccccccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee--
Confidence 56788889888765432 22223333322 1235789999999999999999999999 999999775
Q ss_pred CCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEEeecCC
Q psy1078 69 KITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHVNDY 113 (199)
Q Consensus 69 ~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~a~~~ 113 (199)
++||||+|.+.++|.+||..|||..|+|+.|.|.|+.+.
T Consensus 269 ------rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp~ 307 (578)
T TIGR01648 269 ------RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAKPV 307 (578)
T ss_pred ------cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEccCC
Confidence 469999999999999999999999999999999999764
No 36
>KOG0125|consensus
Probab=99.63 E-value=1.6e-15 Score=122.18 Aligned_cols=80 Identities=21% Similarity=0.495 Sum_probs=75.0
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEEeec
Q psy1078 32 DSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHVN 111 (199)
Q Consensus 32 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~a~ 111 (199)
...+|||+|||+...+.||+.+|.+||.|.+|.|+.+- ..++|||||+|.+.++|++|-..|||..|.||+|.|..|.
T Consensus 95 ~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~AT 172 (376)
T KOG0125|consen 95 TPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNAT 172 (376)
T ss_pred CCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccc
Confidence 35789999999999999999999999999999999874 6789999999999999999999999999999999999997
Q ss_pred CC
Q psy1078 112 DY 113 (199)
Q Consensus 112 ~~ 113 (199)
..
T Consensus 173 ar 174 (376)
T KOG0125|consen 173 AR 174 (376)
T ss_pred hh
Confidence 64
No 37
>smart00362 RRM_2 RNA recognition motif.
Probab=99.62 E-value=3.8e-15 Score=95.58 Aligned_cols=72 Identities=39% Similarity=0.747 Sum_probs=67.6
Q ss_pred EEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEE
Q psy1078 35 WIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVD 108 (199)
Q Consensus 35 ~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~ 108 (199)
+|||+|||..++.++|+.+|..||.|..+.+..++ +.++|+|||+|.+...|..|+..++|..|.|+.|.|.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999998776 7889999999999999999999999999999998873
No 38
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.61 E-value=5.9e-15 Score=129.19 Aligned_cols=77 Identities=23% Similarity=0.445 Sum_probs=71.7
Q ss_pred CCCcEEEEeCCCC-CCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEEe
Q psy1078 31 KDSAWIFVGGLPY-DLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDH 109 (199)
Q Consensus 31 ~~~~~l~V~nLp~-~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~ 109 (199)
+.+++|||+|||+ .+++++|+.+|+.||.|..|.|+.+. +|||||+|.+.++|..||..|||..|.|+.|+|.+
T Consensus 273 ~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~ 347 (481)
T TIGR01649 273 GPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVCP 347 (481)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence 3567999999998 69999999999999999999998774 69999999999999999999999999999999999
Q ss_pred ecC
Q psy1078 110 VND 112 (199)
Q Consensus 110 a~~ 112 (199)
+..
T Consensus 348 s~~ 350 (481)
T TIGR01649 348 SKQ 350 (481)
T ss_pred ccc
Confidence 854
No 39
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.61 E-value=4.6e-15 Score=129.85 Aligned_cols=106 Identities=13% Similarity=0.174 Sum_probs=84.6
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHh--hCCCEeCCeeEEEEe
Q psy1078 32 DSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDN--LNGVKVLSRTIRVDH 109 (199)
Q Consensus 32 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~--lng~~i~g~~l~v~~ 109 (199)
++++|||+|||+.+++++|+.+|.+||.|..|.|+.+ +|||||+|.+.++|..||.. +++..|.|+.|.|.|
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~ 74 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG------KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNY 74 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC------CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEe
Confidence 4679999999999999999999999999999999854 58999999999999999986 478999999999999
Q ss_pred ecCCCCCCCC-----CCChhhccceeeccCCCCCCCCCC
Q psy1078 110 VNDYKPPKDN-----KYTDEETKKLRTIGCAPGTEFGSI 143 (199)
Q Consensus 110 a~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 143 (199)
+......... .........+++.++...++++.+
T Consensus 75 s~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L 113 (481)
T TIGR01649 75 STSQEIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVL 113 (481)
T ss_pred cCCcccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHH
Confidence 8754322111 001122346788998877776554
No 40
>KOG0117|consensus
Probab=99.60 E-value=2.5e-15 Score=125.27 Aligned_cols=139 Identities=19% Similarity=0.308 Sum_probs=111.6
Q ss_pred CchhhhHHHHhhchhcccCCCCCccccCCCCCcEEEEeCCCCCCCHHHHHHHhccCCC-eEEEEEeecCC-CCCcceEEE
Q psy1078 2 NPLTNVKNIKKLSEQELSSGSKTSWHDQYKDSAWIFVGGLPYDLSEGDVICIFSQYGE-IVNLNLVRDKI-TGKSKGFCF 79 (199)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~-i~~~~~~~~~~-~g~~~g~af 79 (199)
+.+.|+.|+..||+-|+........ --..++|+|||||||.+.++++|.+.|.+.++ |..|.|...+. ..++|||||
T Consensus 134 ~Ke~Aq~Aik~lnn~Eir~GK~igv-c~Svan~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaF 212 (506)
T KOG0117|consen 134 TKEEAQEAIKELNNYEIRPGKLLGV-CVSVANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAF 212 (506)
T ss_pred cHHHHHHHHHHhhCccccCCCEeEE-EEeeecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEE
Confidence 3467999999999999765432222 13578899999999999999999999999986 56776665553 367999999
Q ss_pred EEecCHHHHHHHHHhhCC--CEeCCeeEEEEeecCCCCCCCCCCChhhccceeeccCCCCCCCCCC
Q psy1078 80 ICYEDQRSTVLSVDNLNG--VKVLSRTIRVDHVNDYKPPKDNKYTDEETKKLRTIGCAPGTEFGSI 143 (199)
Q Consensus 80 V~f~~~~~a~~Ai~~lng--~~i~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (199)
|+|.+...|..|-..|-. ..+.|+.+.|+||.+...+... .....+.||+.|+...++++.|
T Consensus 213 veYe~H~~Aa~aRrKl~~g~~klwgn~~tVdWAep~~e~ded--~ms~VKvLYVRNL~~~tTeE~l 276 (506)
T KOG0117|consen 213 VEYESHRAAAMARRKLMPGKIKLWGNAITVDWAEPEEEPDED--TMSKVKVLYVRNLMESTTEETL 276 (506)
T ss_pred EEeecchhHHHHHhhccCCceeecCCcceeeccCcccCCChh--hhhheeeeeeeccchhhhHHHH
Confidence 999999999988777644 5677999999999986554443 4667789999999999998877
No 41
>KOG0144|consensus
Probab=99.60 E-value=1.3e-15 Score=126.45 Aligned_cols=111 Identities=24% Similarity=0.392 Sum_probs=90.7
Q ss_pred hhhhHHHHhhchhc--------ccCCCCCccccCCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcc
Q psy1078 4 LTNVKNIKKLSEQE--------LSSGSKTSWHDQYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSK 75 (199)
Q Consensus 4 ~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~ 75 (199)
..|.+|+..|+.+. +.+..+........+.++||||.|+..+|+.+++.+|++||.|.+|.|+++. .|.+|
T Consensus 87 k~a~~a~~Alhn~ktlpG~~~pvqvk~Ad~E~er~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~-~~~sR 165 (510)
T KOG0144|consen 87 KEADEAINALHNQKTLPGMHHPVQVKYADGERERIVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDP-DGLSR 165 (510)
T ss_pred HHHHHHHHHhhcccccCCCCcceeecccchhhhccccchhhhhhhccccccHHHHHHHHHhhCccchhhheecc-ccccc
Confidence 45778888888775 1122233333334567899999999999999999999999999999999996 79999
Q ss_pred eEEEEEecCHHHHHHHHHhhCCC-EeC--CeeEEEEeecCCCC
Q psy1078 76 GFCFICYEDQRSTVLSVDNLNGV-KVL--SRTIRVDHVNDYKP 115 (199)
Q Consensus 76 g~afV~f~~~~~a~~Ai~~lng~-~i~--g~~l~v~~a~~~~~ 115 (199)
|||||.|.+.+.|..||+.|||. .+. ..+|.|.||.+.+.
T Consensus 166 GcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFADtqkd 208 (510)
T KOG0144|consen 166 GCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFADTQKD 208 (510)
T ss_pred ceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEecccCCC
Confidence 99999999999999999999994 444 56799999987543
No 42
>KOG0130|consensus
Probab=99.59 E-value=3.5e-15 Score=106.32 Aligned_cols=85 Identities=33% Similarity=0.538 Sum_probs=80.0
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEEee
Q psy1078 31 KDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHV 110 (199)
Q Consensus 31 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~a 110 (199)
-.+..|||.++...+|+++|...|..||+|+.+.+..++.||..+|||+|+|.+...|++|+..|||..|.|..|.|+|+
T Consensus 70 VEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~ 149 (170)
T KOG0130|consen 70 VEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWC 149 (170)
T ss_pred eeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEE
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCC
Q psy1078 111 NDYKP 115 (199)
Q Consensus 111 ~~~~~ 115 (199)
.-..+
T Consensus 150 Fv~gp 154 (170)
T KOG0130|consen 150 FVKGP 154 (170)
T ss_pred EecCC
Confidence 75444
No 43
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.59 E-value=9.4e-15 Score=116.69 Aligned_cols=79 Identities=38% Similarity=0.757 Sum_probs=76.7
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEEeec
Q psy1078 33 SAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHVN 111 (199)
Q Consensus 33 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~a~ 111 (199)
.++|||+|||+.+++++|..+|..||.|..+.++.++.+|.++|||||.|.+.+.|..|+..|+|..|.|+.|.|.++.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 5999999999999999999999999999999999998899999999999999999999999999999999999999965
No 44
>smart00360 RRM RNA recognition motif.
Probab=99.58 E-value=1.2e-14 Score=92.80 Aligned_cols=71 Identities=41% Similarity=0.730 Sum_probs=67.0
Q ss_pred EeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEE
Q psy1078 38 VGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVD 108 (199)
Q Consensus 38 V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~ 108 (199)
|+|||+.+++++|+.+|..||.|..+.+..++.++.++|||||+|.+.+.|..|+..|++..++|+.|.|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 68999999999999999999999999999887778999999999999999999999999999999998873
No 45
>KOG0108|consensus
Probab=99.58 E-value=4.6e-15 Score=126.53 Aligned_cols=80 Identities=36% Similarity=0.664 Sum_probs=77.9
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEEeecCC
Q psy1078 34 AWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHVNDY 113 (199)
Q Consensus 34 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~a~~~ 113 (199)
+.|||||+|+.+++++|..+|+..|.|..++++.|+.+|+++||||++|.+.+.|..|+..|||..+.|++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999998753
No 46
>KOG0124|consensus
Probab=99.58 E-value=1.1e-15 Score=124.81 Aligned_cols=109 Identities=25% Similarity=0.496 Sum_probs=92.6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEEeecC
Q psy1078 33 SAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHVND 112 (199)
Q Consensus 33 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~a~~ 112 (199)
-|+||||.+.+...++.|+..|..||+|++|.+.+++.||+++|||||+|.-++.|+.|++.|||..++||.|+|....+
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsN 192 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSN 192 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999997554
Q ss_pred CCCCCCCCCC------hhhccceeeccCCCCCCCCCC
Q psy1078 113 YKPPKDNKYT------DEETKKLRTIGCAPGTEFGSI 143 (199)
Q Consensus 113 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~ 143 (199)
. +...... .....++|+..+.|+.++.++
T Consensus 193 m--pQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~Di 227 (544)
T KOG0124|consen 193 M--PQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDI 227 (544)
T ss_pred C--cccchHHHHHHHHHHhhheEEeeecCCCccHHHH
Confidence 2 2222221 124466888877777776665
No 47
>KOG0123|consensus
Probab=99.57 E-value=1.5e-14 Score=121.99 Aligned_cols=108 Identities=20% Similarity=0.444 Sum_probs=96.7
Q ss_pred CCchhhhHHHHhhchhcccC-CCCCccccCCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEE
Q psy1078 1 MNPLTNVKNIKKLSEQELSS-GSKTSWHDQYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCF 79 (199)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~af 79 (199)
.||.+|.+||..+|...+.. +.+..|....+ ..|||.||+++++...|..+|+.||.|.+|+|..+. .| ++|| |
T Consensus 45 ~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~--~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~-~g-~kg~-F 119 (369)
T KOG0123|consen 45 QQPADAERALDTMNFDVLKGKPIRIMWSQRDP--SLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDE-NG-SKGY-F 119 (369)
T ss_pred CCHHHHHHHHHHcCCcccCCcEEEeehhccCC--ceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcC-CC-ceee-E
Confidence 37899999999999998654 66888876443 449999999999999999999999999999999996 45 9999 9
Q ss_pred EEecCHHHHHHHHHhhCCCEeCCeeEEEEeecCC
Q psy1078 80 ICYEDQRSTVLSVDNLNGVKVLSRTIRVDHVNDY 113 (199)
Q Consensus 80 V~f~~~~~a~~Ai~~lng~~i~g~~l~v~~a~~~ 113 (199)
|+|.+.+.|.+||..|||..+.|+.|.|......
T Consensus 120 V~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~ 153 (369)
T KOG0123|consen 120 VQFESEESAKKAIEKLNGMLLNGKKIYVGLFERK 153 (369)
T ss_pred EEeCCHHHHHHHHHHhcCcccCCCeeEEeeccch
Confidence 9999999999999999999999999999987654
No 48
>KOG0114|consensus
Probab=99.56 E-value=3.6e-14 Score=96.72 Aligned_cols=80 Identities=21% Similarity=0.429 Sum_probs=72.8
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEEe
Q psy1078 30 YKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDH 109 (199)
Q Consensus 30 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~ 109 (199)
..-++.|||+|||+.+|.++...+|+.||+|..|+|-.. ...+|-|||.|.+..+|.+|+..|+|.-+.++.|.|-+
T Consensus 15 pevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~---k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vly 91 (124)
T KOG0114|consen 15 PEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNT---KETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLY 91 (124)
T ss_pred hhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCc---cCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEe
Confidence 345678999999999999999999999999999999654 44589999999999999999999999999999999999
Q ss_pred ecC
Q psy1078 110 VND 112 (199)
Q Consensus 110 a~~ 112 (199)
..+
T Consensus 92 yq~ 94 (124)
T KOG0114|consen 92 YQP 94 (124)
T ss_pred cCH
Confidence 764
No 49
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.56 E-value=6e-14 Score=90.40 Aligned_cols=74 Identities=39% Similarity=0.718 Sum_probs=68.9
Q ss_pred EEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEEe
Q psy1078 35 WIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDH 109 (199)
Q Consensus 35 ~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~ 109 (199)
+|||+|||+.+++++|+.+|..||.|..+.+..++. +.++|+|||+|.+.+.|..|+..+++..+.|+.|.|.|
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~-~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKD-TKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 489999999999999999999999999999998763 47799999999999999999999999999999999875
No 50
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.52 E-value=5.4e-14 Score=123.73 Aligned_cols=108 Identities=16% Similarity=0.334 Sum_probs=81.7
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhccC------------CCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhC
Q psy1078 29 QYKDSAWIFVGGLPYDLSEGDVICIFSQY------------GEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLN 96 (199)
Q Consensus 29 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~------------G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~ln 96 (199)
.....++|||||||+.+|+++|..+|..| +.|..+.+ +..+|||||+|.+.++|..|| .||
T Consensus 171 ~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~------~~~kg~afVeF~~~e~A~~Al-~l~ 243 (509)
T TIGR01642 171 ATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI------NKEKNFAFLEFRTVEEATFAM-ALD 243 (509)
T ss_pred CCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE------CCCCCEEEEEeCCHHHHhhhh-cCC
Confidence 34567899999999999999999999975 23444444 345799999999999999999 699
Q ss_pred CCEeCCeeEEEEeecCCCCCCC----------------------CCCChhhccceeeccCCCCCCCCCC
Q psy1078 97 GVKVLSRTIRVDHVNDYKPPKD----------------------NKYTDEETKKLRTIGCAPGTEFGSI 143 (199)
Q Consensus 97 g~~i~g~~l~v~~a~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (199)
|..|.|+.|.|.....+.+... ..........||+++++..++++.+
T Consensus 244 g~~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l 312 (509)
T TIGR01642 244 SIIYSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQI 312 (509)
T ss_pred CeEeeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHH
Confidence 9999999999987655432110 0001123468999999998887665
No 51
>KOG0144|consensus
Probab=99.51 E-value=2.2e-14 Score=119.25 Aligned_cols=107 Identities=26% Similarity=0.445 Sum_probs=89.0
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCE-eC--CeeEEE
Q psy1078 31 KDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVK-VL--SRTIRV 107 (199)
Q Consensus 31 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~-i~--g~~l~v 107 (199)
.+.-+||||-+|..++|.+|+.+|.+||.|..|.|++|+.+|.++|||||.|.+.++|.+|+..|++.. |- ...|.|
T Consensus 32 ~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqv 111 (510)
T KOG0144|consen 32 GSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQV 111 (510)
T ss_pred chhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceee
Confidence 556789999999999999999999999999999999999999999999999999999999999998854 33 467889
Q ss_pred EeecCCCCCCCCCCChhhccceeeccCCCCCCCCCC
Q psy1078 108 DHVNDYKPPKDNKYTDEETKKLRTIGCAPGTEFGSI 143 (199)
Q Consensus 108 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (199)
.+|...+... ....+||++-+.-.+++..+
T Consensus 112 k~Ad~E~er~------~~e~KLFvg~lsK~~te~ev 141 (510)
T KOG0144|consen 112 KYADGERERI------VEERKLFVGMLSKQCTENEV 141 (510)
T ss_pred cccchhhhcc------ccchhhhhhhccccccHHHH
Confidence 9987532211 22467888888777765544
No 52
>KOG0105|consensus
Probab=99.51 E-value=3.2e-14 Score=106.55 Aligned_cols=110 Identities=22% Similarity=0.396 Sum_probs=87.2
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEEee
Q psy1078 31 KDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHV 110 (199)
Q Consensus 31 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~a 110 (199)
..+++|||||||..+.+.+|..+|.+||.|..|.|... ...-+||||+|.+..+|+.||..-+|..++|..|+|.++
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r---~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR---PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccC---CCCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 45789999999999999999999999999999988543 334689999999999999999999999999999999998
Q ss_pred cCCCCCCCC-------------------CCChhhccceeeccCCCCCCCCCC
Q psy1078 111 NDYKPPKDN-------------------KYTDEETKKLRTIGCAPGTEFGSI 143 (199)
Q Consensus 111 ~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~ 143 (199)
......... .........+.+.++++..+..++
T Consensus 81 rggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDL 132 (241)
T KOG0105|consen 81 RGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDL 132 (241)
T ss_pred cCCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHH
Confidence 764321111 111223345667788887776665
No 53
>KOG0131|consensus
Probab=99.48 E-value=8e-14 Score=104.07 Aligned_cols=103 Identities=25% Similarity=0.410 Sum_probs=88.9
Q ss_pred HHhhchhcccCCCCCccccCCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEE-EEeecCCCCCcceEEEEEecCHHHH
Q psy1078 10 IKKLSEQELSSGSKTSWHDQYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNL-NLVRDKITGKSKGFCFICYEDQRST 88 (199)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~-~~~~~~~~g~~~g~afV~f~~~~~a 88 (199)
+.+|.++.+.............-+.+|||+||.+.+.+..|..+|+.||.|... .+++++.||.++|||||.|.+.+.+
T Consensus 73 ~VkLYgrpIrv~kas~~~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeas 152 (203)
T KOG0131|consen 73 MVKLYGRPIRVNKASAHQKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEAS 152 (203)
T ss_pred HHHhcCceeEEEecccccccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHH
Confidence 456666666654444444455677899999999999999999999999998764 8899998999999999999999999
Q ss_pred HHHHHhhCCCEeCCeeEEEEeecC
Q psy1078 89 VLSVDNLNGVKVLSRTIRVDHVND 112 (199)
Q Consensus 89 ~~Ai~~lng~~i~g~~l~v~~a~~ 112 (199)
.+|+..|||..+..++|.|.++..
T Consensus 153 d~ai~s~ngq~l~nr~itv~ya~k 176 (203)
T KOG0131|consen 153 DAAIGSMNGQYLCNRPITVSYAFK 176 (203)
T ss_pred HHHHHHhccchhcCCceEEEEEEe
Confidence 999999999999999999999864
No 54
>KOG4205|consensus
Probab=99.47 E-value=6e-14 Score=115.08 Aligned_cols=110 Identities=25% Similarity=0.410 Sum_probs=94.9
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEEeec
Q psy1078 32 DSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHVN 111 (199)
Q Consensus 32 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~a~ 111 (199)
+.++||||+|+|.++++.|+.+|.+||.|..|.+++++.++.++||+||+|.+.....++| ...-+.|+|+.|-+..|.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl-~~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVL-NARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheee-cccccccCCccccceecc
Confidence 7889999999999999999999999999999999999999999999999999999988888 445688999999999988
Q ss_pred CCCCCCCCCCChhhccceeeccCCCCCCCCCC
Q psy1078 112 DYKPPKDNKYTDEETKKLRTIGCAPGTEFGSI 143 (199)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (199)
+......... ...++++|++++++.+.+..+
T Consensus 84 ~r~~~~~~~~-~~~tkkiFvGG~~~~~~e~~~ 114 (311)
T KOG4205|consen 84 SREDQTKVGR-HLRTKKIFVGGLPPDTTEEDF 114 (311)
T ss_pred Cccccccccc-ccceeEEEecCcCCCCchHHH
Confidence 7543332222 225789999999999988776
No 55
>KOG0109|consensus
Probab=99.45 E-value=1.9e-13 Score=108.82 Aligned_cols=93 Identities=24% Similarity=0.473 Sum_probs=82.3
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEEeecCC
Q psy1078 34 AWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHVNDY 113 (199)
Q Consensus 34 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~a~~~ 113 (199)
..|||||||..+++..|+.+|.+||.|..|.|+ +.||||...+...|+.||..|||..|+|..|.|.-++++
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIv--------KNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIV--------KNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeee--------cccceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 369999999999999999999999999999998 569999999999999999999999999999999988764
Q ss_pred CCCCCCCCChhhccceeeccCCCCCCCCCC
Q psy1078 114 KPPKDNKYTDEETKKLRTIGCAPGTEFGSI 143 (199)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (199)
. ....+++++|+.+..+...+
T Consensus 75 s---------k~stkl~vgNis~tctn~El 95 (346)
T KOG0109|consen 75 S---------KASTKLHVGNISPTCTNQEL 95 (346)
T ss_pred C---------CCccccccCCCCccccCHHH
Confidence 2 23467899999988776555
No 56
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.44 E-value=7.9e-13 Score=82.10 Aligned_cols=56 Identities=23% Similarity=0.591 Sum_probs=51.0
Q ss_pred HHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEEee
Q psy1078 50 VICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHV 110 (199)
Q Consensus 50 L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~a 110 (199)
|..+|++||.|..+.+.... +++|||+|.+.++|..|+..|||..+.|++|+|.||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999997553 699999999999999999999999999999999986
No 57
>smart00361 RRM_1 RNA recognition motif.
