Query psy1078
Match_columns 199
No_of_seqs 279 out of 1969
Neff 8.8
Searched_HMMs 29240
Date Fri Aug 16 18:19:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1078.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1078hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fxv_A ELAV-like protein 1; RN 99.9 1.7E-24 5.8E-29 149.7 12.3 83 30-112 16-98 (99)
2 4f25_A Polyadenylate-binding p 99.9 5.7E-24 1.9E-28 150.8 11.7 109 32-142 4-113 (115)
3 3s8s_A Histone-lysine N-methyl 99.9 1E-22 3.4E-27 143.4 12.5 82 31-112 4-85 (110)
4 2lxi_A RNA-binding protein 10; 99.9 1.9E-23 6.6E-28 142.1 7.3 81 33-113 1-83 (91)
5 3md1_A Nuclear and cytoplasmic 99.9 3.1E-22 1E-26 133.3 12.5 80 33-112 1-80 (83)
6 2dgo_A Cytotoxic granule-assoc 99.9 7.4E-22 2.5E-26 139.6 14.8 89 27-115 9-97 (115)
7 2cq0_A Eukaryotic translation 99.9 5.4E-22 1.8E-26 137.6 13.7 87 28-114 10-96 (103)
8 3bs9_A Nucleolysin TIA-1 isofo 99.9 3E-22 1E-26 134.6 12.0 83 30-112 3-85 (87)
9 2cqc_A Arginine/serine-rich sp 99.9 4E-22 1.4E-26 136.0 12.3 86 27-112 9-94 (95)
10 2lkz_A RNA-binding protein 5; 99.9 5.3E-23 1.8E-27 141.1 7.8 82 31-112 7-94 (95)
11 3mdf_A Peptidyl-prolyl CIS-tra 99.9 4E-22 1.4E-26 133.3 11.0 82 30-111 4-85 (85)
12 2la6_A RNA-binding protein FUS 99.9 6.6E-22 2.3E-26 136.3 11.7 85 27-111 7-99 (99)
13 2jrs_A RNA-binding protein 39; 99.9 6.5E-22 2.2E-26 138.7 11.7 91 22-112 15-105 (108)
14 2cpz_A CUG triplet repeat RNA- 99.9 9.9E-22 3.4E-26 139.0 12.8 86 29-114 21-106 (115)
15 1x5u_A Splicing factor 3B subu 99.9 7.3E-22 2.5E-26 137.3 11.7 87 28-114 10-96 (105)
16 2e5h_A Zinc finger CCHC-type a 99.9 8.3E-22 2.8E-26 134.3 11.8 84 28-111 11-94 (94)
17 2kn4_A Immunoglobulin G-bindin 99.9 9.2E-22 3.1E-26 146.5 13.0 114 2-115 22-152 (158)
18 1p27_B RNA-binding protein 8A; 99.9 5.7E-22 2E-26 138.1 11.1 85 30-114 20-104 (106)
19 1x4h_A RNA-binding protein 28; 99.9 1.2E-21 4E-26 137.6 12.7 87 28-114 10-102 (111)
20 2dnz_A Probable RNA-binding pr 99.9 1E-21 3.5E-26 134.1 12.0 85 30-114 2-86 (95)
21 1whw_A Hypothetical protein ri 99.9 9.4E-22 3.2E-26 135.3 11.9 85 30-114 5-89 (99)
22 2dnm_A SRP46 splicing factor; 99.9 6.9E-22 2.4E-26 137.1 11.2 87 29-115 9-95 (103)
23 2x1f_A MRNA 3'-END-processing 99.9 8.8E-22 3E-26 134.9 11.3 82 32-113 1-82 (96)
24 2cqb_A Peptidyl-prolyl CIS-tra 99.9 8E-22 2.7E-26 136.4 11.1 86 29-114 8-93 (102)
25 3p5t_L Cleavage and polyadenyl 99.9 9.8E-23 3.4E-27 138.2 6.2 81 34-114 2-84 (90)
26 2dnh_A Bruno-like 5, RNA bindi 99.9 2.5E-21 8.4E-26 134.6 13.4 85 29-114 11-98 (105)
27 1x5t_A Splicing factor 3B subu 99.9 8.3E-22 2.8E-26 134.8 10.8 84 31-114 3-87 (96)
28 2cph_A RNA binding motif prote 99.9 1.3E-21 4.5E-26 136.4 12.0 87 28-114 10-98 (107)
29 2d9p_A Polyadenylate-binding p 99.9 1.9E-21 6.4E-26 134.9 12.7 86 28-115 10-95 (103)
30 2dng_A Eukaryotic translation 99.9 3.4E-21 1.2E-25 133.6 13.9 84 29-114 11-94 (103)
31 2do4_A Squamous cell carcinoma 99.9 2.5E-21 8.6E-26 133.5 13.2 84 29-113 13-96 (100)
32 2dgs_A DAZ-associated protein 99.9 2E-21 6.7E-26 133.8 12.5 84 30-114 7-90 (99)
33 2cpf_A RNA binding motif prote 99.9 1.3E-21 4.4E-26 134.4 11.4 85 31-115 3-90 (98)
34 1oo0_B CG8781-PA, drosophila Y 99.9 1.2E-21 4E-26 137.5 11.2 86 29-114 22-107 (110)
35 1x5s_A Cold-inducible RNA-bind 99.9 1.2E-21 3.9E-26 135.6 10.9 86 29-114 8-93 (102)
36 3ns6_A Eukaryotic translation 99.9 1.6E-22 5.5E-27 139.8 6.3 82 31-112 4-92 (100)
37 2div_A TRNA selenocysteine ass 99.9 1.2E-21 3.9E-26 134.9 10.4 85 30-114 6-95 (99)
38 4a8x_A RNA-binding protein wit 99.9 1.7E-21 5.8E-26 131.0 10.8 83 31-113 2-85 (88)
39 3ucg_A Polyadenylate-binding p 99.9 2.3E-21 7.9E-26 130.7 11.5 81 32-113 5-85 (89)
40 2cpe_A RNA-binding protein EWS 99.9 2.7E-21 9.1E-26 136.3 12.2 87 28-114 10-104 (113)
41 2dgp_A Bruno-like 4, RNA bindi 99.9 1.5E-21 5.2E-26 135.9 10.8 88 27-114 7-97 (106)
42 3s7r_A Heterogeneous nuclear r 99.9 3.8E-21 1.3E-25 129.2 12.1 81 29-110 7-87 (87)
43 2cq3_A RNA-binding protein 9; 99.9 9.5E-21 3.2E-25 131.3 14.4 85 28-114 10-94 (103)
44 2cqi_A Nucleolysin TIAR; RNA r 99.9 7.5E-21 2.6E-25 131.8 13.7 85 28-114 10-94 (103)
45 2khc_A Testis-specific RNP-typ 99.9 2.2E-21 7.6E-26 137.7 11.0 83 29-111 36-118 (118)
46 2lea_A Serine/arginine-rich sp 99.9 3.7E-22 1.3E-26 145.4 7.2 112 5-116 16-130 (135)
47 3md3_A Nuclear and cytoplasmic 99.9 8.1E-21 2.8E-25 141.2 14.5 110 2-111 50-165 (166)
48 3ulh_A THO complex subunit 4; 99.9 5.1E-21 1.7E-25 133.5 12.5 82 29-111 25-106 (107)
49 2ywk_A Putative RNA-binding pr 99.9 3.6E-21 1.2E-25 131.4 11.4 83 29-112 12-94 (95)
50 1wi8_A EIF-4B, eukaryotic tran 99.9 5.1E-21 1.7E-25 132.9 12.3 84 29-114 11-95 (104)
51 3n9u_C Cleavage and polyadenyl 99.9 2.2E-21 7.4E-26 144.7 11.1 81 32-112 54-136 (156)
52 2cqd_A RNA-binding region cont 99.9 7.2E-21 2.5E-25 134.7 12.9 86 29-115 13-98 (116)
53 1s79_A Lupus LA protein; RRM, 99.9 1.2E-21 4.2E-26 136.2 8.5 81 30-112 8-88 (103)
54 2do0_A HnRNP M, heterogeneous 99.9 1.6E-20 5.5E-25 132.4 14.3 84 29-113 11-94 (114)
55 2dgx_A KIAA0430 protein; RRM d 99.9 5E-21 1.7E-25 131.2 11.3 82 29-113 5-90 (96)
56 2cqp_A RNA-binding protein 12; 99.9 3E-21 1E-25 132.6 10.0 83 30-112 12-94 (98)
57 3ex7_B RNA-binding protein 8A; 99.9 2.8E-21 9.4E-26 138.7 10.2 87 29-115 18-104 (126)
58 2kxn_B Transformer-2 protein h 99.9 2.1E-21 7.2E-26 140.3 9.5 86 29-114 42-127 (129)
59 1u6f_A Tcubp1, RNA-binding pro 99.9 4.3E-21 1.5E-25 140.0 11.1 86 29-114 38-123 (139)
60 2fy1_A RNA-binding motif prote 99.9 4.7E-21 1.6E-25 136.0 10.9 84 30-114 4-87 (116)
61 4f02_A Polyadenylate-binding p 99.9 2.4E-21 8.3E-26 151.0 10.2 109 30-143 12-120 (213)
62 2dh8_A DAZ-associated protein 99.9 5E-21 1.7E-25 133.2 10.7 85 29-114 12-96 (105)
63 2cqg_A TDP-43, TAR DNA-binding 99.9 2.5E-20 8.4E-25 129.2 14.1 85 28-114 10-94 (103)
64 1h2v_Z 20 kDa nuclear CAP bind 99.8 1.6E-20 5.3E-25 139.7 13.8 88 28-115 34-121 (156)
65 2dhg_A TRNA selenocysteine ass 99.8 4.3E-21 1.5E-25 133.2 9.8 85 29-114 5-91 (104)
66 2ek1_A RNA-binding protein 12; 99.8 2.6E-21 8.8E-26 132.1 8.5 82 30-111 12-93 (95)
67 2dgv_A HnRNP M, heterogeneous 99.8 8.7E-21 3E-25 128.7 11.0 83 30-114 5-87 (92)
68 2a3j_A U1 small nuclear ribonu 99.8 3.9E-21 1.3E-25 138.5 9.8 97 13-112 9-109 (127)
69 2g4b_A Splicing factor U2AF 65 99.8 1.1E-20 3.9E-25 141.6 12.6 108 2-110 60-171 (172)
70 1sjq_A Polypyrimidine tract-bi 99.8 4.4E-21 1.5E-25 133.4 9.4 80 29-114 12-93 (105)
71 2rs2_A Musashi-1, RNA-binding 99.8 8.5E-21 2.9E-25 133.2 11.0 85 28-113 20-104 (109)
72 1x4e_A RNA binding motif, sing 99.8 7.9E-22 2.7E-26 132.0 5.3 82 30-111 2-83 (85)
73 1rk8_A CG8781-PA, CG8781-PA pr 99.8 1.3E-20 4.4E-25 141.5 12.3 84 31-114 70-153 (165)
74 2kt5_A RNA and export factor-b 99.8 2.2E-20 7.5E-25 133.8 12.8 84 30-114 32-115 (124)
75 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 1.3E-20 4.5E-25 137.2 11.7 82 29-110 59-140 (140)
76 1p1t_A Cleavage stimulation fa 99.8 4.2E-21 1.4E-25 133.2 8.4 81 32-112 7-87 (104)
77 2mss_A Protein (musashi1); RNA 99.8 1.8E-21 6E-26 127.3 6.1 75 35-110 1-75 (75)
78 2dgw_A Probable RNA-binding pr 99.8 3.1E-20 1.1E-24 125.8 12.6 82 29-113 6-87 (91)
79 2dis_A Unnamed protein product 99.8 7.4E-21 2.5E-25 133.1 9.7 86 30-115 5-94 (109)
80 2cq4_A RNA binding motif prote 99.8 6.1E-21 2.1E-25 134.7 9.2 80 32-112 24-103 (114)
81 1x4d_A Matrin 3; structural ge 99.8 8.8E-21 3E-25 131.5 9.8 80 29-114 11-93 (102)
82 2jwn_A Embryonic polyadenylate 99.8 1.7E-20 5.9E-25 134.2 11.6 82 32-114 35-116 (124)
83 2yh0_A Splicing factor U2AF 65 99.8 2.1E-20 7.1E-25 143.2 12.7 111 2-113 60-194 (198)
84 1fxl_A Paraneoplastic encephal 99.8 2E-20 6.7E-25 139.2 12.1 104 33-143 2-105 (167)
85 2cpi_A CCR4-NOT transcription 99.8 1.4E-20 4.9E-25 132.3 10.6 84 30-113 12-101 (111)
86 2i2y_A Fusion protein consists 99.8 5.4E-21 1.8E-25 141.3 8.7 106 2-112 22-147 (150)
87 2nlw_A Eukaryotic translation 99.8 9.4E-21 3.2E-25 132.0 9.5 82 30-113 12-100 (105)
88 1b7f_A Protein (SXL-lethal pro 99.8 1.3E-20 4.5E-25 140.6 10.8 105 32-143 2-106 (168)
89 1l3k_A Heterogeneous nuclear r 99.8 1.4E-20 4.7E-25 144.0 11.1 113 29-143 9-121 (196)
90 2wbr_A GW182, gawky, LD47780P; 99.8 1.1E-20 3.7E-25 126.4 8.9 74 32-111 6-79 (89)
91 2m2b_A RNA-binding protein 10; 99.8 3.1E-21 1.1E-25 139.6 6.8 84 30-114 20-109 (131)
92 1x4a_A Splicing factor, argini 99.8 4.9E-20 1.7E-24 129.0 12.7 82 30-114 19-100 (109)
93 2j76_E EIF-4B, EIF4B, eukaryot 99.8 3.4E-21 1.1E-25 133.1 6.6 82 29-112 15-97 (100)
94 2cq1_A PTB-like protein L; RRM 99.8 6.8E-20 2.3E-24 126.9 13.0 80 29-114 11-92 (101)
95 1uaw_A Mouse-musashi-1; RNP-ty 99.8 3.3E-21 1.1E-25 126.4 6.1 76 34-110 1-76 (77)
96 1x4b_A Heterogeneous nuclear r 99.8 2.6E-20 8.9E-25 131.8 11.1 83 31-114 25-107 (116)
97 2cpy_A RNA-binding protein 12; 99.8 1.4E-20 4.7E-25 133.1 9.7 83 28-112 10-93 (114)
98 2err_A Ataxin-2-binding protei 99.8 2.1E-20 7.2E-25 131.1 10.4 82 29-112 25-106 (109)
99 2hvz_A Splicing factor, argini 99.8 7.7E-21 2.6E-25 131.3 8.1 97 34-135 1-100 (101)
100 2qfj_A FBP-interacting repress 99.8 6.2E-20 2.1E-24 142.3 14.0 113 2-114 79-206 (216)
101 2ki2_A SS-DNA binding protein 99.8 1.8E-21 6.2E-26 131.6 4.6 79 34-113 2-80 (90)
102 2fc9_A NCL protein; structure 99.8 5.9E-20 2E-24 126.8 12.3 82 29-114 11-92 (101)
103 3r27_A HnRNP L, heterogeneous 99.8 2.4E-20 8.4E-25 128.5 10.2 77 30-112 18-96 (100)
104 1x5o_A RNA binding motif, sing 99.8 4.2E-20 1.4E-24 130.3 11.2 83 29-112 21-111 (114)
105 2cpx_A Hypothetical protein FL 99.8 5.2E-21 1.8E-25 135.1 6.4 86 29-114 21-106 (115)
106 4f02_A Polyadenylate-binding p 99.8 5.4E-20 1.8E-24 143.4 12.8 109 2-112 66-180 (213)
107 3smz_A Protein raver-1, ribonu 99.8 4.8E-20 1.6E-24 149.1 12.9 135 2-143 66-202 (284)
108 1wg5_A Heterogeneous nuclear r 99.8 4.7E-20 1.6E-24 128.2 10.8 82 29-112 11-93 (104)
109 1wex_A Hypothetical protein (r 99.8 5.8E-20 2E-24 127.9 11.0 80 29-114 11-92 (104)
110 2db1_A Heterogeneous nuclear r 99.8 4.3E-20 1.5E-24 131.4 10.5 82 29-112 13-97 (118)
111 1b7f_A Protein (SXL-lethal pro 99.8 8.4E-20 2.9E-24 136.1 12.5 109 2-110 54-168 (168)
112 2cpj_A Non-POU domain-containi 99.8 5.1E-20 1.8E-24 126.7 10.4 81 27-113 9-89 (99)
113 2ad9_A Polypyrimidine tract-bi 99.8 4.5E-20 1.5E-24 131.2 10.3 80 29-114 27-108 (119)
114 1wez_A HnRNP H', FTP-3, hetero 99.8 7.3E-20 2.5E-24 127.0 11.1 83 28-113 10-92 (102)
115 2jvr_A Nucleolar protein 3; RN 99.8 3E-20 1E-24 130.8 9.1 84 25-112 20-104 (111)
116 1fj7_A Nucleolin RBD1, protein 99.8 3.6E-21 1.2E-25 133.0 4.0 81 31-113 15-95 (101)
117 3md3_A Nuclear and cytoplasmic 99.8 5.3E-20 1.8E-24 136.7 10.6 104 34-143 1-104 (166)
118 1fxl_A Paraneoplastic encephal 99.8 8.5E-20 2.9E-24 135.7 11.7 109 2-110 53-167 (167)
119 2fc8_A NCL protein; structure 99.8 1.5E-19 5.1E-24 124.9 12.0 84 28-114 10-93 (102)
120 2ytc_A PRE-mRNA-splicing facto 99.8 1E-19 3.5E-24 121.6 10.7 77 29-111 8-85 (85)
121 1x4c_A Splicing factor, argini 99.8 1.9E-19 6.5E-24 125.9 12.5 78 30-114 12-94 (108)
122 2krb_A Eukaryotic translation 99.8 1.3E-20 4.4E-25 125.1 6.1 73 33-107 1-80 (81)
123 2dnq_A RNA-binding protein 4B; 99.8 1.5E-19 5E-24 122.3 11.3 77 30-114 5-81 (90)
124 1wel_A RNA-binding protein 12; 99.8 2.2E-20 7.4E-25 133.9 7.6 82 30-112 22-103 (124)
125 3lqv_A PRE-mRNA branch site pr 99.8 5.5E-20 1.9E-24 129.9 9.6 80 30-112 5-84 (115)
126 1x4g_A Nucleolysin TIAR; struc 99.8 1.5E-19 5.1E-24 126.6 11.4 79 30-114 22-100 (109)
127 3q2s_C Cleavage and polyadenyl 99.8 4.1E-20 1.4E-24 145.9 9.4 81 32-112 67-149 (229)
128 2hgl_A HNRPF protein, heteroge 99.8 4.8E-20 1.6E-24 134.3 8.8 83 28-112 39-124 (136)
129 2dgt_A RNA-binding protein 30; 99.8 3.1E-19 1E-23 121.2 12.1 78 29-114 6-83 (92)
130 3nmr_A Cugbp ELAV-like family 99.8 1.4E-19 4.6E-24 135.7 11.3 109 2-111 56-175 (175)
131 2cpd_A Apobec-1 stimulating pr 99.8 5.4E-19 1.9E-23 121.5 13.4 78 29-114 11-90 (99)
132 1nu4_A U1A RNA binding domain; 99.8 6.4E-20 2.2E-24 125.6 8.6 81 30-113 5-89 (97)
133 2xnq_A Nuclear polyadenylated 99.8 2.4E-19 8.2E-24 123.1 11.5 78 27-112 16-94 (97)
134 2cjk_A Nuclear polyadenylated 99.8 1.5E-20 5.1E-25 140.3 5.6 109 2-112 54-165 (167)
135 1why_A Hypothetical protein ri 99.8 1.5E-19 5.1E-24 123.9 10.1 78 30-113 14-93 (97)
136 2dnp_A RNA-binding protein 14; 99.8 2E-19 7E-24 121.6 10.7 78 29-114 5-82 (90)
137 1iqt_A AUF1, heterogeneous nuc 99.8 1.4E-20 4.7E-25 122.9 4.6 75 35-110 1-75 (75)
138 2e5j_A Methenyltetrahydrofolat 99.8 1.5E-19 5E-24 124.0 10.0 80 29-113 15-94 (97)
139 2la4_A Nuclear and cytoplasmic 99.8 9.6E-20 3.3E-24 125.7 9.0 77 30-112 24-100 (101)
140 2xs2_A Deleted in azoospermia- 99.8 6.2E-20 2.1E-24 126.9 7.8 80 31-113 7-86 (102)
141 2jvo_A Nucleolar protein 3; nu 99.8 2.1E-19 7.2E-24 125.9 10.4 77 29-113 27-103 (108)
142 2dnn_A RNA-binding protein 12; 99.8 1.5E-19 5E-24 126.9 9.2 78 31-111 14-91 (109)
143 3egn_A RNA-binding protein 40; 99.8 2.4E-20 8.1E-25 136.8 5.1 83 29-114 41-131 (143)
144 2j8a_A Histone-lysine N-methyl 99.8 1.4E-19 4.8E-24 128.9 8.9 79 34-112 3-95 (136)
145 1x4f_A Matrin 3; structural ge 99.8 1.1E-19 3.8E-24 127.8 8.2 79 30-114 22-103 (112)
146 2dgu_A Heterogeneous nuclear r 99.8 6.2E-19 2.1E-23 122.2 11.6 77 30-114 8-84 (103)
147 3pgw_S U1-70K; protein-RNA com 99.8 4.9E-19 1.7E-23 151.8 13.4 83 31-113 100-182 (437)
148 2lmi_A GRSF-1, G-rich sequence 99.8 4.2E-20 1.4E-24 129.1 5.5 82 29-112 7-91 (107)
149 2kvi_A Nuclear polyadenylated 99.8 1.8E-19 6.1E-24 123.4 8.6 78 29-114 6-84 (96)
150 3nmr_A Cugbp ELAV-like family 99.8 2.7E-19 9.1E-24 134.1 10.3 107 31-143 1-112 (175)
151 1wf1_A RNA-binding protein RAL 99.8 5.6E-19 1.9E-23 123.8 11.3 78 29-114 23-101 (110)
152 1fjc_A Nucleolin RBD2, protein 99.8 1.8E-19 6E-24 123.2 8.5 80 29-113 12-91 (96)
153 2lcw_A RNA-binding protein FUS 99.7 3.7E-21 1.3E-25 136.3 0.0 85 29-113 3-95 (116)
154 1whx_A Hypothetical protein ri 99.8 3E-19 1E-23 125.7 9.5 76 31-112 8-83 (111)
155 2e44_A Insulin-like growth fac 99.8 2.9E-19 1E-23 122.1 9.2 80 30-113 12-92 (96)
156 1fje_B Nucleolin RBD12, protei 99.8 6.2E-19 2.1E-23 132.6 11.8 105 2-112 63-173 (175)
157 2ghp_A U4/U6 snRNA-associated 99.8 1.5E-19 5.1E-24 146.8 9.0 136 2-143 90-228 (292)
158 1l3k_A Heterogeneous nuclear r 99.8 6.1E-19 2.1E-23 134.7 11.9 111 2-114 64-184 (196)
159 3tyt_A Heterogeneous nuclear r 99.8 3.9E-19 1.3E-23 138.0 10.7 77 31-112 2-79 (205)
160 1x5p_A Negative elongation fac 99.8 2.7E-18 9.2E-23 117.6 13.3 79 28-114 10-88 (97)
161 2f3j_A RNA and export factor b 99.8 3.5E-19 1.2E-23 135.3 9.5 81 31-112 86-166 (177)
162 2cjk_A Nuclear polyadenylated 99.8 7.8E-20 2.7E-24 136.3 5.7 103 32-143 2-104 (167)
163 2e5g_A U6 snRNA-specific termi 99.8 1.3E-18 4.4E-23 118.6 10.9 78 30-113 5-82 (94)
164 2cqh_A IGF-II mRNA-binding pro 99.8 5.7E-19 2E-23 120.0 8.9 77 30-113 5-83 (93)
165 2qfj_A FBP-interacting repress 99.8 1.5E-19 5.1E-24 140.2 5.8 113 31-143 26-142 (216)
166 2hgm_A HNRPF protein, heteroge 99.8 5.8E-19 2E-23 126.8 8.3 81 29-112 38-120 (126)
167 3smz_A Protein raver-1, ribonu 99.8 3.5E-18 1.2E-22 138.1 13.8 111 2-113 146-264 (284)
168 1wg1_A KIAA1579 protein, homol 99.8 1.1E-18 3.7E-23 117.6 8.9 75 31-112 3-77 (88)
169 2ghp_A U4/U6 snRNA-associated 99.8 1.4E-18 4.7E-23 141.1 11.0 110 2-112 168-290 (292)
170 2dha_A FLJ20171 protein; RRM d 99.8 4.8E-19 1.6E-23 126.8 7.3 81 30-112 20-104 (123)
171 2cq2_A Hypothetical protein LO 99.8 1.2E-18 4.1E-23 122.8 9.0 76 31-112 23-105 (114)
172 2hgn_A Heterogeneous nuclear r 99.8 1.7E-19 5.7E-24 131.9 3.7 83 27-112 40-122 (139)
173 2e5i_A Heterogeneous nuclear r 99.8 5.9E-18 2E-22 121.2 11.6 75 34-114 26-103 (124)
174 3zzy_A Polypyrimidine tract-bi 99.8 8.8E-18 3E-22 120.9 12.5 79 31-114 26-107 (130)
175 1fje_B Nucleolin RBD12, protei 99.8 2.8E-19 9.5E-24 134.5 3.6 108 29-143 9-116 (175)
176 3d2w_A TAR DNA-binding protein 99.8 5.1E-18 1.7E-22 114.7 9.4 76 29-113 7-84 (89)
177 2adc_A Polypyrimidine tract-bi 99.8 4.8E-18 1.7E-22 133.7 10.7 80 29-113 30-110 (229)
178 2diu_A KIAA0430 protein; struc 99.8 3.9E-18 1.3E-22 115.1 8.7 74 31-114 6-85 (96)
179 3pgw_A U1-A; protein-RNA compl 99.7 8.4E-18 2.9E-22 135.8 12.1 82 29-113 5-90 (282)
180 2dnl_A Cytoplasmic polyadenyla 99.7 2.7E-18 9.3E-23 121.2 7.8 79 30-111 5-86 (114)
181 2hzc_A Splicing factor U2AF 65 99.7 4.9E-18 1.7E-22 113.7 8.6 72 31-109 4-86 (87)
182 2voo_A Lupus LA protein; RNA-b 99.7 1.2E-17 4.2E-22 128.4 11.5 80 33-114 109-188 (193)
183 3beg_B Splicing factor, argini 99.7 3.4E-18 1.2E-22 120.9 7.3 75 31-112 14-93 (115)
184 1sjr_A Polypyrimidine tract-bi 99.7 1.4E-17 4.8E-22 124.2 10.9 79 32-114 45-125 (164)
185 3sde_A Paraspeckle component 1 99.7 9.1E-18 3.1E-22 134.6 9.9 96 29-143 18-113 (261)
186 2g4b_A Splicing factor U2AF 65 99.7 1E-17 3.5E-22 125.4 9.5 99 31-143 2-111 (172)
187 2pe8_A Splicing factor 45; RRM 99.7 3.9E-17 1.3E-21 113.7 11.7 82 31-112 6-93 (105)
188 1qm9_A Polypyrimidine tract-bi 99.7 1.1E-17 3.9E-22 128.2 9.9 77 31-112 118-196 (198)
189 3pgw_A U1-A; protein-RNA compl 99.7 1.8E-17 6.1E-22 133.9 11.5 75 32-111 206-281 (282)
190 2bz2_A Negative elongation fac 99.7 1.4E-17 4.6E-22 119.0 9.3 77 29-113 35-111 (121)
191 3sde_A Paraspeckle component 1 99.7 2.5E-17 8.6E-22 132.0 11.7 108 2-113 67-179 (261)
192 3tyt_A Heterogeneous nuclear r 99.7 1.2E-17 4.1E-22 129.6 9.4 77 32-110 122-204 (205)
193 1qm9_A Polypyrimidine tract-bi 99.7 6.3E-18 2.2E-22 129.7 7.6 77 32-113 2-79 (198)
194 2adc_A Polypyrimidine tract-bi 99.7 3E-17 1E-21 129.1 11.5 76 32-112 150-227 (229)
195 1wf0_A TDP-43, TAR DNA-binding 99.7 1E-17 3.6E-22 112.6 7.3 77 31-114 3-79 (88)
196 2yh0_A Splicing factor U2AF 65 99.7 3.1E-17 1E-21 125.4 9.8 105 32-143 3-131 (198)
197 3u1l_A PRE-mRNA-splicing facto 99.7 1.7E-17 6E-22 131.2 7.9 79 30-114 131-230 (240)
198 2dit_A HIV TAT specific factor 99.7 6E-16 2E-20 108.8 12.4 83 27-113 9-102 (112)
199 1jmt_A Splicing factor U2AF 35 99.6 1.6E-16 5.3E-21 110.5 4.6 73 37-110 19-103 (104)
200 3v4m_A Splicing factor U2AF 65 99.6 1.3E-15 4.4E-20 106.0 8.9 82 31-112 3-96 (105)
201 3ue2_A Poly(U)-binding-splicin 99.6 3.8E-15 1.3E-19 105.7 10.0 80 32-111 19-107 (118)
202 2d9o_A DNAJ (HSP40) homolog, s 99.5 1.1E-13 3.7E-18 95.3 11.0 64 43-113 27-90 (100)
203 3tht_A Alkylated DNA repair pr 99.5 3.2E-14 1.1E-18 118.0 8.9 76 30-111 15-97 (345)
204 3s6e_A RNA-binding protein 39; 99.5 2.7E-13 9.2E-18 95.5 9.9 78 30-111 4-91 (114)
205 2dnr_A Synaptojanin-1; RRM dom 99.3 4.3E-12 1.5E-16 84.8 8.5 76 30-114 4-87 (91)
206 1owx_A Lupus LA protein, SS-B, 99.3 3.3E-12 1.1E-16 90.5 8.4 76 29-110 14-93 (121)
207 1ufw_A Synaptojanin 2; RNP dom 99.2 4.9E-11 1.7E-15 80.1 6.5 74 29-111 11-93 (95)
208 3dxb_A Thioredoxin N-terminall 99.1 1.5E-10 5.2E-15 90.2 8.0 67 45-111 141-211 (222)
209 2l9w_A U4/U6 snRNA-associated- 98.8 5.7E-08 1.9E-12 66.6 8.9 74 31-110 19-97 (117)
210 1wey_A Calcipressin 1; structu 98.2 5.9E-06 2E-10 56.3 8.2 74 33-112 5-83 (104)
211 2dhx_A Poly (ADP-ribose) polym 98.1 7.7E-05 2.6E-09 50.6 10.5 92 31-142 6-102 (104)
212 1whv_A Poly(A)-specific ribonu 97.9 6E-05 2E-09 50.5 7.2 57 30-95 13-69 (100)
213 2kn4_A Immunoglobulin G-bindin 97.8 2.2E-05 7.6E-10 57.3 4.6 79 62-143 2-87 (158)
214 2i2y_A Fusion protein consists 97.8 2.2E-05 7.5E-10 57.0 4.2 71 72-143 10-90 (150)
215 3ctr_A Poly(A)-specific ribonu 97.7 4.5E-05 1.5E-09 51.3 5.1 55 33-96 6-60 (101)
216 1uw4_A UPF3X; nonsense mediate 97.7 0.00025 8.5E-09 47.2 8.6 68 34-101 2-71 (91)
217 1wwh_A Nucleoporin 35, nucleop 97.6 0.00035 1.2E-08 48.7 8.7 73 31-111 22-95 (119)
218 2l08_A Regulator of nonsense t 96.8 0.003 1E-07 42.4 5.8 71 31-101 7-79 (97)
219 3p3d_A Nucleoporin 53; structu 96.7 0.0024 8.2E-08 45.1 5.1 77 33-111 7-97 (132)
220 3pq1_A Poly(A) RNA polymerase; 96.3 0.0024 8.2E-08 54.7 3.6 55 33-93 53-107 (464)
221 4f25_A Polyadenylate-binding p 95.7 0.0037 1.3E-07 43.0 1.6 48 2-49 54-113 (115)
222 3d45_A Poly(A)-specific ribonu 93.3 0.27 9.3E-06 42.5 7.9 57 32-97 439-495 (507)
223 3pgw_S U1-70K; protein-RNA com 89.4 0.013 4.3E-07 49.9 -4.5 42 50-91 9-57 (437)
224 3lqv_A PRE-mRNA branch site pr 86.7 0.057 1.9E-06 36.6 -1.8 53 2-59 56-109 (115)
225 2hvz_A Splicing factor, argini 86.6 0.22 7.7E-06 32.6 1.2 41 2-42 46-100 (101)
226 2lea_A Serine/arginine-rich sp 84.7 0.22 7.5E-06 34.9 0.4 61 75-143 4-64 (135)
227 2g0c_A ATP-dependent RNA helic 73.3 9 0.00031 23.5 5.4 67 35-110 2-74 (76)
228 4e8u_A Putative uncharacterize 65.2 20 0.00068 26.2 6.3 55 35-92 14-80 (172)
229 3fut_A Dimethyladenosine trans 54.3 20 0.0007 28.0 5.2 33 33-66 110-142 (271)
230 1rk8_A CG8781-PA, CG8781-PA pr 47.4 3.4 0.00012 29.5 -0.3 64 80-143 11-89 (165)
231 3ts2_A Protein LIN-28 homolog 46.1 3.2 0.00011 29.7 -0.7 28 48-83 2-29 (148)
232 4eyt_A Telomerase associated p 43.1 66 0.0022 20.8 9.1 59 29-95 8-66 (129)
233 3uzu_A Ribosomal RNA small sub 39.1 14 0.00047 29.1 1.9 35 33-67 114-148 (279)
234 4bby_A Alkyldihydroxyacetoneph 34.2 34 0.0012 30.3 3.9 56 39-95 349-408 (658)
235 1xn9_A 30S ribosomal protein S 32.4 1.1E+02 0.0036 20.2 5.2 48 43-91 28-80 (101)
236 1i4w_A Mitochondrial replicati 32.3 32 0.0011 28.1 3.2 23 34-56 143-165 (353)
237 1qyr_A KSGA, high level kasuga 28.8 44 0.0015 25.6 3.3 31 34-64 91-121 (252)
238 1ywx_A 30S ribosomal protein S 28.0 1.3E+02 0.0045 19.8 5.2 47 43-90 28-79 (102)
239 3tqs_A Ribosomal RNA small sub 27.0 19 0.00064 27.8 0.8 32 35-66 98-129 (255)
240 2v94_A RPS24, 30S ribosomal pr 26.9 1.3E+02 0.0046 19.9 5.0 47 43-90 37-88 (107)
241 3h7h_B Transcription elongatio 26.6 62 0.0021 21.4 3.3 35 59-98 40-74 (106)
242 3ftd_A Dimethyladenosine trans 25.3 40 0.0014 25.7 2.5 30 34-63 96-125 (249)
243 3mfb_A Uncharacterized protein 24.9 1.3E+02 0.0044 21.5 4.9 37 45-81 3-42 (157)
244 2i9x_A Putative septation prot 22.8 1.4E+02 0.0047 19.1 4.2 46 59-111 5-52 (87)
245 3ulj_A LIN28B, DNA-binding pro 22.4 58 0.002 20.9 2.4 8 75-82 20-27 (90)
246 2k5n_A Putative cold-shock pro 22.1 61 0.0021 19.9 2.4 10 75-84 14-23 (74)
247 3pm9_A Putative oxidoreductase 21.7 1.2E+02 0.0042 25.5 5.0 54 41-95 194-251 (476)
248 2kcm_A Cold shock domain famil 20.5 69 0.0024 19.7 2.4 10 75-84 12-21 (74)
249 1wvf_A 4-cresol dehydrogenase 20.4 83 0.0028 26.8 3.7 43 49-92 217-261 (520)
250 2ia9_A Putative septation prot 20.3 1.6E+02 0.0054 19.3 4.2 46 59-111 5-52 (100)
251 2i9z_A Putative septation prot 20.3 1.6E+02 0.0055 19.5 4.3 46 59-111 5-52 (105)
No 1
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.92 E-value=1.7e-24 Score=149.69 Aligned_cols=83 Identities=29% Similarity=0.586 Sum_probs=79.6
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEEe
Q psy1078 30 YKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDH 109 (199)
Q Consensus 30 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~ 109 (199)
...+++|||+|||+.+|+++|+.+|++||.|..|.|++++.+|.++|||||+|.+.++|.+|+..|||..|+|+.|+|.|
T Consensus 16 ~~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~ 95 (99)
T 4fxv_A 16 YFQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSY 95 (99)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 45678999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred ecC
Q psy1078 110 VND 112 (199)
Q Consensus 110 a~~ 112 (199)
|.|
T Consensus 96 AkP 98 (99)
T 4fxv_A 96 ARP 98 (99)
T ss_dssp CCB
T ss_pred eeC
Confidence 864
No 2
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.91 E-value=5.7e-24 Score=150.84 Aligned_cols=109 Identities=22% Similarity=0.387 Sum_probs=75.6
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEEeec
Q psy1078 32 DSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHVN 111 (199)
Q Consensus 32 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~a~ 111 (199)
.+.+|||+|||+.+++++|+.+|++||.|..|.|+++. +.++|||||+|.+.++|++||..|||..|+|+.|.|.++.