Probab=99.44 E-value=7.3e-13 Score=86.15 Aligned_cols=61 Identities=25% Similarity=0.456 Sum_probs=55.2
Q ss_pred HHHHHHHhc----cCCCeEEEE-EeecCCC--CCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEE
Q psy1078 47 EGDVICIFS----QYGEIVNLN-LVRDKIT--GKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRV 107 (199)
Q Consensus 47 e~~L~~~F~----~~G~i~~~~-~~~~~~~--g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v 107 (199)
+++|+.+|. .||.|..+. |+.++.+ |.++|||||+|.+.++|.+|+..|||..+.|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 578889998 999999995 7666656 899999999999999999999999999999999976
No 58
>KOG0147|consensus
Probab=99.42 E-value=3.7e-13 Score=115.00 Aligned_cols=79 Identities=33% Similarity=0.649 Sum_probs=75.3
Q ss_pred EEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEEeecCC
Q psy1078 35 WIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHVNDY 113 (199)
Q Consensus 35 ~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~a~~~ 113 (199)
+||||||.+++++++|+.+|..||.|..|.++.+..||.++|||||+|.+.++|.+|+..|||..|-|+.|+|......
T Consensus 280 rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r 358 (549)
T KOG0147|consen 280 RLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTER 358 (549)
T ss_pred hhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeee
Confidence 3999999999999999999999999999999999889999999999999999999999999999999999999987653
No 59
>KOG0127|consensus
Probab=99.42 E-value=3.8e-13 Score=114.88 Aligned_cols=81 Identities=22% Similarity=0.361 Sum_probs=77.7
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEEeecC
Q psy1078 33 SAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHVND 112 (199)
Q Consensus 33 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~a~~ 112 (199)
+.||||++||++++.++|..+|+.+|+|..|.++.+..++..+|||||+|.-.+++++|+..+++..+.|+.|.|++|..
T Consensus 5 g~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~ 84 (678)
T KOG0127|consen 5 GATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKK 84 (678)
T ss_pred CceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceecccccccc
Confidence 48999999999999999999999999999999999998889999999999999999999999999999999999999976
Q ss_pred C
Q psy1078 113 Y 113 (199)
Q Consensus 113 ~ 113 (199)
.
T Consensus 85 R 85 (678)
T KOG0127|consen 85 R 85 (678)
T ss_pred c
Confidence 4
No 60
>KOG0146|consensus
Probab=99.41 E-value=2.8e-13 Score=106.84 Aligned_cols=85 Identities=21% Similarity=0.471 Sum_probs=80.7
Q ss_pred cCCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEE
Q psy1078 28 DQYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRV 107 (199)
Q Consensus 28 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v 107 (199)
...+++|+|||-.||....+.+|...|-.||.|.+.+|..|+.|..+++||||.|.++..|+.||..|||..|+-++|+|
T Consensus 280 reGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKV 359 (371)
T KOG0146|consen 280 REGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKV 359 (371)
T ss_pred hcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhh
Confidence 34589999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecC
Q psy1078 108 DHVND 112 (199)
Q Consensus 108 ~~a~~ 112 (199)
..-.+
T Consensus 360 QLKRP 364 (371)
T KOG0146|consen 360 QLKRP 364 (371)
T ss_pred hhcCc
Confidence 98654
No 61
>KOG4661|consensus
Probab=99.38 E-value=2.2e-12 Score=110.84 Aligned_cols=82 Identities=18% Similarity=0.382 Sum_probs=77.4
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEEee
Q psy1078 31 KDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHV 110 (199)
Q Consensus 31 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~a 110 (199)
.-+++|||.+|+..|...+|.+||++||.|+..+|+.+..+...++||||++.+...|.+||..|+.+.|.|+.|.|..+
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEka 482 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKA 482 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeec
Confidence 34678999999999999999999999999999999999878889999999999999999999999999999999999998
Q ss_pred cC
Q psy1078 111 ND 112 (199)
Q Consensus 111 ~~ 112 (199)
++
T Consensus 483 KN 484 (940)
T KOG4661|consen 483 KN 484 (940)
T ss_pred cc
Confidence 75
No 62
>KOG0124|consensus
Probab=99.36 E-value=3.2e-12 Score=104.72 Aligned_cols=110 Identities=25% Similarity=0.383 Sum_probs=94.3
Q ss_pred chhhhHHHHhhchhcccC-CCCCccccCC--------------CCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEee
Q psy1078 3 PLTNVKNIKKLSEQELSS-GSKTSWHDQY--------------KDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVR 67 (199)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--------------~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~ 67 (199)
|+.|+-|++.||+.-++. ..+.....+- ..-.+|||..+.++.+++||+..|..||+|..|.+.+
T Consensus 165 PEaAqLAlEqMNg~mlGGRNiKVgrPsNmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr 244 (544)
T KOG0124|consen 165 PEAAQLALEQMNGQMLGGRNIKVGRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLAR 244 (544)
T ss_pred cHHHHHHHHHhccccccCccccccCCCCCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeec
Confidence 788999999999998664 3333222111 1347899999999999999999999999999999999
Q ss_pred cCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEEeecC
Q psy1078 68 DKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHVND 112 (199)
Q Consensus 68 ~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~a~~ 112 (199)
.+..+.++|||||+|.+......||..||-..++|..|+|..+..
T Consensus 245 ~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~vT 289 (544)
T KOG0124|consen 245 APTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVT 289 (544)
T ss_pred cCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecccccC
Confidence 998889999999999999999999999999999999999998753
No 63
>KOG4208|consensus
Probab=99.34 E-value=5.6e-12 Score=96.03 Aligned_cols=82 Identities=21% Similarity=0.488 Sum_probs=76.1
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccC-CCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEEe
Q psy1078 31 KDSAWIFVGGLPYDLSEGDVICIFSQY-GEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDH 109 (199)
Q Consensus 31 ~~~~~l~V~nLp~~~te~~L~~~F~~~-G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~ 109 (199)
.....+||+.+|.-+.+..|..+|.+| |.|..+++.+++.||.++|||||+|.+.+.|.-|.+.||+..+.|+.|.|.+
T Consensus 47 ~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~v 126 (214)
T KOG4208|consen 47 EIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHV 126 (214)
T ss_pred CCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEE
Confidence 445679999999999999999999998 7888888889999999999999999999999999999999999999999999
Q ss_pred ecC
Q psy1078 110 VND 112 (199)
Q Consensus 110 a~~ 112 (199)
-.+
T Consensus 127 mpp 129 (214)
T KOG4208|consen 127 MPP 129 (214)
T ss_pred eCc
Confidence 754
No 64
>KOG0110|consensus
Probab=99.33 E-value=1.3e-12 Score=114.46 Aligned_cols=111 Identities=20% Similarity=0.378 Sum_probs=90.7
Q ss_pred CchhhhHHHHhhchhcccC---CCCCcc--------cc--CCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeec
Q psy1078 2 NPLTNVKNIKKLSEQELSS---GSKTSW--------HD--QYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRD 68 (199)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~---~~~~~~--------~~--~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~ 68 (199)
+|.+|..++..|++..+.. ....+. .. .......|+|.|||+..+-.+++.+|..||.|..|+|+..
T Consensus 569 ~~e~A~~a~k~lqgtvldGH~l~lk~S~~k~~~~~gK~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK 648 (725)
T KOG0110|consen 569 KPESAQAALKALQGTVLDGHKLELKISENKPASTVGKKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKK 648 (725)
T ss_pred CHHHHHHHHHHhcCceecCceEEEEeccCccccccccccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchh
Confidence 4678899999998665332 001111 01 1122468999999999999999999999999999999987
Q ss_pred CCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEEeecC
Q psy1078 69 KITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHVND 112 (199)
Q Consensus 69 ~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~a~~ 112 (199)
...+.++|||||.|-++..|.+|+.+|..+-+.||+|.+.||..
T Consensus 649 ~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~~ 692 (725)
T KOG0110|consen 649 IGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAKS 692 (725)
T ss_pred hcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhcc
Confidence 55677899999999999999999999999999999999999975
No 65
>KOG0123|consensus
Probab=99.31 E-value=7e-12 Score=105.93 Aligned_cols=92 Identities=20% Similarity=0.310 Sum_probs=81.3
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEEeecCC
Q psy1078 34 AWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHVNDY 113 (199)
Q Consensus 34 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~a~~~ 113 (199)
..|||| +++|+.+|..+|+.+|+|.+++|.++. | +.|||||.|.++.+|++||..||...|.|++|+|.|+...
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd 75 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRD 75 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccC
Confidence 359999 999999999999999999999999997 5 9999999999999999999999999999999999998642
Q ss_pred CCCCCCCCChhhccceeeccCCCCCCCCCC
Q psy1078 114 KPPKDNKYTDEETKKLRTIGCAPGTEFGSI 143 (199)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (199)
. ..+|+.++++..+...+
T Consensus 76 ~------------~~~~i~nl~~~~~~~~~ 93 (369)
T KOG0123|consen 76 P------------SLVFIKNLDESIDNKSL 93 (369)
T ss_pred C------------ceeeecCCCcccCcHHH
Confidence 2 11888888888775444
No 66
>KOG4206|consensus
Probab=99.30 E-value=8.2e-12 Score=96.42 Aligned_cols=80 Identities=16% Similarity=0.435 Sum_probs=72.7
Q ss_pred CCCcEEEEeCCCCCCCHHHHHH----HhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEE
Q psy1078 31 KDSAWIFVGGLPYDLSEGDVIC----IFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIR 106 (199)
Q Consensus 31 ~~~~~l~V~nLp~~~te~~L~~----~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~ 106 (199)
.++.||||.||+..+..++|+. +|++||.|..|... .+.+.+|-|||.|.+.+.|-.|+..|+|..+.|+.++
T Consensus 7 ~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~---kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mr 83 (221)
T KOG4206|consen 7 NPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAF---KTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMR 83 (221)
T ss_pred CCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEec---CCCCccCceEEEecChhHHHHHHHHhcCCcccCchhh
Confidence 3444999999999999998887 99999999999776 3688999999999999999999999999999999999
Q ss_pred EEeecCC
Q psy1078 107 VDHVNDY 113 (199)
Q Consensus 107 v~~a~~~ 113 (199)
|.||...
T Consensus 84 iqyA~s~ 90 (221)
T KOG4206|consen 84 IQYAKSD 90 (221)
T ss_pred eecccCc
Confidence 9999763
No 67
>KOG0153|consensus
Probab=99.28 E-value=1.9e-11 Score=99.57 Aligned_cols=82 Identities=18% Similarity=0.348 Sum_probs=71.0
Q ss_pred cccCCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHh-hCCCEeCCee
Q psy1078 26 WHDQYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDN-LNGVKVLSRT 104 (199)
Q Consensus 26 ~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-lng~~i~g~~ 104 (199)
|......-.+||||+|...+++.+|+.+|.+||+|..+.++.. +++|||+|.+..+|+.|... +|...|+|++
T Consensus 221 epPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~R 294 (377)
T KOG0153|consen 221 EPPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVINGFR 294 (377)
T ss_pred CCCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecceE
Confidence 3334455679999999999999999999999999999998766 47999999999999998764 6668889999
Q ss_pred EEEEeecCC
Q psy1078 105 IRVDHVNDY 113 (199)
Q Consensus 105 l~v~~a~~~ 113 (199)
|.|.|+.+.
T Consensus 295 l~i~Wg~~~ 303 (377)
T KOG0153|consen 295 LKIKWGRPK 303 (377)
T ss_pred EEEEeCCCc
Confidence 999999873
No 68
>KOG0132|consensus
Probab=99.28 E-value=8.9e-12 Score=110.22 Aligned_cols=80 Identities=28% Similarity=0.517 Sum_probs=73.9
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEEeec
Q psy1078 32 DSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHVN 111 (199)
Q Consensus 32 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~a~ 111 (199)
-++|||||+|+..+++.+|..+|..||.|.+|.+... +|||||.+..+.+|++|+.+|+.+.+.++.|+|.||.
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~ 493 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAV 493 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeeccC------CceeEEEEeehhHHHHHHHHHhcccccceeeEEeeec
Confidence 4789999999999999999999999999999988655 7999999999999999999999999999999999998
Q ss_pred CCCCCC
Q psy1078 112 DYKPPK 117 (199)
Q Consensus 112 ~~~~~~ 117 (199)
.+....
T Consensus 494 g~G~ks 499 (894)
T KOG0132|consen 494 GKGPKS 499 (894)
T ss_pred cCCcch
Confidence 765544
No 69
>KOG0109|consensus
Probab=99.23 E-value=1.5e-11 Score=98.03 Aligned_cols=99 Identities=17% Similarity=0.357 Sum_probs=81.5
Q ss_pred hhHHHHhhchhccc-----CCCCCccccCCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEE
Q psy1078 6 NVKNIKKLSEQELS-----SGSKTSWHDQYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFI 80 (199)
Q Consensus 6 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV 80 (199)
+.-|+..|++=.+. +....+ ....+.+|+||||.+.++..+|+..|.+||+|..|.|+ ++|+||
T Consensus 49 aedairNLhgYtLhg~nInVeaSks---Ksk~stkl~vgNis~tctn~ElRa~fe~ygpviecdiv--------kdy~fv 117 (346)
T KOG0109|consen 49 AEDAIRNLHGYTLHGVNINVEASKS---KSKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIV--------KDYAFV 117 (346)
T ss_pred cHHHHhhcccceecceEEEEEeccc---cCCCccccccCCCCccccCHHHhhhhcccCCceeeeee--------cceeEE
Confidence 34455556665533 222221 25678899999999999999999999999999999998 579999
Q ss_pred EecCHHHHHHHHHhhCCCEeCCeeEEEEeecCCCC
Q psy1078 81 CYEDQRSTVLSVDNLNGVKVLSRTIRVDHVNDYKP 115 (199)
Q Consensus 81 ~f~~~~~a~~Ai~~lng~~i~g~~l~v~~a~~~~~ 115 (199)
.|.-.++|..|+..||+..+.|++++|..+.+.-.
T Consensus 118 h~d~~eda~~air~l~~~~~~gk~m~vq~stsrlr 152 (346)
T KOG0109|consen 118 HFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLR 152 (346)
T ss_pred EEeeccchHHHHhcccccccccceeeeeeeccccc
Confidence 99999999999999999999999999999876433
No 70
>KOG0110|consensus
Probab=99.21 E-value=6.5e-11 Score=104.02 Aligned_cols=78 Identities=21% Similarity=0.369 Sum_probs=70.0
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCC---CCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEEee
Q psy1078 34 AWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKIT---GKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHV 110 (199)
Q Consensus 34 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~---g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~a 110 (199)
++|||.||++.+|.++|...|..+|.|..+.|...+.. -.+.|||||+|.+.++|+.|+..|+|+.|+|+.|.|.++
T Consensus 516 t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S 595 (725)
T KOG0110|consen 516 TKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKIS 595 (725)
T ss_pred hhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEec
Confidence 34999999999999999999999999999988765421 125699999999999999999999999999999999998
Q ss_pred c
Q psy1078 111 N 111 (199)
Q Consensus 111 ~ 111 (199)
.
T Consensus 596 ~ 596 (725)
T KOG0110|consen 596 E 596 (725)
T ss_pred c
Confidence 7
No 71
>KOG4212|consensus
Probab=99.17 E-value=1.3e-10 Score=97.24 Aligned_cols=81 Identities=22% Similarity=0.418 Sum_probs=74.5
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhc-cCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEE
Q psy1078 30 YKDSAWIFVGGLPYDLSEGDVICIFS-QYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVD 108 (199)
Q Consensus 30 ~~~~~~l~V~nLp~~~te~~L~~~F~-~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~ 108 (199)
....+.+||.|||+++...+|+.+|. +.|+|..|.++.|. +|+++|+|.|+|.+++.+++|++.||.+.+.||.|.|.
T Consensus 41 ~~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~-~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vK 119 (608)
T KOG4212|consen 41 AARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDE-SGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVK 119 (608)
T ss_pred ccccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeeccc-CCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEe
Confidence 34556799999999999999999996 68999999999995 89999999999999999999999999999999999998
Q ss_pred eec
Q psy1078 109 HVN 111 (199)
Q Consensus 109 ~a~ 111 (199)
-..
T Consensus 120 Ed~ 122 (608)
T KOG4212|consen 120 EDH 122 (608)
T ss_pred ccC
Confidence 643
No 72
>KOG0146|consensus
Probab=99.17 E-value=6.4e-11 Score=93.61 Aligned_cols=81 Identities=27% Similarity=0.483 Sum_probs=73.3
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCE-eC--CeeEEE
Q psy1078 31 KDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVK-VL--SRTIRV 107 (199)
Q Consensus 31 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~-i~--g~~l~v 107 (199)
.+.++||||.|...-.|++++.+|..||.|.+|.+++.+ .|.++|++||.|.+..+|+.||..|+|.. +- ...|.|
T Consensus 17 ~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVV 95 (371)
T KOG0146|consen 17 GDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGP-DGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVV 95 (371)
T ss_pred ccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCC-CCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEE
Confidence 477899999999999999999999999999999999986 79999999999999999999999999943 33 456899
Q ss_pred EeecC
Q psy1078 108 DHVND 112 (199)
Q Consensus 108 ~~a~~ 112 (199)
.|+..
T Consensus 96 K~ADT 100 (371)
T KOG0146|consen 96 KFADT 100 (371)
T ss_pred Eeccc
Confidence 99865
No 73
>KOG0151|consensus
Probab=99.12 E-value=2.2e-10 Score=100.78 Aligned_cols=91 Identities=13% Similarity=0.351 Sum_probs=78.9
Q ss_pred ccccCCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCC---CCCcceEEEEEecCHHHHHHHHHhhCCCEeC
Q psy1078 25 SWHDQYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKI---TGKSKGFCFICYEDQRSTVLSVDNLNGVKVL 101 (199)
Q Consensus 25 ~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~---~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~ 101 (199)
+..+..+...+|||+||++.+++..|-..|+.||+|..++|++.+. ....+.+|||.|.+..+|++|+..|+|..+.
T Consensus 166 sfDdgDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~ 245 (877)
T KOG0151|consen 166 SFDDGDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVM 245 (877)
T ss_pred cCCCCCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeee
Confidence 3334467788999999999999999999999999999999887652 2456789999999999999999999999999
Q ss_pred CeeEEEEeecCCCC
Q psy1078 102 SRTIRVDHVNDYKP 115 (199)
Q Consensus 102 g~~l~v~~a~~~~~ 115 (199)
+..+++.|+.....
T Consensus 246 ~~e~K~gWgk~V~i 259 (877)
T KOG0151|consen 246 EYEMKLGWGKAVPI 259 (877)
T ss_pred eeeeeecccccccc
Confidence 99999999965433
No 74
>KOG4212|consensus
Probab=99.08 E-value=2.3e-10 Score=95.91 Aligned_cols=76 Identities=21% Similarity=0.376 Sum_probs=70.0
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEEe
Q psy1078 30 YKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDH 109 (199)
Q Consensus 30 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~ 109 (199)
.+..|+|||.|||+++|...|+.-|..||.|..+.|+ +.|+++| .|.|.++++|++|+..|||..++|+.|.|.|
T Consensus 533 arKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadim---e~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y 607 (608)
T KOG4212|consen 533 ARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIM---ENGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTY 607 (608)
T ss_pred cccccEEEEecCCccccHHHHHHHHHhccceehhhhh---ccCCccc--eEEecCHHHHHHHHHHhccCcccCceeeeee
Confidence 4678999999999999999999999999999999885 4588887 8999999999999999999999999999987
Q ss_pred e
Q psy1078 110 V 110 (199)
Q Consensus 110 a 110 (199)
.
T Consensus 608 ~ 608 (608)
T KOG4212|consen 608 F 608 (608)
T ss_pred C
Confidence 3
No 75
>KOG0533|consensus
Probab=99.06 E-value=7.4e-10 Score=87.90 Aligned_cols=82 Identities=22% Similarity=0.462 Sum_probs=76.0
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEEee
Q psy1078 31 KDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHV 110 (199)
Q Consensus 31 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~a 110 (199)
....+|+|.|||+.+++.+|+++|..||.+..+.|.+++ .|.+.|.|-|.|....+|.+|+..+||..++|+.+++...
T Consensus 81 ~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i 159 (243)
T KOG0533|consen 81 TRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEII 159 (243)
T ss_pred CCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEe
Confidence 445789999999999999999999999999999998886 8999999999999999999999999999999999999987
Q ss_pred cCC
Q psy1078 111 NDY 113 (199)
Q Consensus 111 ~~~ 113 (199)
.+.
T Consensus 160 ~~~ 162 (243)
T KOG0533|consen 160 SSP 162 (243)
T ss_pred cCc
Confidence 653
No 76
>KOG1457|consensus
Probab=99.05 E-value=1.6e-09 Score=83.75 Aligned_cols=86 Identities=19% Similarity=0.321 Sum_probs=71.3
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCC-CCcceEEEEEecCHHHHHHHHHhhCCCEeC---CeeEEE
Q psy1078 32 DSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKIT-GKSKGFCFICYEDQRSTVLSVDNLNGVKVL---SRTIRV 107 (199)
Q Consensus 32 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~-g~~~g~afV~f~~~~~a~~Ai~~lng~~i~---g~~l~v 107 (199)
.-+||||.+||-++...+|..+|..|-....+.|...... ...+-+|||+|.+...|.+|+..|||+.|+ +..|+|
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhi 112 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHI 112 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEe
Confidence 3689999999999999999999999976676666443222 234589999999999999999999999998 889999
Q ss_pred EeecCCCCCC
Q psy1078 108 DHVNDYKPPK 117 (199)
Q Consensus 108 ~~a~~~~~~~ 117 (199)
++|+...+.+
T Consensus 113 ElAKSNtK~k 122 (284)
T KOG1457|consen 113 ELAKSNTKRK 122 (284)
T ss_pred eehhcCcccc
Confidence 9998755433
No 77
>KOG4205|consensus
Probab=98.99 E-value=9.8e-10 Score=90.38 Aligned_cols=82 Identities=26% Similarity=0.436 Sum_probs=76.0
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEEeec
Q psy1078 32 DSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHVN 111 (199)
Q Consensus 32 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~a~ 111 (199)
....||||+||..+++.+|+.+|.+||.|..+.++.+..+..++||+||.|.+.+.+.+++ ...-+.|.|+.+.|..|.
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~-~~~f~~~~gk~vevkrA~ 174 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVT-LQKFHDFNGKKVEVKRAI 174 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceec-ccceeeecCceeeEeecc
Confidence 3558999999999999999999999999999999999999999999999999999999988 567799999999999998
Q ss_pred CCC
Q psy1078 112 DYK 114 (199)
Q Consensus 112 ~~~ 114 (199)
++.
T Consensus 175 pk~ 177 (311)
T KOG4205|consen 175 PKE 177 (311)
T ss_pred chh
Confidence 754
No 78
>KOG0226|consensus
Probab=98.96 E-value=8.1e-10 Score=86.77 Aligned_cols=94 Identities=30% Similarity=0.501 Sum_probs=83.7
Q ss_pred cCCCCCccccCC-----CCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHH
Q psy1078 19 SSGSKTSWHDQY-----KDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVD 93 (199)
Q Consensus 19 ~~~~~~~~~~~~-----~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~ 93 (199)
.....++|.++. .+..+||+|.|.-.++++.|-..|.+|-.-...+++++..||+++||+||.|.+..++..|+.
T Consensus 171 R~a~gtswedPsl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmr 250 (290)
T KOG0226|consen 171 RLAAGTSWEDPSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMR 250 (290)
T ss_pred eeccccccCCcccccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHH
Confidence 345677887764 467899999999999999999999999888888999999999999999999999999999999
Q ss_pred hhCCCEeCCeeEEEEeecC
Q psy1078 94 NLNGVKVLSRTIRVDHVND 112 (199)
Q Consensus 94 ~lng~~i~g~~l~v~~a~~ 112 (199)
.|||..++.+.|++.-...
T Consensus 251 em~gkyVgsrpiklRkS~w 269 (290)
T KOG0226|consen 251 EMNGKYVGSRPIKLRKSEW 269 (290)
T ss_pred hhcccccccchhHhhhhhH
Confidence 9999999999988876543
No 79
>KOG0116|consensus
Probab=98.94 E-value=2.9e-09 Score=90.81 Aligned_cols=81 Identities=22% Similarity=0.377 Sum_probs=68.2
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEEee
Q psy1078 31 KDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHV 110 (199)
Q Consensus 31 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~a 110 (199)
....+|||+|||++++..+|+++|..||.|....|......++..+||||+|.+...++.||.+ +-..|++++|.|.--
T Consensus 286 ~~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek 364 (419)
T KOG0116|consen 286 ADGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEK 364 (419)
T ss_pred ecccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEec
Confidence 4456699999999999999999999999999887755432355459999999999999999955 588999999999975
Q ss_pred cC
Q psy1078 111 ND 112 (199)
Q Consensus 111 ~~ 112 (199)
.+
T Consensus 365 ~~ 366 (419)
T KOG0116|consen 365 RP 366 (419)
T ss_pred cc
Confidence 44
No 80
>KOG4209|consensus
Probab=98.93 E-value=2.1e-09 Score=85.28 Aligned_cols=85 Identities=19% Similarity=0.356 Sum_probs=78.5
Q ss_pred cCCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEE
Q psy1078 28 DQYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRV 107 (199)
Q Consensus 28 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v 107 (199)
....+...+||||+.+.+|.+.+...|..||.|..+.|+.+..+|.++||+||.|.+.+.++.|+. |||..|.|+.|.|
T Consensus 96 ~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~v 174 (231)
T KOG4209|consen 96 QKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEV 174 (231)
T ss_pred hhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCccccccccee
Confidence 345678899999999999999999999999999999999998888999999999999999999996 9999999999999
Q ss_pred EeecCC
Q psy1078 108 DHVNDY 113 (199)
Q Consensus 108 ~~a~~~ 113 (199)
.+..-.
T Consensus 175 t~~r~~ 180 (231)
T KOG4209|consen 175 TLKRTN 180 (231)
T ss_pred eeeeee
Confidence 987654
No 81
>KOG0106|consensus
Probab=98.91 E-value=1.1e-09 Score=85.23 Aligned_cols=71 Identities=31% Similarity=0.628 Sum_probs=66.7
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEEeecC
Q psy1078 34 AWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHVND 112 (199)
Q Consensus 34 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~a~~ 112 (199)
..||||+||+.+.+.+|..+|..||.|..+.+. .||+||.|.+..+|..|+..||+..|.|-.+.|.|+..
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~ 72 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARG 72 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeecccc
Confidence 469999999999999999999999999998775 58999999999999999999999999999999999985
No 82
>KOG1548|consensus
Probab=98.83 E-value=1.6e-08 Score=82.62 Aligned_cols=81 Identities=28% Similarity=0.517 Sum_probs=72.4
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeE--------EEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCC
Q psy1078 31 KDSAWIFVGGLPYDLSEGDVICIFSQYGEIV--------NLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLS 102 (199)
Q Consensus 31 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~--------~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g 102 (199)
.-+..|||.|||.++|-+++..+|++||-|. .|+|-++. .|+.+|=|+|.|...++++.|+..|++..|.|
T Consensus 132 ~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg 210 (382)
T KOG1548|consen 132 KVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKILDEDELRG 210 (382)
T ss_pred ccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHhCcccccC
Confidence 3456699999999999999999999999875 36677774 59999999999999999999999999999999
Q ss_pred eeEEEEeecC
Q psy1078 103 RTIRVDHVND 112 (199)
Q Consensus 103 ~~l~v~~a~~ 112 (199)
+.|+|..|+-
T Consensus 211 ~~~rVerAkf 220 (382)
T KOG1548|consen 211 KKLRVERAKF 220 (382)
T ss_pred cEEEEehhhh
Confidence 9999999863
No 83
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.83 E-value=4.4e-08 Score=67.28 Aligned_cols=78 Identities=14% Similarity=0.250 Sum_probs=69.1
Q ss_pred cEEEEeCCCCCCCHHHHHHHhcc--CCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeC----CeeEEE
Q psy1078 34 AWIFVGGLPYDLSEGDVICIFSQ--YGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVL----SRTIRV 107 (199)
Q Consensus 34 ~~l~V~nLp~~~te~~L~~~F~~--~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~----g~~l~v 107 (199)
+||.|+|||-..|..+|..++.. .|....+.++.|..++-+.|||||.|.+...|......++|..+. .+...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 58999999999999999998864 477888999999888999999999999999999999999998886 556777
Q ss_pred Eeec
Q psy1078 108 DHVN 111 (199)
Q Consensus 108 ~~a~ 111 (199)
.||.
T Consensus 82 ~yAr 85 (97)
T PF04059_consen 82 SYAR 85 (97)
T ss_pred ehhH
Confidence 7875
No 84
>KOG4660|consensus
Probab=98.77 E-value=4.4e-09 Score=90.53 Aligned_cols=71 Identities=24% Similarity=0.443 Sum_probs=64.9
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEE
Q psy1078 31 KDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIR 106 (199)
Q Consensus 31 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~ 106 (199)
-..++|+|-|||..++.++|+.+|+.||+|..|+.- ...+|.+||+|.+..+|++|++.||+..|.|++|.
T Consensus 73 ~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t-----~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 73 MNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRET-----PNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred CccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcc-----cccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 456899999999999999999999999999997664 34489999999999999999999999999999887
No 85
>KOG4454|consensus
Probab=98.74 E-value=3.4e-09 Score=81.71 Aligned_cols=79 Identities=15% Similarity=0.191 Sum_probs=71.3
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEEee
Q psy1078 31 KDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHV 110 (199)
Q Consensus 31 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~a 110 (199)
...++|||+||...++++.|.++|-+.|+|..|.|+... .+..+ ||||.|.+.....-|+..|||..+.++.|.|.+-
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r 84 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLR 84 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCc-cCCCc-eeeeecccccchhhhhhhcccchhccchhhcccc
Confidence 456789999999999999999999999999999998775 56666 9999999999999999999999999999888874
Q ss_pred c
Q psy1078 111 N 111 (199)
Q Consensus 111 ~ 111 (199)
.
T Consensus 85 ~ 85 (267)
T KOG4454|consen 85 C 85 (267)
T ss_pred c
Confidence 3
No 86
>KOG1190|consensus
Probab=98.63 E-value=2.4e-07 Score=77.37 Aligned_cols=76 Identities=20% Similarity=0.421 Sum_probs=69.7
Q ss_pred CcEEEEeCCCCC-CCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEEeec
Q psy1078 33 SAWIFVGGLPYD-LSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHVN 111 (199)
Q Consensus 33 ~~~l~V~nLp~~-~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~a~ 111 (199)
++.|.|.||... +|.+-|..+|+.||.|..|.|+.++ +--|+|+|.+...|+-|+..|+|+.|.|+.|+|.+++
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nk-----kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK-----KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecC-----CcceeeeecchhHHHHHHHHhhcceecCceEEEeecc
Confidence 688999999665 8999999999999999999999886 4679999999999999999999999999999999987
Q ss_pred CC
Q psy1078 112 DY 113 (199)
Q Consensus 112 ~~ 113 (199)
..
T Consensus 372 H~ 373 (492)
T KOG1190|consen 372 HT 373 (492)
T ss_pred Cc
Confidence 53
No 87
>KOG0120|consensus
Probab=98.63 E-value=2.4e-08 Score=86.39 Aligned_cols=83 Identities=34% Similarity=0.532 Sum_probs=77.9
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEEeec
Q psy1078 32 DSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHVN 111 (199)
Q Consensus 32 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~a~ 111 (199)
..+.+||++||...++.++.+++..||++....++.+..+|.++||||.+|.+......|+..|||+.+++..|.|..|-
T Consensus 288 ~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~ 367 (500)
T KOG0120|consen 288 SPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAI 367 (500)
T ss_pred ccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhh
Confidence 34679999999999999999999999999999999999899999999999999999999999999999999999999986
Q ss_pred CCC
Q psy1078 112 DYK 114 (199)
Q Consensus 112 ~~~ 114 (199)
...
T Consensus 368 ~g~ 370 (500)
T KOG0120|consen 368 VGA 370 (500)
T ss_pred ccc
Confidence 543
No 88
>KOG4211|consensus
Probab=98.49 E-value=8.2e-07 Score=75.79 Aligned_cols=110 Identities=17% Similarity=0.245 Sum_probs=80.1
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEEe
Q psy1078 30 YKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDH 109 (199)
Q Consensus 30 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~ 109 (199)
......|-+.+|||++|+++|..+|+.++ |..+.+++. +|+..|=|||+|.+.++++.|+ +.+...+..|-|.|--
T Consensus 7 ~~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~--~Gr~sGeA~Ve~~seedv~~Al-kkdR~~mg~RYIEVf~ 82 (510)
T KOG4211|consen 7 GSTAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRR--NGRPSGEAYVEFTSEEDVEKAL-KKDRESMGHRYIEVFT 82 (510)
T ss_pred CCcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEecc--CCCcCcceEEEeechHHHHHHH-HhhHHHhCCceEEEEc
Confidence 34556688899999999999999999995 777666654 7999999999999999999999 5688888889888876
Q ss_pred ecCCCCCC----CCCCChhhccceeeccCCCCCCCCCC
Q psy1078 110 VNDYKPPK----DNKYTDEETKKLRTIGCAPGTEFGSI 143 (199)
Q Consensus 110 a~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (199)
+....... ...........+...+|+-.+++.+|
T Consensus 83 ~~~~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI 120 (510)
T KOG4211|consen 83 AGGAEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDI 120 (510)
T ss_pred cCCccccccccCCCCCCCCCCceEEecCCCccCcHHHH
Confidence 64321100 00011123344566677777776665
No 89
>KOG1995|consensus
Probab=98.32 E-value=6.7e-07 Score=73.67 Aligned_cols=83 Identities=30% Similarity=0.416 Sum_probs=75.4
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhccCCCeE--------EEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeC
Q psy1078 30 YKDSAWIFVGGLPYDLSEGDVICIFSQYGEIV--------NLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVL 101 (199)
Q Consensus 30 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~--------~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~ 101 (199)
.....+|||-+||..++..+|..+|.++|.|. .|.|-++..|+.++|=|.|.|.+...|+.||..+++..+.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 56778999999999999999999999999875 3556677789999999999999999999999999999999
Q ss_pred CeeEEEEeecC
Q psy1078 102 SRTIRVDHVND 112 (199)
Q Consensus 102 g~~l~v~~a~~ 112 (199)
|..|+|.+|..
T Consensus 143 gn~ikvs~a~~ 153 (351)
T KOG1995|consen 143 GNTIKVSLAER 153 (351)
T ss_pred CCCchhhhhhh
Confidence 99999999864
No 90
>KOG0147|consensus
Probab=98.28 E-value=3.3e-07 Score=79.04 Aligned_cols=114 Identities=18% Similarity=0.252 Sum_probs=90.4
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEE
Q psy1078 29 QYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVD 108 (199)
Q Consensus 29 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~ 108 (199)
+..+.++||+--|+..++..+|..+|+.+|.|..|.++.++.++.++|.|||+|.+......|| .|.|..+.|.+|.|.
T Consensus 175 eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrllg~pv~vq 253 (549)
T KOG0147|consen 175 EERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLLGVPVIVQ 253 (549)
T ss_pred hHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCcccCceeEec
Confidence 3457789999999999999999999999999999999999999999999999999999999999 999999999999998
Q ss_pred eecCCCC-------CCCCCCChhhccceeeccCCCCCCCCCC
Q psy1078 109 HVNDYKP-------PKDNKYTDEETKKLRTIGCAPGTEFGSI 143 (199)
Q Consensus 109 ~a~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (199)
....-+. .............++++++....++..+
T Consensus 254 ~sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~l 295 (549)
T KOG0147|consen 254 LSEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDML 295 (549)
T ss_pred ccHHHHHHHHhccccccccccccchhhhhhcccccCchHHHH
Confidence 7532111 1110111111122788888887776665
No 91
>KOG4210|consensus
Probab=98.23 E-value=1e-06 Score=72.25 Aligned_cols=81 Identities=28% Similarity=0.484 Sum_probs=73.8
Q ss_pred CCcEEE-EeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEEee
Q psy1078 32 DSAWIF-VGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHV 110 (199)
Q Consensus 32 ~~~~l~-V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~a 110 (199)
...++| |++|+..++.++|..+|..+|.|..++++.++.+|...|||||.|.....+..++.. ....+.++.+.|.+.
T Consensus 183 ~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 261 (285)
T KOG4210|consen 183 PSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEED 261 (285)
T ss_pred ccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccC
Confidence 345566 999999999999999999999999999999999999999999999999999999976 789999999999997
Q ss_pred cCC
Q psy1078 111 NDY 113 (199)
Q Consensus 111 ~~~ 113 (199)
.+.
T Consensus 262 ~~~ 264 (285)
T KOG4210|consen 262 EPR 264 (285)
T ss_pred CCC
Confidence 653
No 92
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.19 E-value=6.6e-06 Score=54.43 Aligned_cols=68 Identities=16% Similarity=0.345 Sum_probs=47.0
Q ss_pred cEEEEeCCCCCCCHHHH----HHHhccCC-CeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEE
Q psy1078 34 AWIFVGGLPYDLSEGDV----ICIFSQYG-EIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVD 108 (199)
Q Consensus 34 ~~l~V~nLp~~~te~~L----~~~F~~~G-~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~ 108 (199)
..|||.|||.......| +.++..+| .|..| ..+-|+|.|.+.+.|.+|.+.|+|-.+.|++|.|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v----------~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV----------SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE----------eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 35999999999887655 45565675 56554 13789999999999999999999999999999999
Q ss_pred eec
Q psy1078 109 HVN 111 (199)
Q Consensus 109 ~a~ 111 (199)
|..
T Consensus 73 ~~~ 75 (90)
T PF11608_consen 73 FSP 75 (90)
T ss_dssp SS-
T ss_pred EcC
Confidence 964
No 93
>KOG3152|consensus
Probab=98.18 E-value=1.1e-06 Score=69.31 Aligned_cols=73 Identities=16% Similarity=0.257 Sum_probs=61.8
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCC--------CCcce----EEEEEecCHHHHHHHHHhhCCCE
Q psy1078 32 DSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKIT--------GKSKG----FCFICYEDQRSTVLSVDNLNGVK 99 (199)
Q Consensus 32 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~--------g~~~g----~afV~f~~~~~a~~Ai~~lng~~ 99 (199)
....||+++||+.+...-|+.+|+.||.|-.|.|-....+ |...+ -|+|+|.+...|..+...||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 5678999999999999999999999999999988644323 22222 27899999999999999999999
Q ss_pred eCCee
Q psy1078 100 VLSRT 104 (199)
Q Consensus 100 i~g~~ 104 (199)
|+|+.
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99875
No 94
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.17 E-value=4.3e-06 Score=58.51 Aligned_cols=60 Identities=18% Similarity=0.338 Sum_probs=39.4
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCC
Q psy1078 33 SAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGV 98 (199)
Q Consensus 33 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~ 98 (199)
++.|+|.+++..++-++|+..|..||.|..|.+... ..-|||.|.+.+.|+.|+..+...
T Consensus 1 G~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G------~~~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 1 GCILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG------DTEGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp --EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHT
T ss_pred CeEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC------CCEEEEEECCcchHHHHHHHHHhc
Confidence 357899999999999999999999999999988654 357999999999999999876543
No 95
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=98.17 E-value=5.4e-06 Score=68.00 Aligned_cols=79 Identities=15% Similarity=0.372 Sum_probs=62.1
Q ss_pred cEEEEeCCCCCCCHHH----H--HHHhccCCCeEEEEEeecCCC-CCcce-E-EEEEecCHHHHHHHHHhhCCCEeCCee
Q psy1078 34 AWIFVGGLPYDLSEGD----V--ICIFSQYGEIVNLNLVRDKIT-GKSKG-F-CFICYEDQRSTVLSVDNLNGVKVLSRT 104 (199)
Q Consensus 34 ~~l~V~nLp~~~te~~----L--~~~F~~~G~i~~~~~~~~~~~-g~~~g-~-afV~f~~~~~a~~Ai~~lng~~i~g~~ 104 (199)
.-+||-+||+.+..+. | .++|++||.|..|.|-+.-.+ ....+ + .||+|.+.++|.+||...+|..++||.
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~ 194 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRV 194 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCce
Confidence 4589999999987765 3 478999999999877544211 11122 2 499999999999999999999999999
Q ss_pred EEEEeecC
Q psy1078 105 IRVDHVND 112 (199)
Q Consensus 105 l~v~~a~~ 112 (199)
|+..|...
T Consensus 195 lkatYGTT 202 (480)
T COG5175 195 LKATYGTT 202 (480)
T ss_pred EeeecCch
Confidence 99998643
No 96
>KOG0106|consensus
Probab=98.15 E-value=1.5e-06 Score=67.77 Aligned_cols=71 Identities=23% Similarity=0.409 Sum_probs=62.9
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEEe
Q psy1078 31 KDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDH 109 (199)
Q Consensus 31 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~ 109 (199)
...+.|+|.+++..+...+|..+|..+|.+....+ ..+++||+|....+|..|+..|+|..+.|+.|.+..
T Consensus 97 ~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--------~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~ 167 (216)
T KOG0106|consen 97 RTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--------RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVEK 167 (216)
T ss_pred cccceeeeccchhhhhHHHHhhhhcccCCCchhhh--------hccccceeehhhhhhhhcchhccchhhcCceeeecc
Confidence 45678999999999999999999999999954433 368999999999999999999999999999999944
No 97
>KOG4211|consensus
Probab=98.15 E-value=9.1e-06 Score=69.55 Aligned_cols=78 Identities=22% Similarity=0.394 Sum_probs=63.2
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCeEE-EEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEEee
Q psy1078 32 DSAWIFVGGLPYDLSEGDVICIFSQYGEIVN-LNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHV 110 (199)
Q Consensus 32 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~-~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~a 110 (199)
....|-+++||+.||+++|.++|+..-.|.. +.++.++ .+++.|-|||+|.+.+.|+.|+. -|...|+.|-|.|-.+
T Consensus 102 ~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~-rgR~tGEAfVqF~sqe~ae~Al~-rhre~iGhRYIEvF~S 179 (510)
T KOG4211|consen 102 NDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQ-RGRPTGEAFVQFESQESAEIALG-RHRENIGHRYIEVFRS 179 (510)
T ss_pred CCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccC-CCCcccceEEEecCHHHHHHHHH-HHHHhhccceEEeehh
Confidence 4568899999999999999999997644443 5566664 57899999999999999999994 4667788888888765
Q ss_pred c
Q psy1078 111 N 111 (199)
Q Consensus 111 ~ 111 (199)
.