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 81 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESS
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 45689999999999999999999999999999999985 5689999999999999999999999999999999999997
Q ss_pred CCCCCCCC-CCChhhccceeeccCCCCCCCCC
Q psy1078 112 DYKPPKDN-KYTDEETKKLRTIGCAPGTEFGS 142 (199)
Q Consensus 112 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 142 (199)
+....... .........+|++++++.++++.
T Consensus 82 ~~~~~~~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 82 SRKEREAELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp CCCC----------------------------
T ss_pred CccccccccccccCCCCceEeCCCCCCccccc
Confidence 64432221 11223345689999998877653
No 3
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.89 E-value=1e-22 Score=143.40 Aligned_cols=82 Identities=17% Similarity=0.191 Sum_probs=78.8
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEEee
Q psy1078 31 KDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHV 110 (199)
Q Consensus 31 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~a 110 (199)
++.++|||+|||+.+++++|+.+|++||.|..|.|++++.+|+++|||||+|.+.++|++||..|||..|+|+.|.|.++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cC
Q psy1078 111 ND 112 (199)
Q Consensus 111 ~~ 112 (199)
..
T Consensus 84 ~~ 85 (110)
T 3s8s_A 84 IK 85 (110)
T ss_dssp ST
T ss_pred CC
Confidence 54
No 4
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.89 E-value=1.9e-23 Score=142.13 Aligned_cols=81 Identities=19% Similarity=0.380 Sum_probs=75.7
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCC-CeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhh-CCCEeCCeeEEEEee
Q psy1078 33 SAWIFVGGLPYDLSEGDVICIFSQYG-EIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL-NGVKVLSRTIRVDHV 110 (199)
Q Consensus 33 ~~~l~V~nLp~~~te~~L~~~F~~~G-~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l-ng~~i~g~~l~v~~a 110 (199)
+.+|||+|||+.+|+++|+.+|++|| .|..|.|++++.+|.++|||||+|.+.++|.+||..| ++..|+|++|.|.|+
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 46899999999999999999999999 8999999999989999999999999999999999887 457899999999999
Q ss_pred cCC
Q psy1078 111 NDY 113 (199)
Q Consensus 111 ~~~ 113 (199)
.+.
T Consensus 81 ~~~ 83 (91)
T 2lxi_A 81 DPK 83 (91)
T ss_dssp CSC
T ss_pred CCC
Confidence 764
No 5
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.89 E-value=3.1e-22 Score=133.32 Aligned_cols=80 Identities=20% Similarity=0.445 Sum_probs=77.2
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEEeecC
Q psy1078 33 SAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHVND 112 (199)
Q Consensus 33 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~a~~ 112 (199)
+.+|||+|||+.+++++|+.+|..||.|..+.+++++.+|.++|||||+|.+.++|.+|+..|||..|+|+.|+|.|+.+
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 46899999999999999999999999999999999988999999999999999999999999999999999999999975
No 6
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.88 E-value=7.4e-22 Score=139.56 Aligned_cols=89 Identities=25% Similarity=0.496 Sum_probs=83.0
Q ss_pred ccCCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEE
Q psy1078 27 HDQYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIR 106 (199)
Q Consensus 27 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~ 106 (199)
.....+.++|||+|||+.+++++|+.+|..||.|..|.|+.++.+|.++|||||+|.+.++|++||..|||..|+|+.|+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 88 (115)
T 2dgo_A 9 KKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIR 88 (115)
T ss_dssp CCCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 34457889999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred EEeecCCCC
Q psy1078 107 VDHVNDYKP 115 (199)
Q Consensus 107 v~~a~~~~~ 115 (199)
|.|+.+...
T Consensus 89 V~~a~~~~~ 97 (115)
T 2dgo_A 89 TNWATRKPP 97 (115)
T ss_dssp EEESSCCCC
T ss_pred EEEccCCCC
Confidence 999987543
No 7
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=5.4e-22 Score=137.62 Aligned_cols=87 Identities=28% Similarity=0.442 Sum_probs=81.8
Q ss_pred cCCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEE
Q psy1078 28 DQYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRV 107 (199)
Q Consensus 28 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v 107 (199)
....+.++|||+|||+.+++++|+.+|..||.|..|.|+.++.+|.++|||||+|.+.++|.+||..|||..|.|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 89 (103)
T 2cq0_A 10 RRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNV 89 (103)
T ss_dssp CCCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 34567899999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred EeecCCC
Q psy1078 108 DHVNDYK 114 (199)
Q Consensus 108 ~~a~~~~ 114 (199)
.|+.+..
T Consensus 90 ~~a~~~~ 96 (103)
T 2cq0_A 90 EWAKPST 96 (103)
T ss_dssp EESSCCC
T ss_pred EECCCCC
Confidence 9997644
No 8
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.88 E-value=3e-22 Score=134.56 Aligned_cols=83 Identities=24% Similarity=0.491 Sum_probs=77.1
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEEe
Q psy1078 30 YKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDH 109 (199)
Q Consensus 30 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~ 109 (199)
..+.++|||+|||+.+++++|+.+|+.||.|..|.++.++.+|.++|||||+|.+.++|..|+..|||..|+|+.|.|.|
T Consensus 3 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (87)
T 3bs9_A 3 LGSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 82 (87)
T ss_dssp ---CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEe
Confidence 35678999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ecC
Q psy1078 110 VND 112 (199)
Q Consensus 110 a~~ 112 (199)
+.+
T Consensus 83 a~~ 85 (87)
T 3bs9_A 83 ATR 85 (87)
T ss_dssp EC-
T ss_pred cCC
Confidence 975
No 9
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=4e-22 Score=136.05 Aligned_cols=86 Identities=27% Similarity=0.454 Sum_probs=80.8
Q ss_pred ccCCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEE
Q psy1078 27 HDQYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIR 106 (199)
Q Consensus 27 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~ 106 (199)
.....+.++|||+|||+.+++++|+.+|..||.|..|.|+.++.+|.++|||||+|.+.++|.+|+..|||..|+|+.|.
T Consensus 9 ~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 88 (95)
T 2cqc_A 9 RANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR 88 (95)
T ss_dssp CCSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 34557788999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred EEeecC
Q psy1078 107 VDHVND 112 (199)
Q Consensus 107 v~~a~~ 112 (199)
|.|+.+
T Consensus 89 v~~a~~ 94 (95)
T 2cqc_A 89 VSGPSS 94 (95)
T ss_dssp EECCSC
T ss_pred EEecCC
Confidence 999864
No 10
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.88 E-value=5.3e-23 Score=141.11 Aligned_cols=82 Identities=21% Similarity=0.367 Sum_probs=75.8
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCC--eEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCC----EeCCee
Q psy1078 31 KDSAWIFVGGLPYDLSEGDVICIFSQYGE--IVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGV----KVLSRT 104 (199)
Q Consensus 31 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~--i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~----~i~g~~ 104 (199)
..=.+|||+|||+.+|+++|+.+|++||. |..|.+++++.+|.++|||||+|.+.++|.+||..|||. .|+|++
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~ 86 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKT 86 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEE
T ss_pred CccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEE
Confidence 34468999999999999999999999995 679999999999999999999999999999999999996 599999
Q ss_pred EEEEeecC
Q psy1078 105 IRVDHVND 112 (199)
Q Consensus 105 l~v~~a~~ 112 (199)
|.|.||++
T Consensus 87 i~V~~Aks 94 (95)
T 2lkz_A 87 IGVDFAKS 94 (95)
T ss_dssp EEEEECCC
T ss_pred EEEEEccC
Confidence 99999864
No 11
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.88 E-value=4e-22 Score=133.33 Aligned_cols=82 Identities=27% Similarity=0.524 Sum_probs=78.3
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEEe
Q psy1078 30 YKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDH 109 (199)
Q Consensus 30 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~ 109 (199)
..+.++|||+|||+.+++++|+.+|.+||.|..+.++.++.+|.++|||||+|.+.++|.+|+..|||..|+|+.|+|.|
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45778999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ec
Q psy1078 110 VN 111 (199)
Q Consensus 110 a~ 111 (199)
++
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 73
No 12
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.88 E-value=6.6e-22 Score=136.26 Aligned_cols=85 Identities=31% Similarity=0.438 Sum_probs=80.2
Q ss_pred ccCCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEE--------EEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCC
Q psy1078 27 HDQYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVN--------LNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGV 98 (199)
Q Consensus 27 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~--------~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~ 98 (199)
....+..++|||+|||+.+++++|+.+|+.||.|.. +.|+.++.+|.++|||||+|.+.++|.+|+..|||.
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~ 86 (99)
T 2la6_A 7 HHSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGK 86 (99)
T ss_dssp CCSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCC
Confidence 445677899999999999999999999999999999 999999889999999999999999999999999999
Q ss_pred EeCCeeEEEEeec
Q psy1078 99 KVLSRTIRVDHVN 111 (199)
Q Consensus 99 ~i~g~~l~v~~a~ 111 (199)
.|.|+.|+|.||.
T Consensus 87 ~~~g~~l~V~~A~ 99 (99)
T 2la6_A 87 EFSGNPIKVSFAT 99 (99)
T ss_dssp BSSSSBCEEEECC
T ss_pred EeCCcEEEEEecC
Confidence 9999999999973
No 13
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.87 E-value=6.5e-22 Score=138.70 Aligned_cols=91 Identities=27% Similarity=0.572 Sum_probs=84.1
Q ss_pred CCCccccCCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeC
Q psy1078 22 SKTSWHDQYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVL 101 (199)
Q Consensus 22 ~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~ 101 (199)
...+.....++.++|||+|||+.+++++|+.+|++||.|..|.|+.++.+|.++|||||+|.+.++|.+|+..|||..|+
T Consensus 15 ~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~ 94 (108)
T 2jrs_A 15 MANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELA 94 (108)
T ss_dssp SCCSSCCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSS
T ss_pred cccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 34444556678899999999999999999999999999999999999889999999999999999999999999999999
Q ss_pred CeeEEEEeecC
Q psy1078 102 SRTIRVDHVND 112 (199)
Q Consensus 102 g~~l~v~~a~~ 112 (199)
|+.|.|.|+.+
T Consensus 95 g~~l~V~~a~~ 105 (108)
T 2jrs_A 95 GRPMKVGHVTE 105 (108)
T ss_dssp SSCCEEECSCS
T ss_pred CEEEEEEEccc
Confidence 99999999875
No 14
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.87 E-value=9.9e-22 Score=138.97 Aligned_cols=86 Identities=23% Similarity=0.464 Sum_probs=81.0
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEE
Q psy1078 29 QYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVD 108 (199)
Q Consensus 29 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~ 108 (199)
..++.++|||+|||+.+++++|+.+|..||.|..|.|+.++.+|.++|||||+|.+.++|.+||..|||..|.|+.|+|.
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 100 (115)
T 2cpz_A 21 EGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQ 100 (115)
T ss_dssp CCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred eecCCC
Q psy1078 109 HVNDYK 114 (199)
Q Consensus 109 ~a~~~~ 114 (199)
|+.+..
T Consensus 101 ~a~~~~ 106 (115)
T 2cpz_A 101 LKRSKN 106 (115)
T ss_dssp CCCCSC
T ss_pred EcCCCC
Confidence 997644
No 15
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=7.3e-22 Score=137.34 Aligned_cols=87 Identities=24% Similarity=0.483 Sum_probs=81.6
Q ss_pred cCCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEE
Q psy1078 28 DQYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRV 107 (199)
Q Consensus 28 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v 107 (199)
......++|||+|||+.+++++|+.+|.+||.|..|.|+.++.+|.++|||||+|.+.++|.+||..|||..|.|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 89 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRV 89 (105)
T ss_dssp CCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 34567889999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred EeecCCC
Q psy1078 108 DHVNDYK 114 (199)
Q Consensus 108 ~~a~~~~ 114 (199)
.|+.+..
T Consensus 90 ~~a~~~~ 96 (105)
T 1x5u_A 90 NKASAHN 96 (105)
T ss_dssp EETTTTS
T ss_pred EECCCCC
Confidence 9997643
No 16
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=8.3e-22 Score=134.31 Aligned_cols=84 Identities=30% Similarity=0.540 Sum_probs=79.3
Q ss_pred cCCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEE
Q psy1078 28 DQYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRV 107 (199)
Q Consensus 28 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v 107 (199)
...+..++|||+|||+.+++++|+.+|.+||.|..|.|+.++.+|.++|||||+|.+.++|.+|+..|||..|.|+.|+|
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 90 (94)
T 2e5h_A 11 GLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKA 90 (94)
T ss_dssp SCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 34567789999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred Eeec
Q psy1078 108 DHVN 111 (199)
Q Consensus 108 ~~a~ 111 (199)
.||+
T Consensus 91 ~~ak 94 (94)
T 2e5h_A 91 SIAI 94 (94)
T ss_dssp EECC
T ss_pred EecC
Confidence 9973
No 17
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.87 E-value=9.2e-22 Score=146.49 Aligned_cols=114 Identities=23% Similarity=0.399 Sum_probs=95.0
Q ss_pred CchhhhHHHHhhchhcccC-----------------CCCCccccCCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEE
Q psy1078 2 NPLTNVKNIKKLSEQELSS-----------------GSKTSWHDQYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLN 64 (199)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~ 64 (199)
++..|.+|+..+++..... .............++|||+|||+.+++++|+.+|+.||.|..|.
T Consensus 22 ~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~ 101 (158)
T 2kn4_A 22 DAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVY 101 (158)
T ss_dssp SHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEE
T ss_pred HHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEE
Confidence 5778889998888643110 00111122235578999999999999999999999999999999
Q ss_pred EeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEEeecCCCC
Q psy1078 65 LVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHVNDYKP 115 (199)
Q Consensus 65 ~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~a~~~~~ 115 (199)
|+.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.|+.+..+
T Consensus 102 i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 152 (158)
T 2kn4_A 102 IPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRP 152 (158)
T ss_dssp CCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSSC
T ss_pred EeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCC
Confidence 999988999999999999999999999999999999999999999987543
No 18
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=5.7e-22 Score=138.11 Aligned_cols=85 Identities=29% Similarity=0.469 Sum_probs=80.4
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEEe
Q psy1078 30 YKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDH 109 (199)
Q Consensus 30 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~ 109 (199)
..++++|||+|||+.+++++|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+|+..|||..|+|+.|.|.|
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 99 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 99 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEe
Confidence 45678999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred ecCCC
Q psy1078 110 VNDYK 114 (199)
Q Consensus 110 a~~~~ 114 (199)
+.+..
T Consensus 100 a~~~~ 104 (106)
T 1p27_B 100 CFVRG 104 (106)
T ss_dssp SEESS
T ss_pred ecCCC
Confidence 97643
No 19
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.87 E-value=1.2e-21 Score=137.56 Aligned_cols=87 Identities=21% Similarity=0.348 Sum_probs=81.5
Q ss_pred cCCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhC------CCEeC
Q psy1078 28 DQYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLN------GVKVL 101 (199)
Q Consensus 28 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~ln------g~~i~ 101 (199)
......++|||+|||+.+++++|+.+|..||.|..|.|++++.+|.++|||||+|.+.++|.+||..|| +..|+
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~ 89 (111)
T 1x4h_A 10 SDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLD 89 (111)
T ss_dssp CCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESS
T ss_pred CcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEc
Confidence 345678899999999999999999999999999999999998899999999999999999999999999 99999
Q ss_pred CeeEEEEeecCCC
Q psy1078 102 SRTIRVDHVNDYK 114 (199)
Q Consensus 102 g~~l~v~~a~~~~ 114 (199)
|+.|.|.|+.+..
T Consensus 90 g~~l~v~~a~~~~ 102 (111)
T 1x4h_A 90 GRQLKVDLAVTRD 102 (111)
T ss_dssp SCEEEEECCCCCC
T ss_pred CEEEEEEECCCCc
Confidence 9999999997643
No 20
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=1e-21 Score=134.09 Aligned_cols=85 Identities=33% Similarity=0.624 Sum_probs=80.3
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEEe
Q psy1078 30 YKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDH 109 (199)
Q Consensus 30 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~ 109 (199)
.+.+++|||+|||+.+++++|+.+|.+||.|..|.|+.++.+|.++|||||+|.+.++|.+|+..|||..|.|+.|+|.|
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 81 (95)
T 2dnz_A 2 SSGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGH 81 (95)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 35678999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred ecCCC
Q psy1078 110 VNDYK 114 (199)
Q Consensus 110 a~~~~ 114 (199)
+.+..
T Consensus 82 a~~~~ 86 (95)
T 2dnz_A 82 VTERL 86 (95)
T ss_dssp SSCCC
T ss_pred ccccc
Confidence 97643
No 21
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.87 E-value=9.4e-22 Score=135.35 Aligned_cols=85 Identities=29% Similarity=0.421 Sum_probs=80.6
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEEe
Q psy1078 30 YKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDH 109 (199)
Q Consensus 30 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~ 109 (199)
..+.++|||+|||+.+++++|+.+|..||.|..|.|+.++.+|.++|||||+|.+.++|.+||..|||..|.|+.|.|.|
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 46778999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ecCCC
Q psy1078 110 VNDYK 114 (199)
Q Consensus 110 a~~~~ 114 (199)
+.+..
T Consensus 85 a~~~~ 89 (99)
T 1whw_A 85 STIKK 89 (99)
T ss_dssp CCCCS
T ss_pred cCCCc
Confidence 98644
No 22
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.87 E-value=6.9e-22 Score=137.06 Aligned_cols=87 Identities=21% Similarity=0.385 Sum_probs=81.6
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEE
Q psy1078 29 QYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVD 108 (199)
Q Consensus 29 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~ 108 (199)
...+.++|||+|||+.+++++|+.+|..||.|..|.|+.++.+|.++|||||+|.+.++|++||..|||..|+|+.|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQ 88 (103)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 44678999999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred eecCCCC
Q psy1078 109 HVNDYKP 115 (199)
Q Consensus 109 ~a~~~~~ 115 (199)
|+.+...
T Consensus 89 ~a~~~~~ 95 (103)
T 2dnm_A 89 VARYGRR 95 (103)
T ss_dssp ECSSCCS
T ss_pred ECCcCCC
Confidence 9986443
No 23
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.87 E-value=8.8e-22 Score=134.88 Aligned_cols=82 Identities=33% Similarity=0.607 Sum_probs=78.4
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEEeec
Q psy1078 32 DSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHVN 111 (199)
Q Consensus 32 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~a~ 111 (199)
++++|||+|||+.+++++|+.+|++||.|..|.|+.++.+|.++|||||+|.+.++|.+|+..|||..|+|+.|.|.|+.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 36799999999999999999999999999999999998889999999999999999999999999999999999999997
Q ss_pred CC
Q psy1078 112 DY 113 (199)
Q Consensus 112 ~~ 113 (199)
+.
T Consensus 81 ~~ 82 (96)
T 2x1f_A 81 NS 82 (96)
T ss_dssp CS
T ss_pred CC
Confidence 63
No 24
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=8e-22 Score=136.44 Aligned_cols=86 Identities=26% Similarity=0.502 Sum_probs=81.1
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEE
Q psy1078 29 QYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVD 108 (199)
Q Consensus 29 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~ 108 (199)
...+.++|||+|||+.+++++|+.+|..||.|..|.|+.++.+|.++|||||+|.+.++|.+||..|||..|+|+.|.|.
T Consensus 8 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2cqb_A 8 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 87 (102)
T ss_dssp SCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 34678899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred eecCCC
Q psy1078 109 HVNDYK 114 (199)
Q Consensus 109 ~a~~~~ 114 (199)
|+.+..
T Consensus 88 ~a~~~~ 93 (102)
T 2cqb_A 88 LAKPMR 93 (102)
T ss_dssp ECCCCC
T ss_pred eCCCCC
Confidence 998644
No 25
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.87 E-value=9.8e-23 Score=138.16 Aligned_cols=81 Identities=19% Similarity=0.350 Sum_probs=72.9
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCC--CeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEEeec
Q psy1078 34 AWIFVGGLPYDLSEGDVICIFSQYG--EIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHVN 111 (199)
Q Consensus 34 ~~l~V~nLp~~~te~~L~~~F~~~G--~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~a~ 111 (199)
.+|||+|||+.+++++|+.+|+.|| .|..+.|+.++.+|.++|||||+|.+.++|++||..|||..|+|+.|.|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 99999999999899999999999999999999999999999999999999997
Q ss_pred CCC
Q psy1078 112 DYK 114 (199)
Q Consensus 112 ~~~ 114 (199)
+..
T Consensus 82 ~~~ 84 (90)
T 3p5t_L 82 KLE 84 (90)
T ss_dssp ---
T ss_pred CCc
Confidence 643
No 26
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.87 E-value=2.5e-21 Score=134.65 Aligned_cols=85 Identities=25% Similarity=0.433 Sum_probs=79.6
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCC---eeE
Q psy1078 29 QYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLS---RTI 105 (199)
Q Consensus 29 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g---~~l 105 (199)
.....++|||+|||+.+++++|+.+|..||.|..|.|+.++ +|.++|||||+|.+.++|.+||..|||..|.| +.|
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l 89 (105)
T 2dnh_A 11 RGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSL 89 (105)
T ss_dssp SCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccE
Confidence 44678999999999999999999999999999999999997 89999999999999999999999999999998 999
Q ss_pred EEEeecCCC
Q psy1078 106 RVDHVNDYK 114 (199)
Q Consensus 106 ~v~~a~~~~ 114 (199)
.|.|+.+..
T Consensus 90 ~V~~a~~~~ 98 (105)
T 2dnh_A 90 VVKFADTDK 98 (105)
T ss_dssp EEEESCSSC
T ss_pred EEEECccCc
Confidence 999998643
No 27
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=8.3e-22 Score=134.81 Aligned_cols=84 Identities=29% Similarity=0.470 Sum_probs=79.7
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEE-EEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEEe
Q psy1078 31 KDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNL-NLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDH 109 (199)
Q Consensus 31 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~-~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~ 109 (199)
..+++|||+|||+.+++++|+.+|..||.|..+ .|+.++.+|.++|||||+|.+.++|.+|+..|||..|.|+.|.|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 467899999999999999999999999999999 9999988999999999999999999999999999999999999999
Q ss_pred ecCCC
Q psy1078 110 VNDYK 114 (199)
Q Consensus 110 a~~~~ 114 (199)
+.+..
T Consensus 83 a~~~~ 87 (96)
T 1x5t_A 83 AFKKD 87 (96)
T ss_dssp SCCCC
T ss_pred ecccC
Confidence 97644
No 28
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.87 E-value=1.3e-21 Score=136.40 Aligned_cols=87 Identities=17% Similarity=0.417 Sum_probs=81.2
Q ss_pred cCCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeec-CCCCCcceEEEEEecCHHHHHHHHHhh-CCCEeCCeeE
Q psy1078 28 DQYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRD-KITGKSKGFCFICYEDQRSTVLSVDNL-NGVKVLSRTI 105 (199)
Q Consensus 28 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~-~~~g~~~g~afV~f~~~~~a~~Ai~~l-ng~~i~g~~l 105 (199)
......++|||+|||+.+++++|+.+|..||.|..|.|+.+ +.+|.++|||||+|.+.++|.+||..| ||..|.|+.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l 89 (107)
T 2cph_A 10 PKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRL 89 (107)
T ss_dssp CCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBC
T ss_pred ccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEE
Confidence 34567889999999999999999999999999999999998 778999999999999999999999999 9999999999
Q ss_pred EEEeecCCC
Q psy1078 106 RVDHVNDYK 114 (199)
Q Consensus 106 ~v~~a~~~~ 114 (199)
.|.|+.+..
T Consensus 90 ~v~~a~~~~ 98 (107)
T 2cph_A 90 VLEWADSEV 98 (107)
T ss_dssp EEEECCCCC
T ss_pred EEEeCCCCC
Confidence 999997643
No 29
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.87 E-value=1.9e-21 Score=134.86 Aligned_cols=86 Identities=21% Similarity=0.404 Sum_probs=79.8
Q ss_pred cCCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEE
Q psy1078 28 DQYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRV 107 (199)
Q Consensus 28 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v 107 (199)
....+.++|||+|||+.+++++|+.+|..||.|..|.|+.+ +|.++|||||+|.+.++|.+||..|||..|.|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 87 (103)
T 2d9p_A 10 ITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 87 (103)
T ss_dssp CCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 34467889999999999999999999999999999999988 7999999999999999999999999999999999999
Q ss_pred EeecCCCC
Q psy1078 108 DHVNDYKP 115 (199)
Q Consensus 108 ~~a~~~~~ 115 (199)
.|+.+...
T Consensus 88 ~~a~~~~~ 95 (103)
T 2d9p_A 88 ALAQRKEE 95 (103)
T ss_dssp EECSSCCC
T ss_pred EEeccccc
Confidence 99987543
No 30
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.87 E-value=3.4e-21 Score=133.61 Aligned_cols=84 Identities=32% Similarity=0.567 Sum_probs=79.0
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEE
Q psy1078 29 QYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVD 108 (199)
Q Consensus 29 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~ 108 (199)
+....++|||+|||+.+++++|+.+|..|| |..|.|+.++.+|.++|||||+|.+.++|.+|| .|||..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 88 (103)
T 2dng_A 11 PTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVD 88 (103)
T ss_dssp CSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEE
Confidence 446778999999999999999999999997 999999999889999999999999999999999 999999999999999
Q ss_pred eecCCC
Q psy1078 109 HVNDYK 114 (199)
Q Consensus 109 ~a~~~~ 114 (199)
|+.+..
T Consensus 89 ~a~~~~ 94 (103)
T 2dng_A 89 IAEGRK 94 (103)
T ss_dssp ECCCCC
T ss_pred EecCCC
Confidence 997643
No 31
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=2.5e-21 Score=133.50 Aligned_cols=84 Identities=24% Similarity=0.490 Sum_probs=79.4
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEE
Q psy1078 29 QYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVD 108 (199)
Q Consensus 29 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~ 108 (199)
...+.++|||+|||+.+++++|+.+|..||.|..|.|+.++ +|.++|||||+|.+.++|.+|+..|||..|+|+.|.|.
T Consensus 13 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 91 (100)
T 2do4_A 13 TSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVA 91 (100)
T ss_dssp SCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34667899999999999999999999999999999999998 89999999999999999999999999999999999999
Q ss_pred eecCC
Q psy1078 109 HVNDY 113 (199)
Q Consensus 109 ~a~~~ 113 (199)
|+.+.
T Consensus 92 ~a~~~ 96 (100)
T 2do4_A 92 ISNSG 96 (100)
T ss_dssp ECCCC
T ss_pred ECCCC
Confidence 99763
No 32
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.87 E-value=2e-21 Score=133.82 Aligned_cols=84 Identities=24% Similarity=0.485 Sum_probs=79.4
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEEe
Q psy1078 30 YKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDH 109 (199)
Q Consensus 30 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~ 109 (199)
..+.++|||+|||+.+++++|+.+|..||.|..|.|+.++.+|.++|||||+|.+.++|.+||. ||+..|+|+.|.|.|
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~ 85 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKR 85 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEE
Confidence 4677899999999999999999999999999999999998899999999999999999999997 999999999999999
Q ss_pred ecCCC
Q psy1078 110 VNDYK 114 (199)
Q Consensus 110 a~~~~ 114 (199)
+.+..
T Consensus 86 a~~~~ 90 (99)
T 2dgs_A 86 AEPRD 90 (99)
T ss_dssp CCCCC
T ss_pred CCCCc
Confidence 98643
No 33
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.87 E-value=1.3e-21 Score=134.42 Aligned_cols=85 Identities=21% Similarity=0.327 Sum_probs=78.7
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCC---CCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEE
Q psy1078 31 KDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKI---TGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRV 107 (199)
Q Consensus 31 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~---~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v 107 (199)
.+.++|||+|||+.+++++|+.+|..||.|..|.|+.++. ++.++|||||+|.+.++|.+|+..|||..|+|+.|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 5678999999999999999999999999999999998875 5689999999999999999999999999999999999
Q ss_pred EeecCCCC
Q psy1078 108 DHVNDYKP 115 (199)
Q Consensus 108 ~~a~~~~~ 115 (199)
.|+.+...
T Consensus 83 ~~a~~~~~ 90 (98)
T 2cpf_A 83 RISERATK 90 (98)
T ss_dssp ECSSCSSC
T ss_pred EEccCCCC
Confidence 99976443
No 34
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.87 E-value=1.2e-21 Score=137.50 Aligned_cols=86 Identities=29% Similarity=0.488 Sum_probs=80.8
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEE
Q psy1078 29 QYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVD 108 (199)
Q Consensus 29 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~ 108 (199)
...++++|||+|||+.+++++|+.+|..||.|..|.|+.++.+|.++|||||+|.+.++|..|+..|||..|+|+.|.|.
T Consensus 22 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 101 (110)
T 1oo0_B 22 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 101 (110)
T ss_dssp CBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 34677899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred eecCCC
Q psy1078 109 HVNDYK 114 (199)
Q Consensus 109 ~a~~~~ 114 (199)
|+.+..