T Consensus 180 s 180 (510)
T KOG4211|consen 180 S 180 (510)
T ss_pred H
Confidence 3
No 98
>KOG1457|consensus
Probab=98.13 E-value=3.2e-06 Score=65.71 Aligned_cols=64 Identities=16% Similarity=0.263 Sum_probs=53.6
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeC
Q psy1078 34 AWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVL 101 (199)
Q Consensus 34 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~ 101 (199)
.+|||.||...+++++|+.+|+.|.....++|.. ......||+.|.+.+.|..|+..|.|..|.
T Consensus 211 stlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~----~~g~~vaf~~~~~~~~at~am~~lqg~~~s 274 (284)
T KOG1457|consen 211 STLFIANLGPNCTEDELKQLLSRYPGFHILKIRA----RGGMPVAFADFEEIEQATDAMNHLQGNLLS 274 (284)
T ss_pred hhHhhhccCCCCCHHHHHHHHHhCCCceEEEEec----CCCcceEeecHHHHHHHHHHHHHhhcceec
Confidence 4899999999999999999999997666555532 223578999999999999999999987764
No 99
>KOG4206|consensus
Probab=98.13 E-value=1.3e-05 Score=62.26 Aligned_cols=78 Identities=15% Similarity=0.362 Sum_probs=69.8
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeC-CeeEEE
Q psy1078 29 QYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVL-SRTIRV 107 (199)
Q Consensus 29 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~-g~~l~v 107 (199)
..+.+..||+.|||..++.+.|..+|.+|+....++++... .+.|||+|.+...|..|...+.|..|- ...+.|
T Consensus 142 ~~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i 216 (221)
T KOG4206|consen 142 MAPPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQI 216 (221)
T ss_pred CCCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceeccCceEEe
Confidence 35778899999999999999999999999999999988665 689999999999999999999998887 888888
Q ss_pred Eeec
Q psy1078 108 DHVN 111 (199)
Q Consensus 108 ~~a~ 111 (199)
.++.
T Consensus 217 ~~a~ 220 (221)
T KOG4206|consen 217 TFAK 220 (221)
T ss_pred cccC
Confidence 8764
No 100
>KOG4849|consensus
Probab=98.11 E-value=2.3e-06 Score=70.42 Aligned_cols=77 Identities=14% Similarity=0.346 Sum_probs=66.7
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCC--CeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEEee
Q psy1078 34 AWIFVGGLPYDLSEGDVICIFSQYG--EIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHV 110 (199)
Q Consensus 34 ~~l~V~nLp~~~te~~L~~~F~~~G--~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~a 110 (199)
-.+|||||-|.+|++||.+.+...| .+..+++..++.+|+++|||+|...+..+..+.+..|-...|.|..-.|-.+
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~~ 159 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLSY 159 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeecc
Confidence 4699999999999999999888776 4667777888889999999999999999999999999999999887655543
No 101
>KOG2314|consensus
Probab=97.93 E-value=4.3e-05 Score=66.55 Aligned_cols=78 Identities=28% Similarity=0.411 Sum_probs=64.1
Q ss_pred CcEEEEeCCCCCCCH------HHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeC-CeeE
Q psy1078 33 SAWIFVGGLPYDLSE------GDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVL-SRTI 105 (199)
Q Consensus 33 ~~~l~V~nLp~~~te------~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~-g~~l 105 (199)
...|+|.|+|---.. .-|..+|+++|+|..+.++.+.. |..+||.|++|.+..+|+.|++.|||..|+ .+++
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~-ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf 136 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEE-GGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTF 136 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCcc-CCeeeEEEEEecChhhHHHHHHhcccceecccceE
Confidence 467889999865433 24557899999999999998865 559999999999999999999999999997 6677
Q ss_pred EEEeec
Q psy1078 106 RVDHVN 111 (199)
Q Consensus 106 ~v~~a~ 111 (199)
.|..-.
T Consensus 137 ~v~~f~ 142 (698)
T KOG2314|consen 137 FVRLFK 142 (698)
T ss_pred Eeehhh
Confidence 776544
No 102
>KOG0129|consensus
Probab=97.91 E-value=6.2e-05 Score=64.93 Aligned_cols=64 Identities=30% Similarity=0.628 Sum_probs=49.1
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCC---CCcce---EEEEEecCHHHHHHHHHhh
Q psy1078 31 KDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKIT---GKSKG---FCFICYEDQRSTVLSVDNL 95 (199)
Q Consensus 31 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~---g~~~g---~afV~f~~~~~a~~Ai~~l 95 (199)
.-++.||||+||+.++++.|...|..||.+ .|.|+..... -.++| |+|+.|.+......-|...
T Consensus 257 ~~S~KVFvGGlp~dise~~i~~~F~~FGs~-~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC 326 (520)
T KOG0129|consen 257 RYSRKVFVGGLPWDITEAQINASFGQFGSV-KVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSAC 326 (520)
T ss_pred ccccceeecCCCccccHHHHHhhcccccce-EeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHH
Confidence 456889999999999999999999999986 4566632211 12456 9999999998887765543
No 103
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.85 E-value=4e-05 Score=46.77 Aligned_cols=52 Identities=31% Similarity=0.678 Sum_probs=42.8
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHH
Q psy1078 34 AWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSV 92 (199)
Q Consensus 34 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai 92 (199)
+.|-|.|.++...+. +..+|..||+|..+.+.. ...+.||.|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~~------~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVPE------STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcCC------CCcEEEEEECCHHHHHhhC
Confidence 468899999887755 455888999999988862 2578999999999999985
No 104
>KOG1548|consensus
Probab=97.84 E-value=0.00021 Score=58.90 Aligned_cols=78 Identities=6% Similarity=0.186 Sum_probs=62.1
Q ss_pred CCCCcEEEEeCCCC----CCC-------HHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCC
Q psy1078 30 YKDSAWIFVGGLPY----DLS-------EGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGV 98 (199)
Q Consensus 30 ~~~~~~l~V~nLp~----~~t-------e~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~ 98 (199)
....++|.+.||-. ..+ .++|..-..+||.|..|.|.- ..+.|.+-|.|.+.+.|..||+.|+|.
T Consensus 262 ~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d----~hPdGvvtV~f~n~eeA~~ciq~m~GR 337 (382)
T KOG1548|consen 262 ARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYD----RHPDGVVTVSFRNNEEADQCIQTMDGR 337 (382)
T ss_pred ccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEec----cCCCceeEEEeCChHHHHHHHHHhcCe
Confidence 35678999999821 223 245556678999999997752 345899999999999999999999999
Q ss_pred EeCCeeEEEEeec
Q psy1078 99 KVLSRTIRVDHVN 111 (199)
Q Consensus 99 ~i~g~~l~v~~a~ 111 (199)
.++||+|....-.
T Consensus 338 ~fdgRql~A~i~D 350 (382)
T KOG1548|consen 338 WFDGRQLTASIWD 350 (382)
T ss_pred eecceEEEEEEeC
Confidence 9999999888654
No 105
>KOG1190|consensus
Probab=97.84 E-value=7.1e-05 Score=62.94 Aligned_cols=80 Identities=18% Similarity=0.228 Sum_probs=67.0
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCe-eEEE
Q psy1078 29 QYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSR-TIRV 107 (199)
Q Consensus 29 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~-~l~v 107 (199)
-.+++.+|...|+|.++++++|..+|..-|-....... .++.+.++++++.+.+.|-.|+..|+.+.+++. -|+|
T Consensus 410 i~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkf----f~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRv 485 (492)
T KOG1190|consen 410 IFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKF----FQKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRV 485 (492)
T ss_pred cCCchhheeeccCCcccchhHHHHhhhcCCceEEeeee----cCCCcceeecccCChhHhhhhccccccccCCCCceEEE
Confidence 34667899999999999999999999988876554332 355678999999999999999999999999865 8999
Q ss_pred EeecC
Q psy1078 108 DHVND 112 (199)
Q Consensus 108 ~~a~~ 112 (199)
.|++.
T Consensus 486 SFSks 490 (492)
T KOG1190|consen 486 SFSKS 490 (492)
T ss_pred Eeecc
Confidence 99764
No 106
>KOG0112|consensus
Probab=97.78 E-value=3.8e-05 Score=70.00 Aligned_cols=79 Identities=18% Similarity=0.289 Sum_probs=69.4
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCC--eeEE
Q psy1078 29 QYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLS--RTIR 106 (199)
Q Consensus 29 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g--~~l~ 106 (199)
....+..+||++|+.++....|...|..||+|..|.+- ....|+||+|.+...|+.|+..|-|..|+| ++|.
T Consensus 451 kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~------hgq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~r 524 (975)
T KOG0112|consen 451 KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYR------HGQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLR 524 (975)
T ss_pred ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecc------cCCcceeeecccCccchhhHHHHhcCcCCCCCcccc
Confidence 34567889999999999999999999999999988663 336899999999999999999999999984 6799
Q ss_pred EEeecCC
Q psy1078 107 VDHVNDY 113 (199)
Q Consensus 107 v~~a~~~ 113 (199)
|.++.+.
T Consensus 525 vdla~~~ 531 (975)
T KOG0112|consen 525 VDLASPP 531 (975)
T ss_pred cccccCC
Confidence 9998763
No 107
>KOG0120|consensus
Probab=97.72 E-value=0.00012 Score=63.74 Aligned_cols=64 Identities=19% Similarity=0.342 Sum_probs=53.9
Q ss_pred HHHHHhccCCCeEEEEEeecCCC---CCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEEeecC
Q psy1078 49 DVICIFSQYGEIVNLNLVRDKIT---GKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHVND 112 (199)
Q Consensus 49 ~L~~~F~~~G~i~~~~~~~~~~~---g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~a~~ 112 (199)
+++.-++.||.|..|.+++.-.. .-..|-.||+|.+.++|++|+..|+|..+.||.|...|...
T Consensus 425 dvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyde 491 (500)
T KOG0120|consen 425 DVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDE 491 (500)
T ss_pred HHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCH
Confidence 45556789999999999887222 34578899999999999999999999999999999998753
No 108
>KOG0128|consensus
Probab=97.71 E-value=3.3e-05 Score=70.03 Aligned_cols=79 Identities=19% Similarity=0.283 Sum_probs=71.0
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEEeecC
Q psy1078 33 SAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHVND 112 (199)
Q Consensus 33 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~a~~ 112 (199)
...|||.|+|+..|.+.|+.+|..+|.+..+.++..+ .|+++|.|||.|.+..++..++..+++..+.-+.+.|..+++
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r-~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVR-AGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhhh-ccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 4569999999999999999999999999999888775 799999999999999999999988888888877777777655
No 109
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.71 E-value=0.0003 Score=51.61 Aligned_cols=78 Identities=22% Similarity=0.328 Sum_probs=52.9
Q ss_pred CCCCCcEEEEeCCC-----CCCCHH----HHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCE
Q psy1078 29 QYKDSAWIFVGGLP-----YDLSEG----DVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVK 99 (199)
Q Consensus 29 ~~~~~~~l~V~nLp-----~~~te~----~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~ 99 (199)
..|+..||.|.=+. .....+ .|...|..||.+.-++++. +.-+|+|.+-..|.+|+ .|+|..
T Consensus 23 ~GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~--------~~mwVTF~dg~sALaal-s~dg~~ 93 (146)
T PF08952_consen 23 QGPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVG--------DTMWVTFRDGQSALAAL-SLDGIQ 93 (146)
T ss_dssp ---TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEET--------TCEEEEESSCHHHHHHH-HGCCSE
T ss_pred cCCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeC--------CeEEEEECccHHHHHHH-ccCCcE
Confidence 34666677776555 122233 6777889999988877763 45899999999999999 899999
Q ss_pred eCCeeEEEEeecCCCC
Q psy1078 100 VLSRTIRVDHVNDYKP 115 (199)
Q Consensus 100 i~g~~l~v~~a~~~~~ 115 (199)
|+|+.|+|..-.+.+.
T Consensus 94 v~g~~l~i~LKtpdW~ 109 (146)
T PF08952_consen 94 VNGRTLKIRLKTPDWL 109 (146)
T ss_dssp ETTEEEEEEE------
T ss_pred ECCEEEEEEeCCccHH
Confidence 9999999998766543
No 110
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.69 E-value=0.00026 Score=48.92 Aligned_cols=78 Identities=21% Similarity=0.369 Sum_probs=51.9
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEE-EeecC------CCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCee
Q psy1078 32 DSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLN-LVRDK------ITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRT 104 (199)
Q Consensus 32 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~-~~~~~------~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~ 104 (199)
..+.|.|=++|+.. ...+...|++||.|.... +.++. .......+-.|+|.++.+|.+|| .-||..|.|..
T Consensus 5 ~~~wVtVFGfp~~~-~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL-~~NG~i~~g~~ 82 (100)
T PF05172_consen 5 SETWVTVFGFPPSA-SNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRAL-QKNGTIFSGSL 82 (100)
T ss_dssp GCCEEEEE---GGG-HHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHH-TTTTEEETTCE
T ss_pred CCeEEEEEccCHHH-HHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHH-HhCCeEEcCcE
Confidence 34568888999984 466788999999998774 11110 00123568899999999999999 77999999864
Q ss_pred -EEEEeec
Q psy1078 105 -IRVDHVN 111 (199)
Q Consensus 105 -l~v~~a~ 111 (199)
+-|.++.
T Consensus 83 mvGV~~~~ 90 (100)
T PF05172_consen 83 MVGVKPCD 90 (100)
T ss_dssp EEEEEE-H
T ss_pred EEEEEEcH
Confidence 4466663
No 111
>KOG4307|consensus
Probab=97.68 E-value=0.00019 Score=64.13 Aligned_cols=78 Identities=21% Similarity=0.400 Sum_probs=67.1
Q ss_pred CCc-EEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEEe
Q psy1078 32 DSA-WIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDH 109 (199)
Q Consensus 32 ~~~-~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~ 109 (199)
.++ .|-|.|+|+.++-+||..+|.-|-.+-.-.+++-...|...|-|.|.|.+.+.|.+|...|++..|..+.|++..
T Consensus 865 pGp~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 865 PGPRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred CCCeEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 345 677899999999999999999997765443444446799999999999999999999999999999999998875
No 112
>KOG1456|consensus
Probab=97.62 E-value=0.00038 Score=58.10 Aligned_cols=78 Identities=17% Similarity=0.299 Sum_probs=69.8
Q ss_pred CCCCcEEEEeCCCCC-CCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEE
Q psy1078 30 YKDSAWIFVGGLPYD-LSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVD 108 (199)
Q Consensus 30 ~~~~~~l~V~nLp~~-~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~ 108 (199)
..+++.+.|-+|... +.-+.|..+|..||.|..|++++.. .|-|.|++.+..+.++|+..||+..+-|.+|.|.
T Consensus 284 ~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-----~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~ 358 (494)
T KOG1456|consen 284 GAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-----PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVC 358 (494)
T ss_pred CCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-----cceeEEEcCcHHHHHHHHHHhccCccccceEEEe
Confidence 356789999999876 5668999999999999999999876 6899999999999999999999999999999998
Q ss_pred eecC
Q psy1078 109 HVND 112 (199)
Q Consensus 109 ~a~~ 112 (199)
.+..
T Consensus 359 ~SkQ 362 (494)
T KOG1456|consen 359 VSKQ 362 (494)
T ss_pred eccc
Confidence 8754
No 113
>KOG0129|consensus
Probab=97.59 E-value=0.00022 Score=61.63 Aligned_cols=65 Identities=20% Similarity=0.400 Sum_probs=60.1
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhc-cCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHh
Q psy1078 30 YKDSAWIFVGGLPYDLSEGDVICIFS-QYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDN 94 (199)
Q Consensus 30 ~~~~~~l~V~nLp~~~te~~L~~~F~-~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~ 94 (199)
....+|||||+||.-++.++|-.+|. -||.|..+.|-.|++-..++|-|=|+|.+..+-.+||..
T Consensus 367 lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 367 IDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred cCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 45678999999999999999999998 899999999999988899999999999999999999864
No 114
>KOG4676|consensus
Probab=97.50 E-value=0.00014 Score=60.87 Aligned_cols=76 Identities=17% Similarity=0.287 Sum_probs=61.6
Q ss_pred EEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCC---CCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEEeec
Q psy1078 35 WIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKIT---GKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHVN 111 (199)
Q Consensus 35 ~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~---g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~a~ 111 (199)
.|.|.||.+++|.+++..+|+-.|.|..+.|...... ......|||-|.+...+..|. .|.++.+-++.|.|-.+.
T Consensus 9 vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQ-hLtntvfvdraliv~p~~ 87 (479)
T KOG4676|consen 9 VIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQ-HLTNTVFVDRALIVRPYG 87 (479)
T ss_pred eeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHh-hhccceeeeeeEEEEecC
Confidence 7999999999999999999999999999988653311 235678999999999999887 666667777777666543
No 115
>KOG0112|consensus
Probab=97.45 E-value=3.3e-05 Score=70.42 Aligned_cols=100 Identities=16% Similarity=0.281 Sum_probs=81.5
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEEe
Q psy1078 30 YKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDH 109 (199)
Q Consensus 30 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~ 109 (199)
...+.+||+|||+..+++.+|+..|..+|.|..|.|-..+ -+...-||||.|.+...+..|+..+.+..|....+++.+
T Consensus 369 ~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~-~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~gl 447 (975)
T KOG0112|consen 369 FRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPH-IKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGL 447 (975)
T ss_pred hhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCC-CCcccchhhhhhhccccCcccchhhcCCccccCcccccc
Confidence 4568899999999999999999999999999999886553 355678999999999999999999999888876777777
Q ss_pred ecCCCCCCCCCCChhhccceeeccCCCCCC
Q psy1078 110 VNDYKPPKDNKYTDEETKKLRTIGCAPGTE 139 (199)
Q Consensus 110 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (199)
..+ ....+..++++++++.++
T Consensus 448 G~~---------kst~ttr~~sgglg~w~p 468 (975)
T KOG0112|consen 448 GQP---------KSTPTTRLQSGGLGPWSP 468 (975)
T ss_pred ccc---------ccccceeeccCCCCCCCh
Confidence 543 133456777788777765
No 116
>KOG2416|consensus
Probab=97.37 E-value=0.00063 Score=59.82 Aligned_cols=77 Identities=16% Similarity=0.321 Sum_probs=63.7
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhcc-CCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEe---CCeeE
Q psy1078 30 YKDSAWIFVGGLPYDLSEGDVICIFSQ-YGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKV---LSRTI 105 (199)
Q Consensus 30 ~~~~~~l~V~nLp~~~te~~L~~~F~~-~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i---~g~~l 105 (199)
...+..|||.||-.-+|.-+|+.++.. .|.|... |+ .+-+..|||.|.+.+.|.+.+.+|||..+ +++.|
T Consensus 441 ~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~-Wm-----DkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L 514 (718)
T KOG2416|consen 441 KEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF-WM-----DKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHL 514 (718)
T ss_pred CCccceEeeecccccchHHHHHHHHhhccCchHHH-HH-----HHhhcceeEecccHHHHHHHHHHHhccccCCCCCcee
Confidence 356789999999999999999999994 5556555 44 23478899999999999999999999877 47889
Q ss_pred EEEeecC
Q psy1078 106 RVDHVND 112 (199)
Q Consensus 106 ~v~~a~~ 112 (199)
.+.|+..
T Consensus 515 ~adf~~~ 521 (718)
T KOG2416|consen 515 IADFVRA 521 (718)
T ss_pred Eeeecch
Confidence 9999754
No 117
>KOG1456|consensus
Probab=97.32 E-value=0.0016 Score=54.42 Aligned_cols=80 Identities=10% Similarity=0.223 Sum_probs=64.6
Q ss_pred CCCcEEEEeCCC--CCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeC--CeeEE
Q psy1078 31 KDSAWIFVGGLP--YDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVL--SRTIR 106 (199)
Q Consensus 31 ~~~~~l~V~nLp--~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~--g~~l~ 106 (199)
..+..|.+.=|+ +.+|-+-|..+....|+|..|.|.+.. --.|.|+|.+.+.|++|...|||..|. =..|+
T Consensus 118 ~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkkn-----gVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLK 192 (494)
T KOG1456|consen 118 TPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKKN-----GVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLK 192 (494)
T ss_pred CCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEecc-----ceeeEEeechhHHHHHHHhhcccccccccceeEE
Confidence 445556655554 447899999999999999999888652 345999999999999999999998886 35799
Q ss_pred EEeecCCCC
Q psy1078 107 VDHVNDYKP 115 (199)
Q Consensus 107 v~~a~~~~~ 115 (199)
|+||++.+.
T Consensus 193 IeyAkP~rl 201 (494)
T KOG1456|consen 193 IEYAKPTRL 201 (494)
T ss_pred EEecCccee
Confidence 999988543
No 118
>KOG1855|consensus
Probab=97.26 E-value=0.00029 Score=59.66 Aligned_cols=69 Identities=23% Similarity=0.295 Sum_probs=57.5
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeec---CCC--CC--------cceEEEEEecCHHHHHHHHHhhCC
Q psy1078 31 KDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRD---KIT--GK--------SKGFCFICYEDQRSTVLSVDNLNG 97 (199)
Q Consensus 31 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~---~~~--g~--------~~g~afV~f~~~~~a~~Ai~~lng 97 (199)
-.+++|.+.|||.+-.-+-|..+|+.+|.|..|+|... +.+ |. .+-+|||+|...+.|.+|.+.||.