T Consensus 102 ~a~~~~ 107 (110)
T 1oo0_B 102 WCFVKG 107 (110)
T ss_dssp ESEESS
T ss_pred EcccCC
Confidence 997643
No 35
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=1.2e-21 Score=135.62 Aligned_cols=86 Identities=34% Similarity=0.589 Sum_probs=81.4
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEE
Q psy1078 29 QYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVD 108 (199)
Q Consensus 29 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~ 108 (199)
...+.++|||+|||+.+++++|+.+|..||.|..|.|+.++.++.++|||||+|.+.++|.+||..|||..|.|+.|+|.
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 87 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 87 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 45678999999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred eecCCC
Q psy1078 109 HVNDYK 114 (199)
Q Consensus 109 ~a~~~~ 114 (199)
|+.+..
T Consensus 88 ~a~~~~ 93 (102)
T 1x5s_A 88 QAGKSS 93 (102)
T ss_dssp EEECCC
T ss_pred ECCCCC
Confidence 998644
No 36
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.87 E-value=1.6e-22 Score=139.85 Aligned_cols=82 Identities=23% Similarity=0.435 Sum_probs=78.2
Q ss_pred CCCcEEEEeCCCC------CCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCC-e
Q psy1078 31 KDSAWIFVGGLPY------DLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLS-R 103 (199)
Q Consensus 31 ~~~~~l~V~nLp~------~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g-~ 103 (199)
..+++|||+|||+ .+++++|+.+|++||.|..|.|++++.+|+++|||||+|.+.++|.+||..|||..|.| +
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 3467999999999 99999999999999999999999999899999999999999999999999999999999 9
Q ss_pred eEEEEeecC
Q psy1078 104 TIRVDHVND 112 (199)
Q Consensus 104 ~l~v~~a~~ 112 (199)
.|.|.++.+
T Consensus 84 ~l~V~~a~~ 92 (100)
T 3ns6_A 84 RLFLYTMKD 92 (100)
T ss_dssp BCEEEESHH
T ss_pred EEEEEECch
Confidence 999999865
No 37
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=1.2e-21 Score=134.91 Aligned_cols=85 Identities=21% Similarity=0.430 Sum_probs=80.3
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhccCCCeE-EEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCee----
Q psy1078 30 YKDSAWIFVGGLPYDLSEGDVICIFSQYGEIV-NLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRT---- 104 (199)
Q Consensus 30 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~---- 104 (199)
...+++|||+|||+.+++++|+.+|.+||.|. .|.|+.++.+|.++|||||+|.+.++|++|+..|||..|.|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 45678999999999999999999999999999 9999999889999999999999999999999999999999999
Q ss_pred EEEEeecCCC
Q psy1078 105 IRVDHVNDYK 114 (199)
Q Consensus 105 l~v~~a~~~~ 114 (199)
|+|.|+.+..
T Consensus 86 l~v~~a~~~~ 95 (99)
T 2div_A 86 FKLNYATYSG 95 (99)
T ss_dssp CCEEETTCCS
T ss_pred EEEeecCCCC
Confidence 9999997643
No 38
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.86 E-value=1.7e-21 Score=130.99 Aligned_cols=83 Identities=18% Similarity=0.424 Sum_probs=77.4
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCC-cceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEEe
Q psy1078 31 KDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGK-SKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDH 109 (199)
Q Consensus 31 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~-~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~ 109 (199)
...++|||+|||+.+++++|+.+|.+||.|..+.|+.+..++. ++|||||+|.+.++|.+|+..|||..|+|+.|.|.+
T Consensus 2 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 81 (88)
T 4a8x_A 2 MKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATA 81 (88)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEE
Confidence 3568999999999999999999999999999999999876666 899999999999999999999999999999999999
Q ss_pred ecCC
Q psy1078 110 VNDY 113 (199)
Q Consensus 110 a~~~ 113 (199)
+.+.
T Consensus 82 a~~~ 85 (88)
T 4a8x_A 82 VLAP 85 (88)
T ss_dssp ECCC
T ss_pred CCCC
Confidence 9764
No 39
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.86 E-value=2.3e-21 Score=130.68 Aligned_cols=81 Identities=26% Similarity=0.460 Sum_probs=77.2
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEEeec
Q psy1078 32 DSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHVN 111 (199)
Q Consensus 32 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~a~ 111 (199)
+.++|||+|||+.+++++|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|.+|+ .|||..|.|+.|.|.++.
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 3578999999999999999999999999999999999889999999999999999999999 999999999999999987
Q ss_pred CC
Q psy1078 112 DY 113 (199)
Q Consensus 112 ~~ 113 (199)
+.
T Consensus 84 ~~ 85 (89)
T 3ucg_A 84 TN 85 (89)
T ss_dssp TT
T ss_pred CC
Confidence 63
No 40
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=2.7e-21 Score=136.26 Aligned_cols=87 Identities=26% Similarity=0.396 Sum_probs=81.2
Q ss_pred cCCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeE--------EEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCE
Q psy1078 28 DQYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIV--------NLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVK 99 (199)
Q Consensus 28 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~--------~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~ 99 (199)
....+.++|||+|||+.+++++|+.+|..||.|. .|.|+.++.+|.++|||||+|.+.++|.+||..|||..
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~ 89 (113)
T 2cpe_A 10 DEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKD 89 (113)
T ss_dssp CCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCE
T ss_pred ccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCc
Confidence 3456789999999999999999999999999999 69999998899999999999999999999999999999
Q ss_pred eCCeeEEEEeecCCC
Q psy1078 100 VLSRTIRVDHVNDYK 114 (199)
Q Consensus 100 i~g~~l~v~~a~~~~ 114 (199)
|.|+.|+|.|+.+..
T Consensus 90 ~~g~~l~V~~a~~~~ 104 (113)
T 2cpe_A 90 FQGSKLKVSLARKKP 104 (113)
T ss_dssp ETTEECEEECSSCCC
T ss_pred cCCCEEEEEECCCCC
Confidence 999999999997643
No 41
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.86 E-value=1.5e-21 Score=135.92 Aligned_cols=88 Identities=27% Similarity=0.541 Sum_probs=81.7
Q ss_pred ccCCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEe---CCe
Q psy1078 27 HDQYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKV---LSR 103 (199)
Q Consensus 27 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i---~g~ 103 (199)
.....+.++|||+|||+.+++++|+.+|.+||.|..|.|+.++.+|.++|||||+|.+.++|.+||..|||..+ .|+
T Consensus 7 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~ 86 (106)
T 2dgp_A 7 GMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNR 86 (106)
T ss_dssp SCCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSS
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCc
Confidence 34567789999999999999999999999999999999999988899999999999999999999999999988 899
Q ss_pred eEEEEeecCCC
Q psy1078 104 TIRVDHVNDYK 114 (199)
Q Consensus 104 ~l~v~~a~~~~ 114 (199)
.|.|.|+.+..
T Consensus 87 ~l~v~~a~~~~ 97 (106)
T 2dgp_A 87 PIQVKPADSES 97 (106)
T ss_dssp CCEEEECCCCS
T ss_pred eEEEEECCccc
Confidence 99999997643
No 42
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.86 E-value=3.8e-21 Score=129.24 Aligned_cols=81 Identities=31% Similarity=0.539 Sum_probs=76.1
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEE
Q psy1078 29 QYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVD 108 (199)
Q Consensus 29 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~ 108 (199)
...+.++|||+|||+.+++++|+.+|.+||.|..|.|+.++.+|.++|||||+|.+.++|.+|+ .+++..|+|+.|.|.
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~~~~~~~~g~~i~v~ 85 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVL-DQKEHRLDGRVIDPK 85 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHH-HSSCEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHH-HhCCCEECCEEEEEE
Confidence 4567889999999999999999999999999999999999889999999999999999999999 558889999999999
Q ss_pred ee
Q psy1078 109 HV 110 (199)
Q Consensus 109 ~a 110 (199)
+|
T Consensus 86 ~A 87 (87)
T 3s7r_A 86 KA 87 (87)
T ss_dssp EC
T ss_pred eC
Confidence 85
No 43
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=9.5e-21 Score=131.28 Aligned_cols=85 Identities=22% Similarity=0.494 Sum_probs=78.4
Q ss_pred cCCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEE
Q psy1078 28 DQYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRV 107 (199)
Q Consensus 28 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v 107 (199)
......++|||+|||+.+++++|+.+|..||.|..|.|+.+. +.++|||||+|.+.++|.+||..|||..|+|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~--~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 87 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 87 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCT--TTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecC--CCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 445778999999999999999999999999999999999885 348999999999999999999999999999999999
Q ss_pred EeecCCC
Q psy1078 108 DHVNDYK 114 (199)
Q Consensus 108 ~~a~~~~ 114 (199)
.|+.+..
T Consensus 88 ~~a~~~~ 94 (103)
T 2cq3_A 88 NNATARV 94 (103)
T ss_dssp EECCSSC
T ss_pred EEcccCC
Confidence 9998644
No 44
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=7.5e-21 Score=131.79 Aligned_cols=85 Identities=20% Similarity=0.474 Sum_probs=77.9
Q ss_pred cCCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEE
Q psy1078 28 DQYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRV 107 (199)
Q Consensus 28 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v 107 (199)
......++|||+|||+.+++++|+.+|.+||.|..|.|+.++ +.++|||||+|.+.++|.+|+..|||..|.|+.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~--~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 87 (103)
T 2cqi_A 10 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEH--TSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKV 87 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCC--CSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecC--CCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEE
Confidence 345678999999999999999999999999999999999885 346899999999999999999999999999999999
Q ss_pred EeecCCC
Q psy1078 108 DHVNDYK 114 (199)
Q Consensus 108 ~~a~~~~ 114 (199)
.|+.+..
T Consensus 88 ~~a~~~~ 94 (103)
T 2cqi_A 88 NWATTPS 94 (103)
T ss_dssp EECCCTT
T ss_pred EECCCCc
Confidence 9997643
No 45
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.86 E-value=2.2e-21 Score=137.68 Aligned_cols=83 Identities=22% Similarity=0.476 Sum_probs=78.2
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEE
Q psy1078 29 QYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVD 108 (199)
Q Consensus 29 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~ 108 (199)
...+.++|||+|||+.+++++|+.+|..||.|..|.|+.++.+|.++|||||+|.+.++|++|+..|||..|+|+.|+|.
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 115 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQ 115 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34667899999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred eec
Q psy1078 109 HVN 111 (199)
Q Consensus 109 ~a~ 111 (199)
|++
T Consensus 116 ~ak 118 (118)
T 2khc_A 116 LKK 118 (118)
T ss_dssp EC-
T ss_pred ecC
Confidence 973
No 46
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.86 E-value=3.7e-22 Score=145.39 Aligned_cols=112 Identities=21% Similarity=0.417 Sum_probs=82.4
Q ss_pred hhhHHHHhhchhcccCCCCCcccc---CCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEE
Q psy1078 5 TNVKNIKKLSEQELSSGSKTSWHD---QYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFIC 81 (199)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~ 81 (199)
.+..||..+++.........++.. ...+.++|||+|||+.+++++|+.+|+.||.|..|.|+.++.+|.++|||||+
T Consensus 16 ~~~~a~~~~~g~~~~g~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~ 95 (135)
T 2lea_A 16 PRGSHMASMTGGQQMGRGSMSYGRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVR 95 (135)
T ss_dssp -------------------CCSCCSCSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEE
T ss_pred chhhhhhhccCCCCCCCCCCCcCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEE
Confidence 466778888777633322222222 23456799999999999999999999999999999999998889999999999
Q ss_pred ecCHHHHHHHHHhhCCCEeCCeeEEEEeecCCCCC
Q psy1078 82 YEDQRSTVLSVDNLNGVKVLSRTIRVDHVNDYKPP 116 (199)
Q Consensus 82 f~~~~~a~~Ai~~lng~~i~g~~l~v~~a~~~~~~ 116 (199)
|.+.++|++||..|||..|.|+.|.|.|+.+..++
T Consensus 96 F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~~ 130 (135)
T 2lea_A 96 FHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPP 130 (135)
T ss_dssp CSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCCCC
T ss_pred ECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCCC
Confidence 99999999999999999999999999999875443
No 47
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.86 E-value=8.1e-21 Score=141.17 Aligned_cols=110 Identities=18% Similarity=0.399 Sum_probs=96.3
Q ss_pred CchhhhHHHHhhchhcccC-CCCCccc-----cCCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcc
Q psy1078 2 NPLTNVKNIKKLSEQELSS-GSKTSWH-----DQYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSK 75 (199)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~-~~~~~~~-----~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~ 75 (199)
+++.|..|+..+|+..+.. .....|. ......++|||+|||+.+++++|+.+|+.||.|..+.++.++.+|.++
T Consensus 50 ~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~ 129 (166)
T 3md3_A 50 QSHDANIALQTLNGKQIENNIVKINWAFQSQQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSR 129 (166)
T ss_dssp SHHHHHHHHHHHTTCEETTEECEEEECCCCCCCCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEE
T ss_pred CHHHHHHHHHHcCCCccCCCeeEEEEcCCCCCCCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcc
Confidence 5788999999999988543 2222221 234567899999999999999999999999999999999998899999
Q ss_pred eEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEEeec
Q psy1078 76 GFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHVN 111 (199)
Q Consensus 76 g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~a~ 111 (199)
|||||+|.+.++|.+|+..|||..|+|+.|.|.||.
T Consensus 130 g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 165 (166)
T 3md3_A 130 GYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAA 165 (166)
T ss_dssp EEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESC
T ss_pred eEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEecC
Confidence 999999999999999999999999999999999985
No 48
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.86 E-value=5.1e-21 Score=133.49 Aligned_cols=82 Identities=20% Similarity=0.433 Sum_probs=78.1
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEE
Q psy1078 29 QYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVD 108 (199)
Q Consensus 29 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~ 108 (199)
.....++|||+|||+.+++++|+.+|..||.|..|.|+.++ +|.++|||||+|.+.++|.+||..|||..|.|+.|.|.
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 103 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQ 103 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 34667899999999999999999999999999999999998 99999999999999999999999999999999999999
Q ss_pred eec
Q psy1078 109 HVN 111 (199)
Q Consensus 109 ~a~ 111 (199)
|+.
T Consensus 104 ~a~ 106 (107)
T 3ulh_A 104 LVT 106 (107)
T ss_dssp EEC
T ss_pred EeC
Confidence 985
No 49
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.86 E-value=3.6e-21 Score=131.36 Aligned_cols=83 Identities=28% Similarity=0.537 Sum_probs=77.9
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEE
Q psy1078 29 QYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVD 108 (199)
Q Consensus 29 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~ 108 (199)
.....++|||+|||+.+++++|+.+|.+||.|..|.|+.++ +|.++|||||+|.+.++|.+|+..|||..|+|+.|.|.
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDR-EGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVS 90 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEE
Confidence 34667899999999999999999999999999999999997 49999999999999999999999999999999999999
Q ss_pred eecC
Q psy1078 109 HVND 112 (199)
Q Consensus 109 ~a~~ 112 (199)
|+..
T Consensus 91 ~a~~ 94 (95)
T 2ywk_A 91 GPSS 94 (95)
T ss_dssp CCCC
T ss_pred EcCC
Confidence 9853
No 50
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=5.1e-21 Score=132.95 Aligned_cols=84 Identities=27% Similarity=0.439 Sum_probs=78.5
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCC-CCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEE
Q psy1078 29 QYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKIT-GKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRV 107 (199)
Q Consensus 29 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~-g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v 107 (199)
+....++|||+|||+.+++++|+.+|..|| |..|.|+.++.+ |.++|||||+|.+.++|.+|| .||+..|.|+.|.|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 88 (104)
T 1wi8_A 11 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRV 88 (104)
T ss_dssp CSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEE
Confidence 345678999999999999999999999999 999999999877 999999999999999999999 99999999999999
Q ss_pred EeecCCC
Q psy1078 108 DHVNDYK 114 (199)
Q Consensus 108 ~~a~~~~ 114 (199)
.++.+..
T Consensus 89 ~~a~~~~ 95 (104)
T 1wi8_A 89 DVADQAQ 95 (104)
T ss_dssp EECCCCC
T ss_pred EEccCCC
Confidence 9997643
No 51
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.86 E-value=2.2e-21 Score=144.67 Aligned_cols=81 Identities=19% Similarity=0.377 Sum_probs=76.9
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCC--CeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEEe
Q psy1078 32 DSAWIFVGGLPYDLSEGDVICIFSQYG--EIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDH 109 (199)
Q Consensus 32 ~~~~l~V~nLp~~~te~~L~~~F~~~G--~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~ 109 (199)
..++|||+|||+.+++++|+.+|..|| .|..|.|+.++.+|.++|||||+|.+.++|++||..|||..|+|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 457999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred ecC
Q psy1078 110 VND 112 (199)
Q Consensus 110 a~~ 112 (199)
+.+
T Consensus 134 a~~ 136 (156)
T 3n9u_C 134 ATR 136 (156)
T ss_dssp CCH
T ss_pred cCC
Confidence 864
No 52
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=7.2e-21 Score=134.70 Aligned_cols=86 Identities=26% Similarity=0.424 Sum_probs=80.1
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEE
Q psy1078 29 QYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVD 108 (199)
Q Consensus 29 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~ 108 (199)
.....++|||+|||+.+++++|+.+|..||.|..|.|+.++.++.++|||||+|.+.++|++||..|++ .|.|+.|.|.
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~ 91 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVN 91 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEE
Confidence 346778999999999999999999999999999999999988999999999999999999999999998 8999999999
Q ss_pred eecCCCC
Q psy1078 109 HVNDYKP 115 (199)
Q Consensus 109 ~a~~~~~ 115 (199)
|+.....
T Consensus 92 ~a~~~~~ 98 (116)
T 2cqd_A 92 LAYLGAK 98 (116)
T ss_dssp ESTTTCC
T ss_pred EcccCCC
Confidence 9976443
No 53
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=1.2e-21 Score=136.23 Aligned_cols=81 Identities=19% Similarity=0.297 Sum_probs=76.5
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEEe
Q psy1078 30 YKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDH 109 (199)
Q Consensus 30 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~ 109 (199)
..+.++|||+|||+.+|+++|+.+|++||.|..|.|++++. |.++|||||+|.+.++|.+||. ++|..|+|+.|.|.|
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~ 85 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILF 85 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEE
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEE
Confidence 45678999999999999999999999999999999999986 9999999999999999999997 999999999999999
Q ss_pred ecC
Q psy1078 110 VND 112 (199)
Q Consensus 110 a~~ 112 (199)
+..
T Consensus 86 ~~~ 88 (103)
T 1s79_A 86 KDD 88 (103)
T ss_dssp HHH
T ss_pred chH
Confidence 865
No 54
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=1.6e-20 Score=132.36 Aligned_cols=84 Identities=24% Similarity=0.395 Sum_probs=79.0
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEE
Q psy1078 29 QYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVD 108 (199)
Q Consensus 29 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~ 108 (199)
.....++|||+|||+.+++++|+.+|..||.|..|.|+.++ +|.++|||||+|.+.++|.+||..|||..|+|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 89 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVK 89 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEE
Confidence 45678899999999999999999999999999999999997 69999999999999999999999999999999999999
Q ss_pred eecCC
Q psy1078 109 HVNDY 113 (199)
Q Consensus 109 ~a~~~ 113 (199)
|+...
T Consensus 90 ~a~~~ 94 (114)
T 2do0_A 90 MDERA 94 (114)
T ss_dssp ECSCC
T ss_pred EcccC
Confidence 98753
No 55
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=5e-21 Score=131.25 Aligned_cols=82 Identities=18% Similarity=0.217 Sum_probs=76.2
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHH----HHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCee
Q psy1078 29 QYKDSAWIFVGGLPYDLSEGDVI----CIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRT 104 (199)
Q Consensus 29 ~~~~~~~l~V~nLp~~~te~~L~----~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~ 104 (199)
+..+.++|||+|||+.+++++|+ .+|.+||.|..|.|+.++.+ +|||||+|.+.++|.+||..|||..|+|+.
T Consensus 5 ~~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~ 81 (96)
T 2dgx_A 5 SSGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKK 81 (96)
T ss_dssp CCSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 45677899999999999999999 99999999999999988644 899999999999999999999999999999
Q ss_pred EEEEeecCC
Q psy1078 105 IRVDHVNDY 113 (199)
Q Consensus 105 l~v~~a~~~ 113 (199)
|+|.|+.+.
T Consensus 82 l~V~~a~~~ 90 (96)
T 2dgx_A 82 ILVSLATGA 90 (96)
T ss_dssp EEEEECCCS
T ss_pred EEEEEcCCC
Confidence 999999764
No 56
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=3e-21 Score=132.58 Aligned_cols=83 Identities=18% Similarity=0.273 Sum_probs=78.2
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEEe
Q psy1078 30 YKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDH 109 (199)
Q Consensus 30 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~ 109 (199)
....++|||+|||+.+++++|+.+|..||.|..+.++.++.+|.++|||||+|.+.++|++||..|||..|+|+.|.|.+
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 91 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL 91 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 45668999999999999999999999999999888888888999999999999999999999999999999999999999
Q ss_pred ecC
Q psy1078 110 VND 112 (199)
Q Consensus 110 a~~ 112 (199)
+..
T Consensus 92 a~~ 94 (98)
T 2cqp_A 92 GSG 94 (98)
T ss_dssp SSC
T ss_pred cCC
Confidence 864
No 57
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.85 E-value=2.8e-21 Score=138.74 Aligned_cols=87 Identities=30% Similarity=0.493 Sum_probs=81.6
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEE
Q psy1078 29 QYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVD 108 (199)
Q Consensus 29 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~ 108 (199)
...++++|||+|||+.+++++|+.+|..||.|..|.|+.++.+|.++|||||+|.+.++|++||..|||..|+|+.|.|.
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 97 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 97 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 45678899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred eecCCCC
Q psy1078 109 HVNDYKP 115 (199)
Q Consensus 109 ~a~~~~~ 115 (199)
|+.+...
T Consensus 98 ~a~~~~~ 104 (126)
T 3ex7_B 98 WCFVRGP 104 (126)
T ss_dssp ESEESSS
T ss_pred EecCCCC
Confidence 9976443
No 58
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.85 E-value=2.1e-21 Score=140.35 Aligned_cols=86 Identities=28% Similarity=0.463 Sum_probs=81.0
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEE
Q psy1078 29 QYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVD 108 (199)
Q Consensus 29 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~ 108 (199)
...+.++|||+|||+.+++++|+.+|..||.|..|.|+.++.+|.++|||||+|.+.++|++||..|||..|+|+.|.|.
T Consensus 42 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~ 121 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 121 (129)
T ss_dssp CCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEES
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 44677899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred eecCCC
Q psy1078 109 HVNDYK 114 (199)
Q Consensus 109 ~a~~~~ 114 (199)
|+.+..
T Consensus 122 ~a~~~~ 127 (129)
T 2kxn_B 122 FSITKR 127 (129)
T ss_dssp CCSSSS
T ss_pred EecCCC
Confidence 997643
No 59
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.85 E-value=4.3e-21 Score=140.01 Aligned_cols=86 Identities=22% Similarity=0.417 Sum_probs=80.9
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEE
Q psy1078 29 QYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVD 108 (199)
Q Consensus 29 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~ 108 (199)
.....++|||+|||+.+++++|+.+|..||.|..|.|+.++.+|.++|||||+|.+.++|.+||..|||..|.|+.|.|.
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 117 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVA 117 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34567899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred eecCCC
Q psy1078 109 HVNDYK 114 (199)
Q Consensus 109 ~a~~~~ 114 (199)
|+.+..
T Consensus 118 ~a~~~~ 123 (139)
T 1u6f_A 118 LAASGH 123 (139)
T ss_dssp ESSCCC
T ss_pred ECCCCC
Confidence 998643
No 60
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.85 E-value=4.7e-21 Score=135.96 Aligned_cols=84 Identities=26% Similarity=0.536 Sum_probs=79.1
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEEe
Q psy1078 30 YKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDH 109 (199)
Q Consensus 30 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~ 109 (199)
..+.++|||+|||+.+++++|+.+|+.||.|..|.|+.+. +|.++|||||+|.+.++|++|+..|||..|+|+.|.|.|
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 82 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQ 82 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3567899999999999999999999999999999999997 899999999999999999999999999999999999999
Q ss_pred ecCCC
Q psy1078 110 VNDYK 114 (199)
Q Consensus 110 a~~~~ 114 (199)
+.+..
T Consensus 83 a~~~~ 87 (116)
T 2fy1_A 83 AKKPS 87 (116)
T ss_dssp CCCSS
T ss_pred CCCCC
Confidence 97643
No 61
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.85 E-value=2.4e-21 Score=151.04 Aligned_cols=109 Identities=17% Similarity=0.272 Sum_probs=94.2
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEEe
Q psy1078 30 YKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDH 109 (199)
Q Consensus 30 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~ 109 (199)
..+.++|||||||+.+|+++|+.+|++||.|..|.|++++.+|.++|||||+|.+.++|.+||..||+..+.|+.|+|.+
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~ 91 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 91 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccc
Confidence 35678999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred ecCCCCCCCCCCChhhccceeeccCCCCCCCCCC
Q psy1078 110 VNDYKPPKDNKYTDEETKKLRTIGCAPGTEFGSI 143 (199)
Q Consensus 110 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (199)
+..... ........||+++++..+++..+
T Consensus 92 ~~~~~~-----~~~~~~~~l~v~nl~~~~t~~~l 120 (213)
T 4f02_A 92 SQRDPS-----LRKSGVGNIFIKNLDKSIDNKAL 120 (213)
T ss_dssp CCCCTH-----HHHHCTTEEEEESCCTTCCHHHH
T ss_pred cccccc-----ccccccccceECCcccccHHHHH
Confidence 864321 11234467999999998886655
No 62
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=5e-21 Score=133.16 Aligned_cols=85 Identities=26% Similarity=0.445 Sum_probs=80.0
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEE
Q psy1078 29 QYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVD 108 (199)
Q Consensus 29 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~ 108 (199)
...+.++|||+|||+.+++++|+.+|..||.|..|.|+.++.+|.++|||||+|.+.++|.+||.. |+..|+|+.|.|.
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~ 90 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPK 90 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEE
Confidence 456789999999999999999999999999999999999988999999999999999999999988 9999999999999
Q ss_pred eecCCC
Q psy1078 109 HVNDYK 114 (199)
Q Consensus 109 ~a~~~~ 114 (199)
|+.+..
T Consensus 91 ~a~~~~ 96 (105)
T 2dh8_A 91 PCTPRG 96 (105)
T ss_dssp CSCCSS
T ss_pred EccCCC
Confidence 997643
No 63
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=2.5e-20 Score=129.16 Aligned_cols=85 Identities=25% Similarity=0.397 Sum_probs=78.3
Q ss_pred cCCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEE
Q psy1078 28 DQYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRV 107 (199)
Q Consensus 28 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v 107 (199)
....+.++|||+|||+.+++++|+.+|..||.|..|.|+.++.+|.++|||||+|.+.++|.+||. +++.|+|+.|.|
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v 87 (103)
T 2cqg_A 10 RAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDC 87 (103)
T ss_dssp CCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEE
T ss_pred CccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEE
Confidence 344677899999999999999999999999999999999998899999999999999999999997 478999999999
Q ss_pred EeecCCC
Q psy1078 108 DHVNDYK 114 (199)
Q Consensus 108 ~~a~~~~ 114 (199)
.|+.+..
T Consensus 88 ~~a~~~~ 94 (103)
T 2cqg_A 88 KLPNSKQ 94 (103)
T ss_dssp ECCCTTC
T ss_pred EecCCCC
Confidence 9997643
No 64
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.85 E-value=1.6e-20 Score=139.72 Aligned_cols=88 Identities=27% Similarity=0.496 Sum_probs=82.1
Q ss_pred cCCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEE
Q psy1078 28 DQYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRV 107 (199)
Q Consensus 28 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v 107 (199)
....+.++|||+|||+.+++++|+.+|..||.|..|.|+.++.++.++|||||+|.+.++|++||..||+..|+|+.|.|
T Consensus 34 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 113 (156)
T 1h2v_Z 34 KLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRT 113 (156)
T ss_dssp TTTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 33457899999999999999999999999999999999999989999999999999999999999999999999999999
Q ss_pred EeecCCCC
Q psy1078 108 DHVNDYKP 115 (199)
Q Consensus 108 ~~a~~~~~ 115 (199)
.|+.+...
T Consensus 114 ~~a~~~~~ 121 (156)
T 1h2v_Z 114 DWDAGFKE 121 (156)
T ss_dssp EEESCCCT
T ss_pred EECCCCCC
Confidence 99986443
No 65
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=4.3e-21 Score=133.18 Aligned_cols=85 Identities=24% Similarity=0.351 Sum_probs=79.5
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhcc-CCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCE-eCCeeEE
Q psy1078 29 QYKDSAWIFVGGLPYDLSEGDVICIFSQ-YGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVK-VLSRTIR 106 (199)
Q Consensus 29 ~~~~~~~l~V~nLp~~~te~~L~~~F~~-~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~-i~g~~l~ 106 (199)
.....++|||+|||+.+++++|+.+|.. ||.|..|.|+.++ +|.++|||||+|.+.++|.+||..|||.. |+|+.|.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~ 83 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVR 83 (104)
T ss_dssp CSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEE
Confidence 3466789999999999999999999999 9999999999998 99999999999999999999999999999 9999999
Q ss_pred EEeecCCC
Q psy1078 107 VDHVNDYK 114 (199)
Q Consensus 107 v~~a~~~~ 114 (199)
|.|+.+..
T Consensus 84 v~~a~~~~ 91 (104)
T 2dhg_A 84 LSVAIPKA 91 (104)
T ss_dssp CCBCCCCC
T ss_pred EEEccCCC
Confidence 99997643
No 66
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.85 E-value=2.6e-21 Score=132.10 Aligned_cols=82 Identities=18% Similarity=0.295 Sum_probs=76.0
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEEe
Q psy1078 30 YKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDH 109 (199)
Q Consensus 30 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~ 109 (199)
.+..++|||+|||+.+++++|+.+|.+||.|..+.++.++.+|.++|||||+|.+.++|++||..|||..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~ 91 (95)
T 2ek1_A 12 KPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSG 91 (95)
T ss_dssp ---CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEe
Confidence 35568999999999999999999999999999998988888999999999999999999999999999999999999999
Q ss_pred ec
Q psy1078 110 VN 111 (199)
Q Consensus 110 a~ 111 (199)
+.
T Consensus 92 a~ 93 (95)
T 2ek1_A 92 PS 93 (95)
T ss_dssp CC
T ss_pred cc
Confidence 75
No 67
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.85 E-value=8.7e-21 Score=128.70 Aligned_cols=83 Identities=24% Similarity=0.374 Sum_probs=77.7
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEEe
Q psy1078 30 YKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDH 109 (199)
Q Consensus 30 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~ 109 (199)
..+.++|||+|||+.+++++|+.+|.+||.|..|.|+.+ +|.++|||||+|.+.++|.+|+..|||..|+|+.|.|.|
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 82 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRI 82 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 467789999999999999999999999999999999874 799999999999999999999999999999999999999
Q ss_pred ecCCC
Q psy1078 110 VNDYK 114 (199)
Q Consensus 110 a~~~~ 114 (199)
+.+..
T Consensus 83 a~~~~ 87 (92)
T 2dgv_A 83 DRNAS 87 (92)
T ss_dssp CSCCS
T ss_pred cCCCC
Confidence 97644
No 68
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.85 E-value=3.9e-21 Score=138.50 Aligned_cols=97 Identities=13% Similarity=0.240 Sum_probs=75.1
Q ss_pred hchhcccCCCCCccccCCCCCcEEEEeCCCCCCCHHHHH----HHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHH
Q psy1078 13 LSEQELSSGSKTSWHDQYKDSAWIFVGGLPYDLSEGDVI----CIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRST 88 (199)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~----~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a 88 (199)
+..+.+..+...+.....+++++|||+|||+.+++++|+ .+|++||.|..|.+.. +|.++|||||+|.+.++|
T Consensus 9 ~~~~~~~~p~~~s~~~~~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A 85 (127)
T 2a3j_A 9 FERQHMDSPDLGSTPPHTEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESA 85 (127)
T ss_dssp -------------CCCCCSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHH
T ss_pred hhhccCCCCCcCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHH
Confidence 333444433333333445678899999999999999876 6999999999988753 688999999999999999
Q ss_pred HHHHHhhCCCEeCCeeEEEEeecC
Q psy1078 89 VLSVDNLNGVKVLSRTIRVDHVND 112 (199)
Q Consensus 89 ~~Ai~~lng~~i~g~~l~v~~a~~ 112 (199)
..|+..|||..|.|+.|+|.|+..
T Consensus 86 ~~Ai~~lng~~l~gr~l~V~~a~~ 109 (127)
T 2a3j_A 86 QAFVEAFQGYPFQGNPLVITFSET 109 (127)
T ss_dssp HHHHHHSTTCCCTTSCCEEEECCC
T ss_pred HHHHHHHCCCEeCCCEEEEEEccC
Confidence 999999999999999999999975
No 69
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.85 E-value=1.1e-20 Score=141.55 Aligned_cols=108 Identities=24% Similarity=0.413 Sum_probs=94.2
Q ss_pred CchhhhHHHHhhchhcccC-CCCCcccc---CCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceE
Q psy1078 2 NPLTNVKNIKKLSEQELSS-GSKTSWHD---QYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGF 77 (199)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~ 77 (199)
+++.|..|+ .+|+..+.. .....+.. ......+|||+|||+.+++++|+.+|++||.|..+.++.++.+|.++||
T Consensus 60 ~~~~A~~A~-~~~~~~~~g~~i~v~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~ 138 (172)
T 2g4b_A 60 SVDETTQAM-AFDGIIFQGQSLKIRRPHDYQPLPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGY 138 (172)
T ss_dssp SHHHHHHHG-GGTTCEETTEECEEECCSSCCCCTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEE
T ss_pred CHHHHHHHH-HhCCcEecCceeeecCCcccCCCCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceE
Confidence 678899999 898887543 22222222 2345789999999999999999999999999999999999889999999
Q ss_pred EEEEecCHHHHHHHHHhhCCCEeCCeeEEEEee
Q psy1078 78 CFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHV 110 (199)
Q Consensus 78 afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~a 110 (199)
|||+|.+.++|.+|+..|||..|+|+.|.|.||
T Consensus 139 afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 139 AFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp EEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred EEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 999999999999999999999999999999997
No 70
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=4.4e-21 Score=133.42 Aligned_cols=80 Identities=23% Similarity=0.333 Sum_probs=73.0
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhC--CCEeCCeeEE
Q psy1078 29 QYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLN--GVKVLSRTIR 106 (199)
Q Consensus 29 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~ln--g~~i~g~~l~ 106 (199)
...+.++|||+|||+.+++++|+.+|++||.|..|.|+++ +|||||+|.+.++|..|+..|+ +..|.|++|+
T Consensus 12 ~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 85 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 85 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 3567889999999999999999999999999999999865 6999999999999999999886 4799999999
Q ss_pred EEeecCCC
Q psy1078 107 VDHVNDYK 114 (199)
Q Consensus 107 v~~a~~~~ 114 (199)
|.|+.+..
T Consensus 86 V~~A~~~~ 93 (105)
T 1sjq_A 86 IQFSNHKE 93 (105)
T ss_dssp BCCCSSSS
T ss_pred EEEcCCCC
Confidence 99997643
No 71
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.85 E-value=8.5e-21 Score=133.17 Aligned_cols=85 Identities=24% Similarity=0.380 Sum_probs=75.3
Q ss_pred cCCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEE
Q psy1078 28 DQYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRV 107 (199)
Q Consensus 28 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v 107 (199)
+...+.++|||+|||+.+++++|+.+|+.||.|..|.|++++.+|.++|||||+|.+.++|.+||..+ +..|+|+.|.|
T Consensus 20 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V 98 (109)
T 2rs2_A 20 HMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDP 98 (109)
T ss_dssp ------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEE
Confidence 34567889999999999999999999999999999999999888999999999999999999999876 59999999999
Q ss_pred EeecCC
Q psy1078 108 DHVNDY 113 (199)
Q Consensus 108 ~~a~~~ 113 (199)
.++.+.
T Consensus 99 ~~a~~~ 104 (109)
T 2rs2_A 99 KVAFPR 104 (109)
T ss_dssp EECCCC
T ss_pred EEccCC
Confidence 999764
No 72
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=7.9e-22 Score=132.03 Aligned_cols=82 Identities=22% Similarity=0.399 Sum_probs=77.4
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEEe
Q psy1078 30 YKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDH 109 (199)
Q Consensus 30 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~ 109 (199)
..++++|||+|||+.+++++|+.+|.+||.|..|.|+.++.+|.++|||||+|.+.++|..|+..|||..|.|+.|+|.|
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 2 SSGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence 35678999999999999999999999999999999999988999999999999999999999999999999999998887
Q ss_pred ec
Q psy1078 110 VN 111 (199)
Q Consensus 110 a~ 111 (199)
+.
T Consensus 82 ~~ 83 (85)
T 1x4e_A 82 PS 83 (85)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 73
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.84 E-value=1.3e-20 Score=141.54 Aligned_cols=84 Identities=30% Similarity=0.501 Sum_probs=79.2
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEEee
Q psy1078 31 KDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHV 110 (199)
Q Consensus 31 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~a 110 (199)
..+++|||+|||+.+++++|+.+|.+||.|..|.|+.++.+|.++|||||+|.+.++|..||..|||..|.|+.|.|.|+
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 149 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 149 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 45678999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred cCCC
Q psy1078 111 NDYK 114 (199)
Q Consensus 111 ~~~~ 114 (199)
.+..
T Consensus 150 ~~~~ 153 (165)
T 1rk8_A 150 FVKG 153 (165)
T ss_dssp EECC
T ss_pred cCCC
Confidence 7644
No 74
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.84 E-value=2.2e-20 Score=133.76 Aligned_cols=84 Identities=19% Similarity=0.400 Sum_probs=79.1
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEEe
Q psy1078 30 YKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDH 109 (199)
Q Consensus 30 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~ 109 (199)
...+++|||+|||+.+++++|+.+|..||.|..|.|+.++ +|.++|||||+|.+.++|.+|+..|||..|+|+.|+|.|
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 110 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 110 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 3556899999999999999999999999999999999998 899999999999999999999999999999999999999
Q ss_pred ecCCC
Q psy1078 110 VNDYK 114 (199)
Q Consensus 110 a~~~~ 114 (199)
|.+..
T Consensus 111 a~~~~ 115 (124)
T 2kt5_A 111 VASQI 115 (124)
T ss_dssp ECCTT
T ss_pred eCCCC
Confidence 97643
No 75
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.84 E-value=1.3e-20 Score=137.22 Aligned_cols=82 Identities=27% Similarity=0.521 Sum_probs=77.7
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEE
Q psy1078 29 QYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVD 108 (199)
Q Consensus 29 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~ 108 (199)
.....++|||+|||+.+++++|+.+|.+||.|..+.|+.++.+|.++|||||+|.+.++|.+|+..|||..|+|+.|+|.
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 138 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 138 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34678899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred ee
Q psy1078 109 HV 110 (199)
Q Consensus 109 ~a 110 (199)
||
T Consensus 139 ~A 140 (140)
T 2ku7_A 139 LA 140 (140)
T ss_dssp C-
T ss_pred eC
Confidence 86
No 76
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=4.2e-21 Score=133.18 Aligned_cols=81 Identities=38% Similarity=0.677 Sum_probs=77.8
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEEeec
Q psy1078 32 DSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHVN 111 (199)
Q Consensus 32 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~a~ 111 (199)
..++|||+|||+.+++++|+.+|..||.|..|.++.++.+|.++|||||+|.+.++|.+|+..|||..|.|+.|.|.|+.
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 45789999999999999999999999999999999998899999999999999999999999999999999999999987
Q ss_pred C
Q psy1078 112 D 112 (199)
Q Consensus 112 ~ 112 (199)
+
T Consensus 87 ~ 87 (104)
T 1p1t_A 87 S 87 (104)
T ss_dssp C
T ss_pred C
Confidence 5
No 77
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.84 E-value=1.8e-21 Score=127.31 Aligned_cols=75 Identities=25% Similarity=0.464 Sum_probs=72.1
Q ss_pred EEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEEee
Q psy1078 35 WIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHV 110 (199)
Q Consensus 35 ~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~a 110 (199)
+|||+|||+.+++++|+.+|++||.|..|.++.++.+|.++|||||+|.+.++|++|+. |||..|+|+.|.|.||
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 59999999999999999999999999999999998889999999999999999999996 9999999999999985
No 78
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=3.1e-20 Score=125.81 Aligned_cols=82 Identities=17% Similarity=0.313 Sum_probs=77.1
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEE
Q psy1078 29 QYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVD 108 (199)
Q Consensus 29 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~ 108 (199)
.....++|||+|||+.+++++|+.+|..| .|..|.|+++ .+|.++|||||+|.+.++|.+||. |||..|+|+.|.|.
T Consensus 6 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~ 82 (91)
T 2dgw_A 6 SGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVF 82 (91)
T ss_dssp CCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEE
T ss_pred CCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEE
Confidence 34677899999999999999999999999 9999999999 689999999999999999999998 99999999999999
Q ss_pred eecCC
Q psy1078 109 HVNDY 113 (199)
Q Consensus 109 ~a~~~ 113 (199)
++.+.
T Consensus 83 ~a~~~ 87 (91)
T 2dgw_A 83 REKSG 87 (91)
T ss_dssp EESSC
T ss_pred ECCcC
Confidence 99753
No 79
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=7.4e-21 Score=133.08 Aligned_cols=86 Identities=19% Similarity=0.376 Sum_probs=78.9
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhccCCC-eEEEEEe-ecCCCCCcceEEEEEecCHHHHHHHHHhhC--CCEeCCeeE
Q psy1078 30 YKDSAWIFVGGLPYDLSEGDVICIFSQYGE-IVNLNLV-RDKITGKSKGFCFICYEDQRSTVLSVDNLN--GVKVLSRTI 105 (199)
Q Consensus 30 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~-i~~~~~~-~~~~~g~~~g~afV~f~~~~~a~~Ai~~ln--g~~i~g~~l 105 (199)
..+.++|||+|||+.+++++|+.+|..||. |..|.|+ .+..+|.++|||||+|.+.++|..|+..|| +..|+|+.|
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 356789999999999999999999999998 9999998 777788999999999999999999999996 599999999
Q ss_pred EEEeecCCCC
Q psy1078 106 RVDHVNDYKP 115 (199)
Q Consensus 106 ~v~~a~~~~~ 115 (199)
.|.|+.+...
T Consensus 85 ~V~~a~~~~~ 94 (109)
T 2dis_A 85 AVDWAEPEID 94 (109)
T ss_dssp EEEESCSSCS
T ss_pred EEEEcCCCCC
Confidence 9999986443
No 80
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=6.1e-21 Score=134.67 Aligned_cols=80 Identities=23% Similarity=0.416 Sum_probs=76.8
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEEeec
Q psy1078 32 DSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHVN 111 (199)
Q Consensus 32 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~a~ 111 (199)
..++|||+|||+.+++++|+.+|..||.|..|.|+.++.+|.++|||||+|.+.++|.+|| .|||..|+|+.|.|.|+.
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQ 102 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecC
Confidence 4579999999999999999999999999999999999888999999999999999999999 999999999999999986
Q ss_pred C
Q psy1078 112 D 112 (199)
Q Consensus 112 ~ 112 (199)
+
T Consensus 103 ~ 103 (114)
T 2cq4_A 103 A 103 (114)
T ss_dssp H
T ss_pred C
Confidence 5
No 81
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=8.8e-21 Score=131.52 Aligned_cols=80 Identities=15% Similarity=0.218 Sum_probs=72.2
Q ss_pred CCCCCcEEEEeCCCC-CCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCC--CEeCCeeE
Q psy1078 29 QYKDSAWIFVGGLPY-DLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNG--VKVLSRTI 105 (199)
Q Consensus 29 ~~~~~~~l~V~nLp~-~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng--~~i~g~~l 105 (199)
...++++|||+|||+ .+++++|+.+|.+||.|..|.|+++ +|||||+|.+.++|..||..||+ ..|.|++|
T Consensus 11 ~~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l 84 (102)
T 1x4d_A 11 RVETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPV 84 (102)
T ss_dssp CCCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEEC
T ss_pred CCCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEE
Confidence 345788999999999 9999999999999999999999865 58999999999999999999886 46999999
Q ss_pred EEEeecCCC
Q psy1078 106 RVDHVNDYK 114 (199)
Q Consensus 106 ~v~~a~~~~ 114 (199)
+|.|+..+.
T Consensus 85 ~V~~a~~~~ 93 (102)
T 1x4d_A 85 RVHLSQKYK 93 (102)
T ss_dssp EEEEECCCT
T ss_pred EEEECCCCC
Confidence 999998643
No 82
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.84 E-value=1.7e-20 Score=134.21 Aligned_cols=82 Identities=26% Similarity=0.459 Sum_probs=77.9
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEEeec
Q psy1078 32 DSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHVN 111 (199)
Q Consensus 32 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~a~ 111 (199)
+.++|||+|||+.+++++|+.+|..||.|..|.|+.++.+|.++|||||+|.+.++|.+|| .|||..|+|+.|.|.|+.
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 4689999999999999999999999999999999999889999999999999999999999 899999999999999997
Q ss_pred CCC
Q psy1078 112 DYK 114 (199)
Q Consensus 112 ~~~ 114 (199)
+..
T Consensus 114 ~~~ 116 (124)
T 2jwn_A 114 TNM 116 (124)
T ss_dssp CCC
T ss_pred CCC
Confidence 643
No 83
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.84 E-value=2.1e-20 Score=143.16 Aligned_cols=111 Identities=23% Similarity=0.375 Sum_probs=94.4
Q ss_pred CchhhhHHHHhhchhcccC-CCCCcccc-----------------------CCCCCcEEEEeCCCCCCCHHHHHHHhccC
Q psy1078 2 NPLTNVKNIKKLSEQELSS-GSKTSWHD-----------------------QYKDSAWIFVGGLPYDLSEGDVICIFSQY 57 (199)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~-----------------------~~~~~~~l~V~nLp~~~te~~L~~~F~~~ 57 (199)
+++.|.+|+ .||+..+.. .....|.. .....++|||+|||+.+++++|+.+|..|
T Consensus 60 ~~~~A~~Al-~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~ 138 (198)
T 2yh0_A 60 SVDETTQAM-AFDGIIFQGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSF 138 (198)
T ss_dssp CSHHHHHHG-GGTTEEETTEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTB
T ss_pred CHHHHHHHH-HhcCCEEcCceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHc
Confidence 578899999 888876432 11111111 11456899999999999999999999999
Q ss_pred CCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEEeecCC
Q psy1078 58 GEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHVNDY 113 (199)
Q Consensus 58 G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~a~~~ 113 (199)
|.|..|.++.++.+|.++|||||+|.+.++|.+|+..|||..|+|+.|.|.|+.+.
T Consensus 139 G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 194 (198)
T 2yh0_A 139 GPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVG 194 (198)
T ss_dssp SCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCC
T ss_pred CCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCC
Confidence 99999999999889999999999999999999999999999999999999999764
No 84
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.84 E-value=2e-20 Score=139.22 Aligned_cols=104 Identities=27% Similarity=0.461 Sum_probs=93.2
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEEeecC
Q psy1078 33 SAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHVND 112 (199)
Q Consensus 33 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~a~~ 112 (199)
.++|||+|||+.+++++|+.+|..||.|..+.++.++.+|.++|||||+|.+.++|..|+..|||..|.|+.|.|.|+.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 57899999999999999999999999999999999988999999999999999999999999999999999999999875
Q ss_pred CCCCCCCCCChhhccceeeccCCCCCCCCCC
Q psy1078 113 YKPPKDNKYTDEETKKLRTIGCAPGTEFGSI 143 (199)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (199)
... ......++++++++.+++..+
T Consensus 82 ~~~-------~~~~~~l~v~nl~~~~t~~~l 105 (167)
T 1fxl_A 82 SSA-------SIRDANLYVSGLPKTMTQKEL 105 (167)
T ss_dssp CCG-------GGTTCEEEEESCCTTCCHHHH
T ss_pred Ccc-------cCCCCcEEECCCCCcCCHHHH
Confidence 322 234567999999988776554
No 85
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=1.4e-20 Score=132.34 Aligned_cols=84 Identities=18% Similarity=0.315 Sum_probs=76.8
Q ss_pred CCCCcEEEEeCCCCCCCHHHHH---HHhccCCCeEEEEEeecCCCC---CcceEEEEEecCHHHHHHHHHhhCCCEeCCe
Q psy1078 30 YKDSAWIFVGGLPYDLSEGDVI---CIFSQYGEIVNLNLVRDKITG---KSKGFCFICYEDQRSTVLSVDNLNGVKVLSR 103 (199)
Q Consensus 30 ~~~~~~l~V~nLp~~~te~~L~---~~F~~~G~i~~~~~~~~~~~g---~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~ 103 (199)
....++|||+|||+.+++++|+ .+|.+||.|..|.|+.+..++ .++|||||+|.+.++|++||..|||..|+|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 91 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGR 91 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCE
Confidence 3567899999999999999999 999999999999999887644 5669999999999999999999999999999
Q ss_pred eEEEEeecCC
Q psy1078 104 TIRVDHVNDY 113 (199)
Q Consensus 104 ~l~v~~a~~~ 113 (199)
.|+|.||.+.
T Consensus 92 ~l~V~~a~~k 101 (111)
T 2cpi_A 92 TLKASLGTTK 101 (111)
T ss_dssp EEEEESCCCC
T ss_pred EEEEEecccc
Confidence 9999999763
No 86
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.84 E-value=5.4e-21 Score=141.34 Aligned_cols=106 Identities=22% Similarity=0.363 Sum_probs=89.1
Q ss_pred CchhhhHHHHhh-chhcccCCCCC-------------------ccccCCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeE
Q psy1078 2 NPLTNVKNIKKL-SEQELSSGSKT-------------------SWHDQYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIV 61 (199)
Q Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~-------------------~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~ 61 (199)
++..|.+|+..+ |+..+...... .........++|||+|||+.+++++|+.+|++||.|.
T Consensus 22 ~~~~A~~a~~~~~ng~~~~G~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~ 101 (150)
T 2i2y_A 22 DAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLR 101 (150)
T ss_dssp SHHHHTTTHHHHHHHHTCCCEEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEE
T ss_pred CHHHHHHHHHHHhcCCCCCCceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEE
Confidence 677889999988 77654331111 1122345678999999999999999999999999999
Q ss_pred EEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEEeecC
Q psy1078 62 NLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHVND 112 (199)
Q Consensus 62 ~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~a~~ 112 (199)
.|.|+.+ ++|||||+|.+.++|..|+..|||..|+|+.|+|.|+.+
T Consensus 102 ~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 147 (150)
T 2i2y_A 102 SVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNG 147 (150)
T ss_dssp EEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCC
T ss_pred EEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCC
Confidence 9999876 489999999999999999999999999999999999875
No 87
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.84 E-value=9.4e-21 Score=132.00 Aligned_cols=82 Identities=29% Similarity=0.403 Sum_probs=75.5
Q ss_pred CCCCcEEEEeCCCCCC------CHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCe
Q psy1078 30 YKDSAWIFVGGLPYDL------SEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSR 103 (199)
Q Consensus 30 ~~~~~~l~V~nLp~~~------te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~ 103 (199)
...+++|||+|||+.+ ++++|+.+|++||.|..|.|+ +.+|.++|||||+|.+.++|.+||..|||..|+|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~ 89 (105)
T 2nlw_A 12 DGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQ 89 (105)
T ss_dssp CSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTT
T ss_pred CCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 3457899999999999 789999999999999999998 35799999999999999999999999999999998
Q ss_pred -eEEEEeecCC
Q psy1078 104 -TIRVDHVNDY 113 (199)
Q Consensus 104 -~l~v~~a~~~ 113 (199)
.|.|.|+.+.
T Consensus 90 ~~l~V~~a~~~ 100 (105)
T 2nlw_A 90 HTFRVNLFTDF 100 (105)
T ss_dssp CEEEEECSCCC
T ss_pred ceEEEEEcchH
Confidence 9999998753
No 88
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.84 E-value=1.3e-20 Score=140.57 Aligned_cols=105 Identities=19% Similarity=0.335 Sum_probs=94.0
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEEeec
Q psy1078 32 DSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHVN 111 (199)
Q Consensus 32 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~a~ 111 (199)
.+++|||+|||+.+++++|+.+|+.||.|..|.++.++.+|.++|||||+|.+.++|..|+..|+|..|.|+.|.|.|+.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 46899999999999999999999999999999999998899999999999999999999999999999999999999987
Q ss_pred CCCCCCCCCCChhhccceeeccCCCCCCCCCC
Q psy1078 112 DYKPPKDNKYTDEETKKLRTIGCAPGTEFGSI 143 (199)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (199)
+... ......+++++++...+++.+
T Consensus 82 ~~~~-------~~~~~~l~v~nl~~~~t~~~l 106 (168)
T 1b7f_A 82 PGGE-------SIKDTNLYVTNLPRTITDDQL 106 (168)
T ss_dssp CCSS-------TTTTCEEEEESCCTTCCHHHH
T ss_pred CCcc-------cCCCCCEEEeCCCCCCCHHHH
Confidence 6432 223468999999988876554
No 89
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.84 E-value=1.4e-20 Score=143.95 Aligned_cols=113 Identities=20% Similarity=0.327 Sum_probs=93.4
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEE
Q psy1078 29 QYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVD 108 (199)
Q Consensus 29 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~ 108 (199)
.....++|||+|||+.+++++|+.+|..||.|..|.|+.++.+|.++|||||+|.+.++|.+||.. ++..|.|+.|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~ 87 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPK 87 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeee
Confidence 346778999999999999999999999999999999999988999999999999999999999965 9999999999999
Q ss_pred eecCCCCCCCCCCChhhccceeeccCCCCCCCCCC
Q psy1078 109 HVNDYKPPKDNKYTDEETKKLRTIGCAPGTEFGSI 143 (199)
Q Consensus 109 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (199)
++.+....... ........||+++++..++++.+
T Consensus 88 ~~~~~~~~~~~-~~~~~~~~l~V~nLp~~~t~~~l 121 (196)
T 1l3k_A 88 RAVSREDSQRP-GAHLTVKKIFVGGIKEDTEEHHL 121 (196)
T ss_dssp ECCC------------CCSEEEEECCTTTCCHHHH
T ss_pred cccCccccccc-ccCCCcceEEEeCCCCCCCHHHH
Confidence 98764332221 12234578999999998887655
No 90
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.84 E-value=1.1e-20 Score=126.43 Aligned_cols=74 Identities=16% Similarity=0.280 Sum_probs=69.8
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEEeec
Q psy1078 32 DSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHVN 111 (199)
Q Consensus 32 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~a~ 111 (199)
.+..||||||++.+|+++|+.+|.+||+|..+.+.. ++|||||+|.+.++|.+|+..||+..+.|+.|+|.+|.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 366799999999999999999999999999999865 48999999999999999999999999999999999984
No 91
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.84 E-value=3.1e-21 Score=139.63 Aligned_cols=84 Identities=18% Similarity=0.302 Sum_probs=78.8
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEE--EEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCC----EeCCe
Q psy1078 30 YKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVN--LNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGV----KVLSR 103 (199)
Q Consensus 30 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~--~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~----~i~g~ 103 (199)
....++|||+|||+.+++++|+.+|.+||.|.. |.|++++.+|.++|||||+|.+. +|.+||..|||. .|+|+
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 356789999999999999999999999999976 99999998999999999999999 999999999999 99999
Q ss_pred eEEEEeecCCC
Q psy1078 104 TIRVDHVNDYK 114 (199)
Q Consensus 104 ~l~v~~a~~~~ 114 (199)
.|.|.|+.+..
T Consensus 99 ~l~V~~a~~~~ 109 (131)
T 2m2b_A 99 TINVEFAKGSK 109 (131)
T ss_dssp CCCCEECCCSC
T ss_pred EEEEEECCCCC
Confidence 99999997643
No 92
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=4.9e-20 Score=128.98 Aligned_cols=82 Identities=26% Similarity=0.434 Sum_probs=75.6
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEEe
Q psy1078 30 YKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDH 109 (199)
Q Consensus 30 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~ 109 (199)
....++|||+|||+.+++++|+.+|.+||.|..|.|+. ++.++|||||+|.+.++|.+||..||+..|+|+.|.|.|
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 95 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKN---RRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEF 95 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECC---SSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE---CCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 45678999999999999999999999999999999964 366899999999999999999999999999999999999
Q ss_pred ecCCC
Q psy1078 110 VNDYK 114 (199)
Q Consensus 110 a~~~~ 114 (199)
+.+..
T Consensus 96 a~~~~ 100 (109)
T 1x4a_A 96 PRSGR 100 (109)
T ss_dssp CCCCC
T ss_pred cccCC
Confidence 97644
No 93
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.84 E-value=3.4e-21 Score=133.10 Aligned_cols=82 Identities=29% Similarity=0.455 Sum_probs=74.3
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecC-CCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEE
Q psy1078 29 QYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDK-ITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRV 107 (199)
Q Consensus 29 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~-~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v 107 (199)
.....++|||+|||+.+++++|+.+|+.|| |..|.|+.++ .+|.++|||||+|.+.++|.+|| .|||..|+|+.|.|
T Consensus 15 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V 92 (100)
T 2j76_E 15 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRV 92 (100)
T ss_dssp -----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEE
Confidence 346789999999999999999999999999 9999999987 58999999999999999999999 99999999999999
Q ss_pred EeecC
Q psy1078 108 DHVND 112 (199)
Q Consensus 108 ~~a~~ 112 (199)
.++.+
T Consensus 93 ~~a~~ 97 (100)
T 2j76_E 93 DVADQ 97 (100)
T ss_dssp EECCC
T ss_pred EeccC
Confidence 99875
No 94
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=6.8e-20 Score=126.89 Aligned_cols=80 Identities=16% Similarity=0.285 Sum_probs=72.2
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhh--CCCEeCCeeEE
Q psy1078 29 QYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL--NGVKVLSRTIR 106 (199)
Q Consensus 29 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l--ng~~i~g~~l~ 106 (199)
..+++++|||+|||+.+++++|+.+|.+||.|..|.|+.+ +|||||+|.+.++|..|+..| ++..|.|++|.
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~ 84 (101)
T 2cq1_A 11 DGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIY 84 (101)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEE
Confidence 3467889999999999999999999999999999988754 799999999999999999976 57889999999
Q ss_pred EEeecCCC
Q psy1078 107 VDHVNDYK 114 (199)
Q Consensus 107 v~~a~~~~ 114 (199)
|.|+....
T Consensus 85 V~~a~~~~ 92 (101)
T 2cq1_A 85 IQYSNHKE 92 (101)
T ss_dssp EEECSCSS
T ss_pred EEEcCccc
Confidence 99997643
No 95
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=3.3e-21 Score=126.44 Aligned_cols=76 Identities=26% Similarity=0.471 Sum_probs=73.3
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEEee
Q psy1078 34 AWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHV 110 (199)
Q Consensus 34 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~a 110 (199)
++|||+|||+.+++++|+.+|++||.|..+.++.++.+|.++|||||+|.+.++|.+|+..++ ..|+|+.|.|.||
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 479999999999999999999999999999999998889999999999999999999999999 9999999999987
No 96
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=2.6e-20 Score=131.80 Aligned_cols=83 Identities=17% Similarity=0.398 Sum_probs=78.0
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEEee
Q psy1078 31 KDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHV 110 (199)
Q Consensus 31 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~a 110 (199)
.+.++|||+|||+.+++++|+.+|..||.|..|.|+.++.+|.++|||||+|.+.++|.+||.. ++..|+|+.|.|.|+
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a 103 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRA 103 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEEC
Confidence 3458999999999999999999999999999999999988999999999999999999999977 999999999999999
Q ss_pred cCCC
Q psy1078 111 NDYK 114 (199)
Q Consensus 111 ~~~~ 114 (199)
.+..
T Consensus 104 ~~~~ 107 (116)
T 1x4b_A 104 VARE 107 (116)
T ss_dssp SSCC
T ss_pred CCCc
Confidence 7643
No 97
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.4e-20 Score=133.06 Aligned_cols=83 Identities=14% Similarity=0.210 Sum_probs=77.4
Q ss_pred cCCCCCcEEEEeCCCCCCCHHHHHHHhccCCCe-EEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEE
Q psy1078 28 DQYKDSAWIFVGGLPYDLSEGDVICIFSQYGEI-VNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIR 106 (199)
Q Consensus 28 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i-~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~ 106 (199)
....+.++|||+|||+.+++++|+.+|..||.| ..|.|+.++ +|.++|||||+|.+.++|.+||.. |+..|+|+.|.
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~ 87 (114)
T 2cpy_A 10 DVNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAF 87 (114)
T ss_dssp SCCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEE
T ss_pred CCCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEE
Confidence 345677899999999999999999999999999 899999998 999999999999999999999966 99999999999
Q ss_pred EEeecC
Q psy1078 107 VDHVND 112 (199)
Q Consensus 107 v~~a~~ 112 (199)
|.++.+
T Consensus 88 v~~a~~ 93 (114)
T 2cpy_A 88 VHVVTL 93 (114)
T ss_dssp EEEECH
T ss_pred EEECCH
Confidence 999864
No 98
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=2.1e-20 Score=131.12 Aligned_cols=82 Identities=23% Similarity=0.521 Sum_probs=76.6
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEE
Q psy1078 29 QYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVD 108 (199)
Q Consensus 29 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~ 108 (199)
.....++|||+|||+.+++++|+.+|++||.|..|.|+.+. +.++|||||+|.+.++|++|+..|||..|+|+.|.|.
T Consensus 25 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 102 (109)
T 2err_A 25 NKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 102 (109)
T ss_dssp CTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34678899999999999999999999999999999999885 5589999999999999999999999999999999999
Q ss_pred eecC
Q psy1078 109 HVND 112 (199)
Q Consensus 109 ~a~~ 112 (199)
|+.+
T Consensus 103 ~a~~ 106 (109)
T 2err_A 103 NATA 106 (109)
T ss_dssp ECCC
T ss_pred ECCC
Confidence 9875
No 99
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.83 E-value=7.7e-21 Score=131.28 Aligned_cols=97 Identities=22% Similarity=0.328 Sum_probs=80.9
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEEeecCC
Q psy1078 34 AWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHVNDY 113 (199)
Q Consensus 34 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~a~~~ 113 (199)
++|||+|||+.+++++|+.+|++||.|..|.++.+ ++|||||+|.+.++|.+|+..|||..|+|+.|.|.|+.+.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 58999999999999999999999999999999876 5899999999999999999999999999999999999875
Q ss_pred CCCCCCC---CChhhccceeeccCC
Q psy1078 114 KPPKDNK---YTDEETKKLRTIGCA 135 (199)
Q Consensus 114 ~~~~~~~---~~~~~~~~~~~~~~~ 135 (199)
....... ........+|++++.
T Consensus 76 ~~~~~~~~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 76 PRRSRFDRPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp CCSSCCCSCCCSCCCCSCCCSCCCC
T ss_pred CCcccCCCCCccccCCCceecCCCC
Confidence 4322111 112235667777764
No 100
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.83 E-value=6.2e-20 Score=142.30 Aligned_cols=113 Identities=26% Similarity=0.393 Sum_probs=96.8
Q ss_pred CchhhhHHHHhhchhcccC-CCCCcccc--------------CCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEe
Q psy1078 2 NPLTNVKNIKKLSEQELSS-GSKTSWHD--------------QYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLV 66 (199)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~--------------~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~ 66 (199)
+++.|.+|+..||+..+.. .....+.. .....++|||+|||+.+++++|+.+|..||.|..|.|+
T Consensus 79 ~~~~A~~A~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~ 158 (216)
T 2qfj_A 79 VPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLA 158 (216)
T ss_dssp SHHHHHHHHHHHSSCCCC-CCCEEECCSCCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEE
T ss_pred CHHHHHHHHHHccCCeeCCeeEEEecCCCccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEE
Confidence 5788999999999887543 22222221 12456899999999999999999999999999999999
Q ss_pred ecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEEeecCCC
Q psy1078 67 RDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHVNDYK 114 (199)
Q Consensus 67 ~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~a~~~~ 114 (199)
.++.+|.++|||||+|.+.++|.+|+..|||..|+|+.|.|.|+.+..
T Consensus 159 ~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~~~~ 206 (216)
T 2qfj_A 159 RDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPP 206 (216)
T ss_dssp ECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECSSCS
T ss_pred ecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEecCCC
Confidence 998899999999999999999999999999999999999999998643
No 101
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.83 E-value=1.8e-21 Score=131.63 Aligned_cols=79 Identities=33% Similarity=0.577 Sum_probs=74.1
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEEeecCC
Q psy1078 34 AWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHVNDY 113 (199)
Q Consensus 34 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~a~~~ 113 (199)
++|||+|||+.+++++|+.+|+.||.|..|.++.++.+|.++|||||+|.+.+ |..|+..|||..|+|+.|.|.+|.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 57999999999999999999999999999999999888999999999999999 99999999999999999999999764
No 102
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=5.9e-20 Score=126.81 Aligned_cols=82 Identities=21% Similarity=0.325 Sum_probs=74.6
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEE
Q psy1078 29 QYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVD 108 (199)
Q Consensus 29 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~ 108 (199)
...+.++|||+|||+.+++++|+.+|.+||.| .++.+ .+|.++|||||+|.+.++|++||..|||..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 86 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLE 86 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEE
Confidence 45678999999999999999999999999987 56666 579999999999999999999999999999999999999
Q ss_pred eecCCC
Q psy1078 109 HVNDYK 114 (199)
Q Consensus 109 ~a~~~~ 114 (199)
|+.+..
T Consensus 87 ~a~~~~ 92 (101)
T 2fc9_A 87 LQGPRG 92 (101)
T ss_dssp ECSSCC
T ss_pred EcCCCC
Confidence 998643
No 103
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.83 E-value=2.4e-20 Score=128.46 Aligned_cols=77 Identities=16% Similarity=0.231 Sum_probs=71.1
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCE--eCCeeEEE
Q psy1078 30 YKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVK--VLSRTIRV 107 (199)
Q Consensus 30 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~--i~g~~l~v 107 (199)
.+++++|||+|||+.+|+++|+.+|++||.|..|.+++. +|||||+|.+.++|..|+..|++.. |.|++|+|
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V 91 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFV 91 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEE
Confidence 467889999999999999999999999999999999753 6999999999999999999999875 88999999
Q ss_pred EeecC
Q psy1078 108 DHVND 112 (199)
Q Consensus 108 ~~a~~ 112 (199)
.|+..