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 57899999999999888999999999999999999766 322 22 245799999999999999988765
Q ss_pred CE
Q psy1078 98 VK 99 (199)
Q Consensus 98 ~~ 99 (199)
..
T Consensus 309 e~ 310 (484)
T KOG1855|consen 309 EQ 310 (484)
T ss_pred hh
Confidence 43
No 119
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=97.26 E-value=0.0022 Score=42.55 Aligned_cols=57 Identities=16% Similarity=0.416 Sum_probs=43.9
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhC
Q psy1078 31 KDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLN 96 (199)
Q Consensus 31 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~ln 96 (199)
......||+ +|..+...||..+|+.||.| .|.++.+ .-|||.....+.|..|+..+.
T Consensus 7 ~RdHVFhlt-FPkeWK~~DI~qlFspfG~I-~VsWi~d-------TSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 7 SRDHVFHLT-FPKEWKTSDIYQLFSPFGQI-YVSWIND-------TSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp SGCCEEEEE---TT--HHHHHHHCCCCCCE-EEEEECT-------TEEEEEECCCHHHHHHHHHHT
T ss_pred CcceEEEEe-CchHhhhhhHHHHhccCCcE-EEEEEcC-------CcEEEEeecHHHHHHHHHHhc
Confidence 445667777 99999999999999999987 5667655 459999999999999987775
No 120
>KOG1365|consensus
Probab=97.17 E-value=0.00077 Score=56.48 Aligned_cols=79 Identities=19% Similarity=0.335 Sum_probs=66.0
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCC-eEE--EEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEE
Q psy1078 31 KDSAWIFVGGLPYDLSEGDVICIFSQYGE-IVN--LNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRV 107 (199)
Q Consensus 31 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~-i~~--~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v 107 (199)
+....|-+++||+..+-++|..+|..|-. |.. |.++.+. .|++.|-|||+|.+.+.|..|....+.+...+|.|.|
T Consensus 278 ~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~-qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEv 356 (508)
T KOG1365|consen 278 RSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNG-QGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEV 356 (508)
T ss_pred CCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcC-CCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEE
Confidence 33557889999999999999999998864 333 6777764 6999999999999999999999888887777888887
Q ss_pred Eee
Q psy1078 108 DHV 110 (199)
Q Consensus 108 ~~a 110 (199)
-.+
T Consensus 357 fp~ 359 (508)
T KOG1365|consen 357 FPC 359 (508)
T ss_pred eec
Confidence 665
No 121
>KOG0105|consensus
Probab=97.16 E-value=0.0015 Score=49.66 Aligned_cols=70 Identities=21% Similarity=0.257 Sum_probs=60.0
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeC--CeeEEEEe
Q psy1078 33 SAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVL--SRTIRVDH 109 (199)
Q Consensus 33 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~--g~~l~v~~ 109 (199)
..+|.|.+||++.+.++|+.+....|.|....+.++ |++.|.|...++.+.|+..|+...+. |-...+..
T Consensus 115 e~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-------g~GvV~~~r~eDMkYAvr~ld~~~~~seGe~~yirv 186 (241)
T KOG0105|consen 115 EYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-------GVGVVEYLRKEDMKYAVRKLDDQKFRSEGETAYIRV 186 (241)
T ss_pred ceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-------cceeeeeeehhhHHHHHHhhccccccCcCcEeeEEe
Confidence 457999999999999999999999999999988877 68999999999999999999887664 44444443
No 122
>KOG2193|consensus
Probab=97.16 E-value=0.00035 Score=59.16 Aligned_cols=72 Identities=21% Similarity=0.363 Sum_probs=57.8
Q ss_pred EEEEeCCCCCCCHHHHHHHhccCCC-eEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCC-CEeCCeeEEEEeecC
Q psy1078 35 WIFVGGLPYDLSEGDVICIFSQYGE-IVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNG-VKVLSRTIRVDHVND 112 (199)
Q Consensus 35 ~l~V~nLp~~~te~~L~~~F~~~G~-i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng-~~i~g~~l~v~~a~~ 112 (199)
.||+|||.+.++..+|..+|...-- ...-.++ ..||+||.+.+...|.+|++.++| ..+.|.++.|.+..+
T Consensus 3 klyignL~p~~~psdl~svfg~ak~~~~g~fl~-------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 3 KLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV-------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred cccccccCCCCChHHHHHHhccccCCCCcceee-------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 5899999999999999999975411 1111122 259999999999999999999999 578899999998876
Q ss_pred C
Q psy1078 113 Y 113 (199)
Q Consensus 113 ~ 113 (199)
+
T Consensus 76 k 76 (584)
T KOG2193|consen 76 K 76 (584)
T ss_pred H
Confidence 4
No 123
>KOG2202|consensus
Probab=97.01 E-value=0.00029 Score=55.97 Aligned_cols=62 Identities=21% Similarity=0.356 Sum_probs=51.0
Q ss_pred HHHHHhc-cCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEEeec
Q psy1078 49 DVICIFS-QYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHVN 111 (199)
Q Consensus 49 ~L~~~F~-~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~a~ 111 (199)
+|...|. +||+|..+.|-.+. .-...|-+||.|...++|++|+..||+..+.|++|...+..
T Consensus 84 d~f~E~~~kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 84 DVFTELEDKYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 4444444 89999998665442 34568999999999999999999999999999999999864
No 124
>KOG0128|consensus
Probab=96.98 E-value=2.1e-05 Score=71.28 Aligned_cols=71 Identities=23% Similarity=0.231 Sum_probs=60.4
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeC
Q psy1078 31 KDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVL 101 (199)
Q Consensus 31 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~ 101 (199)
.+.+++||+||+..+.+.+|...|..+|.|..+++......++.+|+||+.|.....+.+||....+..++
T Consensus 665 R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g 735 (881)
T KOG0128|consen 665 RDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG 735 (881)
T ss_pred HHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh
Confidence 34578999999999999999999999999988877755567999999999999999999999665554444
No 125
>KOG1365|consensus
Probab=96.91 E-value=0.0033 Score=52.81 Aligned_cols=69 Identities=19% Similarity=0.359 Sum_probs=52.8
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccC----CCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCee
Q psy1078 34 AWIFVGGLPYDLSEGDVICIFSQY----GEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRT 104 (199)
Q Consensus 34 ~~l~V~nLp~~~te~~L~~~F~~~----G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~ 104 (199)
-.|-+++||+++++.++..+|... |....|.++..+ +|+..|=|||.|...++|+.|+.. |...|+.|.
T Consensus 162 vivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rp-dgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRY 234 (508)
T KOG1365|consen 162 VIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRP-DGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRY 234 (508)
T ss_pred eEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECC-CCCcccceEEEecCHHHHHHHHHH-HHHHHhHHH
Confidence 345567999999999999999743 234466666654 799999999999999999999965 444454443
No 126
>KOG1996|consensus
Probab=96.84 E-value=0.0044 Score=50.31 Aligned_cols=64 Identities=19% Similarity=0.204 Sum_probs=51.4
Q ss_pred HHHHHHhccCCCeEEEEEeecCCCCCc-ceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEEeec
Q psy1078 48 GDVICIFSQYGEIVNLNLVRDKITGKS-KGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHVN 111 (199)
Q Consensus 48 ~~L~~~F~~~G~i~~~~~~~~~~~g~~-~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~a~ 111 (199)
+++..-..+||.|..|.|.-.+..... .---||+|...+.|.+|+-.|||..|+||.+...|.+
T Consensus 301 de~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 301 DETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 345566789999999988777532222 2347999999999999999999999999999988864
No 127
>KOG4307|consensus
Probab=96.84 E-value=0.0012 Score=59.25 Aligned_cols=82 Identities=18% Similarity=0.197 Sum_probs=69.8
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeEE-EEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEEe
Q psy1078 31 KDSAWIFVGGLPYDLSEGDVICIFSQYGEIVN-LNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDH 109 (199)
Q Consensus 31 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~-~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~ 109 (199)
..+..|||-.||..++..++..+|...-.|.+ |.|.+.+ +++.++.|||.|...+++..|+..-+.+.++.+.|+|+-
T Consensus 432 ~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P-~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~s 510 (944)
T KOG4307|consen 432 GAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLP-TDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDS 510 (944)
T ss_pred CccceEEeccCCccccccchhhhhhhhhhhhheeEeccCC-cccccchhhheeccccccchhhhcccccccCceEEEeec
Confidence 45678999999999999999999987777766 6776665 789999999999999999988877777888889999998
Q ss_pred ecCC
Q psy1078 110 VNDY 113 (199)
Q Consensus 110 a~~~ 113 (199)
...+
T Consensus 511 i~~~ 514 (944)
T KOG4307|consen 511 IADY 514 (944)
T ss_pred hhhH
Confidence 7654
No 128
>KOG0115|consensus
Probab=96.77 E-value=0.0027 Score=50.56 Aligned_cols=80 Identities=15% Similarity=0.144 Sum_probs=63.6
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCC----CEeCCeeE
Q psy1078 30 YKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNG----VKVLSRTI 105 (199)
Q Consensus 30 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng----~~i~g~~l 105 (199)
+.....|||.||+.-++.+.|...|+.||+|....+..+- .++..+-++|.|...-.|.+|+..++- ..+.++..
T Consensus 28 fa~~a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~-r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~ 106 (275)
T KOG0115|consen 28 FAMHAELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDD-RGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPV 106 (275)
T ss_pred eeccceEEEEecchhhhhHHHHHhhhhcCccchheeeecc-cccccccchhhhhcchhHHHHHHHhccCccccCCCCCcc
Confidence 3334789999999999999999999999999877666663 588999999999999999999877633 33446665
Q ss_pred EEEee
Q psy1078 106 RVDHV 110 (199)
Q Consensus 106 ~v~~a 110 (199)
-|...
T Consensus 107 ~VeP~ 111 (275)
T KOG0115|consen 107 GVEPM 111 (275)
T ss_pred CCChh
Confidence 55543
No 129
>KOG2135|consensus
Probab=96.72 E-value=0.001 Score=57.13 Aligned_cols=75 Identities=19% Similarity=0.259 Sum_probs=62.2
Q ss_pred CCCcEEEEeCCCCCCCH-HHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEEe
Q psy1078 31 KDSAWIFVGGLPYDLSE-GDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDH 109 (199)
Q Consensus 31 ~~~~~l~V~nLp~~~te-~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~ 109 (199)
.+.+.|-+.-.|+.... .+|...|.+||.|..|.+-.. .-.|.|+|.+...|-.|. ..++..|+++.|+|.|
T Consensus 370 ~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~-~s~~avlnnr~iKl~w 442 (526)
T KOG2135|consen 370 VDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAY-ASHGAVLNNRFIKLFW 442 (526)
T ss_pred cccchhhhhccCCCCchHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccchh-ccccceecCceeEEEE
Confidence 45566777777777644 899999999999999988543 456999999999998787 6799999999999999
Q ss_pred ecC
Q psy1078 110 VND 112 (199)
Q Consensus 110 a~~ 112 (199)
-++
T Consensus 443 hnp 445 (526)
T KOG2135|consen 443 HNP 445 (526)
T ss_pred ecC
Confidence 875
No 130
>KOG2068|consensus
Probab=96.61 E-value=0.00073 Score=55.68 Aligned_cols=79 Identities=24% Similarity=0.450 Sum_probs=61.8
Q ss_pred cEEEEeCCCCCCCHHHHH---HHhccCCCeEEEEEeecCC--CC-CcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEE
Q psy1078 34 AWIFVGGLPYDLSEGDVI---CIFSQYGEIVNLNLVRDKI--TG-KSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRV 107 (199)
Q Consensus 34 ~~l~V~nLp~~~te~~L~---~~F~~~G~i~~~~~~~~~~--~g-~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v 107 (199)
.-+||-+|+.....+.+. .+|.+||.|..|.+..++. .+ ....-++|+|...++|..||...+|..++|+.|+.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 457888999887665443 5799999999998877652 11 12233899999999999999999999999999887
Q ss_pred EeecC
Q psy1078 108 DHVND 112 (199)
Q Consensus 108 ~~a~~ 112 (199)
.+...
T Consensus 158 ~~gtt 162 (327)
T KOG2068|consen 158 SLGTT 162 (327)
T ss_pred hhCCC
Confidence 77653
No 131
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.41 E-value=0.022 Score=35.76 Aligned_cols=54 Identities=20% Similarity=0.461 Sum_probs=43.8
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccC---CCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhh
Q psy1078 34 AWIFVGGLPYDLSEGDVICIFSQY---GEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95 (199)
Q Consensus 34 ~~l~V~nLp~~~te~~L~~~F~~~---G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l 95 (199)
..|+|.|+. .++.++|..+|..| .....|.|+-+. -|-|.|.+...|.+||..|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 469999985 57778999999988 235688888773 4889999999999999764
No 132
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=96.39 E-value=0.008 Score=45.93 Aligned_cols=82 Identities=12% Similarity=0.173 Sum_probs=51.1
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhcc-CCCe---EEEE--EeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeC---
Q psy1078 31 KDSAWIFVGGLPYDLSEGDVICIFSQ-YGEI---VNLN--LVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVL--- 101 (199)
Q Consensus 31 ~~~~~l~V~nLp~~~te~~L~~~F~~-~G~i---~~~~--~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~--- 101 (199)
.....|.|++||+..|++++...+.. ++.- ..+. +...........-|||.|.+.+++...+..++|+.+.
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 34568999999999999999987776 6655 2332 1111111123456999999999999999999997764
Q ss_pred C--eeEEEEeecC
Q psy1078 102 S--RTIRVDHVND 112 (199)
Q Consensus 102 g--~~l~v~~a~~ 112 (199)
| ....|.+|.-
T Consensus 85 g~~~~~~VE~Apy 97 (176)
T PF03467_consen 85 GNEYPAVVEFAPY 97 (176)
T ss_dssp S-EEEEEEEE-SS
T ss_pred CCCcceeEEEcch
Confidence 2 2456677654
No 133
>KOG2253|consensus
Probab=96.23 E-value=0.0024 Score=56.94 Aligned_cols=75 Identities=13% Similarity=0.153 Sum_probs=64.3
Q ss_pred cccCCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeE
Q psy1078 26 WHDQYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTI 105 (199)
Q Consensus 26 ~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l 105 (199)
...+.++.-+|||||+...+..+-+..++..+|-|..+... -|||+.|.....+..|+..++-..++|..+
T Consensus 33 ~~~~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~---------~fgf~~f~~~~~~~ra~r~~t~~~~~~~kl 103 (668)
T KOG2253|consen 33 VFQPLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRD---------KFGFCEFLKHIGDLRASRLLTELNIDDQKL 103 (668)
T ss_pred cccCCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhh---------hhcccchhhHHHHHHHHHHhcccCCCcchh
Confidence 33445677899999999999999999999999998877543 299999999999999999999999988887
Q ss_pred EEEe
Q psy1078 106 RVDH 109 (199)
Q Consensus 106 ~v~~ 109 (199)
.+..
T Consensus 104 ~~~~ 107 (668)
T KOG2253|consen 104 IENV 107 (668)
T ss_pred hccc
Confidence 6665
No 134
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=96.10 E-value=0.095 Score=36.87 Aligned_cols=68 Identities=19% Similarity=0.269 Sum_probs=49.5
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccC-CCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCC
Q psy1078 33 SAWIFVGGLPYDLSEGDVICIFSQY-GEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLS 102 (199)
Q Consensus 33 ~~~l~V~nLp~~~te~~L~~~F~~~-G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g 102 (199)
...+.+...|+.++.++|..+...+ ..|..++|+++. ...+-.+.+.|.+...|..-...+||..++.
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~--~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG--TPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC--CCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 3344444555556666776665555 356788888873 3467789999999999999999999988863
No 135
>KOG4285|consensus
Probab=95.93 E-value=0.032 Score=45.60 Aligned_cols=72 Identities=24% Similarity=0.375 Sum_probs=54.8
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCee-EEEEeec
Q psy1078 33 SAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRT-IRVDHVN 111 (199)
Q Consensus 33 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~-l~v~~a~ 111 (199)
...|-|-++|+.-. ..|..+|.+||.|...... ..-.+-+|.|.+..+|++|| ..||..|+|.. |-|..+.
T Consensus 197 D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~------~ngNwMhirYssr~~A~KAL-skng~ii~g~vmiGVkpCt 268 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTP------SNGNWMHIRYSSRTHAQKAL-SKNGTIIDGDVMIGVKPCT 268 (350)
T ss_pred cceEEEeccCccch-hHHHHHHHhhCeeeeeecC------CCCceEEEEecchhHHHHhh-hhcCeeeccceEEeeeecC
Confidence 45677778887755 4567889999999887554 22478999999999999999 66999999865 4455544
Q ss_pred C
Q psy1078 112 D 112 (199)
Q Consensus 112 ~ 112 (199)
+
T Consensus 269 D 269 (350)
T KOG4285|consen 269 D 269 (350)
T ss_pred C
Confidence 3
No 136
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=95.79 E-value=0.052 Score=39.75 Aligned_cols=73 Identities=16% Similarity=0.259 Sum_probs=56.4
Q ss_pred CCCcEEEEeCCCCCCCH-HHHHH---HhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEE
Q psy1078 31 KDSAWIFVGGLPYDLSE-GDVIC---IFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIR 106 (199)
Q Consensus 31 ~~~~~l~V~nLp~~~te-~~L~~---~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~ 106 (199)
++-.+|.|+=|..++.. +||+. .++.||+|.+|.+. | +.-|.|.|.+..+|-.|+.++.. ...|..+.
T Consensus 84 pPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c-----G--rqsavVvF~d~~SAC~Av~Af~s-~~pgtm~q 155 (166)
T PF15023_consen 84 PPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC-----G--RQSAVVVFKDITSACKAVSAFQS-RAPGTMFQ 155 (166)
T ss_pred CCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec-----C--CceEEEEehhhHHHHHHHHhhcC-CCCCceEE
Confidence 44568889888777643 55554 46789999998664 2 45699999999999999988875 67788888
Q ss_pred EEeec
Q psy1078 107 VDHVN 111 (199)
Q Consensus 107 v~~a~ 111 (199)
+.|-.
T Consensus 156 CsWqq 160 (166)
T PF15023_consen 156 CSWQQ 160 (166)
T ss_pred eeccc
Confidence 88854
No 137
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=95.78 E-value=0.035 Score=42.67 Aligned_cols=60 Identities=17% Similarity=0.204 Sum_probs=45.9
Q ss_pred HHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhC--CCEeCCeeEEEEeecC
Q psy1078 47 EGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLN--GVKVLSRTIRVDHVND 112 (199)
Q Consensus 47 e~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~ln--g~~i~g~~l~v~~a~~ 112 (199)
...|+.+|..|+.+..+.++.. -+-..|.|.+.+.|.+|...|+ +..+.|..|+|-|+..
T Consensus 9 ~~~l~~l~~~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~ 70 (184)
T PF04847_consen 9 LAELEELFSTYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQP 70 (184)
T ss_dssp HHHHHHHHHTT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----
T ss_pred HHHHHHHHHhcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccc
Confidence 4789999999999988877644 3568899999999999999999 9999999999999854
No 138
>KOG4210|consensus
Probab=95.15 E-value=0.014 Score=48.06 Aligned_cols=81 Identities=16% Similarity=0.081 Sum_probs=65.4
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEEeec
Q psy1078 32 DSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHVN 111 (199)
Q Consensus 32 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~a~ 111 (199)
..+++|||++.+.+.+.++..+|..+|.+..+.+........++||+++.|...+.+..|+...-...+.++.+......
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 46889999999999999888999999988877776655578899999999999999999995443356667666655544
Q ss_pred C
Q psy1078 112 D 112 (199)
Q Consensus 112 ~ 112 (199)
.
T Consensus 167 ~ 167 (285)
T KOG4210|consen 167 R 167 (285)
T ss_pred c
Confidence 3
No 139
>KOG4660|consensus
Probab=94.38 E-value=0.07 Score=46.94 Aligned_cols=78 Identities=14% Similarity=0.143 Sum_probs=55.3
Q ss_pred EEEEeCCCCCCCHHHHHHHh-ccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeC----CeeEEEEe
Q psy1078 35 WIFVGGLPYDLSEGDVICIF-SQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVL----SRTIRVDH 109 (199)
Q Consensus 35 ~l~V~nLp~~~te~~L~~~F-~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~----g~~l~v~~ 109 (199)
++-|.|+|-..|-..|.+.- ...|.-..+.++.|-.+-...|||||.|.+.+++..+.+++||+.+. .+...+.|
T Consensus 390 t~~iknipNK~T~~ml~~~d~~~~gtYDFlYLPiDF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia~itY 469 (549)
T KOG4660|consen 390 TLMIKNIPNKYTSKMLLAADEKNKGTYDFLYLPIDFKNKCNVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKIASITY 469 (549)
T ss_pred hhHhhccCchhhHHhhhhhhccccCccceEEeccccccccccceeEEeecCHHHHHHHHHHHcCCchhhhcceeeeeeeh
Confidence 44555555555544444332 23566677788887666678899999999999999999999997664 45567777
Q ss_pred ecC
Q psy1078 110 VND 112 (199)
Q Consensus 110 a~~ 112 (199)
|.-
T Consensus 470 ArI 472 (549)
T KOG4660|consen 470 ARI 472 (549)
T ss_pred hhh
Confidence 753
No 140
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=94.31 E-value=0.3 Score=31.61 Aligned_cols=67 Identities=19% Similarity=0.419 Sum_probs=38.7
Q ss_pred EEEEe-CCCCCCCHHHHHHHhccCCC-----eEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEE
Q psy1078 35 WIFVG-GLPYDLSEGDVICIFSQYGE-----IVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVD 108 (199)
Q Consensus 35 ~l~V~-nLp~~~te~~L~~~F~~~G~-----i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~ 108 (199)
+|||. +--..++..+|..++...+. |-.+.|. ..|+||+-... .|..++..|++..+.|+.|.|.