T Consensus 92 ~~S~~ 96 (100)
T 3r27_A 92 NYSTS 96 (100)
T ss_dssp EECSC
T ss_pred Eeccc
Confidence 99875
No 104
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=4.2e-20 Score=130.26 Aligned_cols=83 Identities=18% Similarity=0.432 Sum_probs=77.6
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEe--------
Q psy1078 29 QYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKV-------- 100 (199)
Q Consensus 29 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i-------- 100 (199)
...+.++|||+|||+.+++++|+.+|..||.|..|.|+.++ +|.++|||||+|.+.++|.+||..|||..|
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~ 99 (114)
T 1x5o_A 21 QEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSA 99 (114)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccC
Confidence 34577899999999999999999999999999999999998 899999999999999999999999999999
Q ss_pred CCeeEEEEeecC
Q psy1078 101 LSRTIRVDHVND 112 (199)
Q Consensus 101 ~g~~l~v~~a~~ 112 (199)
.++.|.|.|+.+
T Consensus 100 ~~~~l~v~~a~p 111 (114)
T 1x5o_A 100 PTEPLLCKFSGP 111 (114)
T ss_dssp CSSCBEEEECCC
T ss_pred CCCceeEEccCC
Confidence 578899999874
No 105
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=5.2e-21 Score=135.12 Aligned_cols=86 Identities=16% Similarity=0.349 Sum_probs=73.9
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEE
Q psy1078 29 QYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVD 108 (199)
Q Consensus 29 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~ 108 (199)
...++++|||+|||+.+++++|+.+|..||.|..+.+..+..+|.++|||||+|.+.++|.+||..|||..|.|+.|.|.
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~ 100 (115)
T 2cpx_A 21 PGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIE 100 (115)
T ss_dssp CCSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 34577899999999999999999999999999433222222278999999999999999999999999999999999999
Q ss_pred eecCCC
Q psy1078 109 HVNDYK 114 (199)
Q Consensus 109 ~a~~~~ 114 (199)
|+.+..
T Consensus 101 ~a~~~~ 106 (115)
T 2cpx_A 101 FGKNKK 106 (115)
T ss_dssp ECCCCS
T ss_pred EccCCC
Confidence 998644
No 106
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.83 E-value=5.4e-20 Score=143.37 Aligned_cols=109 Identities=19% Similarity=0.416 Sum_probs=93.3
Q ss_pred CchhhhHHHHhhchhcccC-CCCCccccC-----CCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcc
Q psy1078 2 NPLTNVKNIKKLSEQELSS-GSKTSWHDQ-----YKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSK 75 (199)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-----~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~ 75 (199)
+++.|.+|+..+|+..+.. .....+... .....+|||+|||+.+++++|+.+|..||.|..|.|+++. +.++
T Consensus 66 ~~~~A~~Ai~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~ 143 (213)
T 4f02_A 66 QPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSK 143 (213)
T ss_dssp SHHHHHHHHHHHTTCEETTEECEEEECCCCTHHHHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEE
T ss_pred CHHHHHHHHHHhhhhhcCCcccccccccccccccccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCc
Confidence 5788999999999887543 222233221 2356799999999999999999999999999999999985 5689
Q ss_pred eEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEEeecC
Q psy1078 76 GFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHVND 112 (199)
Q Consensus 76 g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~a~~ 112 (199)
|||||+|.+.++|.+||..|||..|+|+.|.|.||.+
T Consensus 144 g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~ 180 (213)
T 4f02_A 144 GYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 180 (213)
T ss_dssp EEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred eEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCC
Confidence 9999999999999999999999999999999999875
No 107
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.83 E-value=4.8e-20 Score=149.13 Aligned_cols=135 Identities=20% Similarity=0.243 Sum_probs=113.5
Q ss_pred CchhhhHHHHhhchhcccC-CCCCccccCCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEE
Q psy1078 2 NPLTNVKNIKKLSEQELSS-GSKTSWHDQYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFI 80 (199)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV 80 (199)
+++.|..|+..+|+..+.. .....| .+..++|||+|||+.+++++|+.+|..||.|..+.++.++.+|.++|||||
T Consensus 66 ~~~~A~~A~~~l~~~~~~g~~i~v~~---~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV 142 (284)
T 3smz_A 66 NGEQAEAAINAFHQSRLRERELSVQL---QPTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFA 142 (284)
T ss_dssp SHHHHHHHHHHHTTCEETTEECEEEE---CCCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEE
T ss_pred CHHHHHHHHHHcCCCeeCCeEEEEEe---cCCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEE
Confidence 6788999999999988654 333333 356789999999999999999999999999999999999889999999999
Q ss_pred EecCHHHHHHHHHhhCCCEeCCeeEEEEeecCCCCCCCCCCChhhccceeeccCCCCC-CCCCC
Q psy1078 81 CYEDQRSTVLSVDNLNGVKVLSRTIRVDHVNDYKPPKDNKYTDEETKKLRTIGCAPGT-EFGSI 143 (199)
Q Consensus 81 ~f~~~~~a~~Ai~~lng~~i~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 143 (199)
+|.+.++|.+|+..|||..|+|+.|.|.|+.+...... ......+++++++... +++.+
T Consensus 143 ~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~~~~~~----~~~~~~l~v~nlp~~~~~~~~l 202 (284)
T 3smz_A 143 EYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAGQLTPA----LLHSRCLCVDRLPPGFNDVDAL 202 (284)
T ss_dssp EESSHHHHHHHHHHHTTCEETTEECEEEECCGGGCCTT----TTSCSEEEEECCCTTCCCHHHH
T ss_pred EECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCCCCcc----cCCccEEEEecCCcccCCHHHH
Confidence 99999999999999999999999999999976433221 2345779999999884 54433
No 108
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=4.7e-20 Score=128.23 Aligned_cols=82 Identities=20% Similarity=0.378 Sum_probs=76.0
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEE-EEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEE
Q psy1078 29 QYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVN-LNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRV 107 (199)
Q Consensus 29 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~-~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v 107 (199)
.....++|||+|||+.+++++|+.+|..||.|.. |.|+.+ .+|+++|||||+|.+.++|.+||.. |+..|+|+.|.|
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v 88 (104)
T 1wg5_A 11 DTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEI 88 (104)
T ss_dssp SCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEE
Confidence 3467789999999999999999999999999987 888888 6899999999999999999999976 999999999999
Q ss_pred EeecC
Q psy1078 108 DHVND 112 (199)
Q Consensus 108 ~~a~~ 112 (199)
.++..
T Consensus 89 ~~~~~ 93 (104)
T 1wg5_A 89 FKSSR 93 (104)
T ss_dssp EEECT
T ss_pred EECCH
Confidence 99864
No 109
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=5.8e-20 Score=127.90 Aligned_cols=80 Identities=16% Similarity=0.191 Sum_probs=71.8
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCC--CEeCCeeEE
Q psy1078 29 QYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNG--VKVLSRTIR 106 (199)
Q Consensus 29 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng--~~i~g~~l~ 106 (199)
..+++++|||+|||+.+++++|+.+|.+||.|..|.|+.+ +|||||+|.+.++|..|+..|++ ..|.|++|.
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~ 84 (104)
T 1wex_A 11 KVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAF 84 (104)
T ss_dssp CCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 3467889999999999999999999999999999998754 79999999999999999998866 459999999
Q ss_pred EEeecCCC
Q psy1078 107 VDHVNDYK 114 (199)
Q Consensus 107 v~~a~~~~ 114 (199)
|.|+....
T Consensus 85 V~~a~~~~ 92 (104)
T 1wex_A 85 FNYSTSKR 92 (104)
T ss_dssp EEECSSSS
T ss_pred EEEccCcc
Confidence 99997643
No 110
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.83 E-value=4.3e-20 Score=131.35 Aligned_cols=82 Identities=18% Similarity=0.262 Sum_probs=76.4
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhccCCC---eEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeE
Q psy1078 29 QYKDSAWIFVGGLPYDLSEGDVICIFSQYGE---IVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTI 105 (199)
Q Consensus 29 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~---i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l 105 (199)
.....++|||+|||+.+|+++|+.+|..||. |..|.|+.++. |+++|||||+|.+.++|++||. ||+..|+|+.|
T Consensus 13 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i 90 (118)
T 2db1_A 13 EGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYI 90 (118)
T ss_dssp CBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEE
Confidence 3466789999999999999999999999999 89999999975 9999999999999999999997 99999999999
Q ss_pred EEEeecC
Q psy1078 106 RVDHVND 112 (199)
Q Consensus 106 ~v~~a~~ 112 (199)
.|.++..
T Consensus 91 ~V~~a~~ 97 (118)
T 2db1_A 91 EVFKSHR 97 (118)
T ss_dssp EEEEECH
T ss_pred EEEECCH
Confidence 9999853
No 111
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.82 E-value=8.4e-20 Score=136.14 Aligned_cols=109 Identities=25% Similarity=0.466 Sum_probs=95.1
Q ss_pred CchhhhHHHHhhchhcccC-CCCCcccc---CCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceE
Q psy1078 2 NPLTNVKNIKKLSEQELSS-GSKTSWHD---QYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGF 77 (199)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~ 77 (199)
+++.|.+|+..+++..+.. .....|.. .....++|||+|||+.+++++|+.+|++||.|..+.++++..+|.++||
T Consensus 54 ~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~ 133 (168)
T 1b7f_A 54 SEMDSQRAIKVLNGITVRNKRLKVSYARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGV 133 (168)
T ss_dssp SHHHHHHHHHHHTTCEETTEECEEEECCCCSSTTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEE
T ss_pred CHHHHHHHHHhcCCCEeCCcEEEEEecCCCcccCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceE
Confidence 6788999999999887553 22333322 2356789999999999999999999999999999999999888999999
Q ss_pred EEEEecCHHHHHHHHHhhCCCEeCC--eeEEEEee
Q psy1078 78 CFICYEDQRSTVLSVDNLNGVKVLS--RTIRVDHV 110 (199)
Q Consensus 78 afV~f~~~~~a~~Ai~~lng~~i~g--~~l~v~~a 110 (199)
|||+|.+.++|.+|+..|||..|.| ++|.|.||
T Consensus 134 afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 134 AFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp EEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred EEEEECCHHHHHHHHHHhcCCEecCCCeEEEEEeC
Confidence 9999999999999999999999988 99999986
No 112
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=5.1e-20 Score=126.71 Aligned_cols=81 Identities=25% Similarity=0.493 Sum_probs=74.8
Q ss_pred ccCCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEE
Q psy1078 27 HDQYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIR 106 (199)
Q Consensus 27 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~ 106 (199)
.....+.++|||+|||+.+++++|+.+|.+||.|..|.++++ +|||||+|.+.++|.+|+..|||..|.|+.|.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~ 82 (99)
T 2cpj_A 9 EKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLR 82 (99)
T ss_dssp SCCCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCE
T ss_pred CCcCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEE
Confidence 345578899999999999999999999999999999999854 69999999999999999999999999999999
Q ss_pred EEeecCC
Q psy1078 107 VDHVNDY 113 (199)
Q Consensus 107 v~~a~~~ 113 (199)
|.|+.+.
T Consensus 83 v~~a~~~ 89 (99)
T 2cpj_A 83 VRFACHS 89 (99)
T ss_dssp EEESSCC
T ss_pred EEEcCCC
Confidence 9999763
No 113
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=4.5e-20 Score=131.23 Aligned_cols=80 Identities=23% Similarity=0.338 Sum_probs=72.9
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCC--CEeCCeeEE
Q psy1078 29 QYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNG--VKVLSRTIR 106 (199)
Q Consensus 29 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng--~~i~g~~l~ 106 (199)
..+++++|||+|||+.+++++|+.+|++||.|..|.|+.+ +|||||+|.+.++|.+|+..|++ ..|.|++|+
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~ 100 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 100 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEE
Confidence 3467889999999999999999999999999999999865 79999999999999999998874 689999999
Q ss_pred EEeecCCC
Q psy1078 107 VDHVNDYK 114 (199)
Q Consensus 107 v~~a~~~~ 114 (199)
|.|+.+..
T Consensus 101 V~~a~~k~ 108 (119)
T 2ad9_A 101 IQFSNHKE 108 (119)
T ss_dssp EEECSSSS
T ss_pred EEEccCCC
Confidence 99997643
No 114
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=7.3e-20 Score=126.95 Aligned_cols=83 Identities=16% Similarity=0.263 Sum_probs=76.1
Q ss_pred cCCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEE
Q psy1078 28 DQYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRV 107 (199)
Q Consensus 28 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v 107 (199)
......++|||+|||+.+|+++|+.+|..||.+ .|.|++++ +|+++|||||+|.+.++|++|| .+|+..|+|+.|.|
T Consensus 10 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V 86 (102)
T 1wez_A 10 FQSTTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAM-AKDKANMQHRYVEL 86 (102)
T ss_dssp CCCSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHH-TTSSCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHH-HhCCCeECCcEEEE
Confidence 345677899999999999999999999999954 99999997 8999999999999999999999 68999999999999
Q ss_pred EeecCC
Q psy1078 108 DHVNDY 113 (199)
Q Consensus 108 ~~a~~~ 113 (199)
.++.+.
T Consensus 87 ~~~~~~ 92 (102)
T 1wez_A 87 FLNSTA 92 (102)
T ss_dssp EEECCC
T ss_pred EECCCC
Confidence 998753
No 115
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.82 E-value=3e-20 Score=130.81 Aligned_cols=84 Identities=14% Similarity=0.114 Sum_probs=72.9
Q ss_pred ccccCCCCCcEEEEeCCCCCCCHHHHHHHhccCC-CeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCe
Q psy1078 25 SWHDQYKDSAWIFVGGLPYDLSEGDVICIFSQYG-EIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSR 103 (199)
Q Consensus 25 ~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G-~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~ 103 (199)
.+....+..++|||+|||+.+++++|+.+|..|| .|..+.|+. +.++|||||+|.+.++|++||..|||..|+|+
T Consensus 20 ~~~~~p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr 95 (111)
T 2jvr_A 20 HMSKLPAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT----RDFDGTGALEFPSEEILVEALERLNNIEFRGS 95 (111)
T ss_dssp -----CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS----CSSSCCEEEEESSHHHHHHHHHHTTTEEETTE
T ss_pred hcCCCCCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCCEECCe
Confidence 3444556778999999999999999999999999 899998853 34789999999999999999999999999999
Q ss_pred eEEEEeecC
Q psy1078 104 TIRVDHVND 112 (199)
Q Consensus 104 ~l~v~~a~~ 112 (199)
.|.|.++..
T Consensus 96 ~i~V~~a~~ 104 (111)
T 2jvr_A 96 VITVERDDN 104 (111)
T ss_dssp EEEEEESCC
T ss_pred EEEEEECCC
Confidence 999999864
No 116
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.82 E-value=3.6e-21 Score=132.98 Aligned_cols=81 Identities=20% Similarity=0.312 Sum_probs=74.4
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEEee
Q psy1078 31 KDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHV 110 (199)
Q Consensus 31 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~a 110 (199)
...++|||+|||+.+++++|+.+|..||.|.. .++.+..+|.++|||||+|.+.++|.+||. |||..|.|+.|.|.|+
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 92 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEc
Confidence 46789999999999999999999999999887 566666678999999999999999999998 9999999999999999
Q ss_pred cCC
Q psy1078 111 NDY 113 (199)
Q Consensus 111 ~~~ 113 (199)
.+.
T Consensus 93 ~~~ 95 (101)
T 1fj7_A 93 KGR 95 (101)
T ss_dssp SCC
T ss_pred CCC
Confidence 764
No 117
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.82 E-value=5.3e-20 Score=136.74 Aligned_cols=104 Identities=17% Similarity=0.329 Sum_probs=91.1
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEEeecCC
Q psy1078 34 AWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHVNDY 113 (199)
Q Consensus 34 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~a~~~ 113 (199)
++|||+|||+.+++++|+.+|+.||.|..|.++.++ +|.++|||||+|.+.++|.+|+..|||..|.|+.|.|.|+.+.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 589999999999999999999999999999999886 6889999999999999999999999999999999999998764
Q ss_pred CCCCCCCCChhhccceeeccCCCCCCCCCC
Q psy1078 114 KPPKDNKYTDEETKKLRTIGCAPGTEFGSI 143 (199)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (199)
.... ......+++++++..+++..+
T Consensus 80 ~~~~-----~~~~~~l~v~nl~~~~t~~~l 104 (166)
T 3md3_A 80 QQSS-----SDDTFNLFVGDLNVNVDDETL 104 (166)
T ss_dssp CCCC-----CTTCEEEEEESCCTTCCHHHH
T ss_pred CCCC-----CCCCceEEECCCCCCCCHHHH
Confidence 4322 334568999999988876554
No 118
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.82 E-value=8.5e-20 Score=135.74 Aligned_cols=109 Identities=29% Similarity=0.484 Sum_probs=94.2
Q ss_pred CchhhhHHHHhhchhcccC-CCCCcccc---CCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceE
Q psy1078 2 NPLTNVKNIKKLSEQELSS-GSKTSWHD---QYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGF 77 (199)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~ 77 (199)
+++.|..|+..+|+..+.. .....|.. .....++|||+|||+.+++++|+.+|.+||.|..+.++.+..+|.++||
T Consensus 53 ~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~ 132 (167)
T 1fxl_A 53 DPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGV 132 (167)
T ss_dssp SHHHHHHHHHHHTTCEETTEECEEEECCCCCGGGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEE
T ss_pred CHHHHHHHHHHcCCCccCCceEEEEecCCCcccCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccce
Confidence 6789999999999987543 22333332 2345689999999999999999999999999999999999888999999
Q ss_pred EEEEecCHHHHHHHHHhhCCCEeCCee--EEEEee
Q psy1078 78 CFICYEDQRSTVLSVDNLNGVKVLSRT--IRVDHV 110 (199)
Q Consensus 78 afV~f~~~~~a~~Ai~~lng~~i~g~~--l~v~~a 110 (199)
|||+|.+.++|.+|+..|||..|.|+. |.|.||
T Consensus 133 afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 133 GFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp EEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred EEEEeCCHHHHHHHHHHhcCCccCCCccceEEEeC
Confidence 999999999999999999999999975 888886
No 119
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=1.5e-19 Score=124.92 Aligned_cols=84 Identities=21% Similarity=0.326 Sum_probs=76.2
Q ss_pred cCCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEE
Q psy1078 28 DQYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRV 107 (199)
Q Consensus 28 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v 107 (199)
......++|||+|||+.+++++|+.+|..|+ .|.++.++.++.++|||||+|.+.++|.+||..|||..|.|+.|.|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 86 (102)
T 2fc8_A 10 ARSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTL 86 (102)
T ss_dssp SSSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 3456788999999999999999999999874 6778888788999999999999999999999999999999999999
Q ss_pred EeecCCC
Q psy1078 108 DHVNDYK 114 (199)
Q Consensus 108 ~~a~~~~ 114 (199)
.|+.+..
T Consensus 87 ~~a~~~~ 93 (102)
T 2fc8_A 87 DWAKPKG 93 (102)
T ss_dssp EECCCCC
T ss_pred EEecCCC
Confidence 9997643
No 120
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=1e-19 Score=121.59 Aligned_cols=77 Identities=25% Similarity=0.415 Sum_probs=71.6
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhh-CCCEeCCeeEEE
Q psy1078 29 QYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL-NGVKVLSRTIRV 107 (199)
Q Consensus 29 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l-ng~~i~g~~l~v 107 (199)
.....++|||+|||+.+++++|+.+|.+||.|..|.++++ +|||||+|.+.++|..|+..| +|..|+|+.|.|
T Consensus 8 ~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v 81 (85)
T 2ytc_A 8 EDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNV 81 (85)
T ss_dssp SCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCE
T ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEE
Confidence 3467789999999999999999999999999999999864 799999999999999999989 999999999999
Q ss_pred Eeec
Q psy1078 108 DHVN 111 (199)
Q Consensus 108 ~~a~ 111 (199)
.|++
T Consensus 82 ~~ak 85 (85)
T 2ytc_A 82 KWGR 85 (85)
T ss_dssp EECC
T ss_pred EecC
Confidence 9973
No 121
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=1.9e-19 Score=125.93 Aligned_cols=78 Identities=22% Similarity=0.267 Sum_probs=72.7
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCC-----ee
Q psy1078 30 YKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLS-----RT 104 (199)
Q Consensus 30 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g-----~~ 104 (199)
....++|||+|||+.+++++|+.+|..||.|..|.|+.+ |||||+|.+.++|++||..|||..|.| +.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~ 84 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAY 84 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceE
Confidence 456789999999999999999999999999999999865 899999999999999999999999999 99
Q ss_pred EEEEeecCCC
Q psy1078 105 IRVDHVNDYK 114 (199)
Q Consensus 105 l~v~~a~~~~ 114 (199)
|.|.++.+..
T Consensus 85 i~V~~a~~~~ 94 (108)
T 1x4c_A 85 IRVKVDGPRS 94 (108)
T ss_dssp EEEEESSCCS
T ss_pred EEEEeCCCCC
Confidence 9999998643
No 122
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.82 E-value=1.3e-20 Score=125.12 Aligned_cols=73 Identities=32% Similarity=0.438 Sum_probs=68.0
Q ss_pred CcEEEEeCCCCCC------CHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCe-eE
Q psy1078 33 SAWIFVGGLPYDL------SEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSR-TI 105 (199)
Q Consensus 33 ~~~l~V~nLp~~~------te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~-~l 105 (199)
+++|||+|||+.+ ++++|+.+|++||.|..|.|+ +.+|.++|||||+|.+.++|.+|+..|||..|+|+ +|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 4789999999999 779999999999999999988 35799999999999999999999999999999999 88
Q ss_pred EE
Q psy1078 106 RV 107 (199)
Q Consensus 106 ~v 107 (199)
+|
T Consensus 79 ~V 80 (81)
T 2krb_A 79 RV 80 (81)
T ss_dssp CC
T ss_pred Ee
Confidence 76
No 123
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=1.5e-19 Score=122.28 Aligned_cols=77 Identities=23% Similarity=0.500 Sum_probs=72.3
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEEe
Q psy1078 30 YKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDH 109 (199)
Q Consensus 30 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~ 109 (199)
..+.++|||+|||+.+++++|+.+|.+||.|..|.++ +|||||+|.+.++|.+|+..|||..|.|+.|+|.|
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 76 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEA 76 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEE
Confidence 4678899999999999999999999999999999987 68999999999999999999999999999999999
Q ss_pred ecCCC
Q psy1078 110 VNDYK 114 (199)
Q Consensus 110 a~~~~ 114 (199)
+.+..
T Consensus 77 a~~~~ 81 (90)
T 2dnq_A 77 SKNKS 81 (90)
T ss_dssp SSCCC
T ss_pred CCCCC
Confidence 97644
No 124
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=2.2e-20 Score=133.91 Aligned_cols=82 Identities=16% Similarity=0.271 Sum_probs=75.4
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEEe
Q psy1078 30 YKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDH 109 (199)
Q Consensus 30 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~ 109 (199)
....++|||+|||+.+++++|+.+|..||.|..+.++.+..+|.++|||||+|.+.++|.+||. |||..|+|+.|.|.+
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~ 100 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHP 100 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 4567899999999999999999999999999886666666789999999999999999999998 999999999999999
Q ss_pred ecC
Q psy1078 110 VND 112 (199)
Q Consensus 110 a~~ 112 (199)
+..
T Consensus 101 a~~ 103 (124)
T 1wel_A 101 ITK 103 (124)
T ss_dssp ECH
T ss_pred CCH
Confidence 864
No 125
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.82 E-value=5.5e-20 Score=129.86 Aligned_cols=80 Identities=25% Similarity=0.467 Sum_probs=74.5
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEEe
Q psy1078 30 YKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDH 109 (199)
Q Consensus 30 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~ 109 (199)
...+++|||+|||+.+++++|+.+|+.||.|..|.|+.+ +.++|||||+|.+.++|.+|+..|||..|+|+.|.|.|
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 81 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLY 81 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 456789999999999999999999999999999999865 56699999999999999999999999999999999999
Q ss_pred ecC
Q psy1078 110 VND 112 (199)
Q Consensus 110 a~~ 112 (199)
+.+
T Consensus 82 a~~ 84 (115)
T 3lqv_A 82 YNA 84 (115)
T ss_dssp CCH
T ss_pred ecC
Confidence 875
No 126
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.5e-19 Score=126.57 Aligned_cols=79 Identities=16% Similarity=0.424 Sum_probs=73.9
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEEe
Q psy1078 30 YKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDH 109 (199)
Q Consensus 30 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~ 109 (199)
....++|||+|||+.+++++|+.+|..||.|..|.|+.+ +|||||+|.+.++|.+|+..|||..|+|+.|.|.|
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 95 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYW 95 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEe
Confidence 456789999999999999999999999999999999865 79999999999999999999999999999999999
Q ss_pred ecCCC
Q psy1078 110 VNDYK 114 (199)
Q Consensus 110 a~~~~ 114 (199)
+.+..
T Consensus 96 a~~~~ 100 (109)
T 1x4g_A 96 GKESP 100 (109)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 97643
No 127
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.81 E-value=4.1e-20 Score=145.93 Aligned_cols=81 Identities=20% Similarity=0.365 Sum_probs=76.6
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCC--CeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEEe
Q psy1078 32 DSAWIFVGGLPYDLSEGDVICIFSQYG--EIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDH 109 (199)
Q Consensus 32 ~~~~l~V~nLp~~~te~~L~~~F~~~G--~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~ 109 (199)
..++|||+|||+.+|+++|+.+|..|| .|..|.|++++.+|+++|||||+|.+.++|.+||..|||..|.|+.|.|.|
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567899999999999999999999999 999999999998999999999999999999999999999999999999999
Q ss_pred ecC
Q psy1078 110 VND 112 (199)
Q Consensus 110 a~~ 112 (199)
+.+
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 864
No 128
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.81 E-value=4.8e-20 Score=134.28 Aligned_cols=83 Identities=16% Similarity=0.221 Sum_probs=77.0
Q ss_pred cCCCCCcEEEEeCCCCCCCHHHHHHHhccCCC---eEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCee
Q psy1078 28 DQYKDSAWIFVGGLPYDLSEGDVICIFSQYGE---IVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRT 104 (199)
Q Consensus 28 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~---i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~ 104 (199)
....+.++|||+|||+.+|+++|+.+|..||. |..|.|++++. |+++|||||+|.+.++|++||. ||+..|+|+.
T Consensus 39 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~ 116 (136)
T 2hgl_A 39 PEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRY 116 (136)
T ss_dssp SSCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEE
Confidence 34567889999999999999999999999999 88999999975 9999999999999999999997 9999999999
Q ss_pred EEEEeecC
Q psy1078 105 IRVDHVND 112 (199)
Q Consensus 105 l~v~~a~~ 112 (199)
|.|.++.+
T Consensus 117 i~V~~a~~ 124 (136)
T 2hgl_A 117 IEVFKSHR 124 (136)
T ss_dssp EEEEECCH
T ss_pred EEEEECCh
Confidence 99999853
No 129
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=3.1e-19 Score=121.18 Aligned_cols=78 Identities=18% Similarity=0.371 Sum_probs=72.3
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEE
Q psy1078 29 QYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVD 108 (199)
Q Consensus 29 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~ 108 (199)
.....++|||+|||+.+++++|+.+|.+||.|..|.++ ++||||+|.+.++|.+|+..|||..|.|+.|.|.
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 77 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV--------KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 77 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC--------SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE--------CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Confidence 45678899999999999999999999999999999987 4599999999999999999999999999999999
Q ss_pred eecCCC
Q psy1078 109 HVNDYK 114 (199)
Q Consensus 109 ~a~~~~ 114 (199)
|+.+..
T Consensus 78 ~a~~~~ 83 (92)
T 2dgt_A 78 LSTSRL 83 (92)
T ss_dssp ESSCCC
T ss_pred EccCCC
Confidence 997643
No 130
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.81 E-value=1.4e-19 Score=135.75 Aligned_cols=109 Identities=15% Similarity=0.320 Sum_probs=91.4
Q ss_pred CchhhhHHHHhhchhccc----CCCCCccc----cCCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCC
Q psy1078 2 NPLTNVKNIKKLSEQELS----SGSKTSWH----DQYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGK 73 (199)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~----~~~~~~~~----~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~ 73 (199)
+++.|..|+..+|+..+. ......+. ......++|||+|||+.+++++|+.+|..||.|..+.++.++ +|.
T Consensus 56 ~~~~A~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~ 134 (175)
T 3nmr_A 56 TRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGL 134 (175)
T ss_dssp SHHHHHHHHHHHTTTCCCTTCSSCCEEEECGGGCCSCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSC
T ss_pred CHHHHHHHHHHhcCcEEccCCccceEEccccccccccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCC
Confidence 678899999999987643 22211111 222367899999999999999999999999999999999986 699
Q ss_pred cceEEEEEecCHHHHHHHHHhhCCCEeC---CeeEEEEeec
Q psy1078 74 SKGFCFICYEDQRSTVLSVDNLNGVKVL---SRTIRVDHVN 111 (199)
Q Consensus 74 ~~g~afV~f~~~~~a~~Ai~~lng~~i~---g~~l~v~~a~ 111 (199)
++|||||+|.+.++|.+|+..|||..+. |++|.|.||.
T Consensus 135 ~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 135 SRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEECC
T ss_pred EEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEecC
Confidence 9999999999999999999999998776 4999999973
No 131
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=5.4e-19 Score=121.54 Aligned_cols=78 Identities=17% Similarity=0.305 Sum_probs=71.7
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhccC--CCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEE
Q psy1078 29 QYKDSAWIFVGGLPYDLSEGDVICIFSQY--GEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIR 106 (199)
Q Consensus 29 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~--G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~ 106 (199)
.....++|||+|||+.+++++|+.+|.+| |.|..|.++ +|||||+|.+.++|.+||..|||..|.|+.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (99)
T 2cpd_A 11 TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIE 82 (99)
T ss_dssp CSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEE
T ss_pred ccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEE
Confidence 44678899999999999999999999999 999998774 68999999999999999999999999999999
Q ss_pred EEeecCCC
Q psy1078 107 VDHVNDYK 114 (199)
Q Consensus 107 v~~a~~~~ 114 (199)
|.|+.+..
T Consensus 83 v~~a~~~~ 90 (99)
T 2cpd_A 83 VTLAKPVD 90 (99)
T ss_dssp EECCCCCC
T ss_pred EEECCCCC
Confidence 99997643
No 132
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.81 E-value=6.4e-20 Score=125.58 Aligned_cols=81 Identities=17% Similarity=0.433 Sum_probs=74.7
Q ss_pred CCCCcEEEEeCCCCCCCHHHHH----HHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeE
Q psy1078 30 YKDSAWIFVGGLPYDLSEGDVI----CIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTI 105 (199)
Q Consensus 30 ~~~~~~l~V~nLp~~~te~~L~----~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l 105 (199)
.+++++|||+|||+.+++++|+ .+|.+||.|..|.++. +|.++|||||+|.+.++|..|+..|||..|+|+.|
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 81 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEE
Confidence 4677899999999999999999 9999999999998873 57889999999999999999999999999999999
Q ss_pred EEEeecCC
Q psy1078 106 RVDHVNDY 113 (199)
Q Consensus 106 ~v~~a~~~ 113 (199)
.|.|+.+.
T Consensus 82 ~v~~a~~~ 89 (97)
T 1nu4_A 82 RIQYAKTD 89 (97)
T ss_dssp EEEECSSC
T ss_pred EEEEccCC
Confidence 99999763
No 133
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.81 E-value=2.4e-19 Score=123.14 Aligned_cols=78 Identities=22% Similarity=0.459 Sum_probs=71.2
Q ss_pred ccCCCCCcEEEEeCCCC-CCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeE
Q psy1078 27 HDQYKDSAWIFVGGLPY-DLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTI 105 (199)
Q Consensus 27 ~~~~~~~~~l~V~nLp~-~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l 105 (199)
....+++++|||+|||+ .+++++|+.+|+.||.|..|.+. +|||||+|.+.++|.+|+..|||..|+|+.|
T Consensus 16 ~~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 87 (97)
T 2xnq_A 16 PRGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKL 87 (97)
T ss_dssp ---CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEEC
T ss_pred cCCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 34457889999999998 99999999999999999999883 7999999999999999999999999999999
Q ss_pred EEEeecC
Q psy1078 106 RVDHVND 112 (199)
Q Consensus 106 ~v~~a~~ 112 (199)
.|.|+.+
T Consensus 88 ~V~~a~~ 94 (97)
T 2xnq_A 88 ILEVSSS 94 (97)
T ss_dssp EEEECCC
T ss_pred EEEecCC
Confidence 9999865
No 134
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.81 E-value=1.5e-20 Score=140.26 Aligned_cols=109 Identities=25% Similarity=0.413 Sum_probs=91.7
Q ss_pred CchhhhHHHHh---hchhcccCCCCCccccCCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEE
Q psy1078 2 NPLTNVKNIKK---LSEQELSSGSKTSWHDQYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFC 78 (199)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~a 78 (199)
+++.|..|+.. ++++.+........ ......++|||+|||+.+++++|+.+|+.||.|..+.++.++.+|.++|||
T Consensus 54 ~~~~a~~A~~~~~~~~g~~i~v~~~~~~-~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~a 132 (167)
T 2cjk_A 54 KPSSVDEVVKTQHILDGKVIDPKRAIPR-DEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFG 132 (167)
T ss_dssp STHHHHHHHHSCCEETTEECCCEECCCH-HHHHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEE
T ss_pred cHHHHHHHHhcccccCCeEcccccccch-hhccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEE
Confidence 56788888886 55555544222111 122456799999999999999999999999999999999998889999999
Q ss_pred EEEecCHHHHHHHHHhhCCCEeCCeeEEEEeecC
Q psy1078 79 FICYEDQRSTVLSVDNLNGVKVLSRTIRVDHVND 112 (199)
Q Consensus 79 fV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~a~~ 112 (199)
||+|.+.++|.+|+. ++|..|+|+.|.|.||.+
T Consensus 133 fV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~p 165 (167)
T 2cjk_A 133 FVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAEP 165 (167)
T ss_dssp EEEESSHHHHHHHHH-CSEECSSSSCEEEEECCC
T ss_pred EEEECCHHHHHHHHh-CCCEEeCCeEEEEeecCC
Confidence 999999999999996 899999999999999975
No 135
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=1.5e-19 Score=123.92 Aligned_cols=78 Identities=23% Similarity=0.429 Sum_probs=72.5
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeC--CeeEEE
Q psy1078 30 YKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVL--SRTIRV 107 (199)
Q Consensus 30 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~--g~~l~v 107 (199)
..+.++|||+|||+.+++++|+.+|.+||.|..|.++.+ +|||||+|.+.++|++|+..|||..|. |+.|+|
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V 87 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRV 87 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEE
Confidence 456789999999999999999999999999999998754 689999999999999999999999999 999999
Q ss_pred EeecCC
Q psy1078 108 DHVNDY 113 (199)
Q Consensus 108 ~~a~~~ 113 (199)
.|+.+.
T Consensus 88 ~~a~~~ 93 (97)
T 1why_A 88 DFAKSG 93 (97)
T ss_dssp EECCCC
T ss_pred EECCCC
Confidence 999764
No 136
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=2e-19 Score=121.56 Aligned_cols=78 Identities=21% Similarity=0.410 Sum_probs=72.1
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEE
Q psy1078 29 QYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVD 108 (199)
Q Consensus 29 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~ 108 (199)
.....++|||+|||+.+++++|+.+|.+||.|..|.|+ ++||||+|.+.++|.+|+..|||..|+|+.|.|.
T Consensus 5 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 76 (90)
T 2dnp_A 5 SSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV--------KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVE 76 (90)
T ss_dssp SSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 45677899999999999999999999999999999987 4599999999999999999999999999999999
Q ss_pred eecCCC
Q psy1078 109 HVNDYK 114 (199)
Q Consensus 109 ~a~~~~ 114 (199)
|+.+..
T Consensus 77 ~a~~~~ 82 (90)
T 2dnp_A 77 LSTKGQ 82 (90)
T ss_dssp ESCCCC
T ss_pred ECCCCC
Confidence 997643
No 137
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.81 E-value=1.4e-20 Score=122.92 Aligned_cols=75 Identities=28% Similarity=0.475 Sum_probs=71.4
Q ss_pred EEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEEee
Q psy1078 35 WIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHV 110 (199)
Q Consensus 35 ~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~a 110 (199)
+|||+|||+.+++++|+.+|++||.|..+.++.++.+|.++|||||+|.+.++|.+|+. +++..|+|+.|.|.+|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 59999999999999999999999999999999998889999999999999999999996 5899999999999885
No 138
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=1.5e-19 Score=124.00 Aligned_cols=80 Identities=24% Similarity=0.355 Sum_probs=72.4
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEE
Q psy1078 29 QYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVD 108 (199)
Q Consensus 29 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~ 108 (199)
.....++|||+|||+.+++++|+.+|..||.|. +.++. +.++|||||+|.+.++|++|+..|||..|+|+.|.|.
T Consensus 15 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~----~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 89 (97)
T 2e5j_A 15 GAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTW----QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVA 89 (97)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEE----ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEc----CCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 345678999999999999999999999999997 66654 4678999999999999999999999999999999999
Q ss_pred eecCC
Q psy1078 109 HVNDY 113 (199)
Q Consensus 109 ~a~~~ 113 (199)
|+.+.
T Consensus 90 ~a~~~ 94 (97)
T 2e5j_A 90 LARQQ 94 (97)
T ss_dssp ECCCC
T ss_pred EcCCC
Confidence 99764
No 139
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.81 E-value=9.6e-20 Score=125.72 Aligned_cols=77 Identities=22% Similarity=0.459 Sum_probs=71.7
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEEe
Q psy1078 30 YKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDH 109 (199)
Q Consensus 30 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~ 109 (199)
.+..++|||+|||+.+++++|+.+|..||.|..+.+++ ++|||||+|.+.++|..|+..|||..|+|+.|+|.|
T Consensus 24 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 97 (101)
T 2la4_A 24 PPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP------EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGW 97 (101)
T ss_dssp CSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCB
T ss_pred CCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEe
Confidence 35578999999999999999999999999999999973 479999999999999999999999999999999999
Q ss_pred ecC
Q psy1078 110 VND 112 (199)
Q Consensus 110 a~~ 112 (199)
+.+
T Consensus 98 a~~ 100 (101)
T 2la4_A 98 GKE 100 (101)
T ss_dssp CCC
T ss_pred ccC
Confidence 864
No 140
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.81 E-value=6.2e-20 Score=126.91 Aligned_cols=80 Identities=20% Similarity=0.481 Sum_probs=75.7
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEEee
Q psy1078 31 KDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHV 110 (199)
Q Consensus 31 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~a 110 (199)
...++|||+|||+.+++++|+.+|+.||.|..|.|+.++ +|.++|||||+|.+.++|.+|+. ++..|+|+.|.|.++
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a 83 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPA 83 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEEC
Confidence 456899999999999999999999999999999999998 99999999999999999999996 999999999999999
Q ss_pred cCC
Q psy1078 111 NDY 113 (199)
Q Consensus 111 ~~~ 113 (199)
.+.
T Consensus 84 ~~~ 86 (102)
T 2xs2_A 84 IRK 86 (102)
T ss_dssp EEC
T ss_pred CcC
Confidence 753
No 141
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.81 E-value=2.1e-19 Score=125.87 Aligned_cols=77 Identities=19% Similarity=0.440 Sum_probs=71.9
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEE
Q psy1078 29 QYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVD 108 (199)
Q Consensus 29 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~ 108 (199)
.....++|||+|||+.+++++|+.+|.+||.|..|.++ +|||||+|.+.++|.+|+..|||..|+|+.|.|.
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 98 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVV 98 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 34678999999999999999999999999999999987 6999999999999999999999999999999999
Q ss_pred eecCC
Q psy1078 109 HVNDY 113 (199)
Q Consensus 109 ~a~~~ 113 (199)
|+.+.
T Consensus 99 ~a~~~ 103 (108)
T 2jvo_A 99 YSKLP 103 (108)
T ss_dssp SCSCC
T ss_pred EecCC
Confidence 99763
No 142
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=1.5e-19 Score=126.90 Aligned_cols=78 Identities=21% Similarity=0.418 Sum_probs=73.0
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEEee
Q psy1078 31 KDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHV 110 (199)
Q Consensus 31 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~a 110 (199)
.+..+|||+|||+.+++++|+.+|..| .|..|.|+.++ .|+++|||||+|.+.++|++|| .||+..|+|+.|.|..+
T Consensus 14 ~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a 90 (109)
T 2dnn_A 14 PDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDH-VGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPA 90 (109)
T ss_dssp HHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCT-TCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECC-CCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 345799999999999999999999999 89999999997 4999999999999999999999 79999999999999887
Q ss_pred c
Q psy1078 111 N 111 (199)
Q Consensus 111 ~ 111 (199)
.
T Consensus 91 ~ 91 (109)
T 2dnn_A 91 T 91 (109)
T ss_dssp C
T ss_pred C
Confidence 5
No 143
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.80 E-value=2.4e-20 Score=136.78 Aligned_cols=83 Identities=20% Similarity=0.383 Sum_probs=74.0
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEE--------EEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEe
Q psy1078 29 QYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNL--------NLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKV 100 (199)
Q Consensus 29 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~--------~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i 100 (199)
....+++|||+|||+.+++++|+.+|..||.|..+ .+. .+|.++|||||+|.+.++|.+||..|||..|
T Consensus 41 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~---~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~ 117 (143)
T 3egn_A 41 PGEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLM---KEGRMKGQAFIGLPNEKAAAKALKEANGYVL 117 (143)
T ss_dssp CCSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEE---EETTTEEEEEEECSSHHHHHHHHHHHTTBEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEec---cCCCcccEEEEEeCCHHHHHHHHHHhCCCEe
Confidence 35677899999999999999999999999998764 332 3689999999999999999999999999999
Q ss_pred CCeeEEEEeecCCC
Q psy1078 101 LSRTIRVDHVNDYK 114 (199)
Q Consensus 101 ~g~~l~v~~a~~~~ 114 (199)
.|+.|.|.|+.+..
T Consensus 118 ~g~~l~V~~a~~~~ 131 (143)
T 3egn_A 118 FGKPMVVQFARSAR 131 (143)
T ss_dssp TTEECEEEECCCSC
T ss_pred CCcEEEEEECCCCC
Confidence 99999999997643
No 144
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.80 E-value=1.4e-19 Score=128.94 Aligned_cols=79 Identities=16% Similarity=0.194 Sum_probs=71.8
Q ss_pred cEEEEeCC----CCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecC----HHH----HHHHHH--hhCCCE
Q psy1078 34 AWIFVGGL----PYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYED----QRS----TVLSVD--NLNGVK 99 (199)
Q Consensus 34 ~~l~V~nL----p~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~----~~~----a~~Ai~--~lng~~ 99 (199)
..|||+|| |+.+++.+|+.+|+.||+|..|.++.|+.||.++|||||+|.+ +.. |.+|+. .|||..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 57999999 9999999999999999999999999999999999999999995 322 888988 789999
Q ss_pred eCCeeEEEEeecC
Q psy1078 100 VLSRTIRVDHVND 112 (199)
Q Consensus 100 i~g~~l~v~~a~~ 112 (199)
|+|+.|+|.+-..
T Consensus 83 I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 83 IMGFKFEVILNKH 95 (136)
T ss_dssp ETTEEEEEEECCT
T ss_pred ecCcEEEEEECcc
Confidence 9999999998543
No 145
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=1.1e-19 Score=127.85 Aligned_cols=79 Identities=28% Similarity=0.371 Sum_probs=71.2
Q ss_pred CCCCcEEEEeCCCCC-CCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCC--CEeCCeeEE
Q psy1078 30 YKDSAWIFVGGLPYD-LSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNG--VKVLSRTIR 106 (199)
Q Consensus 30 ~~~~~~l~V~nLp~~-~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng--~~i~g~~l~ 106 (199)
..++++|||+|||+. +++++|+.+|.+||.|..|.|++. +|||||+|.+.++|..|+..||+ ..|.|+.|+
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM------KSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 567889999999998 999999999999999999999743 79999999999999999998864 569999999
Q ss_pred EEeecCCC
Q psy1078 107 VDHVNDYK 114 (199)
Q Consensus 107 v~~a~~~~ 114 (199)
|.|+..+.
T Consensus 96 V~~a~~~~ 103 (112)
T 1x4f_A 96 VDLSEKYK 103 (112)
T ss_dssp EEEECSCS
T ss_pred EEECcccc
Confidence 99997643
No 146
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.80 E-value=6.2e-19 Score=122.16 Aligned_cols=77 Identities=19% Similarity=0.394 Sum_probs=71.4
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEEe
Q psy1078 30 YKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDH 109 (199)
Q Consensus 30 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~ 109 (199)
....++|||+|||+.+++++|+.+|.+||.|..|.|+ ++||||+|.+.++|.+||..|||..|.|+.|.|.|
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 79 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVF 79 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEE
Confidence 3567899999999999999999999999999999886 56999999999999999999999999999999999
Q ss_pred ecCCC
Q psy1078 110 VNDYK 114 (199)
Q Consensus 110 a~~~~ 114 (199)
+.+..
T Consensus 80 a~~~~ 84 (103)
T 2dgu_A 80 AKPPD 84 (103)
T ss_dssp CCCCC
T ss_pred cCCCc
Confidence 97644
No 147
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.80 E-value=4.9e-19 Score=151.84 Aligned_cols=83 Identities=29% Similarity=0.474 Sum_probs=79.2
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEEee
Q psy1078 31 KDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHV 110 (199)
Q Consensus 31 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~a 110 (199)
...++|||+|||+.||+++|..+|.+||.|..|.|+.+..+|.++|||||+|.+.++|.+||..|||..|+|+.|.|.|+
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 45679999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred cCC
Q psy1078 111 NDY 113 (199)
Q Consensus 111 ~~~ 113 (199)
.+.
T Consensus 180 ~~~ 182 (437)
T 3pgw_S 180 RGR 182 (437)
T ss_pred CCC
Confidence 864
No 148
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.80 E-value=4.2e-20 Score=129.13 Aligned_cols=82 Identities=21% Similarity=0.322 Sum_probs=76.4
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhccCCC---eEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeE
Q psy1078 29 QYKDSAWIFVGGLPYDLSEGDVICIFSQYGE---IVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTI 105 (199)
Q Consensus 29 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~---i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l 105 (199)
.....++|||+|||+.+|+++|+.+|..||. |..|.|+.++. |.++|||||+|.+.++|.+||. ||+..|+|+.|
T Consensus 7 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i 84 (107)
T 2lmi_A 7 EVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYV 84 (107)
T ss_dssp CCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCC
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEE
Confidence 4467889999999999999999999999998 89999999975 9999999999999999999997 99999999999
Q ss_pred EEEeecC
Q psy1078 106 RVDHVND 112 (199)
Q Consensus 106 ~v~~a~~ 112 (199)
.|.++.+
T Consensus 85 ~V~~a~~ 91 (107)
T 2lmi_A 85 EVYEINN 91 (107)
T ss_dssp CCEECCH
T ss_pred EEEECCH
Confidence 9999864
No 149
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.80 E-value=1.8e-19 Score=123.41 Aligned_cols=78 Identities=22% Similarity=0.468 Sum_probs=71.0
Q ss_pred CCCCCcEEEEeCCCC-CCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEE
Q psy1078 29 QYKDSAWIFVGGLPY-DLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRV 107 (199)
Q Consensus 29 ~~~~~~~l~V~nLp~-~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v 107 (199)
..++.++|||+|||+ .+++++|+.+|.+||.|..|.|. +|||||+|.+.++|..|+..|||..|.|+.|.|
T Consensus 6 ~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 77 (96)
T 2kvi_A 6 NIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLIL 77 (96)
T ss_dssp ---CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCE
T ss_pred cCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 356789999999999 99999999999999999999884 689999999999999999999999999999999
Q ss_pred EeecCCC
Q psy1078 108 DHVNDYK 114 (199)
Q Consensus 108 ~~a~~~~ 114 (199)
.|+.+..
T Consensus 78 ~~a~~~~ 84 (96)
T 2kvi_A 78 EVSSSNA 84 (96)
T ss_dssp EEEECCC
T ss_pred EEcCcCC
Confidence 9997644
No 150
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.80 E-value=2.7e-19 Score=134.15 Aligned_cols=107 Identities=28% Similarity=0.475 Sum_probs=92.3
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCC--CcceEEEEEecCHHHHHHHHHhhCCCEeC---CeeE
Q psy1078 31 KDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITG--KSKGFCFICYEDQRSTVLSVDNLNGVKVL---SRTI 105 (199)
Q Consensus 31 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g--~~~g~afV~f~~~~~a~~Ai~~lng~~i~---g~~l 105 (199)
.++++|||+|||+.+++++|+.+|.+||.|..|.|++++.+| .++|||||+|.+.++|.+|+..|||..+. ++.|
T Consensus 1 s~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~ 80 (175)
T 3nmr_A 1 SDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPI 80 (175)
T ss_dssp CCCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccce
Confidence 367899999999999999999999999999999999998776 89999999999999999999999998876 6788
Q ss_pred EEEeecCCCCCCCCCCChhhccceeeccCCCCCCCCCC
Q psy1078 106 RVDHVNDYKPPKDNKYTDEETKKLRTIGCAPGTEFGSI 143 (199)
Q Consensus 106 ~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (199)
.+.++..... .......+++++++..+++..+
T Consensus 81 ~~~~~~~~~~------~~~~~~~l~v~nl~~~~t~~~l 112 (175)
T 3nmr_A 81 QMKPADSEKN------NAVEDRKLFIGMISKKCTENDI 112 (175)
T ss_dssp EEEECGGGCC------SCGGGSEEEEESCCTTCCHHHH
T ss_pred EEcccccccc------ccCCCCeEEEcCCCCcCCHHHH
Confidence 8888765332 1234578999999998876655
No 151
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.80 E-value=5.6e-19 Score=123.79 Aligned_cols=78 Identities=26% Similarity=0.490 Sum_probs=71.6
Q ss_pred CCCCCcEEEEeCCCCC-CCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEE
Q psy1078 29 QYKDSAWIFVGGLPYD-LSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRV 107 (199)
Q Consensus 29 ~~~~~~~l~V~nLp~~-~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v 107 (199)
+....++|||+|||+. +++++|+.+|.+||.|..|.| ++|||||+|.+.++|..|+..|||..|+|+.|.|
T Consensus 23 ~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 94 (110)
T 1wf1_A 23 PKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDI 94 (110)
T ss_dssp CTTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCE
T ss_pred CCCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 3445689999999999 999999999999999999988 3799999999999999999999999999999999
Q ss_pred EeecCCC
Q psy1078 108 DHVNDYK 114 (199)
Q Consensus 108 ~~a~~~~ 114 (199)
.|+.+..
T Consensus 95 ~~a~~~~ 101 (110)
T 1wf1_A 95 NMAGEPK 101 (110)
T ss_dssp EESCCCC
T ss_pred EECCCCC
Confidence 9997533
No 152
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.80 E-value=1.8e-19 Score=123.21 Aligned_cols=80 Identities=16% Similarity=0.351 Sum_probs=72.7
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEE
Q psy1078 29 QYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVD 108 (199)
Q Consensus 29 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~ 108 (199)
...+.++|||+|||+.+++++|+.+|..||.|..+ ..+|.++|||||+|.+.++|.+|+..|||..|+|+.|.|.
T Consensus 12 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 86 (96)
T 1fjc_A 12 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLY 86 (96)
T ss_dssp TTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34567899999999999999999999999988766 2368999999999999999999999999999999999999
Q ss_pred eecCC
Q psy1078 109 HVNDY 113 (199)
Q Consensus 109 ~a~~~ 113 (199)
|+.+.
T Consensus 87 ~a~~~ 91 (96)
T 1fjc_A 87 YTGEK 91 (96)
T ss_dssp ECSSS
T ss_pred EcCCC
Confidence 99764
No 153
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.68 E-value=3.7e-21 Score=136.28 Aligned_cols=85 Identities=29% Similarity=0.411 Sum_probs=79.7
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEE--------EEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEe
Q psy1078 29 QYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVN--------LNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKV 100 (199)
Q Consensus 29 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~--------~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i 100 (199)
...+.++|||+|||+.+++++|+.+|..||.|.. |.|+.++.+|.++|||||+|.+.++|.+||..|||..|
T Consensus 3 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 82 (116)
T 2lcw_A 3 DNSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 82 (116)
Confidence 3467789999999999999999999999999998 89999988899999999999999999999999999999
Q ss_pred CCeeEEEEeecCC
Q psy1078 101 LSRTIRVDHVNDY 113 (199)
Q Consensus 101 ~g~~l~v~~a~~~ 113 (199)
.|+.|.|.|+.+.
T Consensus 83 ~g~~l~V~~a~~~ 95 (116)
T 2lcw_A 83 SGNPIKVSFATRR 95 (116)
Confidence 9999999999763
No 154
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=3e-19 Score=125.66 Aligned_cols=76 Identities=12% Similarity=0.138 Sum_probs=71.0
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEEee
Q psy1078 31 KDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHV 110 (199)
Q Consensus 31 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~a 110 (199)
...++|||+|||+.+++++|+.+|.+||.|..|.|+. .+|||||+|.+.++|+.||..|||..|+|+.|.|.|+
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 81 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWA 81 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 4568999999999999999999999999999998874 4789999999999999999999999999999999999
Q ss_pred cC
Q psy1078 111 ND 112 (199)
Q Consensus 111 ~~ 112 (199)
..
T Consensus 82 ~~ 83 (111)
T 1whx_A 82 PI 83 (111)
T ss_dssp ET
T ss_pred CC
Confidence 75
No 155
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=2.9e-19 Score=122.07 Aligned_cols=80 Identities=19% Similarity=0.267 Sum_probs=72.2
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEE-EEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEE
Q psy1078 30 YKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNL-NLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVD 108 (199)
Q Consensus 30 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~-~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~ 108 (199)
....++|||+|||+.+++++|+.+|..||.|..| .|+.++.+ |.|||+|.+.++|..|+..|||..|+|+.|.|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~----~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 87 (96)
T 2e44_A 12 RQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSET----AVVNVTYSSKDQARQALDKLNGFQLENFTLKVA 87 (96)
T ss_dssp CCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSS----EEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCC----CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 3557899999999999999999999999999999 58777543 349999999999999999999999999999999
Q ss_pred eecCC
Q psy1078 109 HVNDY 113 (199)
Q Consensus 109 ~a~~~ 113 (199)
|+.+.
T Consensus 88 ~a~~~ 92 (96)
T 2e44_A 88 YIPDE 92 (96)
T ss_dssp ECCCC
T ss_pred EcCcc
Confidence 99764
No 156
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.79 E-value=6.2e-19 Score=132.57 Aligned_cols=105 Identities=15% Similarity=0.273 Sum_probs=88.0
Q ss_pred CchhhhHHHHhhchhcccC-CCCCcccc-----CCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcc
Q psy1078 2 NPLTNVKNIKKLSEQELSS-GSKTSWHD-----QYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSK 75 (199)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~-----~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~ 75 (199)
+++.|.+|+ +||+..+.. .....|.. .....++|||+|||+.+++++|+.+|..||.|..+ ..+|.++
T Consensus 63 ~~~~a~~A~-~l~g~~~~g~~l~v~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~ 136 (175)
T 1fje_B 63 SAEDLEKAL-ELTGLKVFGNEIKLEKPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSK 136 (175)
T ss_dssp SHHHHHHHH-HGGGEEETTEEEEEECCCCSSCSTTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCC
T ss_pred CHHHHHHHH-hcCCCEeCCeEEEEecCCCccccccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCc
Confidence 678899999 598887543 22222222 23456899999999999999999999999988766 3579999
Q ss_pred eEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEEeecC
Q psy1078 76 GFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHVND 112 (199)
Q Consensus 76 g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~a~~ 112 (199)
|||||+|.+.++|.+|+..|||..|+|+.|.|.|+.+
T Consensus 137 g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~ 173 (175)
T 1fje_B 137 GIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGE 173 (175)
T ss_dssp SEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSS
T ss_pred eEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCC
Confidence 9999999999999999999999999999999999875
No 157
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.79 E-value=1.5e-19 Score=146.75 Aligned_cols=136 Identities=12% Similarity=0.157 Sum_probs=102.7
Q ss_pred CchhhhHHHHhhchhcccC-CCCCccccCCCCCcEEEEeCCCCCCCHHHHHHHhccCC-CeEEEEEeecCCCCCcceEEE
Q psy1078 2 NPLTNVKNIKKLSEQELSS-GSKTSWHDQYKDSAWIFVGGLPYDLSEGDVICIFSQYG-EIVNLNLVRDKITGKSKGFCF 79 (199)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G-~i~~~~~~~~~~~g~~~g~af 79 (199)
+++.|.+|+ .+|+..+.. ..... ....++|||+|||+.+++++|+.+|..|| .|..|.|+.++ .|.++||||
T Consensus 90 ~~~~A~~A~-~~~~~~~~g~~i~v~----~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~-~~~~~g~af 163 (292)
T 2ghp_A 90 RYDGALAAI-TKTHKVVGQNEIIVS----HLTECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLR-FNTSRRFAY 163 (292)
T ss_dssp SHHHHHHHH-TTTTCEETTEECEEE----ECCSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEE
T ss_pred CHHHHHHHH-HhCCcEeCCcEEEEE----ECCCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCC-CCCcceEEE
Confidence 578899999 488877654 22222 24688999999999999999999999999 99999999886 488999999
Q ss_pred EEecCHHHHHHHHHhhCCCEeCCeeEEEEeecCCCCCCCCCCChhhccceeeccCCCC-CCCCCC
Q psy1078 80 ICYEDQRSTVLSVDNLNGVKVLSRTIRVDHVNDYKPPKDNKYTDEETKKLRTIGCAPG-TEFGSI 143 (199)
Q Consensus 80 V~f~~~~~a~~Ai~~lng~~i~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 143 (199)
|+|.+.++|.+|+..|||..|.|+.|.|.|+.+................|+++++++. +++..+
T Consensus 164 V~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l 228 (292)
T 2ghp_A 164 IDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPLEKSKRTDSATLEGREIMIRNLSTELLDENLL 228 (292)
T ss_dssp EECSSHHHHHHHHHHHTTCEETTEECEEEECCCC---------CCTTTEEEEEEECTTTCCHHHH
T ss_pred EEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCcccccccccCCCCceEEEECCCcccCCHHHH
Confidence 9999999999999999999999999999999865433322122345578999999988 775554
No 158
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.79 E-value=6.1e-19 Score=134.72 Aligned_cols=111 Identities=21% Similarity=0.276 Sum_probs=87.6
Q ss_pred CchhhhHHHHhhchhcccC-CCCCccc---------cCCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCC
Q psy1078 2 NPLTNVKNIKKLSEQELSS-GSKTSWH---------DQYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKIT 71 (199)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~-~~~~~~~---------~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~ 71 (199)
+++.|..|+.. ++..+.. .....+. ......++|||+|||+.+++++|+.+|..||.|..|.|+.++.+
T Consensus 64 ~~~~A~~A~~~-~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~ 142 (196)
T 1l3k_A 64 TVEEVDAAMNA-RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGS 142 (196)
T ss_dssp SHHHHHHHHHT-CSCEETTEECEEEECCC-----------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTT
T ss_pred CHHHHHHHHhc-CCCEECCEEeeeecccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCC
Confidence 56788888876 4433221 1111111 11234589999999999999999999999999999999999889
Q ss_pred CCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEEeecCCC
Q psy1078 72 GKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHVNDYK 114 (199)
Q Consensus 72 g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~a~~~~ 114 (199)
|.++|||||+|.+.++|.+||.. +|..|+|+.|.|.|+.+..
T Consensus 143 g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~~k~ 184 (196)
T 1l3k_A 143 GKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKALSKQ 184 (196)
T ss_dssp CCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEECC---
T ss_pred CCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEecCChh
Confidence 99999999999999999999966 8999999999999997643
No 159
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.79 E-value=3.9e-19 Score=138.04 Aligned_cols=77 Identities=19% Similarity=0.335 Sum_probs=72.1
Q ss_pred CCCcEEEEeCCC-CCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEEe
Q psy1078 31 KDSAWIFVGGLP-YDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDH 109 (199)
Q Consensus 31 ~~~~~l~V~nLp-~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~ 109 (199)
.++++|||+||| +.+++++|+.+|++||.|..|.|+.+. +|||||+|.+.++|+.||..|||..|.|+.|.|.|
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~ 76 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK-----PGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCV 76 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS-----TTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence 467899999999 899999999999999999999998653 79999999999999999999999999999999999
Q ss_pred ecC
Q psy1078 110 VND 112 (199)
Q Consensus 110 a~~ 112 (199)
+..
T Consensus 77 s~~ 79 (205)
T 3tyt_A 77 SKQ 79 (205)
T ss_dssp CSC
T ss_pred ccC
Confidence 864
No 160
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2.7e-18 Score=117.65 Aligned_cols=79 Identities=24% Similarity=0.398 Sum_probs=71.5
Q ss_pred cCCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEE
Q psy1078 28 DQYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRV 107 (199)
Q Consensus 28 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v 107 (199)
......++|||+|| .+++++|+.+|.+||.|..|.|. .++|||||+|.+.++|.+||..|||..|.|+.|.|
T Consensus 10 ~~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v 81 (97)
T 1x5p_A 10 RAPRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKV 81 (97)
T ss_dssp CCCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 34567889999996 89999999999999999999885 45799999999999999999999999999999999
Q ss_pred EeecCCC
Q psy1078 108 DHVNDYK 114 (199)
Q Consensus 108 ~~a~~~~ 114 (199)
.|+.+..
T Consensus 82 ~~a~~~~ 88 (97)
T 1x5p_A 82 NIARKQP 88 (97)
T ss_dssp ECCSSCC
T ss_pred EECCCCC
Confidence 9997643
No 161
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.79 E-value=3.5e-19 Score=135.35 Aligned_cols=81 Identities=20% Similarity=0.435 Sum_probs=77.3
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEEee
Q psy1078 31 KDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHV 110 (199)
Q Consensus 31 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~a 110 (199)
..+++|||+|||+.+++++|+.+|..||.|..|.|+.++ +|.++|||||+|.+.++|.+||..|||..|+|+.|.|.|+
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a 164 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 164 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 346899999999999999999999999999999999998 8999999999999999999999999999999999999999
Q ss_pred cC
Q psy1078 111 ND 112 (199)
Q Consensus 111 ~~ 112 (199)
..
T Consensus 165 ~~ 166 (177)
T 2f3j_A 165 AS 166 (177)
T ss_dssp SS
T ss_pred cC
Confidence 75
No 162
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.79 E-value=7.8e-20 Score=136.32 Aligned_cols=103 Identities=25% Similarity=0.457 Sum_probs=90.6
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEEeec
Q psy1078 32 DSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHVN 111 (199)
Q Consensus 32 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~a~ 111 (199)
++++|||+|||+.+++++|+.+|+.||.|..|.|++++.+|.++|||||+|.+.++|..|+.. +..++|+.|.|.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEccccccc
Confidence 568999999999999999999999999999999999988999999999999999999999974 679999999999986
Q ss_pred CCCCCCCCCCChhhccceeeccCCCCCCCCCC
Q psy1078 112 DYKPPKDNKYTDEETKKLRTIGCAPGTEFGSI 143 (199)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (199)
+.. .......+++++++..+++..+
T Consensus 80 ~~~-------~~~~~~~l~V~nlp~~~t~~~l 104 (167)
T 2cjk_A 80 PRD-------EQDKTGKIFVGGIGPDVRPKEF 104 (167)
T ss_dssp CHH-------HHHHCEEEEEEEECTTCCHHHH
T ss_pred chh-------hccCCCeEEECCCCCCCCHHHH
Confidence 421 1344568999999998876655
No 163
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=1.3e-18 Score=118.60 Aligned_cols=78 Identities=18% Similarity=0.276 Sum_probs=69.7
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEEe
Q psy1078 30 YKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDH 109 (199)
Q Consensus 30 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~ 109 (199)
....++|||+|||+.+++++|+.+|..||.|..| +.++.+|. ||||+|.+.++|.+||. |||..|+|+.|.|.+
T Consensus 5 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~ 78 (94)
T 2e5g_A 5 SSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRP 78 (94)
T ss_dssp CTTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBC
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEE
Confidence 3456799999999999999999999999999987 55555555 99999999999999998 999999999999999
Q ss_pred ecCC
Q psy1078 110 VNDY 113 (199)
Q Consensus 110 a~~~ 113 (199)
+.+.
T Consensus 79 a~~~ 82 (94)
T 2e5g_A 79 REQK 82 (94)
T ss_dssp SCCS
T ss_pred CCcC
Confidence 8653
No 164
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=5.7e-19 Score=120.00 Aligned_cols=77 Identities=19% Similarity=0.392 Sum_probs=69.2
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhccCCC-eEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCC-CEeCCeeEEE
Q psy1078 30 YKDSAWIFVGGLPYDLSEGDVICIFSQYGE-IVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNG-VKVLSRTIRV 107 (199)
Q Consensus 30 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~-i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng-~~i~g~~l~v 107 (199)
....++|||+|||+.+++++|+.+|.+||. |..+.+. ++|||||+|.+.++|.+|+..||| ..|+|+.|+|
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 77 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEV 77 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEE
Confidence 356789999999999999999999999999 5555553 379999999999999999999999 9999999999
Q ss_pred EeecCC
Q psy1078 108 DHVNDY 113 (199)
Q Consensus 108 ~~a~~~ 113 (199)
.|+.+.