T Consensus 2 rl~in~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~--------~~~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve 72 (74)
T PF03880_consen 2 RLFINVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDIF--------DNFSFVEVPEE-VAEKVLEALNGKKIKGKKVRVE 72 (74)
T ss_dssp EEEES-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE---------SS-EEEEE-TT--HHHHHHHHTT--SSS----EE
T ss_pred EEEEEcccccCCCHHHHHHHHHhccCCCHHhEEEEEEe--------eeEEEEEECHH-HHHHHHHHhcCCCCCCeeEEEE
Confidence 45553 33445778888888876654 4456664 46899987765 7788999999999999999998
Q ss_pred ee
Q psy1078 109 HV 110 (199)
Q Consensus 109 ~a 110 (199)
.|
T Consensus 73 ~A 74 (74)
T PF03880_consen 73 RA 74 (74)
T ss_dssp E-
T ss_pred EC
Confidence 64
No 141
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=94.01 E-value=0.41 Score=30.42 Aligned_cols=55 Identities=13% Similarity=0.276 Sum_probs=42.3
Q ss_pred CCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEE
Q psy1078 44 DLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRV 107 (199)
Q Consensus 44 ~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v 107 (199)
.++-++|+..+..|+- .. |..++ .| =||.|.+..+|+++....+|..+.+.+|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~-~~--I~~d~-----tG-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-DR--IRDDR-----TG-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCc-ce--EEecC-----CE-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 3567899999999963 22 33343 33 489999999999999999999988877654
No 142
>KOG2318|consensus
Probab=93.17 E-value=0.54 Score=41.89 Aligned_cols=80 Identities=10% Similarity=0.360 Sum_probs=61.0
Q ss_pred CCCcEEEEeCCCCC-CCHHHHHHHhccC----CCeEEEEEeecC----------CCCC----------------------
Q psy1078 31 KDSAWIFVGGLPYD-LSEGDVICIFSQY----GEIVNLNLVRDK----------ITGK---------------------- 73 (199)
Q Consensus 31 ~~~~~l~V~nLp~~-~te~~L~~~F~~~----G~i~~~~~~~~~----------~~g~---------------------- 73 (199)
..+.+|-|.||.|. +...+|..+|+.| |.|.+|.|.... ..|.
T Consensus 172 ~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~ 251 (650)
T KOG2318|consen 172 EETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEE 251 (650)
T ss_pred cccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhh
Confidence 45678999999999 6779999999876 578888764321 1121
Q ss_pred ---------------cceEEEEEecCHHHHHHHHHhhCCCEeC--CeeEEEEee
Q psy1078 74 ---------------SKGFCFICYEDQRSTVLSVDNLNGVKVL--SRTIRVDHV 110 (199)
Q Consensus 74 ---------------~~g~afV~f~~~~~a~~Ai~~lng~~i~--g~~l~v~~a 110 (199)
..-||.|+|.+...|.+.+..++|+.+. +..|-+.|.
T Consensus 252 ~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFI 305 (650)
T KOG2318|consen 252 DVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFI 305 (650)
T ss_pred hHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeec
Confidence 1247899999999999999999999997 555656664
No 143
>KOG4574|consensus
Probab=93.05 E-value=0.066 Score=49.41 Aligned_cols=79 Identities=18% Similarity=0.324 Sum_probs=67.1
Q ss_pred cCCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeC--CeeE
Q psy1078 28 DQYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVL--SRTI 105 (199)
Q Consensus 28 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~--g~~l 105 (199)
...+-..+.++-|.+-..+..-|..+|..||.|.++..+++ ...|.|.|...+.|-.|+.+|+|..+. |-+.
T Consensus 293 nv~plqp~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~------~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps 366 (1007)
T KOG4574|consen 293 NVFPLQPKQSLENNAVNLTSSSLATLCSDYGSVASAWTLRD------LNMALVSFSSVESAILALDALQGKEVSVTGAPS 366 (1007)
T ss_pred ccccCcchhhhhcccccchHHHHHHHHHhhcchhhheeccc------ccchhhhhHHHHHHHHhhhhhcCCcccccCCce
Confidence 34455667778888888899999999999999999988776 478999999999999999999997664 8889
Q ss_pred EEEeecC
Q psy1078 106 RVDHVND 112 (199)
Q Consensus 106 ~v~~a~~ 112 (199)
+|.+|+.
T Consensus 367 ~V~~ak~ 373 (1007)
T KOG4574|consen 367 RVSFAKT 373 (1007)
T ss_pred eEEeccc
Confidence 9999865
No 144
>KOG0804|consensus
Probab=92.83 E-value=0.52 Score=40.75 Aligned_cols=69 Identities=19% Similarity=0.334 Sum_probs=57.7
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccC-CCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCC
Q psy1078 32 DSAWIFVGGLPYDLSEGDVICIFSQY-GEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLS 102 (199)
Q Consensus 32 ~~~~l~V~nLp~~~te~~L~~~F~~~-G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g 102 (199)
.+..|+|=.+|-.++--||..|...| -.|..++++++. -..+-..+|.|.+..+|......+||..|..
T Consensus 73 ~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~--~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 73 SSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDG--MPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecC--CCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 37789999999999999999998876 458899999863 2334557899999999999999999988763
No 145
>KOG2193|consensus
Probab=92.24 E-value=0.0061 Score=51.88 Aligned_cols=104 Identities=22% Similarity=0.308 Sum_probs=77.0
Q ss_pred hhHHHHhhchhc-ccCCCCCccc--cCCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEe
Q psy1078 6 NVKNIKKLSEQE-LSSGSKTSWH--DQYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICY 82 (199)
Q Consensus 6 ~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f 82 (199)
|.++++.++++. +....-...+ .....++.+-|.|+|+....+.|..++..||.+..|..+. +..-....-|+|
T Consensus 50 a~kaie~~sgk~elqGkr~e~~~sv~kkqrsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvn---t~~etavvnvty 126 (584)
T KOG2193|consen 50 ANKAIETLSGKVELQGKRQEVEHSVPKKQRSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVN---TDSETAVVNVTY 126 (584)
T ss_pred hhhhHHhhchhhhhcCceeeccchhhHHHHhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhc---cchHHHHHHHHH
Confidence 567888888774 3332111111 1224567799999999999999999999999999886532 222234456789
Q ss_pred cCHHHHHHHHHhhCCCEeCCeeEEEEeecC
Q psy1078 83 EDQRSTVLSVDNLNGVKVLSRTIRVDHVND 112 (199)
Q Consensus 83 ~~~~~a~~Ai~~lng~~i~g~~l~v~~a~~ 112 (199)
...+.+..||..|+|..+....++|.|...
T Consensus 127 ~~~~~~~~ai~kl~g~Q~en~~~k~~YiPd 156 (584)
T KOG2193|consen 127 SAQQQHRQAIHKLNGPQLENQHLKVGYIPD 156 (584)
T ss_pred HHHHHHHHHHHhhcchHhhhhhhhcccCch
Confidence 999999999999999999999999988643
No 146
>KOG2591|consensus
Probab=92.12 E-value=0.35 Score=42.89 Aligned_cols=71 Identities=10% Similarity=0.197 Sum_probs=54.9
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhcc--CCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCC--CEeCCee
Q psy1078 29 QYKDSAWIFVGGLPYDLSEGDVICIFSQ--YGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNG--VKVLSRT 104 (199)
Q Consensus 29 ~~~~~~~l~V~nLp~~~te~~L~~~F~~--~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng--~~i~g~~ 104 (199)
+...-|.|+++-||..+..++++.||.. +-.+.+|.+..+. -=||+|.+..+|+.|...|.. ..|.|+.
T Consensus 171 p~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylreevk~fqgKp 243 (684)
T KOG2591|consen 171 PNHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLREEVKTFQGKP 243 (684)
T ss_pred cCcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHHHHHHhhcCcc
Confidence 3455688999999999999999999974 6678888776542 258999999999999877654 4555655
Q ss_pred EE
Q psy1078 105 IR 106 (199)
Q Consensus 105 l~ 106 (199)
|.
T Consensus 244 Im 245 (684)
T KOG2591|consen 244 IM 245 (684)
T ss_pred hh
Confidence 43
No 147
>KOG2891|consensus
Probab=90.47 E-value=0.11 Score=42.25 Aligned_cols=80 Identities=25% Similarity=0.468 Sum_probs=50.9
Q ss_pred CcEEEEeCCCCCC------------CHHHHHHHhccCCCeEEEEEeec-C----CCCCc-----ceEE---------EEE
Q psy1078 33 SAWIFVGGLPYDL------------SEGDVICIFSQYGEIVNLNLVRD-K----ITGKS-----KGFC---------FIC 81 (199)
Q Consensus 33 ~~~l~V~nLp~~~------------te~~L~~~F~~~G~i~~~~~~~~-~----~~g~~-----~g~a---------fV~ 81 (199)
..|||+.+||..| +++-|+..|..||.|..|.|+.. | .+|+. .||+ ||+
T Consensus 149 pdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvq 228 (445)
T KOG2891|consen 149 PDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQ 228 (445)
T ss_pred CCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHH
Confidence 4578888887654 56889999999999999887633 2 23443 3443 355
Q ss_pred ecCHHHHHHHHHhhCCCEe----CCe----eEEEEeecC
Q psy1078 82 YEDQRSTVLSVDNLNGVKV----LSR----TIRVDHVND 112 (199)
Q Consensus 82 f~~~~~a~~Ai~~lng~~i----~g~----~l~v~~a~~ 112 (199)
|........|+..|.|..+ +|. .++|+|..+
T Consensus 229 fmeykgfa~amdalr~~k~akk~d~~ffqanvkvdfdrs 267 (445)
T KOG2891|consen 229 FMEYKGFAQAMDALRGMKLAKKGDDGFFQANVKVDFDRS 267 (445)
T ss_pred HHHHHhHHHHHHHHhcchHHhhcCCcccccccccccchh
Confidence 5555555666777777543 233 466666443
No 148
>KOG4454|consensus
Probab=89.53 E-value=0.086 Score=41.35 Aligned_cols=71 Identities=21% Similarity=0.435 Sum_probs=58.3
Q ss_pred cEEEEeC----CCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeE
Q psy1078 34 AWIFVGG----LPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTI 105 (199)
Q Consensus 34 ~~l~V~n----Lp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l 105 (199)
.+++.|+ |...++.+.+...|+..|+|..+++..+. .|.++.++|+.|.-....-.++....+..+--+++
T Consensus 81 ~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~-d~rnrn~~~~~~qr~~~~P~~~~~y~~l~~~~~~~ 155 (267)
T KOG4454|consen 81 RTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDN-DGRNRNFGFVTYQRLCAVPFALDLYQGLELFQKKV 155 (267)
T ss_pred cccccCCCcchhhhhcchhhheeeecccCCCCCccccccc-cCCccCccchhhhhhhcCcHHhhhhcccCcCCCCc
Confidence 4566677 77788999999999999999999999886 58999999999999888888888777765544433
No 149
>KOG4676|consensus
Probab=86.07 E-value=0.12 Score=43.80 Aligned_cols=63 Identities=14% Similarity=0.056 Sum_probs=52.4
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeC
Q psy1078 34 AWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVL 101 (199)
Q Consensus 34 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~ 101 (199)
++|||++|+..+-..++-.+|..+|.|....|. .|-...||-|.|........|+ .++|..+.
T Consensus 152 Rt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~a----sk~~s~~c~~sf~~qts~~hal-r~~gre~k 214 (479)
T KOG4676|consen 152 RTREVQSLISAAILPESGESFERKGEVSYAHTA----SKSRSSSCSHSFRKQTSSKHAL-RSHGRERK 214 (479)
T ss_pred hhhhhhcchhhhcchhhhhhhhhcchhhhhhhh----ccCCCcchhhhHhhhhhHHHHH-Hhcchhhh
Confidence 679999999999999999999999999988774 3445677889999988888888 55666555
No 150
>KOG4410|consensus
Probab=84.20 E-value=2.9 Score=34.27 Aligned_cols=46 Identities=15% Similarity=0.244 Sum_probs=36.1
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCCCe-EEEEEeecCCCCCcceEEEEEecCH
Q psy1078 34 AWIFVGGLPYDLSEGDVICIFSQYGEI-VNLNLVRDKITGKSKGFCFICYEDQ 85 (199)
Q Consensus 34 ~~l~V~nLp~~~te~~L~~~F~~~G~i-~~~~~~~~~~~g~~~g~afV~f~~~ 85 (199)
.-|||+|||.++.-.||+..+...|-+ .++.|. .+.|-||+.|.+.
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswk------g~~~k~flh~~~~ 377 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECTPMSISWK------GHFGKCFLHFGNR 377 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCCceeEeee------cCCcceeEecCCc
Confidence 469999999999999999999887643 455553 2367899999765
No 151
>KOG4019|consensus
Probab=81.59 E-value=1.3 Score=33.86 Aligned_cols=75 Identities=11% Similarity=0.079 Sum_probs=54.7
Q ss_pred cEEEEeCCCCCCCH-----HHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCe-eEEE
Q psy1078 34 AWIFVGGLPYDLSE-----GDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSR-TIRV 107 (199)
Q Consensus 34 ~~l~V~nLp~~~te-----~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~-~l~v 107 (199)
.++++++++..+-. .....+|.+|.+....++++. .++.-|.|.+...|..|...+++..|.|. .++.
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrs------frrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~ 84 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRS------FRRVRINFSNPEAAADARIKLHSTSFNGKNELKL 84 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHh------hceeEEeccChhHHHHHHHHhhhcccCCCceEEE
Confidence 34778888776532 344567777776666555533 45667899999999999999999999988 7777
Q ss_pred EeecCCC
Q psy1078 108 DHVNDYK 114 (199)
Q Consensus 108 ~~a~~~~ 114 (199)
-++.+..
T Consensus 85 yfaQ~~~ 91 (193)
T KOG4019|consen 85 YFAQPGH 91 (193)
T ss_pred EEccCCC
Confidence 7776643
No 152
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=79.48 E-value=3 Score=32.47 Aligned_cols=62 Identities=26% Similarity=0.374 Sum_probs=43.9
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHH
Q psy1078 31 KDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSV 92 (199)
Q Consensus 31 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai 92 (199)
.....+++++++..++...+..+|..+|.+....+...........+.++.+.....+..++
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (306)
T COG0724 223 EKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGNEASKDALESN 284 (306)
T ss_pred cccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccchhHHHhhhhhh
Confidence 45678999999999999999999999999977777655433334444555444444444444
No 153
>KOG2295|consensus
Probab=78.96 E-value=0.27 Score=43.48 Aligned_cols=75 Identities=9% Similarity=0.135 Sum_probs=56.8
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeE
Q psy1078 31 KDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTI 105 (199)
Q Consensus 31 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l 105 (199)
...|.|||.|+++.++-.+|..++..+--+..+.+.....-.....+++|+|.---...-|+.+||++.+....+
T Consensus 229 hke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~~~ 303 (648)
T KOG2295|consen 229 HKECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSNFL 303 (648)
T ss_pred hHHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccccccc
Confidence 456889999999999999999999988666665553332223345778999998888888888999987765443
No 154
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=77.72 E-value=3.3 Score=29.35 Aligned_cols=55 Identities=9% Similarity=0.244 Sum_probs=30.1
Q ss_pred EEEEeCCCCCC---------CHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCH-HHHHHHH
Q psy1078 35 WIFVGGLPYDL---------SEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQ-RSTVLSV 92 (199)
Q Consensus 35 ~l~V~nLp~~~---------te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~-~~a~~Ai 92 (199)
+++|-|++... +...|...|..|.++. +..+.+. ..++|++.|.|..- .-...|+
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~--~gh~g~aiv~F~~~w~Gf~~A~ 74 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGK--QGHTGFAIVEFNKDWSGFKNAM 74 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEET--TEEEEEEEEE--SSHHHHHHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCC--CCCcEEEEEEECCChHHHHHHH
Confidence 45666765443 4478999999998875 5555654 46789999999853 3344444
No 155
>KOG4483|consensus
Probab=76.50 E-value=6.9 Score=33.65 Aligned_cols=54 Identities=11% Similarity=0.252 Sum_probs=45.6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCC-eEEEEEeecCCCCCcceEEEEEecCHHHHHHHHH
Q psy1078 33 SAWIFVGGLPYDLSEGDVICIFSQYGE-IVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVD 93 (199)
Q Consensus 33 ~~~l~V~nLp~~~te~~L~~~F~~~G~-i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~ 93 (199)
.+.|-|-++|.....+||...|..||. --.|.|+-+ -.+|..|.+...|..||.
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDd-------thalaVFss~~~AaeaLt 445 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDD-------THALAVFSSVNRAAEALT 445 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcCCceeEEeec-------ceeEEeecchHHHHHHhh
Confidence 467889999999999999999999975 346777755 579999999999999983
No 156
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=71.93 E-value=9.1 Score=24.35 Aligned_cols=61 Identities=11% Similarity=0.163 Sum_probs=42.9
Q ss_pred HHHHHHhccCC-CeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEEeec
Q psy1078 48 GDVICIFSQYG-EIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHVN 111 (199)
Q Consensus 48 ~~L~~~F~~~G-~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~a~ 111 (199)
++|..-|...| +|..+.-+..+.++.+...-||++....+...++ +=..|+|..|.|....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i~---~Ik~l~~~~V~vE~~~ 63 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEIY---KIKTLCGQRVKVERPR 63 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCcccccee---ehHhhCCeEEEEecCC
Confidence 45667777766 5777777777667778888899988765533332 3367888899998864
No 157
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=66.03 E-value=12 Score=24.98 Aligned_cols=45 Identities=18% Similarity=0.240 Sum_probs=31.6
Q ss_pred EEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEec
Q psy1078 36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYE 83 (199)
Q Consensus 36 l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~ 83 (199)
||||+++..+.+.-...+....+.-.-+-+..+ ....||+|-++-
T Consensus 28 VyVg~~s~rVRe~lW~~v~~~~~~G~a~m~~~~---~neqG~~~~t~G 72 (86)
T PF09707_consen 28 VYVGNVSARVRERLWERVTEWIGDGSAVMVWSD---NNEQGFDFRTLG 72 (86)
T ss_pred cEEcCCCHHHHHHHHHHHHhhCCCccEEEEEcc---CCCCCEEEEEeC
Confidence 999999999988777777665554444433333 227899998874
No 158
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=61.51 E-value=20 Score=22.90 Aligned_cols=61 Identities=8% Similarity=0.057 Sum_probs=42.5
Q ss_pred HHHHHHhccCC-CeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEEeec
Q psy1078 48 GDVICIFSQYG-EIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHVN 111 (199)
Q Consensus 48 ~~L~~~F~~~G-~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~a~ 111 (199)
.+|..-|..+| ++..+.-+..+.++.+...-||+.....+... -|+=..|+|++|.|....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~ 63 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPH 63 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCc
Confidence 35677788887 57788888777667777888888876543333 233366788998888753
No 159
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=58.28 E-value=22 Score=28.94 Aligned_cols=34 Identities=21% Similarity=0.353 Sum_probs=25.9
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEe
Q psy1078 33 SAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLV 66 (199)
Q Consensus 33 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~ 66 (199)
.....|+|||++++..-|..++...-.+....++
T Consensus 95 ~~~~vVaNlPY~Isspii~kll~~~~~~~~~v~M 128 (259)
T COG0030 95 QPYKVVANLPYNISSPILFKLLEEKFIIQDMVLM 128 (259)
T ss_pred CCCEEEEcCCCcccHHHHHHHHhccCccceEEEE
Confidence 4567899999999999999998866555444444
No 160
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=58.28 E-value=26 Score=28.95 Aligned_cols=79 Identities=11% Similarity=0.244 Sum_probs=56.8
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecC-------CCCCcceEEEEEecCHHHHHHHHH----hhCC--CE
Q psy1078 33 SAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDK-------ITGKSKGFCFICYEDQRSTVLSVD----NLNG--VK 99 (199)
Q Consensus 33 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~-------~~g~~~g~afV~f~~~~~a~~Ai~----~lng--~~ 99 (199)
++.|...|+..+++--.+...|-.||+|.+|.++.+. ...+...-..+-|-+.+.|..... .|.. ..
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~~ 94 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKTK 94 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHHh
Confidence 4668889999889888888889999999999998764 112344667888988888765432 2221 34
Q ss_pred eCCeeEEEEeec
Q psy1078 100 VLSRTIRVDHVN 111 (199)
Q Consensus 100 i~g~~l~v~~a~ 111 (199)
+....|.|.|..
T Consensus 95 L~S~~L~lsFV~ 106 (309)
T PF10567_consen 95 LKSESLTLSFVS 106 (309)
T ss_pred cCCcceeEEEEE
Confidence 567777777764
No 161
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=53.69 E-value=20 Score=24.56 Aligned_cols=48 Identities=15% Similarity=0.117 Sum_probs=31.5
Q ss_pred EEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCH
Q psy1078 35 WIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQ 85 (199)
Q Consensus 35 ~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~ 85 (199)
-||||+++..+.+.-...+-..++.-.-+-+..+ ....||+|-++...