T Consensus 78 ~~a~~~ 83 (93)
T 2cqh_A 78 DYSVSK 83 (93)
T ss_dssp EECCCC
T ss_pred EEccCc
Confidence 999764
No 165
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.78 E-value=1.5e-19 Score=140.15 Aligned_cols=113 Identities=21% Similarity=0.375 Sum_probs=91.8
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEEee
Q psy1078 31 KDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHV 110 (199)
Q Consensus 31 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~a 110 (199)
...++|||+|||+.+++++|+.+|..||.|..|.|++++.+|.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++
T Consensus 26 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~ 105 (216)
T 2qfj_A 26 AIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRP 105 (216)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECC
T ss_pred CcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecC
Confidence 45789999999999999999999999999999999999889999999999999999999999999999999999999997
Q ss_pred cCCCCCCCC----CCChhhccceeeccCCCCCCCCCC
Q psy1078 111 NDYKPPKDN----KYTDEETKKLRTIGCAPGTEFGSI 143 (199)
Q Consensus 111 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 143 (199)
......... .........|++++++..+++..+
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l 142 (216)
T 2qfj_A 106 SNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDI 142 (216)
T ss_dssp SCCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHH
T ss_pred CCccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHH
Confidence 653211000 000123468999999988876655
No 166
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.78 E-value=5.8e-19 Score=126.82 Aligned_cols=81 Identities=22% Similarity=0.379 Sum_probs=73.3
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeE--EEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEE
Q psy1078 29 QYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIV--NLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIR 106 (199)
Q Consensus 29 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~--~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~ 106 (199)
.....++|||+|||+.+|+++|+.+|..| .|. .|.|+.++. |+++|||||+|.+.++|.+||. +++..|+|+.|.
T Consensus 38 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~ 114 (126)
T 2hgm_A 38 DSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALG-KHKERIGHRYIE 114 (126)
T ss_dssp CSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEE
Confidence 34567899999999999999999999999 577 899999975 9999999999999999999996 578999999999
Q ss_pred EEeecC
Q psy1078 107 VDHVND 112 (199)
Q Consensus 107 v~~a~~ 112 (199)
|.++..
T Consensus 115 V~~a~~ 120 (126)
T 2hgm_A 115 VFKSSQ 120 (126)
T ss_dssp CEEECH
T ss_pred EEECCH
Confidence 998753
No 167
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.77 E-value=3.5e-18 Score=138.14 Aligned_cols=111 Identities=16% Similarity=0.198 Sum_probs=95.1
Q ss_pred CchhhhHHHHhhchhcccC-CCCCccc------cCCCCCcEEEEeCCCCCC-CHHHHHHHhccCCCeEEEEEeecCCCCC
Q psy1078 2 NPLTNVKNIKKLSEQELSS-GSKTSWH------DQYKDSAWIFVGGLPYDL-SEGDVICIFSQYGEIVNLNLVRDKITGK 73 (199)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~-~~~~~~~------~~~~~~~~l~V~nLp~~~-te~~L~~~F~~~G~i~~~~~~~~~~~g~ 73 (199)
++..|.+|+..+|+..+.. .....|. ......++|||+|||+.+ ++++|+.+|+.||.|..+.|+.++ +|.
T Consensus 146 ~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~~~~~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~ 224 (284)
T 3smz_A 146 KKDSAARAKSDLLGKPLGPRTLYVHWTDAGQLTPALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQ 224 (284)
T ss_dssp SHHHHHHHHHHHTTCEETTEECEEEECCGGGCCTTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCC
T ss_pred CHHHHHHHHHHhCCCEeCCcEEEEEECCCCCCCcccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCC
Confidence 5778999999999887543 2222222 223467899999999995 999999999999999999999986 899
Q ss_pred cceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEEeecCC
Q psy1078 74 SKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHVNDY 113 (199)
Q Consensus 74 ~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~a~~~ 113 (199)
++|||||+|.+.++|.+|+..|||..|+|+.|.|.|+.+.
T Consensus 225 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 264 (284)
T 3smz_A 225 LKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAPG 264 (284)
T ss_dssp EEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCSS
T ss_pred cccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEecCC
Confidence 9999999999999999999999999999999999999763
No 168
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.77 E-value=1.1e-18 Score=117.57 Aligned_cols=75 Identities=15% Similarity=0.200 Sum_probs=69.8
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEEee
Q psy1078 31 KDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHV 110 (199)
Q Consensus 31 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~a 110 (199)
...++|||+|||+.+++++|+.+|.+| .|..+.+. .++|||||+|.+.++|.+|+..|||..|+|+.|+|.|+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 75 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQ 75 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEc
Confidence 456789999999999999999999999 99999885 46899999999999999999999999999999999998
Q ss_pred cC
Q psy1078 111 ND 112 (199)
Q Consensus 111 ~~ 112 (199)
..
T Consensus 76 ~~ 77 (88)
T 1wg1_A 76 PT 77 (88)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 169
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.77 E-value=1.4e-18 Score=141.08 Aligned_cols=110 Identities=16% Similarity=0.212 Sum_probs=92.4
Q ss_pred CchhhhHHHHhhchhcccC-CCCCccc----------cCCCCCcEEEEeCCCCC-CCHHHHHHHhccCCCeEEEEEeecC
Q psy1078 2 NPLTNVKNIKKLSEQELSS-GSKTSWH----------DQYKDSAWIFVGGLPYD-LSEGDVICIFSQYGEIVNLNLVRDK 69 (199)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~-~~~~~~~----------~~~~~~~~l~V~nLp~~-~te~~L~~~F~~~G~i~~~~~~~~~ 69 (199)
++..|.+|+..||+..+.. .....|. ......++|||+|||+. +++++|+.+|..||.|..|.|+.+.
T Consensus 168 ~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~ 247 (292)
T 2ghp_A 168 SKEDARYCVEKLNGLKIEGYTLVTKVSNPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQ 247 (292)
T ss_dssp SHHHHHHHHHHHTTCEETTEECEEEECCCC---------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCC
T ss_pred CHHHHHHHHHHhCCCEeCCcEEEEEECCCCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecC
Confidence 5788999999999987543 2222221 12345689999999999 9999999999999999999999887
Q ss_pred C-CCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEEeecC
Q psy1078 70 I-TGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHVND 112 (199)
Q Consensus 70 ~-~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~a~~ 112 (199)
. +|.++|||||+|.+.++|.+|+ .|||..|+|+.|.|.|+.+
T Consensus 248 ~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V~~a~~ 290 (292)
T 2ghp_A 248 KEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISVSLADK 290 (292)
T ss_dssp C---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEEEECCC
T ss_pred CcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEEEEecC
Confidence 5 5999999999999999999999 9999999999999999975
No 170
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=4.8e-19 Score=126.84 Aligned_cols=81 Identities=16% Similarity=0.260 Sum_probs=73.9
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhccCCCe----EEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeE
Q psy1078 30 YKDSAWIFVGGLPYDLSEGDVICIFSQYGEI----VNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTI 105 (199)
Q Consensus 30 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i----~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l 105 (199)
..+.++|||+|||+.+|+++|+.+|..||.| ..|.|+.+. +|+++|||||+|.+.++|++||.. |+..|+|+.|
T Consensus 20 ~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i 97 (123)
T 2dha_A 20 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYI 97 (123)
T ss_dssp CCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEE
Confidence 3567899999999999999999999999986 689999985 899999999999999999999965 9999999999
Q ss_pred EEEeecC
Q psy1078 106 RVDHVND 112 (199)
Q Consensus 106 ~v~~a~~ 112 (199)
.|..+.+
T Consensus 98 ~V~~a~~ 104 (123)
T 2dha_A 98 ELFRSTA 104 (123)
T ss_dssp CCEEECH
T ss_pred EEEECCH
Confidence 9998753
No 171
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.2e-18 Score=122.75 Aligned_cols=76 Identities=21% Similarity=0.339 Sum_probs=69.5
Q ss_pred CCCcEEEE--eCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEe-----CCe
Q psy1078 31 KDSAWIFV--GGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKV-----LSR 103 (199)
Q Consensus 31 ~~~~~l~V--~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i-----~g~ 103 (199)
.++.+||| |||++.+++++|+.+|++||.|..|.|+.+ +|||||+|.+.++|++|+..|||..| .|+
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~ 96 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 96 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEEccccCCCc
Confidence 45788999 779999999999999999999999987632 79999999999999999999999998 699
Q ss_pred eEEEEeecC
Q psy1078 104 TIRVDHVND 112 (199)
Q Consensus 104 ~l~v~~a~~ 112 (199)
.|.|.|+..
T Consensus 97 ~l~v~~a~~ 105 (114)
T 2cq2_A 97 TLYLNFVEK 105 (114)
T ss_dssp ECEEEEESC
T ss_pred EEEEEeccc
Confidence 999999975
No 172
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.76 E-value=1.7e-19 Score=131.85 Aligned_cols=83 Identities=18% Similarity=0.268 Sum_probs=73.7
Q ss_pred ccCCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEE
Q psy1078 27 HDQYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIR 106 (199)
Q Consensus 27 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~ 106 (199)
.......++|||+|||+.+|+++|+.+|.+|| |..|.|+.++. |+++|||||+|.+.++|++|| .+|+..|+|+.|.
T Consensus 40 ~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~ 116 (139)
T 2hgn_A 40 TVQSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIE 116 (139)
T ss_dssp -----CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEE
Confidence 33456778999999999999999999999999 77999999974 999999999999999999999 8999999999999
Q ss_pred EEeecC
Q psy1078 107 VDHVND 112 (199)
Q Consensus 107 v~~a~~ 112 (199)
|.++.+
T Consensus 117 V~~a~~ 122 (139)
T 2hgn_A 117 LFLNST 122 (139)
T ss_dssp CEECCC
T ss_pred EEECCC
Confidence 999865
No 173
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.76 E-value=5.9e-18 Score=121.16 Aligned_cols=75 Identities=11% Similarity=0.277 Sum_probs=67.5
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceE-EEEEecCHHHHHHHHHhhCCCEeCC--eeEEEEee
Q psy1078 34 AWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGF-CFICYEDQRSTVLSVDNLNGVKVLS--RTIRVDHV 110 (199)
Q Consensus 34 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~-afV~f~~~~~a~~Ai~~lng~~i~g--~~l~v~~a 110 (199)
..|||+||++.+++++|+.+|++||.|..|.|+.. .|| |||+|.+.++|..|+..|||..|.| +.|+|.||
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~A 99 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYA 99 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECC
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEe
Confidence 45789999999999999999999999999998652 286 9999999999999999999999987 68999999
Q ss_pred cCCC
Q psy1078 111 NDYK 114 (199)
Q Consensus 111 ~~~~ 114 (199)
.+..
T Consensus 100 k~~~ 103 (124)
T 2e5i_A 100 RPTR 103 (124)
T ss_dssp SCSC
T ss_pred cCCc
Confidence 8643
No 174
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.76 E-value=8.8e-18 Score=120.92 Aligned_cols=79 Identities=22% Similarity=0.335 Sum_probs=71.2
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceE-EEEEecCHHHHHHHHHhhCCCEeCC--eeEEE
Q psy1078 31 KDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGF-CFICYEDQRSTVLSVDNLNGVKVLS--RTIRV 107 (199)
Q Consensus 31 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~-afV~f~~~~~a~~Ai~~lng~~i~g--~~l~v 107 (199)
..-.+|||+||++.+|+++|+.+|++||.|..|.++... +|| |||+|.+.++|..|+..|||..|.| +.|+|
T Consensus 26 s~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~-----~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI 100 (130)
T 3zzy_A 26 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRI 100 (130)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET-----TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEE
T ss_pred CceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEE
Confidence 344578899999999999999999999999999887653 688 9999999999999999999999988 99999
Q ss_pred EeecCCC
Q psy1078 108 DHVNDYK 114 (199)
Q Consensus 108 ~~a~~~~ 114 (199)
.|+++..
T Consensus 101 ~~ak~~~ 107 (130)
T 3zzy_A 101 DFSKLTS 107 (130)
T ss_dssp EECSCSS
T ss_pred EecCCCc
Confidence 9997643
No 175
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.75 E-value=2.8e-19 Score=134.51 Aligned_cols=108 Identities=17% Similarity=0.235 Sum_probs=89.8
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEE
Q psy1078 29 QYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVD 108 (199)
Q Consensus 29 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~ 108 (199)
...+.++|||+|||+.+++++|+.+|..||.|..+ ++.+..+|.++|||||+|.+.++|.+|+ .|||..|.|+.|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~-~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v~ 86 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDL-AVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLE 86 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTC-CCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceE-EEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEEe
Confidence 35678999999999999999999999999987662 3334457889999999999999999999 699999999999999
Q ss_pred eecCCCCCCCCCCChhhccceeeccCCCCCCCCCC
Q psy1078 109 HVNDYKPPKDNKYTDEETKKLRTIGCAPGTEFGSI 143 (199)
Q Consensus 109 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (199)
|+.+... ........+++++++..+++..+
T Consensus 87 ~~~~~~~-----~~~~~~~~l~v~nlp~~~t~~~l 116 (175)
T 1fje_B 87 KPKGRDS-----KKVRAARTLLAKNLSFNITEDEL 116 (175)
T ss_dssp CCCCSSC-----STTGGGGEEEEESCCSSCCHHHH
T ss_pred cCCCccc-----cccccCCEEEEeCCCCCCCHHHH
Confidence 9875432 12345678999999988876655
No 176
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.75 E-value=5.1e-18 Score=114.72 Aligned_cols=76 Identities=20% Similarity=0.449 Sum_probs=62.9
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCE--eCCeeEE
Q psy1078 29 QYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVK--VLSRTIR 106 (199)
Q Consensus 29 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~--i~g~~l~ 106 (199)
..+...+|||+|||+.+++++|+.+|++||.|..|.|+++ ++|||||+|.+.++|.+ |+|.. +.|+.|.
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~ 77 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVH 77 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEE
Confidence 4567789999999999999999999999999999999865 58999999999999983 45544 5699999
Q ss_pred EEeecCC
Q psy1078 107 VDHVNDY 113 (199)
Q Consensus 107 v~~a~~~ 113 (199)
|.++.+.
T Consensus 78 v~~a~~k 84 (89)
T 3d2w_A 78 ISNAEPK 84 (89)
T ss_dssp EEECC--
T ss_pred EEEcCCC
Confidence 9998753
No 177
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.75 E-value=4.8e-18 Score=133.67 Aligned_cols=80 Identities=19% Similarity=0.359 Sum_probs=74.9
Q ss_pred CCCCCcEEEEeCCCC-CCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEE
Q psy1078 29 QYKDSAWIFVGGLPY-DLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRV 107 (199)
Q Consensus 29 ~~~~~~~l~V~nLp~-~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v 107 (199)
..+++++|||+|||+ .+++++|+.+|..||.|..|.|+.++ +|||||+|.+.++|.+|+..|||..|.|+.|.|
T Consensus 30 ~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v 104 (229)
T 2adc_A 30 AGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRI 104 (229)
T ss_dssp GCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 346789999999999 99999999999999999999998775 799999999999999999999999999999999
Q ss_pred EeecCC
Q psy1078 108 DHVNDY 113 (199)
Q Consensus 108 ~~a~~~ 113 (199)
.|+...
T Consensus 105 ~~a~~~ 110 (229)
T 2adc_A 105 TLSKHQ 110 (229)
T ss_dssp ECCSCC
T ss_pred EEecCc
Confidence 999754
No 178
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=3.9e-18 Score=115.13 Aligned_cols=74 Identities=15% Similarity=0.245 Sum_probs=65.9
Q ss_pred CCCcE-EEEeCCCCCCCHHH----HHHHhccC-CCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCee
Q psy1078 31 KDSAW-IFVGGLPYDLSEGD----VICIFSQY-GEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRT 104 (199)
Q Consensus 31 ~~~~~-l~V~nLp~~~te~~----L~~~F~~~-G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~ 104 (199)
++..+ |||+|||+.+++++ |+.+|++| |.|..| +| |||||.|.+.++|.+|++.|||..|.|+.
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~ 75 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNR 75 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSC
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCce
Confidence 44555 99999999999987 55899999 599988 34 99999999999999999999999999999
Q ss_pred EEEEeecCCC
Q psy1078 105 IRVDHVNDYK 114 (199)
Q Consensus 105 l~v~~a~~~~ 114 (199)
|+|.||....
T Consensus 76 i~v~~A~~~s 85 (96)
T 2diu_A 76 IIVSFTPKNR 85 (96)
T ss_dssp CEEESSCCSC
T ss_pred EEEEecCCCc
Confidence 9999997643
No 179
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.75 E-value=8.4e-18 Score=135.77 Aligned_cols=82 Identities=18% Similarity=0.439 Sum_probs=75.8
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHH----HHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCee
Q psy1078 29 QYKDSAWIFVGGLPYDLSEGDVI----CIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRT 104 (199)
Q Consensus 29 ~~~~~~~l~V~nLp~~~te~~L~----~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~ 104 (199)
....+++|||+|||+.+++++|+ .+|..||.|..|.|++ +|.++|||||+|.+.++|.+||..|||..|.|+.
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 81 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcE
Confidence 34678999999999999999976 8999999999999875 6889999999999999999999999999999999
Q ss_pred EEEEeecCC
Q psy1078 105 IRVDHVNDY 113 (199)
Q Consensus 105 l~v~~a~~~ 113 (199)
|+|.|+...
T Consensus 82 l~v~~a~~~ 90 (282)
T 3pgw_A 82 MRIQYAKTD 90 (282)
T ss_pred EEEEEeccC
Confidence 999999654
No 180
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=2.7e-18 Score=121.16 Aligned_cols=79 Identities=22% Similarity=0.393 Sum_probs=70.1
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCC---CCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEE
Q psy1078 30 YKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKIT---GKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIR 106 (199)
Q Consensus 30 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~---g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~ 106 (199)
....++|||+|||+.+++++|+.+|.+||.|. +.++.+..+ |.++|||||+|.+.++|++||..|+ .++|+.|.
T Consensus 5 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~ 81 (114)
T 2dnl_A 5 SSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYL 81 (114)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEE
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEE
Confidence 35678999999999999999999999999999 888887766 7999999999999999999999984 47888888
Q ss_pred EEeec
Q psy1078 107 VDHVN 111 (199)
Q Consensus 107 v~~a~ 111 (199)
+..+.
T Consensus 82 ~~~~~ 86 (114)
T 2dnl_A 82 CVSSP 86 (114)
T ss_dssp EECCS
T ss_pred eccCC
Confidence 77654
No 181
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.75 E-value=4.9e-18 Score=113.71 Aligned_cols=72 Identities=17% Similarity=0.534 Sum_probs=67.3
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccC----C-------CeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCE
Q psy1078 31 KDSAWIFVGGLPYDLSEGDVICIFSQY----G-------EIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVK 99 (199)
Q Consensus 31 ~~~~~l~V~nLp~~~te~~L~~~F~~~----G-------~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~ 99 (199)
...++|||+|||+.+++++|+.+|.+| | .|..+.++++ +|||||+|.+.++|.+|+ .|||..
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~ 76 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGII 76 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCE
Confidence 457899999999999999999999999 8 8999988754 799999999999999999 999999
Q ss_pred eCCeeEEEEe
Q psy1078 100 VLSRTIRVDH 109 (199)
Q Consensus 100 i~g~~l~v~~ 109 (199)
|.|+.|+|..
T Consensus 77 ~~g~~l~V~r 86 (87)
T 2hzc_A 77 FQGQSLKIRR 86 (87)
T ss_dssp ETTEECEEEC
T ss_pred ECCeEEEEeC
Confidence 9999999975
No 182
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.74 E-value=1.2e-17 Score=128.42 Aligned_cols=80 Identities=19% Similarity=0.320 Sum_probs=73.4
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEEeecC
Q psy1078 33 SAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHVND 112 (199)
Q Consensus 33 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~a~~ 112 (199)
.++|||+|||+.+++++|+.+|++||.|..|.|+++. +|.++|||||+|.+.++|.+|+..++ ..|+|+.|.|.|+..
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLILFKDD 186 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCTT-CEETTEECEEEETTT
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhCC-CeECCEEEEEEEhHH
Confidence 4799999999999999999999999999999999986 69999999999999999999997654 699999999999876
Q ss_pred CC
Q psy1078 113 YK 114 (199)
Q Consensus 113 ~~ 114 (199)
+.
T Consensus 187 y~ 188 (193)
T 2voo_A 187 YF 188 (193)
T ss_dssp C-
T ss_pred HH
Confidence 54
No 183
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.74 E-value=3.4e-18 Score=120.95 Aligned_cols=75 Identities=23% Similarity=0.307 Sum_probs=66.4
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCee-----E
Q psy1078 31 KDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRT-----I 105 (199)
Q Consensus 31 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~-----l 105 (199)
...++|||+|||+.+++++|+.+|.+||.|..|.|+.+ |||||+|.+.++|++||..|||..|+|+. |
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i 86 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 86 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEE
Confidence 45689999999999999999999999999999999754 99999999999999999999999999998 7
Q ss_pred EEEeecC
Q psy1078 106 RVDHVND 112 (199)
Q Consensus 106 ~v~~a~~ 112 (199)
.|..+.+
T Consensus 87 ~v~~~~~ 93 (115)
T 3beg_B 87 RVKVDGP 93 (115)
T ss_dssp EEEECC-
T ss_pred EeccCCC
Confidence 7777654
No 184
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.74 E-value=1.4e-17 Score=124.21 Aligned_cols=79 Identities=20% Similarity=0.283 Sum_probs=70.9
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCC--eeEEEEe
Q psy1078 32 DSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLS--RTIRVDH 109 (199)
Q Consensus 32 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g--~~l~v~~ 109 (199)
.-.+|||+||++.+++++|+.+|++||.|..|.|... ..+|||||+|.+.++|+.|+..|||..|.| +.|+|.|
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~ 120 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDF 120 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEE
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEE
Confidence 3457999999999999999999999999999998643 257999999999999999999999999965 9999999
Q ss_pred ecCCC
Q psy1078 110 VNDYK 114 (199)
Q Consensus 110 a~~~~ 114 (199)
+.+..
T Consensus 121 Ak~~~ 125 (164)
T 1sjr_A 121 SKLTS 125 (164)
T ss_dssp CSSSS
T ss_pred ecCCc
Confidence 98743
No 185
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.73 E-value=9.1e-18 Score=134.63 Aligned_cols=96 Identities=28% Similarity=0.497 Sum_probs=85.4
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEE
Q psy1078 29 QYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVD 108 (199)
Q Consensus 29 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~ 108 (199)
.....++|||+|||+.+|+++|+.+|..||.|..|.|.++ +|||||+|.+.++|..|+..|||..|.|+.|.|.
T Consensus 18 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~ 91 (261)
T 3sde_A 18 TYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIR 91 (261)
T ss_dssp SSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCceeEee
Confidence 3466789999999999999999999999999999999654 6999999999999999999999999999999999
Q ss_pred eecCCCCCCCCCCChhhccceeeccCCCCCCCCCC
Q psy1078 109 HVNDYKPPKDNKYTDEETKKLRTIGCAPGTEFGSI 143 (199)
Q Consensus 109 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (199)
|+.+ ...++++++++.+++..+
T Consensus 92 ~a~~-------------~~~l~v~nl~~~~t~~~l 113 (261)
T 3sde_A 92 FATH-------------GAALTVKNLSPVVSNELL 113 (261)
T ss_dssp ECCC-------------SSEEEEESCCTTCCHHHH
T ss_pred eccc-------------CCcccccCCCCCCCHHHH
Confidence 9864 357899999888775544
No 186
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.73 E-value=1e-17 Score=125.35 Aligned_cols=99 Identities=17% Similarity=0.430 Sum_probs=84.7
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccC----C-------CeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCE
Q psy1078 31 KDSAWIFVGGLPYDLSEGDVICIFSQY----G-------EIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVK 99 (199)
Q Consensus 31 ~~~~~l~V~nLp~~~te~~L~~~F~~~----G-------~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~ 99 (199)
.++++|||+|||+.+++++|+.+|+.| | .|..+.+.+ ++|||||+|.+.++|.+|+ .|||..
T Consensus 2 r~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~------~~g~afV~f~~~~~A~~A~-~~~~~~ 74 (172)
T 2g4b_A 2 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ------DKNFAFLEFRSVDETTQAM-AFDGII 74 (172)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET------TTTEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CcccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC------CCCEEEEEeCCHHHHHHHH-HhCCcE
Confidence 467899999999999999999999999 6 777776653 4799999999999999999 999999
Q ss_pred eCCeeEEEEeecCCCCCCCCCCChhhccceeeccCCCCCCCCCC
Q psy1078 100 VLSRTIRVDHVNDYKPPKDNKYTDEETKKLRTIGCAPGTEFGSI 143 (199)
Q Consensus 100 i~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (199)
|.|+.|.|.++.....+ .....++++++++.++++.+
T Consensus 75 ~~g~~i~v~~~~~~~~~-------~~~~~l~v~nlp~~~t~~~l 111 (172)
T 2g4b_A 75 FQGQSLKIRRPHDYQPL-------PGAHKLFIGGLPNYLNDDQV 111 (172)
T ss_dssp ETTEECEEECCSSCCCC-------TTTTCEEEECCCTTCCHHHH
T ss_pred ecCceeeecCCcccCCC-------CCCCEEEEEcCCCcCCHHHH
Confidence 99999999998764432 22578999999998876554
No 187
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.73 E-value=3.9e-17 Score=113.73 Aligned_cols=82 Identities=15% Similarity=0.105 Sum_probs=73.1
Q ss_pred CCCcEEEEeCCCC-----CCCHHHHHHHhccCCCeEEEEEeecCCC-CCcceEEEEEecCHHHHHHHHHhhCCCEeCCee
Q psy1078 31 KDSAWIFVGGLPY-----DLSEGDVICIFSQYGEIVNLNLVRDKIT-GKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRT 104 (199)
Q Consensus 31 ~~~~~l~V~nLp~-----~~te~~L~~~F~~~G~i~~~~~~~~~~~-g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~ 104 (199)
.++++|+|.||.. .-++++|+.+|++||.|..|.|+.++.+ +.++|||||+|.+.++|.+|+..|||..++|+.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 5678999999963 2378999999999999999999988644 688999999999999999999999999999999
Q ss_pred EEEEeecC
Q psy1078 105 IRVDHVND 112 (199)
Q Consensus 105 l~v~~a~~ 112 (199)
|.|.++..
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99999853
No 188
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.73 E-value=1.1e-17 Score=128.22 Aligned_cols=77 Identities=18% Similarity=0.316 Sum_probs=71.4
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCC-CeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeC-CeeEEEE
Q psy1078 31 KDSAWIFVGGLPYDLSEGDVICIFSQYG-EIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVL-SRTIRVD 108 (199)
Q Consensus 31 ~~~~~l~V~nLp~~~te~~L~~~F~~~G-~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~-g~~l~v~ 108 (199)
+++++|||+|||+.+++++|+.+|..|| .|..+.++.+. +|||||+|.+.++|.+|+..|||..|+ |+.|.|.
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 192 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD-----RKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 192 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT-----SSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC-----CcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEE
Confidence 4478999999999999999999999999 99999996542 799999999999999999999999999 9999999
Q ss_pred eecC
Q psy1078 109 HVND 112 (199)
Q Consensus 109 ~a~~ 112 (199)
|+.+
T Consensus 193 ~a~~ 196 (198)
T 1qm9_A 193 FSKS 196 (198)
T ss_dssp EECC
T ss_pred eecc
Confidence 9875
No 189
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.73 E-value=1.8e-17 Score=133.85 Aligned_cols=75 Identities=17% Similarity=0.398 Sum_probs=70.7
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeC-CeeEEEEee
Q psy1078 32 DSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVL-SRTIRVDHV 110 (199)
Q Consensus 32 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~-g~~l~v~~a 110 (199)
.+++|||+|||+.+++++|+.+|..||.|..|.|+.++ +|||||+|.+.++|.+|+..|||..|+ |+.|+|.|+
T Consensus 206 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a 280 (282)
T 3pgw_A 206 PNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFA 280 (282)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEe
Confidence 56789999999999999999999999999999998654 689999999999999999999999999 999999998
Q ss_pred c
Q psy1078 111 N 111 (199)
Q Consensus 111 ~ 111 (199)
+
T Consensus 281 k 281 (282)
T 3pgw_A 281 K 281 (282)
T ss_pred c
Confidence 5
No 190
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.73 E-value=1.4e-17 Score=118.96 Aligned_cols=77 Identities=25% Similarity=0.412 Sum_probs=70.4
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEE
Q psy1078 29 QYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVD 108 (199)
Q Consensus 29 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~ 108 (199)
....+++|||+|| .+++++|+.+|..||.|..|.|+ .++|||||+|.+.++|.+||..|||..|.|+.|.|.
T Consensus 35 ~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~ 106 (121)
T 2bz2_A 35 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVN 106 (121)
T ss_dssp CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3467889999996 69999999999999999999886 357999999999999999999999999999999999
Q ss_pred eecCC
Q psy1078 109 HVNDY 113 (199)
Q Consensus 109 ~a~~~ 113 (199)
|+.+.
T Consensus 107 ~a~~~ 111 (121)
T 2bz2_A 107 IARKQ 111 (121)
T ss_dssp ECCSS
T ss_pred EeCCC
Confidence 99764
No 191
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.73 E-value=2.5e-17 Score=132.04 Aligned_cols=108 Identities=19% Similarity=0.246 Sum_probs=93.3
Q ss_pred CchhhhHHHHhhchhcccC-CCCCccccCCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEE
Q psy1078 2 NPLTNVKNIKKLSEQELSS-GSKTSWHDQYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFI 80 (199)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV 80 (199)
++..|..|+..+|+..+.. .....|. .++.+|||+|||+.+++++|+.+|..||.|..|.|+.+ .+|.++|||||
T Consensus 67 ~~~~A~~A~~~l~g~~i~g~~l~v~~a---~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV 142 (261)
T 3sde_A 67 SRTLAEIAKAELDGTILKSRPLRIRFA---THGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFV 142 (261)
T ss_dssp SHHHHHHHHHHHTTCEETTEECEEEEC---CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEE
T ss_pred CHHHHHHHHHHcCCcEECCceeEeeec---ccCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEE
Confidence 5788999999999988654 3344433 45789999999999999999999999999999999999 48999999999
Q ss_pred EecCHHHHHHHHHhh-CCCEeC---CeeEEEEeecCC
Q psy1078 81 CYEDQRSTVLSVDNL-NGVKVL---SRTIRVDHVNDY 113 (199)
Q Consensus 81 ~f~~~~~a~~Ai~~l-ng~~i~---g~~l~v~~a~~~ 113 (199)
+|.+.++|.+|+..| +|..+. |++|.|.++.+.
T Consensus 143 ~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~~ 179 (261)
T 3sde_A 143 EFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQF 179 (261)
T ss_dssp EESSHHHHHHHHHHHHHSCEESSSSCCBCEEEECCCE
T ss_pred EeCCHHHHHHHHHHhcCCeEEecCCCceEEEeecccc
Confidence 999999999999999 555555 999999998763
No 192
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.73 E-value=1.2e-17 Score=129.62 Aligned_cols=77 Identities=10% Similarity=0.185 Sum_probs=69.1
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCe--EEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCe----eE
Q psy1078 32 DSAWIFVGGLPYDLSEGDVICIFSQYGEI--VNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSR----TI 105 (199)
Q Consensus 32 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i--~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~----~l 105 (199)
++.+|||+|||+.+++++|+.+|++||.| ..+.++.+. |..+|||||+|.+.++|..||..|||..|.|. ++
T Consensus 122 p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~ 199 (205)
T 3tyt_A 122 PSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPY 199 (205)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCE
T ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcce
Confidence 45689999999999999999999999999 899888764 66679999999999999999999999999987 57
Q ss_pred EEEee
Q psy1078 106 RVDHV 110 (199)
Q Consensus 106 ~v~~a 110 (199)
.|.||
T Consensus 200 ~vk~~ 204 (205)
T 3tyt_A 200 TLKLC 204 (205)
T ss_dssp ECEEE
T ss_pred EEEec
Confidence 77765
No 193
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.73 E-value=6.3e-18 Score=129.66 Aligned_cols=77 Identities=19% Similarity=0.393 Sum_probs=72.2
Q ss_pred CCcEEEEeCCCC-CCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEEee
Q psy1078 32 DSAWIFVGGLPY-DLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHV 110 (199)
Q Consensus 32 ~~~~l~V~nLp~-~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~a 110 (199)
++++|||+|||+ .+++++|+.+|+.||.|..|.++.++ +|||||+|.+.++|..|+..|||..|.|+.|.|.|+
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 76 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 76 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEEC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEe
Confidence 468999999999 99999999999999999999998775 789999999999999999999999999999999998
Q ss_pred cCC
Q psy1078 111 NDY 113 (199)
Q Consensus 111 ~~~ 113 (199)
...
T Consensus 77 ~~~ 79 (198)
T 1qm9_A 77 KHQ 79 (198)
T ss_dssp CCC
T ss_pred cCC
Confidence 754
No 194
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.72 E-value=3e-17 Score=129.10 Aligned_cols=76 Identities=18% Similarity=0.323 Sum_probs=70.6
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCC-CeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeC-CeeEEEEe
Q psy1078 32 DSAWIFVGGLPYDLSEGDVICIFSQYG-EIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVL-SRTIRVDH 109 (199)
Q Consensus 32 ~~~~l~V~nLp~~~te~~L~~~F~~~G-~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~-g~~l~v~~ 109 (199)
.+++|||+|||+.+++++|+.+|..|| .|..|.++.. .+|||||+|.+.++|.+|+..|||..|+ |+.|.|.|
T Consensus 150 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~ 224 (229)
T 2adc_A 150 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSF 224 (229)
T ss_dssp SCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEE
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEE
Confidence 468999999999999999999999999 9999999643 2799999999999999999999999999 99999999
Q ss_pred ecC
Q psy1078 110 VND 112 (199)
Q Consensus 110 a~~ 112 (199)
+.+
T Consensus 225 a~~ 227 (229)
T 2adc_A 225 SKS 227 (229)
T ss_dssp CSS
T ss_pred ecC
Confidence 875
No 195
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1e-17 Score=112.60 Aligned_cols=77 Identities=18% Similarity=0.412 Sum_probs=66.1
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEEee
Q psy1078 31 KDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHV 110 (199)
Q Consensus 31 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~a 110 (199)
..+++|||+|||+.+++++|+.+|.+||.|..|.|+.+ ++|||||+|.+.++|++|+.. ...+.|+.|.|.++
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a 75 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNA 75 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEec
Confidence 45789999999999999999999999999999999865 589999999999999865322 35568999999998
Q ss_pred cCCC
Q psy1078 111 NDYK 114 (199)
Q Consensus 111 ~~~~ 114 (199)
.+..