T Consensus 29 GVyVg~~S~rVRd~lW~~v~~~~~~G~avmv~~~---~~eqG~~~~t~G~~ 76 (97)
T PRK11558 29 GVYVGDVSRRIREMIWQQVTQLAEEGNVVMAWAT---NTESGFEFQTFGEN 76 (97)
T ss_pred CcEEcCCCHHHHHHHHHHHHHhCCCCcEEEEEcC---CCCCCcEEEecCCC
Confidence 3999999999988766666665655333333322 23349999987764
No 162
>KOG1295|consensus
Probab=52.89 E-value=22 Score=30.34 Aligned_cols=69 Identities=13% Similarity=0.180 Sum_probs=46.0
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCC-eEEEEEeecCC--CCCcceEEEEEecCHHHHHHHHHhhCCCEeC
Q psy1078 33 SAWIFVGGLPYDLSEGDVICIFSQYGE-IVNLNLVRDKI--TGKSKGFCFICYEDQRSTVLSVDNLNGVKVL 101 (199)
Q Consensus 33 ~~~l~V~nLp~~~te~~L~~~F~~~G~-i~~~~~~~~~~--~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~ 101 (199)
-..|.|.+||+..++.+|......|-. +....+..... .....+.+||.|...++.......++|+.+.
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifl 78 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFL 78 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEe
Confidence 356889999999999988877776532 11112211100 0123577899999999988888888886653
No 163
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=52.40 E-value=32 Score=21.50 Aligned_cols=18 Identities=39% Similarity=0.573 Sum_probs=15.0
Q ss_pred HHHHHHhccCCCeEEEEE
Q psy1078 48 GDVICIFSQYGEIVNLNL 65 (199)
Q Consensus 48 ~~L~~~F~~~G~i~~~~~ 65 (199)
.+||.+|+..|+|.-+.+
T Consensus 9 ~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHhcCcEEEEEE
Confidence 579999999999876554
No 164
>KOG4365|consensus
Probab=51.64 E-value=2.3 Score=36.90 Aligned_cols=78 Identities=4% Similarity=-0.233 Sum_probs=56.2
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEEeecC
Q psy1078 34 AWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHVND 112 (199)
Q Consensus 34 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~a~~ 112 (199)
.+.|+..||..+++.+|..+|.-||-|..+.+.+.-..|...-.+||.... ..|..+|..+.-..+.|..++|..+..
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~~ 81 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSPS 81 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCch
Confidence 346778899999999999999999999888765554445556667776554 345566666655667777777777643
No 165
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=50.53 E-value=61 Score=28.23 Aligned_cols=81 Identities=16% Similarity=0.322 Sum_probs=56.0
Q ss_pred CCCCcEEEEeCCCCC-CCHHHHHHHhccC----CCeEEEEEeecC----------CCC----------------------
Q psy1078 30 YKDSAWIFVGGLPYD-LSEGDVICIFSQY----GEIVNLNLVRDK----------ITG---------------------- 72 (199)
Q Consensus 30 ~~~~~~l~V~nLp~~-~te~~L~~~F~~~----G~i~~~~~~~~~----------~~g---------------------- 72 (199)
...+.+|-|-||.|. +...+|..+|+.| |.|..|.|.... ..|
T Consensus 143 G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iypsefGkeRm~~e~vqGpprdif~~~d~~~ssqk~~~dn 222 (622)
T COG5638 143 GNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPSEFGKERMAAEHVQGPPRDIFTPADNQPSSQKFGDDN 222 (622)
T ss_pred CCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechhhhhHHHHhHhhccCCchhhccccccCcchhccCCcc
Confidence 345678999999998 6778999998866 566666653211 001
Q ss_pred ----C-----------------------------cceEEEEEecCHHHHHHHHHhhCCCEeC--CeeEEEEee
Q psy1078 73 ----K-----------------------------SKGFCFICYEDQRSTVLSVDNLNGVKVL--SRTIRVDHV 110 (199)
Q Consensus 73 ----~-----------------------------~~g~afV~f~~~~~a~~Ai~~lng~~i~--g~~l~v~~a 110 (199)
+ ..-||.|.+.+...+......++|..+. +..+-+.|.
T Consensus 223 ~~sd~d~g~d~~~Egd~g~e~d~~~lrqyqlerlryYyAvvec~d~~tsK~iY~~CDG~Eye~san~~DLRfv 295 (622)
T COG5638 223 VFSDRDAGEDALIEGDRGNEFDMVKLRQYQLERLRYYYAVVECEDIETSKNIYSACDGVEYENSANVLDLRFV 295 (622)
T ss_pred chhhhhcchhhhhhcccccchhHHHHHHHHhhhheeEEEEEEeccchhhHHHHhccCccccccccceeeeeec
Confidence 0 0237889999999999999999998876 444555553
No 166
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=49.22 E-value=7.6 Score=33.35 Aligned_cols=61 Identities=13% Similarity=0.144 Sum_probs=48.9
Q ss_pred CcEEEEeCCCCCCCHH--------HHHHHhcc--CCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHH
Q psy1078 33 SAWIFVGGLPYDLSEG--------DVICIFSQ--YGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVD 93 (199)
Q Consensus 33 ~~~l~V~nLp~~~te~--------~L~~~F~~--~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~ 93 (199)
.+.+|+.++....... ++...|.. .+++..+.+-++......+|..|++|.....|++++.
T Consensus 174 qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 174 QRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 3568888887776555 89999988 6777788777776567788999999999999998873
No 167
>KOG0226|consensus
Probab=48.77 E-value=4.7 Score=32.55 Aligned_cols=107 Identities=14% Similarity=0.156 Sum_probs=71.5
Q ss_pred cEEEEeCCCCCCCHHH-H--HHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEEee
Q psy1078 34 AWIFVGGLPYDLSEGD-V--ICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHV 110 (199)
Q Consensus 34 ~~l~V~nLp~~~te~~-L--~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~a 110 (199)
..++++++-..+..+- | ...|..|-.+....++++. -+..++++|+.|.......++-..-++..|+-..|++.-+
T Consensus 97 f~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~-p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~g 175 (290)
T KOG0226|consen 97 FRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDR-PQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAG 175 (290)
T ss_pred ccccccccccccCCCCCCcchhhhccchhhhhhhhhhcC-CCccCcccccCcchhhhhhhhccccccccccCcceeeccc
Confidence 4566777665555443 3 5677777777777777774 4778999999999998888888777888888777666654
Q ss_pred cCCCCCCCCCCChhhccceeeccCCCCCCCCC
Q psy1078 111 NDYKPPKDNKYTDEETKKLRTIGCAPGTEFGS 142 (199)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (199)
..-..+. --.++....+||.+.++.....+.
T Consensus 176 tswedPs-l~ew~~~DfRIfcgdlgNevnd~v 206 (290)
T KOG0226|consen 176 TSWEDPS-LAEWDEDDFRIFCGDLGNEVNDDV 206 (290)
T ss_pred cccCCcc-cccCccccceeecccccccccHHH
Confidence 4322221 223345556778777776555433
No 168
>PHA02531 20 portal vertex protein; Provisional
Probab=43.93 E-value=21 Score=31.70 Aligned_cols=24 Identities=29% Similarity=0.436 Sum_probs=20.5
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccC
Q psy1078 34 AWIFVGGLPYDLSEGDVICIFSQY 57 (199)
Q Consensus 34 ~~l~V~nLp~~~te~~L~~~F~~~ 57 (199)
..|=|||||..-.++.|+.+..+|
T Consensus 282 FYiDVGNlPk~KAeqYlr~vm~~y 305 (514)
T PHA02531 282 FYIDVGNLPKRKAEEYLNNVMQRY 305 (514)
T ss_pred EEEEcCCCChhhHHHHHHHHHHHh
Confidence 344489999999999999998887
No 169
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=41.39 E-value=26 Score=28.21 Aligned_cols=32 Identities=25% Similarity=0.563 Sum_probs=24.7
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhc--cCCCeEE
Q psy1078 31 KDSAWIFVGGLPYDLSEGDVICIFS--QYGEIVN 62 (199)
Q Consensus 31 ~~~~~l~V~nLp~~~te~~L~~~F~--~~G~i~~ 62 (199)
.....++|||||+.++..-|..++. .||.+.-
T Consensus 95 ~~~~~~vv~NlPy~is~~il~~ll~~~~~g~~~~ 128 (262)
T PF00398_consen 95 KNQPLLVVGNLPYNISSPILRKLLELYRFGRVRM 128 (262)
T ss_dssp SSSEEEEEEEETGTGHHHHHHHHHHHGGGCEEEE
T ss_pred cCCceEEEEEecccchHHHHHHHhhcccccccce
Confidence 3467899999999999999998886 4554433
No 170
>KOG4213|consensus
Probab=41.09 E-value=36 Score=26.13 Aligned_cols=56 Identities=11% Similarity=0.155 Sum_probs=36.3
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccC-CCeEEEEEeecCCCC--CcceEEEEEecCHHHHHHHHHh
Q psy1078 33 SAWIFVGGLPYDLSEGDVICIFSQY-GEIVNLNLVRDKITG--KSKGFCFICYEDQRSTVLSVDN 94 (199)
Q Consensus 33 ~~~l~V~nLp~~~te~~L~~~F~~~-G~i~~~~~~~~~~~g--~~~g~afV~f~~~~~a~~Ai~~ 94 (199)
.+++|.. .|+++|..+..-- |.+..+.+-+.. .+ ..+|-.||+|.+.+.|.+++..
T Consensus 111 ~r~v~~K-----~td~ql~~l~qw~~~k~~nv~mr~~~-~k~~~fkGsvkv~f~tk~qa~a~~~~ 169 (205)
T KOG4213|consen 111 ERTVYKK-----ITDDQLDDLNQWASGKGHNVKMRRHG-NKAHPFKGSVKVTFQTKEQAFANDDT 169 (205)
T ss_pred Hhhhhcc-----CCHHHHHHHHHHhcccceEeeccccC-CCCCCCCCceEEEeecHHHHHhhhhh
Confidence 3566664 4554444433211 788888775442 23 5678899999999999987744
No 171
>PF07230 Peptidase_S80: Bacteriophage T4-like capsid assembly protein (Gp20); InterPro: IPR010823 This family of proteins is essential for capsid assembly in the T4-like bacteriophages []. Gp20 forms a unique 12 subunit portal vertex through which DNA enters during packaging and exits during infection. The Gp20 vertex acts as an initiator for the assembly of the major capsid protein and the scaffolding proteins into a prolate icosahedron of precise dimensions. The regulation of portal protein gene expression is an important regulator of prohead assembly in bacteriophage T4 [].
Probab=40.70 E-value=16 Score=32.34 Aligned_cols=39 Identities=33% Similarity=0.460 Sum_probs=27.7
Q ss_pred CCCcEEE---EeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCC
Q psy1078 31 KDSAWIF---VGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGK 73 (199)
Q Consensus 31 ~~~~~l~---V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~ 73 (199)
.+.++|| |||||..-.++.|+.+..+|- -+++.+..||.
T Consensus 273 APeRRvFyIDvGnlpk~KAeqyl~~iM~k~k----nklvYDa~TGe 314 (501)
T PF07230_consen 273 APERRVFYIDVGNLPKQKAEQYLRDIMNKYK----NKLVYDASTGE 314 (501)
T ss_pred CccceEEEEECCCCChHhHHHHHHHHHHHhc----ceeeecCCCCe
Confidence 3444555 899999999999999988872 24455555554
No 172
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=40.69 E-value=64 Score=21.17 Aligned_cols=36 Identities=11% Similarity=0.269 Sum_probs=24.8
Q ss_pred CeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCE
Q psy1078 59 EIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVK 99 (199)
Q Consensus 59 ~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~ 99 (199)
.|.++..+ ...+||-||+=.+..++..|+..+.+..
T Consensus 33 ~I~Si~~~-----~~lkGyIyVEA~~~~~V~~ai~gi~~i~ 68 (84)
T PF03439_consen 33 NIYSIFAP-----DSLKGYIYVEAERESDVKEAIRGIRHIR 68 (84)
T ss_dssp ---EEEE------TTSTSEEEEEESSHHHHHHHHTT-TTEE
T ss_pred ceEEEEEe-----CCCceEEEEEeCCHHHHHHHHhccccee
Confidence 45555554 3368999999999999999998876643
No 173
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=40.65 E-value=34 Score=28.31 Aligned_cols=32 Identities=19% Similarity=0.380 Sum_probs=23.7
Q ss_pred EEEEecCHHHHHHHHHhhCCCEeCCeeEEEEeec
Q psy1078 78 CFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHVN 111 (199)
Q Consensus 78 afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~a~ 111 (199)
|||+|.+..+|+.|++.+.... ++.+.|..|.
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~AP 32 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAP 32 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCC
Confidence 7999999999999998654433 3455666654
No 174
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=40.16 E-value=45 Score=22.41 Aligned_cols=65 Identities=11% Similarity=0.084 Sum_probs=33.6
Q ss_pred EEEEecCHHHHHHHHHhhCC--CEeCCeeEEEEee--cCCCCCCCCCCChhhccceeeccCCCCCCCCCC
Q psy1078 78 CFICYEDQRSTVLSVDNLNG--VKVLSRTIRVDHV--NDYKPPKDNKYTDEETKKLRTIGCAPGTEFGSI 143 (199)
Q Consensus 78 afV~f~~~~~a~~Ai~~lng--~~i~g~~l~v~~a--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (199)
|+|+|.....|+..+. +.. ..+++..+.|.-. ......+-.-...-..+.+.+.|++...+++.+
T Consensus 1 AlITF~e~~VA~~i~~-~~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l 69 (88)
T PF07292_consen 1 ALITFEEEGVAQRILK-KKKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEEL 69 (88)
T ss_pred CEEEeCcHHHHHHHHh-CCEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhh
Confidence 6899999999999884 333 3455665555432 211111111111223345666666654444443
No 175
>KOG4008|consensus
Probab=39.07 E-value=27 Score=27.95 Aligned_cols=36 Identities=19% Similarity=0.328 Sum_probs=29.9
Q ss_pred cCCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEE
Q psy1078 28 DQYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNL 63 (199)
Q Consensus 28 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~ 63 (199)
.......+||+-|+|..+|++.|..+.++.|-+..+
T Consensus 35 s~~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~ 70 (261)
T KOG4008|consen 35 SNSNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQEL 70 (261)
T ss_pred cccccccceeeecccccccHHHHHHHHHHhhhhhhe
Confidence 445667789999999999999999999998855443
No 176
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=37.98 E-value=1.3e+02 Score=26.91 Aligned_cols=64 Identities=13% Similarity=0.196 Sum_probs=42.0
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhc----cCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhC
Q psy1078 32 DSAWIFVGGLPYDLSEGDVICIFS----QYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLN 96 (199)
Q Consensus 32 ~~~~l~V~nLp~~~te~~L~~~F~----~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~ln 96 (199)
++..+.++.-....+..+|..+|. .+|-|..+.+-..+. .......++.|.+..+|..|+..+.
T Consensus 188 ~G~i~~~~~~~~~~~g~dl~~l~~Gs~GtlGIIt~atlkl~p~-p~~~~~~~~~f~~~~~a~~~~~~~~ 255 (499)
T PRK11230 188 DGEALTLGSDALDSPGFDLLALFTGSEGMLGVVTEVTVKLLPK-PPVARVLLASFDSVEKAGLAVGDII 255 (499)
T ss_pred CCcEEEeCCccCCCCccchHhhhccCCCccEEEEEEEEEEEcC-CcceEEEEEECCCHHHHHHHHHHHH
Confidence 344455543333334456777665 678888887765542 3445677889999999999987764
No 177
>PF05189 RTC_insert: RNA 3'-terminal phosphate cyclase (RTC), insert domain; InterPro: IPR013796 RNA cyclases are a family of RNA-modifying enzymes that are conserved in eukaryotes, bacteria and archaea. RNA 3'-terminal phosphate cyclase (6.5.1.4 from EC) [, ] catalyses the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. ATP + RNA 3'-terminal-phosphate = AMP + diphosphate + RNA terminal-2',3'-cyclic-phosphate These enzymes might be responsible for production of the cyclic phosphate RNA ends that are known to be required by many RNA ligases in both prokaryotes and eukaryotes. RNA cyclase is a protein of from 36 to 42 kDa. The best conserved region is a glycine-rich stretch of residues located in the central part of the sequence and which is reminiscent of various ATP, GTP or AMP glycine-rich loops. The crystal structure of RNA 3'-terminal phosphate cyclase shows that each molecule consists of two domains. The larger domain contains three repeats of a folding unit comprising two parallel alpha helices and a four-stranded beta sheet; this fold was previously identified in translation initiation factor 3 (IF3). The large domain is similar to one of the two domains of 5-enolpyruvylshikimate-3-phosphate synthase and UDP-N-acetylglucosamine enolpyruvyl transferase. The smaller domain uses a similar secondary structure element with different topology, observed in many other proteins such as thioredoxin []. Although the active site of this enzyme could not be unambiguously assigned, it can be mapped to a region surrounding His309, an adenylate acceptor, in which a number of amino acids are highly conserved in the enzyme from different sources []. This entry contains the insert-domain of approximately 100 amino acids.; PDB: 3TV1_B 3KGD_D 1QMI_D 1QMH_B 3TUX_A 3TUT_A 3TW3_A 3PQV_A.
Probab=36.82 E-value=1.1e+02 Score=20.64 Aligned_cols=49 Identities=20% Similarity=0.203 Sum_probs=29.2
Q ss_pred EEEEeCCCCCCCHHHH---HHHhccCCCeEEEEE--eecCCCCCcceEEEEEec
Q psy1078 35 WIFVGGLPYDLSEGDV---ICIFSQYGEIVNLNL--VRDKITGKSKGFCFICYE 83 (199)
Q Consensus 35 ~l~V~nLp~~~te~~L---~~~F~~~G~i~~~~~--~~~~~~g~~~g~afV~f~ 83 (199)
..|+.+||..+.+.++ +..|..+++-..|.+ ......+.+.|++.+.+.
T Consensus 12 ~a~~a~lp~~va~R~~~~a~~~L~~~~~~v~i~~d~~~~~~~~~~~G~gi~l~a 65 (103)
T PF05189_consen 12 IAFVAGLPSSVAERMANAARKRLNWYGPDVEIETDYRESDDSAFGPGSGISLVA 65 (103)
T ss_dssp EEEEESS-CHHHHHHHHHHHHHHCTTCSEEEEEEEEE-CCCCGCSSEEEEEEEE
T ss_pred EEEEcCCCHHHHHHHHHHHHHHhhhhCCCeEEEEecccCccCCCCCceEEEEEE
Confidence 4689999999988655 456667765455544 112234566777655443
No 178
>TIGR01873 cas_CT1978 CRISPR-associated endoribonuclease Cas2, E. coli subfamily. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model represents a minor branch of the Cas2 family of CRISPR-associated endonuclease, whereas most Cas2 proteins are modeled instead by TIGR01573. This form of Cas2 is characteristic for the Ecoli subtype of CRISPR/Cas locus.
Probab=35.96 E-value=63 Score=21.66 Aligned_cols=47 Identities=17% Similarity=0.247 Sum_probs=28.5
Q ss_pred EEEEeCCCCCCCHHHHHHHhcc-CCCeEEEEEeecCCCCCcceEEEEEecC
Q psy1078 35 WIFVGGLPYDLSEGDVICIFSQ-YGEIVNLNLVRDKITGKSKGFCFICYED 84 (199)
Q Consensus 35 ~l~V~nLp~~~te~~L~~~F~~-~G~i~~~~~~~~~~~g~~~g~afV~f~~ 84 (199)
-||||+++..+.+.-...+-.. .+.- .+.+... +....||.|-++..
T Consensus 27 GVyVg~~s~rVRe~lW~~v~~~~~~~G-~avm~~~--~~~e~G~~~~t~G~ 74 (87)
T TIGR01873 27 GVYVGGVSASVRERIWDYLAQHCPPKG-SLVITWS--SNTCPGFEFFTLGE 74 (87)
T ss_pred CcEEcCCCHHHHHHHHHHHHHhCCCCc-cEEEEEe--CCCCCCcEEEecCC
Confidence 3999999999887655444444 3332 2333332 23456899887765
No 179
>COG5507 Uncharacterized conserved protein [Function unknown]
Probab=34.37 E-value=47 Score=22.83 Aligned_cols=21 Identities=14% Similarity=0.230 Sum_probs=17.9
Q ss_pred ceEEEEEecCHHHHHHHHHhh
Q psy1078 75 KGFCFICYEDQRSTVLSVDNL 95 (199)
Q Consensus 75 ~g~afV~f~~~~~a~~Ai~~l 95 (199)
--|.+++|.+.+...+|...|
T Consensus 66 VvFsW~~Y~skq~rDA~~~km 86 (117)
T COG5507 66 VVFSWIEYPSKQVRDAANAKM 86 (117)
T ss_pred EEEEEEEcCchhHHHHHHHHh
Confidence 468999999999999888765
No 180
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=33.39 E-value=52 Score=20.81 Aligned_cols=27 Identities=7% Similarity=0.153 Sum_probs=21.5
Q ss_pred eEEEEEecCHHHHHHHHHhhCCCEeCC
Q psy1078 76 GFCFICYEDQRSTVLSVDNLNGVKVLS 102 (199)
Q Consensus 76 g~afV~f~~~~~a~~Ai~~lng~~i~g 102 (199)
.+.+|.|.+...|.+|-..|....|..
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi~~ 28 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGIPV 28 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCcE
Confidence 468999999999999988777655543
No 181
>KOG3116|consensus
Probab=29.85 E-value=69 Score=23.78 Aligned_cols=26 Identities=0% Similarity=-0.054 Sum_probs=13.2
Q ss_pred CHHHHHHHHHhhCCC--EeCCeeEEEEee
Q psy1078 84 DQRSTVLSVDNLNGV--KVLSRTIRVDHV 110 (199)
Q Consensus 84 ~~~~a~~Ai~~lng~--~i~g~~l~v~~a 110 (199)
+..-|++||+. ..+ ...+.+.+|...
T Consensus 26 ~~~rCQKClq~-GHWtYECk~kRkYihRp 53 (177)
T KOG3116|consen 26 SSARCQKCLQA-GHWTYECKNKRKYIHRP 53 (177)
T ss_pred cchhHHHHHhh-ccceeeecCceeeecCc
Confidence 33467777743 222 233666666553
No 182
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=29.84 E-value=68 Score=25.55 Aligned_cols=25 Identities=20% Similarity=0.300 Sum_probs=21.1
Q ss_pred EEEEeCCCCCCCHHHHHHHhccCCC
Q psy1078 35 WIFVGGLPYDLSEGDVICIFSQYGE 59 (199)
Q Consensus 35 ~l~V~nLp~~~te~~L~~~F~~~G~ 59 (199)
.+.|+|||+.++...|..++..+|.
T Consensus 96 ~~vvsNlPy~i~~~il~~ll~~~~~ 120 (253)
T TIGR00755 96 LKVVSNLPYNISSPLIFKLLEKPKF 120 (253)
T ss_pred ceEEEcCChhhHHHHHHHHhccCCC
Confidence 4889999999999999999975543
No 183
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=29.54 E-value=90 Score=25.26 Aligned_cols=22 Identities=18% Similarity=0.456 Sum_probs=18.8
Q ss_pred EEEEeCCCCCCCHHHHHHHhcc
Q psy1078 35 WIFVGGLPYDLSEGDVICIFSQ 56 (199)
Q Consensus 35 ~l~V~nLp~~~te~~L~~~F~~ 56 (199)
.+.|+|+|+.++..-|..++..
T Consensus 107 ~~vv~NlPY~iss~ii~~~l~~ 128 (272)
T PRK00274 107 LKVVANLPYNITTPLLFHLLEE 128 (272)
T ss_pred ceEEEeCCccchHHHHHHHHhc
Confidence 5789999999998888888753
No 184
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=28.01 E-value=3.7e+02 Score=24.26 Aligned_cols=89 Identities=15% Similarity=0.247 Sum_probs=52.9
Q ss_pred HHHHhhchhc---ccCCCCCccccCCCCCcEEEEeC---CCCCCCHHHHHHHhc----cCCCeEEEEEeecCCCCCcceE
Q psy1078 8 KNIKKLSEQE---LSSGSKTSWHDQYKDSAWIFVGG---LPYDLSEGDVICIFS----QYGEIVNLNLVRDKITGKSKGF 77 (199)
Q Consensus 8 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~V~n---Lp~~~te~~L~~~F~----~~G~i~~~~~~~~~~~g~~~g~ 77 (199)
+.+..|...+ +...-+...-...++..+|.|.| +|...+.+++..+.. .||+.+.-.+++.- +.|.
T Consensus 61 ~~L~~l~~deTLlvqSGkPvgvF~th~~APRVliaNs~lVp~wa~~e~f~~l~~~Gl~mYGQMTAGsw~YIG----~QGI 136 (545)
T TIGR01228 61 ETLKRLENDETLLVQSGKPVGVFKTHENAPRVLIANSNLVPHWADWEHFHELEAKGLMMYGQMTAGSWIYIG----TQGI 136 (545)
T ss_pred HHHHhcCCCceEEEEcCCceeeccCCCCCCeEEEEcCccccCCCCHHHHHHHHHcccccccCccccceEEEc----Ccce
Confidence 3445555554 33444555556667888899987 477778888888865 58988866665542 1233
Q ss_pred EEEEecCHHHHHHHHHhhCCCEeCCe
Q psy1078 78 CFICYEDQRSTVLSVDNLNGVKVLSR 103 (199)
Q Consensus 78 afV~f~~~~~a~~Ai~~lng~~i~g~ 103 (199)
..-+|.+ -+..|-+.+++ .+.|+
T Consensus 137 vqGTyeT--~~~aark~f~~-~L~G~ 159 (545)
T TIGR01228 137 LQGTYET--FAELARQHFGG-SLKGK 159 (545)
T ss_pred eecHHHH--HHHHHHHhcCC-CCcee
Confidence 3334444 34445556655 45554
No 185
>KOG0156|consensus
Probab=27.58 E-value=1.1e+02 Score=27.42 Aligned_cols=60 Identities=13% Similarity=0.074 Sum_probs=43.4
Q ss_pred EEEeCCCCCCCH---HHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeE
Q psy1078 36 IFVGGLPYDLSE---GDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTI 105 (199)
Q Consensus 36 l~V~nLp~~~te---~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l 105 (199)
=+||||+.-... ..|..+-.+||+|-.+.+-.. -.|...+.+.|..|+ .-++..+.+|..
T Consensus 35 PiIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~~---------~~Vviss~~~akE~l-~~~d~~fa~Rp~ 97 (489)
T KOG0156|consen 35 PIIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGSV---------PVVVISSYEAAKEVL-VKQDLEFADRPD 97 (489)
T ss_pred CccccHHHcCCCchhHHHHHHHHHhCCeEEEEecCc---------eEEEECCHHHHHHHH-HhCCccccCCCC
Confidence 358888766543 455566668999997776322 467778999999998 447888888875
No 186
>PF15407 Spo7_2_N: Sporulation protein family 7
Probab=27.57 E-value=27 Score=22.19 Aligned_cols=24 Identities=17% Similarity=0.243 Sum_probs=17.1
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHh
Q psy1078 31 KDSAWIFVGGLPYDLSEGDVICIF 54 (199)
Q Consensus 31 ~~~~~l~V~nLp~~~te~~L~~~F 54 (199)
.-+++||||++|..+-.+.=..++
T Consensus 25 ~tSr~vflG~IP~~W~~~~~~~~~ 48 (67)
T PF15407_consen 25 LTSRRVFLGPIPEIWLQDHRKSWY 48 (67)
T ss_pred HcCceEEECCCChHHHHcCcchHH
Confidence 457899999999988665433333
No 187
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=26.95 E-value=1e+02 Score=17.98 Aligned_cols=27 Identities=7% Similarity=0.035 Sum_probs=22.3
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCCCe
Q psy1078 34 AWIFVGGLPYDLSEGDVICIFSQYGEI 60 (199)
Q Consensus 34 ~~l~V~nLp~~~te~~L~~~F~~~G~i 60 (199)
..+|+.+.........|..++..+|.-
T Consensus 2 ~~~~i~g~~~~~~~~~l~~~i~~~Gg~ 28 (72)
T cd00027 2 LTFVITGDLPSEERDELKELIEKLGGK 28 (72)
T ss_pred CEEEEEecCCCcCHHHHHHHHHHcCCE
Confidence 467888887788889999999999863
No 188
>PRK01178 rps24e 30S ribosomal protein S24e; Reviewed
Probab=26.06 E-value=2.2e+02 Score=19.57 Aligned_cols=46 Identities=28% Similarity=0.317 Sum_probs=23.9
Q ss_pred CCCHHHHHHHhc-cCCCeEEEEEeecC----CCCCcceEEEEEecCHHHHHH
Q psy1078 44 DLSEGDVICIFS-QYGEIVNLNLVRDK----ITGKSKGFCFICYEDQRSTVL 90 (199)
Q Consensus 44 ~~te~~L~~~F~-~~G~i~~~~~~~~~----~~g~~~g~afV~f~~~~~a~~ 90 (199)
..+..+|+.-+. .|+.=....++..- ..|.+.|||.| |.+.+.|.+
T Consensus 30 tpsr~eirekLa~~~~~~~~~vvv~~~~t~fG~g~s~G~a~I-Yds~e~~kk 80 (99)
T PRK01178 30 TPSRKDVRKKLAAMLNADKELVVVRKIKTEYGMGKSKGYAKV-YDDKERARK 80 (99)
T ss_pred CCCHHHHHHHHHHHHCcCCCEEEEEccCccCCCceEEEEEEE-ECCHHHHHh
Confidence 455677766554 56643333333322 12456666666 666665543
No 189
>PF15063 TC1: Thyroid cancer protein 1
Probab=25.43 E-value=39 Score=21.97 Aligned_cols=41 Identities=7% Similarity=-0.036 Sum_probs=31.4
Q ss_pred CCCCccccCCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeE
Q psy1078 21 GSKTSWHDQYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIV 61 (199)
Q Consensus 21 ~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~ 61 (199)
.+...|.......++--+.||-.++....|..+|..-|...
T Consensus 13 ~Ps~~g~~~dt~~RKkasaNIFe~vn~~qlqrLF~~sGD~k 53 (79)
T PF15063_consen 13 SPSVHGYKFDTASRKKASANIFENVNLDQLQRLFQKSGDKK 53 (79)
T ss_pred cCCCCCCCcchHHhhhhhhhhhhccCHHHHHHHHHHccchh
Confidence 44455655555666677889999999999999999998653
No 190
>PF09702 Cas_Csa5: CRISPR-associated protein (Cas_Csa5); InterPro: IPR010157 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor family of Cas protein found in various species of Sulfolobus and Pyrococcus (all archaeal). It is found with two different CRISPR loci in Sulfolobus solfataricus.
Probab=24.79 E-value=1.4e+02 Score=20.62 Aligned_cols=22 Identities=36% Similarity=0.534 Sum_probs=15.0
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHh
Q psy1078 30 YKDSAWIFVGGLPYDLSEGDVICIF 54 (199)
Q Consensus 30 ~~~~~~l~V~nLp~~~te~~L~~~F 54 (199)
..++..+++|.||.+ +++..|+
T Consensus 61 ekeg~~i~~g~lPt~---~eVe~Fl 82 (105)
T PF09702_consen 61 EKEGNYIIVGYLPTD---EEVEDFL 82 (105)
T ss_pred cCCCCEEecCCCCCh---HHHHHHH
Confidence 356788999999954 4555444
No 191
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=24.73 E-value=2.5e+02 Score=19.59 Aligned_cols=73 Identities=12% Similarity=0.158 Sum_probs=37.6
Q ss_pred EEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEec--C------HHHHHHHHHhhCCCEeCCeeEE
Q psy1078 35 WIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYE--D------QRSTVLSVDNLNGVKVLSRTIR 106 (199)
Q Consensus 35 ~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~--~------~~~a~~Ai~~lng~~i~g~~l~ 106 (199)
.||||++|.....+.|+.. .+..|..+.-... .....++-++.|. + ......++..++...-.|.+|.
T Consensus 7 ~l~~G~~~~~~~~~~l~~~--gi~~Vi~l~~~~~--~~~~~~~~~~~ipi~D~~~~~~~~~~~~~~~~i~~~~~~~~~Vl 82 (138)
T smart00195 7 HLYLGSYSSALNLALLKKL--GITHVINVTNEVP--NLNKKGFTYLGVPILDNTETKISPYFPEAVEFIEDAEKKGGKVL 82 (138)
T ss_pred CeEECChhHcCCHHHHHHc--CCCEEEEccCCCC--CCCCCCCEEEEEECCCCCCCChHHHHHHHHHHHHHHhcCCCeEE
Confidence 4999999977754444432 3444555432211 1123444554443 2 1223445555554445577777
Q ss_pred EEeec
Q psy1078 107 VDHVN 111 (199)
Q Consensus 107 v~~a~ 111 (199)
|....
T Consensus 83 VHC~~ 87 (138)
T smart00195 83 VHCQA 87 (138)
T ss_pred EECCC
Confidence 77654
No 192
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=24.45 E-value=91 Score=25.77 Aligned_cols=28 Identities=18% Similarity=0.226 Sum_probs=21.3
Q ss_pred EEEEeCCCCCCCHHHHHHHhccCCCeEE
Q psy1078 35 WIFVGGLPYDLSEGDVICIFSQYGEIVN 62 (199)
Q Consensus 35 ~l~V~nLp~~~te~~L~~~F~~~G~i~~ 62 (199)
.+.|+|||+.++...|..++.....+..
T Consensus 103 d~VvaNlPY~Istpil~~ll~~~~~~~~ 130 (294)
T PTZ00338 103 DVCVANVPYQISSPLVFKLLAHRPLFRC 130 (294)
T ss_pred CEEEecCCcccCcHHHHHHHhcCCCCce
Confidence 4789999999999998888864333333
No 193
>PF07237 DUF1428: Protein of unknown function (DUF1428); InterPro: IPR009874 This family consists of several hypothetical bacterial and one archaeal sequence of around 120 residues in length. The function of this family is unknown.; PDB: 2OKQ_A.
Probab=23.49 E-value=2.6e+02 Score=19.37 Aligned_cols=46 Identities=15% Similarity=0.231 Sum_probs=28.8
Q ss_pred HHHHhccCCCeEEEEEeec-CCCCC--------------cceEEEEEecCHHHHHHHHHhh
Q psy1078 50 VICIFSQYGEIVNLNLVRD-KITGK--------------SKGFCFICYEDQRSTVLSVDNL 95 (199)
Q Consensus 50 L~~~F~~~G~i~~~~~~~~-~~~g~--------------~~g~afV~f~~~~~a~~Ai~~l 95 (199)
.-.+|..||.+.-+.-.-+ -..|+ .--|.+|.|.+.+...++...+
T Consensus 25 a~~vf~e~GAl~~vE~wgdDvp~G~~TsF~~Av~a~~~E~VVFSWi~wpska~rD~~~~k~ 85 (103)
T PF07237_consen 25 AAEVFKEHGALRVVECWGDDVPDGKVTSFPRAVKAKPDETVVFSWIEWPSKATRDAANAKM 85 (103)
T ss_dssp HHHHHHHTT-SEEEEEEEEE----SS--HHHHTT--TTEEEEEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHhCCEEEEEeecCcCCcCccCCHHHHhcCCCCCEEEEEEEEcCCHHHHHHHHHHh
Confidence 3468899998765533222 11232 2358999999999998887664
No 194
>KOG3702|consensus
Probab=21.88 E-value=53 Score=30.22 Aligned_cols=70 Identities=11% Similarity=0.023 Sum_probs=53.7
Q ss_pred EEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeE
Q psy1078 35 WIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTI 105 (199)
Q Consensus 35 ~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l 105 (199)
+||+-+--..-+..-+..++..++.+....++.....+...+-+|+.|.....+..|. .|.+..+....+
T Consensus 513 ~i~~~~~~~~s~~~s~s~~s~~~~~ltk~k~l~~Cky~~~Ct~a~Ce~~HPtaa~~~~-s~p~k~fa~~~~ 582 (681)
T KOG3702|consen 513 TIFVANGHGGSNPDSLSRHSEKKNELTKAKILTRCKYGPACTSAECEFAHPTAAENAK-SLPNKKFASKCL 582 (681)
T ss_pred ceecccccccCCCcchhhCcccccccccceeeccccCCCcCCchhhhhcCCcchhhhh-ccccccccccce
Confidence 7888777777777778888888999998888877777888888999999999987765 455554444433
No 195
>KOG0115|consensus
Probab=21.85 E-value=1e+02 Score=25.14 Aligned_cols=45 Identities=16% Similarity=0.216 Sum_probs=34.1
Q ss_pred HHHHHHHHHhhCCCEeCCeeEEEEeecCCCCCCCCCCChhhccceeeccCCCCCCCCCC
Q psy1078 85 QRSTVLSVDNLNGVKVLSRTIRVDHVNDYKPPKDNKYTDEETKKLRTIGCAPGTEFGSI 143 (199)
Q Consensus 85 ~~~a~~Ai~~lng~~i~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (199)
..-|+.|-..|++....|+.|.|.||.. ..|+|.++.+.+.-+.+
T Consensus 4 rt~ae~ak~eLd~~~~~~~~lr~rfa~~--------------a~l~V~nl~~~~sndll 48 (275)
T KOG0115|consen 4 RTLAEIAKRELDGRFPKGRSLRVRFAMH--------------AELYVVNLMQGASNDLL 48 (275)
T ss_pred ccHHHHHHHhcCCCCCCCCceEEEeecc--------------ceEEEEecchhhhhHHH
Confidence 3457777788999999999999999853 46777777776665444
No 196
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=21.30 E-value=3.2e+02 Score=23.54 Aligned_cols=64 Identities=14% Similarity=0.209 Sum_probs=41.0
Q ss_pred CCcEEEEeC-CCCCCCHHHHHHHhc----cCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhC
Q psy1078 32 DSAWIFVGG-LPYDLSEGDVICIFS----QYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLN 96 (199)
Q Consensus 32 ~~~~l~V~n-Lp~~~te~~L~~~F~----~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~ln 96 (199)
++..+.++. .+....-.+|..+|. .+|-|..+.+-..+. ...+.+.++.|.+.++|..|+..+.
T Consensus 130 ~G~~~~~~~~~~~~~~g~dl~~l~~Gs~GtlGiit~~~lkl~p~-p~~~~~~~~~f~~~~~~~~~~~~~~ 198 (413)
T TIGR00387 130 DGEILRIGGKTAKDVAGYDLTGLFVGSEGTLGIVTEATLKLLPK-PENIVVALAFFDSIEKAMQAVYDII 198 (413)
T ss_pred CCCEEEeCCcccCCCCCCChhhhcccCCccceEEEEEEEEeecC-CCccEEEEEECCCHHHHHHHHHHHH
Confidence 444455543 233344456777764 377788887765542 4445667889999999999886653
No 197
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=21.01 E-value=1.7e+02 Score=26.34 Aligned_cols=51 Identities=20% Similarity=0.336 Sum_probs=39.1
Q ss_pred CCcEEEEeCCCCCCCH-HHHHHHhccCCCeEEEEEeecCCCCCcceEEE-EEec
Q psy1078 32 DSAWIFVGGLPYDLSE-GDVICIFSQYGEIVNLNLVRDKITGKSKGFCF-ICYE 83 (199)
Q Consensus 32 ~~~~l~V~nLp~~~te-~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~af-V~f~ 83 (199)
...-||.|-+|-+..+ ++|+..+.+. .+.+..+...+++....|||| +-|-
T Consensus 296 ~~P~Vf~GlyPid~~dye~LrdAleKL-~LNDasl~~E~EtS~ALGfGfRcGFL 348 (603)
T COG0481 296 VKPMVFAGLYPVDSDDYEDLRDALEKL-QLNDASLTYEPETSQALGFGFRCGFL 348 (603)
T ss_pred CCceEEEeecccChhHHHHHHHHHHhc-ccccceeeeccccchhccCceeehhh
Confidence 4567999999999877 8999998877 466777777777877788877 3443
No 198
>PF13689 DUF4154: Domain of unknown function (DUF4154)
Probab=20.37 E-value=1.7e+02 Score=21.09 Aligned_cols=48 Identities=21% Similarity=0.227 Sum_probs=32.8
Q ss_pred eEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEEeec
Q psy1078 60 IVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHVN 111 (199)
Q Consensus 60 i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~a~ 111 (199)
+..+.|+... ....+-++.+.+...+ .++..|.+..+.|++|.|....
T Consensus 14 ~~f~~WP~~~---~~~~~~icv~g~~~~~-~~L~~l~~~~~~~~~i~v~~~~ 61 (145)
T PF13689_consen 14 AKFIEWPDSA---PSSPFRICVLGDDPFA-EALSTLAGKQVGGRPIRVRRLS 61 (145)
T ss_pred HhhccCCCCC---CCCCeEEEEECChHHH-HHHHHhhhcccCCCcEEEEECC
Confidence 3445565441 3345667777666544 5788889999999999998754
No 199
>PF04026 SpoVG: SpoVG; InterPro: IPR007170 This is a stage V sporulation protein G. It is essential for sporulation and specific to stage V sporulation in Bacillus megaterium and Bacillus subtilis []. In B. subtilis, expression decreases after 30-60 minutes of cold shock [].; GO: 0030435 sporulation resulting in formation of a cellular spore; PDB: 2IA9_F 2I9X_B 2I9Z_A.
Probab=20.30 E-value=2.4e+02 Score=18.64 Aligned_cols=46 Identities=20% Similarity=0.354 Sum_probs=28.4
Q ss_pred CeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeC--CeeEEEEeec
Q psy1078 59 EIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVL--SRTIRVDHVN 111 (199)
Q Consensus 59 ~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~--g~~l~v~~a~ 111 (199)
.|.+++|-.-...|+.++||=|+|.+. ..++|..|- ..-|.|.++.
T Consensus 2 ~itdVri~~~~~~~~lka~asV~~dd~-------f~I~~ikVieg~~GlFVaMPs 49 (84)
T PF04026_consen 2 KITDVRIRKIEPEGKLKAFASVTFDDC-------FVIHDIKVIEGEKGLFVAMPS 49 (84)
T ss_dssp -EEEEEEEETTSSSSEEEEEEEEETTT-------EEEEEEEEEEETTEEEEE--E
T ss_pred ccEEEEEEEecCCCCEEEEEEEEECCE-------EEEEeEEEEECCCCcEEECCC
Confidence 367777766554589999999999871 245554442 3337777754
No 200
>PRK11901 hypothetical protein; Reviewed
Probab=20.16 E-value=4.4e+02 Score=22.29 Aligned_cols=63 Identities=8% Similarity=0.048 Sum_probs=39.7
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEE--EEEecCHHHHHHHHHhhCC
Q psy1078 30 YKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFC--FICYEDQRSTVLSVDNLNG 97 (199)
Q Consensus 30 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~a--fV~f~~~~~a~~Ai~~lng 97 (199)
.....+|-|..+ ..++.|..|...++ +..+.|.....+|+. .|. |-.|.+.++|..|+..|-.
T Consensus 242 p~~~YTLQL~Aa---s~~~~L~~f~~~~~-L~~~~VYqT~RnGkp-WYVVvyG~Y~Sr~eAk~Ai~sLPa 306 (327)
T PRK11901 242 PASHYTLQLSSA---SRSDTLNAYAKKQN-LSHYHVYETKRDGKP-WYVLVSGNYASSAEAKRAIATLPA 306 (327)
T ss_pred CCCCeEEEeecC---CCHHHHHHHHHHcC-cCceEEEEEEECCce-EEEEEecCcCCHHHHHHHHHhCCH
Confidence 344456666554 45777888887775 344444433323433 444 3479999999999988765
Done!