T Consensus 76 ~~~~ 79 (88)
T 1wf0_A 76 EPKH 79 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7643
No 196
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.71 E-value=3.1e-17 Score=125.40 Aligned_cols=105 Identities=16% Similarity=0.406 Sum_probs=83.9
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccC----C-------CeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEe
Q psy1078 32 DSAWIFVGGLPYDLSEGDVICIFSQY----G-------EIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKV 100 (199)
Q Consensus 32 ~~~~l~V~nLp~~~te~~L~~~F~~~----G-------~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i 100 (199)
.+++|||+|||+.+++++|+.+|..| | .|..+.+ +.++|||||+|.+.++|.+|| .|||..|
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~~ 75 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 46899999999999999999999999 5 5666655 445899999999999999999 9999999
Q ss_pred CCeeEEEEeecCCCCCCCC-------------CCChhhccceeeccCCCCCCCCCC
Q psy1078 101 LSRTIRVDHVNDYKPPKDN-------------KYTDEETKKLRTIGCAPGTEFGSI 143 (199)
Q Consensus 101 ~g~~l~v~~a~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~ 143 (199)
.|+.|.|.++......... .........+++++++..+++..+
T Consensus 76 ~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l 131 (198)
T 2yh0_A 76 QGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQV 131 (198)
T ss_dssp TTEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHH
T ss_pred cCceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHH
Confidence 9999999998765432211 111234578999999888776554
No 197
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.71 E-value=1.7e-17 Score=131.17 Aligned_cols=79 Identities=20% Similarity=0.355 Sum_probs=71.3
Q ss_pred CCCCcEEEEeCCCCCC---------CHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEe
Q psy1078 30 YKDSAWIFVGGLPYDL---------SEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKV 100 (199)
Q Consensus 30 ~~~~~~l~V~nLp~~~---------te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i 100 (199)
....++|||||||..+ ++++|+.+|++||.|..|.|+.. +|||||+|.+.++|+.|+..|+|..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 3567899999999998 79999999999999999999854 79999999999999999999999999
Q ss_pred ------------CCeeEEEEeecCCC
Q psy1078 101 ------------LSRTIRVDHVNDYK 114 (199)
Q Consensus 101 ------------~g~~l~v~~a~~~~ 114 (199)
.|+.|.|.||....
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC---
T ss_pred eccccccccccCCCCEEEEEEccCCC
Confidence 89999999997643
No 198
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=6e-16 Score=108.75 Aligned_cols=83 Identities=16% Similarity=0.274 Sum_probs=71.3
Q ss_pred ccCCCCCcEEEEeCCCCCCC-----------HHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhh
Q psy1078 27 HDQYKDSAWIFVGGLPYDLS-----------EGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95 (199)
Q Consensus 27 ~~~~~~~~~l~V~nLp~~~t-----------e~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l 95 (199)
+.....+++|+|.||..... +++|+.+|.+||.|..|.| .++ .++|||||+|.+.++|.+|+..|
T Consensus 9 ~~~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~l 84 (112)
T 2dit_A 9 PSRMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTL 84 (112)
T ss_dssp CCCCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHS
T ss_pred CCCCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHc
Confidence 34557789999999954432 5899999999999999966 443 37999999999999999999999
Q ss_pred CCCEeCCeeEEEEeecCC
Q psy1078 96 NGVKVLSRTIRVDHVNDY 113 (199)
Q Consensus 96 ng~~i~g~~l~v~~a~~~ 113 (199)
||..|+|+.|.|.|+.+.
T Consensus 85 ng~~~~gr~l~v~~a~~~ 102 (112)
T 2dit_A 85 DGRWFGGRQITAQAWDGT 102 (112)
T ss_dssp TTCEETTEECEEEECCSC
T ss_pred CCCEECCcEEEEEEeCCC
Confidence 999999999999998763
No 199
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.63 E-value=1.6e-16 Score=110.47 Aligned_cols=73 Identities=16% Similarity=0.271 Sum_probs=65.2
Q ss_pred EEeCCCCCCCHHHHHHHh------------ccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCee
Q psy1078 37 FVGGLPYDLSEGDVICIF------------SQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRT 104 (199)
Q Consensus 37 ~V~nLp~~~te~~L~~~F------------~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~ 104 (199)
++.|||+.+++++|+.+| ++||.|..|.|+++. +|.++|||||+|.+.++|.+|+..|||..++|+.
T Consensus 19 ~~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~ 97 (104)
T 1jmt_A 19 SADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQP 97 (104)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred ccCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEE
Confidence 367788888888877766 999999999999886 5889999999999999999999999999999999
Q ss_pred EEEEee
Q psy1078 105 IRVDHV 110 (199)
Q Consensus 105 l~v~~a 110 (199)
|.|.|+
T Consensus 98 i~v~~s 103 (104)
T 1jmt_A 98 IHAELS 103 (104)
T ss_dssp CCEEEC
T ss_pred EEEEEc
Confidence 999986
No 200
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.63 E-value=1.3e-15 Score=106.01 Aligned_cols=82 Identities=17% Similarity=0.204 Sum_probs=71.1
Q ss_pred CCCcEEEEeCC--CCCCC--------HHHHHHHhccCCCeEEEEEeecCCC--CCcceEEEEEecCHHHHHHHHHhhCCC
Q psy1078 31 KDSAWIFVGGL--PYDLS--------EGDVICIFSQYGEIVNLNLVRDKIT--GKSKGFCFICYEDQRSTVLSVDNLNGV 98 (199)
Q Consensus 31 ~~~~~l~V~nL--p~~~t--------e~~L~~~F~~~G~i~~~~~~~~~~~--g~~~g~afV~f~~~~~a~~Ai~~lng~ 98 (199)
.+++.|.|.|+ |.... .++|+..|++||.|..|.|++++.+ +.++|||||+|.+.++|.+|+..|||.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 46788999998 43443 3689999999999999999988644 368999999999999999999999999
Q ss_pred EeCCeeEEEEeecC
Q psy1078 99 KVLSRTIRVDHVND 112 (199)
Q Consensus 99 ~i~g~~l~v~~a~~ 112 (199)
.++||.|.|.++..
T Consensus 83 ~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 83 KFANRVVVTKYCDP 96 (105)
T ss_dssp EETTEECEEEEECH
T ss_pred EeCCCEEEEEEeCH
Confidence 99999999999753
No 201
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.61 E-value=3.8e-15 Score=105.72 Aligned_cols=80 Identities=16% Similarity=0.244 Sum_probs=70.7
Q ss_pred CCcEEEEeCCCC--CC---CHHHHHHHhccCCCeEEEEEeecCC----CCCcceEEEEEecCHHHHHHHHHhhCCCEeCC
Q psy1078 32 DSAWIFVGGLPY--DL---SEGDVICIFSQYGEIVNLNLVRDKI----TGKSKGFCFICYEDQRSTVLSVDNLNGVKVLS 102 (199)
Q Consensus 32 ~~~~l~V~nLp~--~~---te~~L~~~F~~~G~i~~~~~~~~~~----~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g 102 (199)
++++|+|.|+-. .+ -+++|+..|++||.|..|.|++++. ++.++||+||+|.+.++|.+|+..|||..++|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 678899999832 22 3589999999999999999998864 45788999999999999999999999999999
Q ss_pred eeEEEEeec
Q psy1078 103 RTIRVDHVN 111 (199)
Q Consensus 103 ~~l~v~~a~ 111 (199)
|.|.|.|+.
T Consensus 99 R~i~v~~~~ 107 (118)
T 3ue2_A 99 RKVVAEVYD 107 (118)
T ss_dssp EECEEEEEC
T ss_pred cEEEEEEcC
Confidence 999999975
No 202
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=1.1e-13 Score=95.32 Aligned_cols=64 Identities=20% Similarity=0.418 Sum_probs=57.3
Q ss_pred CCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEEeecCC
Q psy1078 43 YDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHVNDY 113 (199)
Q Consensus 43 ~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~a~~~ 113 (199)
..+++++|+.+|.+||.|..|.|+ +.++|||||+|.+.++|+.||..+++ +.|+.|+|.|+.+.
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~ 90 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQ 90 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCC
Confidence 468999999999999999999997 46799999999999999999988655 68999999998764
No 203
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.52 E-value=3.2e-14 Score=118.00 Aligned_cols=76 Identities=18% Similarity=0.303 Sum_probs=66.5
Q ss_pred CCCCcEEEEeC--CCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeC---Ce-
Q psy1078 30 YKDSAWIFVGG--LPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVL---SR- 103 (199)
Q Consensus 30 ~~~~~~l~V~n--Lp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~---g~- 103 (199)
..++.+||||| |++.+|+++|+.+|++||.|..|.++. ++|||||+|.+.++|++||..|||..+. |+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~ 88 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 88 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCCc
Confidence 46778999999 588999999999999999999987753 3799999999999999999999999883 45
Q ss_pred -eEEEEeec
Q psy1078 104 -TIRVDHVN 111 (199)
Q Consensus 104 -~l~v~~a~ 111 (199)
.|+|.|+.
T Consensus 89 ~~ly~~~~~ 97 (345)
T 3tht_A 89 ITLYLNFVE 97 (345)
T ss_dssp EECEEEECS
T ss_pred eEEEEEEee
Confidence 68888874
No 204
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.48 E-value=2.7e-13 Score=95.50 Aligned_cols=78 Identities=13% Similarity=0.194 Sum_probs=66.3
Q ss_pred CCCCcEEEEeCCCCCC----------CHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCE
Q psy1078 30 YKDSAWIFVGGLPYDL----------SEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVK 99 (199)
Q Consensus 30 ~~~~~~l~V~nLp~~~----------te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~ 99 (199)
..+++.|.+.|+=.-- .+++|+..|++||.|..|.|+++. .+|||||+|.+.++|.+|+..|||..
T Consensus 4 p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~ 79 (114)
T 3s6e_A 4 PLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRW 79 (114)
T ss_dssp CCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCE
T ss_pred CCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 3467789999873322 235889999999999999987653 48999999999999999999999999
Q ss_pred eCCeeEEEEeec
Q psy1078 100 VLSRTIRVDHVN 111 (199)
Q Consensus 100 i~g~~l~v~~a~ 111 (199)
++||.|.|.|+.
T Consensus 80 f~GR~i~v~~~~ 91 (114)
T 3s6e_A 80 FAGKMITAAYVP 91 (114)
T ss_dssp ETTEECEEEEEC
T ss_pred ECCEEEEEEEEc
Confidence 999999999985
No 205
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.35 E-value=4.3e-12 Score=84.83 Aligned_cols=76 Identities=20% Similarity=0.379 Sum_probs=64.5
Q ss_pred CCCCcEEEEeCCC----CCCCH----HHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeC
Q psy1078 30 YKDSAWIFVGGLP----YDLSE----GDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVL 101 (199)
Q Consensus 30 ~~~~~~l~V~nLp----~~~te----~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~ 101 (199)
-|+..||+|.-+| ..+.. .+|...|.+||.|..++++.+. +||+|.+.++|.+||. |||..++
T Consensus 4 GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~ 74 (91)
T 2dnr_A 4 GSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELL 74 (91)
T ss_dssp CCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEET
T ss_pred CCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeC
Confidence 3667788888776 23444 6788999999999999998653 8999999999999996 9999999
Q ss_pred CeeEEEEeecCCC
Q psy1078 102 SRTIRVDHVNDYK 114 (199)
Q Consensus 102 g~~l~v~~a~~~~ 114 (199)
|+.|+|.++.+..
T Consensus 75 Gr~LkV~lkt~dW 87 (91)
T 2dnr_A 75 NRTITIALKSPSG 87 (91)
T ss_dssp TEEEEEEECCCSS
T ss_pred CeEEEEEeCCCCc
Confidence 9999999987644
No 206
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.35 E-value=3.3e-12 Score=90.47 Aligned_cols=76 Identities=17% Similarity=0.256 Sum_probs=68.0
Q ss_pred CCCCCcEEEEeCCCCC-CCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecC-HHHHHHHHHhhC--CCEeCCee
Q psy1078 29 QYKDSAWIFVGGLPYD-LSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYED-QRSTVLSVDNLN--GVKVLSRT 104 (199)
Q Consensus 29 ~~~~~~~l~V~nLp~~-~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~-~~~a~~Ai~~ln--g~~i~g~~ 104 (199)
..+.++.|||+||++. ++.++|+.+|+.||+|..|.++.+. ..|||.|.+ ..+|..|+..|| +..|.|..
T Consensus 14 ~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~------~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~ 87 (121)
T 1owx_A 14 EEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGA------KEGIILFKEKAKEALGKAKDANNGNLQLRNKE 87 (121)
T ss_dssp SCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTC------SEEEEEESSCHHHHHHHHHHTTTSCBCTTSSS
T ss_pred cccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCC------CEEEEEECCChHHHHHHHHHhhcCCcEEeCcE
Confidence 3578999999999999 9999999999999999999998775 359999999 899999999995 68899988
Q ss_pred EEEEee
Q psy1078 105 IRVDHV 110 (199)
Q Consensus 105 l~v~~a 110 (199)
+.+...
T Consensus 88 ~~~evL 93 (121)
T 1owx_A 88 VTWEVL 93 (121)
T ss_dssp EEEEEC
T ss_pred EEEEEC
Confidence 888764
No 207
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.18 E-value=4.9e-11 Score=80.09 Aligned_cols=74 Identities=19% Similarity=0.306 Sum_probs=63.1
Q ss_pred CCCCCcEEEEeCCCCC-----CCH----HHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCE
Q psy1078 29 QYKDSAWIFVGGLPYD-----LSE----GDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVK 99 (199)
Q Consensus 29 ~~~~~~~l~V~nLp~~-----~te----~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~ 99 (199)
.-|+..||+|.-++.. +.. .+|...|..||.|..++++.+. +||+|.+.+.|.+||. |||..
T Consensus 11 ~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~ 81 (95)
T 1ufw_A 11 QGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMK 81 (95)
T ss_dssp CCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSE
T ss_pred cCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCee
Confidence 3477789999988743 333 5688999999999999998763 9999999999999997 99999
Q ss_pred eCCeeEEEEeec
Q psy1078 100 VLSRTIRVDHVN 111 (199)
Q Consensus 100 i~g~~l~v~~a~ 111 (199)
|+|+.|+|.+-.
T Consensus 82 v~Gr~L~V~~k~ 93 (95)
T 1ufw_A 82 VKGRAVKISGPS 93 (95)
T ss_dssp ETTEEEEEECCC
T ss_pred eCCeEEEEeccC
Confidence 999999999843
No 208
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.12 E-value=1.5e-10 Score=90.17 Aligned_cols=67 Identities=16% Similarity=0.210 Sum_probs=60.3
Q ss_pred CCHHHHHHHhccCCCeEEEEEeecCC----CCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEEeec
Q psy1078 45 LSEGDVICIFSQYGEIVNLNLVRDKI----TGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHVN 111 (199)
Q Consensus 45 ~te~~L~~~F~~~G~i~~~~~~~~~~----~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~a~ 111 (199)
-.+++|...|++||.|..+.|+++.. ++.++||+||+|.+.++|.+|+..|||..++||.|.|.++.
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 35689999999999999999986643 45899999999999999999999999999999999999974
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.76 E-value=5.7e-08 Score=66.60 Aligned_cols=74 Identities=19% Similarity=0.192 Sum_probs=67.4
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccC-----CCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeE
Q psy1078 31 KDSAWIFVGGLPYDLSEGDVICIFSQY-----GEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTI 105 (199)
Q Consensus 31 ~~~~~l~V~nLp~~~te~~L~~~F~~~-----G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l 105 (199)
...++|-+-|||..+++..|+.++..| |.|..+.+..+. +-|+|+|.+...|-+|.-.|+|..|.|++|
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~L 92 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKVI 92 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEEE
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeEE
Confidence 346778888999999999999999999 999999998774 779999999999999999999999999999
Q ss_pred EEEee
Q psy1078 106 RVDHV 110 (199)
Q Consensus 106 ~v~~a 110 (199)
+|.-.
T Consensus 93 r~gTv 97 (117)
T 2l9w_A 93 RSGTI 97 (117)
T ss_dssp EEECH
T ss_pred EecCH
Confidence 99864
No 210
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.24 E-value=5.9e-06 Score=56.25 Aligned_cols=74 Identities=14% Similarity=0.152 Sum_probs=63.1
Q ss_pred CcEEEEeCCCCCC-CH----HHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEE
Q psy1078 33 SAWIFVGGLPYDL-SE----GDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRV 107 (199)
Q Consensus 33 ~~~l~V~nLp~~~-te----~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v 107 (199)
..+|+|+||+..+ .. ..++.+|..|+++....+...- .-..|.|.+.++|.+|-..|++..+.|..|+|
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF------RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------KRVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT------TEEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc------eEEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 4679999998876 22 5779999999999888777542 34689999999999999999999999999999
Q ss_pred EeecC
Q psy1078 108 DHVND 112 (199)
Q Consensus 108 ~~a~~ 112 (199)
-++.+
T Consensus 79 YFgq~ 83 (104)
T 1wey_A 79 YFAQT 83 (104)
T ss_dssp ECCCC
T ss_pred EecCC
Confidence 99874
No 211
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.05 E-value=7.7e-05 Score=50.56 Aligned_cols=92 Identities=13% Similarity=0.165 Sum_probs=71.1
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhcc-----CCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeE
Q psy1078 31 KDSAWIFVGGLPYDLSEGDVICIFSQ-----YGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTI 105 (199)
Q Consensus 31 ~~~~~l~V~nLp~~~te~~L~~~F~~-----~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l 105 (199)
.-..+|.|.|||+.+.++.|.-+|.. -|+|..+.... +-|+|+|.+...|++.|.. ..+.|.|..|
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k-~~H~L~~~~L 76 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQ-ADHELHGAQL 76 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTC-SCCBSSSSBC
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcC-CcceecCeEE
Confidence 34578999999999999999999976 26788876642 5689999999999999843 4688999999
Q ss_pred EEEeecCCCCCCCCCCChhhccceeeccCCCCCCCCC
Q psy1078 106 RVDHVNDYKPPKDNKYTDEETKKLRTIGCAPGTEFGS 142 (199)
Q Consensus 106 ~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (199)
.|....+ .....+...++.+.+....
T Consensus 77 sV~P~~~-----------~~~~r~ll~gl~~~t~~~~ 102 (104)
T 2dhx_A 77 SLRPAPP-----------RAPARLLLQGLPPGTSGPS 102 (104)
T ss_dssp EEEECCC-----------CCCCCCCCCSCCCCCCCCC
T ss_pred EEEcCCC-----------CCcceEeeecCCCCCCCCC
Confidence 9976432 1235677788888776543
No 212
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.86 E-value=6e-05 Score=50.54 Aligned_cols=57 Identities=18% Similarity=0.402 Sum_probs=48.3
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhh
Q psy1078 30 YKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95 (199)
Q Consensus 30 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l 95 (199)
+...+.++| ++|..+...||..+|+.||. ..|.|+-+ .-|||.|.+++.|..|+..+
T Consensus 13 p~r~HVf~l-~FP~ewKt~DI~~lFs~fgg-v~I~WidD-------TsAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 13 PKRDHVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDD-------TSAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CCCCSEEEE-ECCTTCCHHHHHHHHTTTCS-CCCEEEET-------TEEEEECSCHHHHHHHHHHH
T ss_pred CCCCeEEEE-eCChhhhhHHHHHHhhccCC-EEEEEEcC-------CeEEEEecCHHHHHHHHHhc
Confidence 345566777 99999999999999999994 46778776 46999999999999999766
No 213
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=97.78 E-value=2.2e-05 Score=57.31 Aligned_cols=79 Identities=10% Similarity=-0.032 Sum_probs=50.7
Q ss_pred EEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEe-------CCeeEEEEeecCCCCCCCCCCChhhccceeeccC
Q psy1078 62 NLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKV-------LSRTIRVDHVNDYKPPKDNKYTDEETKKLRTIGC 134 (199)
Q Consensus 62 ~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i-------~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~ 134 (199)
.+.|.++. +.++|||||+|.+.+.|++|+..+++... ++.............. ...........||++++
T Consensus 2 ~~kl~ln~--~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~v~nl 78 (158)
T 2kn4_A 2 QYKLILNG--KTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHH-HHHMDVEGMTSLKVDNL 78 (158)
T ss_dssp EEEEEEEC--SSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCS-SCCCCCCBCCEEEEESC
T ss_pred cEEEEecC--ccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCcccccccccccccc-ccccCCCCCCEEEEeCC
Confidence 45666664 46899999999999999999988775322 2222223332221111 11122344678999999
Q ss_pred CCCCCCCCC
Q psy1078 135 APGTEFGSI 143 (199)
Q Consensus 135 ~~~~~~~~~ 143 (199)
++.++++++
T Consensus 79 ~~~~~~~~l 87 (158)
T 2kn4_A 79 TYRTSPDTL 87 (158)
T ss_dssp CTTCCHHHH
T ss_pred CCCCCHHHH
Confidence 999887666
No 214
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=97.76 E-value=2.2e-05 Score=56.97 Aligned_cols=71 Identities=10% Similarity=-0.102 Sum_probs=55.9
Q ss_pred CCcceEEEEEecCHHHHHHHHHhh-CCCEeCCeeEEEEeecCCC---------CCCCCCCChhhccceeeccCCCCCCCC
Q psy1078 72 GKSKGFCFICYEDQRSTVLSVDNL-NGVKVLSRTIRVDHVNDYK---------PPKDNKYTDEETKKLRTIGCAPGTEFG 141 (199)
Q Consensus 72 g~~~g~afV~f~~~~~a~~Ai~~l-ng~~i~g~~l~v~~a~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (199)
...+|+++|+|.+.+.|++|+..| ||..|+| .|.++++.... ..............||++++++.+++.
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~ 88 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNKT 88 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSCH
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHH
Confidence 567899999999999999999999 9999999 99999986421 011122234456889999999998876
Q ss_pred CC
Q psy1078 142 SI 143 (199)
Q Consensus 142 ~~ 143 (199)
.+
T Consensus 89 ~l 90 (150)
T 2i2y_A 89 EL 90 (150)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 215
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.74 E-value=4.5e-05 Score=51.30 Aligned_cols=55 Identities=16% Similarity=0.399 Sum_probs=47.3
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhC
Q psy1078 33 SAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLN 96 (199)
Q Consensus 33 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~ln 96 (199)
.+.++| ++|..+...||..+|+.|| -..|.|+-+ .-|||.|.+++.|..|+..+.
T Consensus 6 ~HV~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidD-------TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 6 DHVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDD-------TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEET-------TEEEEEEEEECHHHHHHHHHT
T ss_pred CeEEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcC-------CeEEEEecCHHHHHHHHHhcc
Confidence 455677 9999999999999999999 557888876 469999999999999998764
No 216
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.73 E-value=0.00025 Score=47.24 Aligned_cols=68 Identities=15% Similarity=0.216 Sum_probs=56.0
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCC--cceEEEEEecCHHHHHHHHHhhCCCEeC
Q psy1078 34 AWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGK--SKGFCFICYEDQRSTVLSVDNLNGVKVL 101 (199)
Q Consensus 34 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~--~~g~afV~f~~~~~a~~Ai~~lng~~i~ 101 (199)
++|.|++||+.+|++++...++.+..+.....+....+.+ .-.-|||.|.+.+++......++|+.+-
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 4689999999999999999999998877766655543322 3466999999999999999999998774
No 217
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.65 E-value=0.00035 Score=48.73 Aligned_cols=73 Identities=21% Similarity=0.339 Sum_probs=58.8
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCC-eeEEEEe
Q psy1078 31 KDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLS-RTIRVDH 109 (199)
Q Consensus 31 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g-~~l~v~~ 109 (199)
.+.+.|.|-++|+.. ...+...|.+||.|...... ....+-+|.|.++.+|++|| ..||..|+| -.|-|.+
T Consensus 22 ~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~------~~~NWihI~Y~s~~~A~rAL-~kNG~ii~g~~mIGV~p 93 (119)
T 1wwh_A 22 LDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS------NTGNWMHIRYQSKLQARKAL-SKDGRIFGESIMIGVKP 93 (119)
T ss_dssp GGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC------SSSSEEEEEESSHHHHHHHH-TTTTCEETTTEECEEEE
T ss_pred CCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC------CCCCeEEEEeCCHHHHHHHH-HhCCeEecCCEEEEEEE
Confidence 456789999999986 46677889999999988762 12578999999999999999 679999985 5566666
Q ss_pred ec
Q psy1078 110 VN 111 (199)
Q Consensus 110 a~ 111 (199)
..
T Consensus 94 ~~ 95 (119)
T 1wwh_A 94 CI 95 (119)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 218
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.80 E-value=0.003 Score=42.36 Aligned_cols=71 Identities=13% Similarity=0.175 Sum_probs=50.8
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCC--cceEEEEEecCHHHHHHHHHhhCCCEeC
Q psy1078 31 KDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGK--SKGFCFICYEDQRSTVLSVDNLNGVKVL 101 (199)
Q Consensus 31 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~--~~g~afV~f~~~~~a~~Ai~~lng~~i~ 101 (199)
..+-+|.|+.||+.+|++++.+.++.+-.+.....+....+.+ .-.-|||.|.+.++.......++|..+-
T Consensus 7 ~~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~ 79 (97)
T 2l08_A 7 HHSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFL 79 (97)
T ss_dssp CCCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEE
T ss_pred ccceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEE
Confidence 4566799999999999999888877664443222221111111 2356899999999999999999997764
No 219
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.72 E-value=0.0024 Score=45.14 Aligned_cols=77 Identities=22% Similarity=0.333 Sum_probs=55.5
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCeEE-EEEeec------------CCCC-CcceEEEEEecCHHHHHHHHHhhCCC
Q psy1078 33 SAWIFVGGLPYDLSEGDVICIFSQYGEIVN-LNLVRD------------KITG-KSKGFCFICYEDQRSTVLSVDNLNGV 98 (199)
Q Consensus 33 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~-~~~~~~------------~~~g-~~~g~afV~f~~~~~a~~Ai~~lng~ 98 (199)
...|.|-++|...+ ..+...|++||.|.. +.+... ...+ ....+..|+|.+..+|.+|| ..||.
T Consensus 7 e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL-~~NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDAL-LENGA 84 (132)
T ss_dssp -CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHH-TTTTC
T ss_pred ceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHH-HhCCe
Confidence 34577889977765 556778999999876 221110 0000 13567799999999999999 77999
Q ss_pred EeCCeeEEEEeec
Q psy1078 99 KVLSRTIRVDHVN 111 (199)
Q Consensus 99 ~i~g~~l~v~~a~ 111 (199)
.|+|.-|-|.+..
T Consensus 85 ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 85 VFNGVLLGVIPYT 97 (132)
T ss_dssp EETTEECEEEECC
T ss_pred EeCcEEEEEEECC
Confidence 9999988888764
No 220
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.30 E-value=0.0024 Score=54.68 Aligned_cols=55 Identities=16% Similarity=0.201 Sum_probs=42.0
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHH
Q psy1078 33 SAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVD 93 (199)
Q Consensus 33 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~ 93 (199)
.+.|||. .|..+++.+|.++|++||+|..+.+-.+. ..|+.|+|.+.+++..++.
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHHS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHh
Confidence 4789997 79999999999999999999999876553 3899999999999987763
No 221
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=95.69 E-value=0.0037 Score=42.96 Aligned_cols=48 Identities=8% Similarity=0.088 Sum_probs=17.3
Q ss_pred CchhhhHHHHhhchhcccC-CCCCcccc-----------CCCCCcEEEEeCCCCCCCHHH
Q psy1078 2 NPLTNVKNIKKLSEQELSS-GSKTSWHD-----------QYKDSAWIFVGGLPYDLSEGD 49 (199)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~-----------~~~~~~~l~V~nLp~~~te~~ 49 (199)
+++.|.+|+..||+..+.. .....|.. ......+|||+|||+.+|++.
T Consensus 54 ~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~~~~~~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 54 TQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp CHHHHHHHHHHHTTCEETTEECEEEESSCCCC----------------------------
T ss_pred CHHHHHHHHHHcCCCEECCEEEEEEECCCccccccccccccCCCCceEeCCCCCCccccc
Confidence 6789999999999987543 11222211 123345799999999999763
No 222
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=93.28 E-value=0.27 Score=42.52 Aligned_cols=57 Identities=16% Similarity=0.383 Sum_probs=46.6
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCC
Q psy1078 32 DSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNG 97 (199)
Q Consensus 32 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng 97 (199)
....++|+ +|..+...+|..+|+.||. ..|.++-+ ..|||.|.+.+.|..++..++.
T Consensus 439 R~~vl~v~-f~~~~~~~~i~~~fs~fg~-v~V~widd-------t~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 439 RDHVLHVT-FPKEWKTSDLYQLFSAFGN-IQISWIDD-------TSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGGEEEEE-CCTTCCHHHHHHHGGGGCC-CEEEECSS-------SEEEEECSCHHHHHHHHHHHTT
T ss_pred cCcEEEEe-CCCCCCHHHHHHHHHhcCC-EEEEEEcC-------CeEEEEECCHHHHHHHHHHHHh
Confidence 34577776 9999999999999999994 46666544 4699999999999999988753
No 223
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=89.42 E-value=0.013 Score=49.94 Aligned_cols=42 Identities=19% Similarity=0.275 Sum_probs=24.0
Q ss_pred HHHHhccCCCeEEEEEe----ecC-CCCCcceEE--EEEecCHHHHHHH
Q psy1078 50 VICIFSQYGEIVNLNLV----RDK-ITGKSKGFC--FICYEDQRSTVLS 91 (199)
Q Consensus 50 L~~~F~~~G~i~~~~~~----~~~-~~g~~~g~a--fV~f~~~~~a~~A 91 (199)
|..+|.++|+|..|..+ ... .+....|++ |+.|.....+..+
T Consensus 9 L~~lF~p~pPl~~~~P~~~~p~~~~~~~~~~gia~~~~~f~~~~~~~~~ 57 (437)
T 3pgw_S 9 LLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRDAPPP 57 (437)
T ss_pred HHHhcCCCCCCcCCCCcccccccccCCCCcccHHHHHHhhcCccccccc
Confidence 67899999999887322 221 122233444 7777665444433
No 224
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=86.74 E-value=0.057 Score=36.57 Aligned_cols=53 Identities=11% Similarity=0.106 Sum_probs=38.1
Q ss_pred CchhhhHHHHhhchhcccC-CCCCccccCCCCCcEEEEeCCCCCCCHHHHHHHhccCCC
Q psy1078 2 NPLTNVKNIKKLSEQELSS-GSKTSWHDQYKDSAWIFVGGLPYDLSEGDVICIFSQYGE 59 (199)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~ 59 (199)
++.+|.+|+..||+..+.. .....|..+.... .+++...++++|..+|.+||.
T Consensus 56 ~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~-----~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 56 DIFDAKNAVDHLSGFNVSNRYLVVLYYNANRAF-----QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp SHHHHHHHHHHHTTCBSSSCBCEEEECCHHHHT-----TTSCHHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHcCCCEECCeEEEEEEecCChhh-----hhhhHhHhHHHHHHHHHHhCC
Confidence 5788999999999988653 3344443322111 577888899999999999984
No 225
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=86.62 E-value=0.22 Score=32.63 Aligned_cols=41 Identities=15% Similarity=0.203 Sum_probs=25.8
Q ss_pred CchhhhHHHHhhchhcccC-CCCCccccC-------------CCCCcEEEEeCCC
Q psy1078 2 NPLTNVKNIKKLSEQELSS-GSKTSWHDQ-------------YKDSAWIFVGGLP 42 (199)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-------------~~~~~~l~V~nLp 42 (199)
+++.|.+|+..||+..+.. .....|... .....+||||||+
T Consensus 46 ~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~~~~~~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 46 DPRDAEDAVRGLDGKVICGSRVRVELSTGMPRRSRFDRPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp SHHHHHHHHHHHHHSCSSSCCCEEEESSSCCCSSCCCSCCCSCCCCSCCCSCCCC
T ss_pred CHHHHHHHHHHHCCCeECCcEEEEEEccCCCCcccCCCCCccccCCCceecCCCC
Confidence 5788999999999887433 112222111 1125689999996
No 226
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=84.68 E-value=0.22 Score=34.93 Aligned_cols=61 Identities=8% Similarity=-0.040 Sum_probs=18.6
Q ss_pred ceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEEeecCCCCCCCCCCChhhccceeeccCCCCCCCCCC
Q psy1078 75 KGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHVNDYKPPKDNKYTDEETKKLRTIGCAPGTEFGSI 143 (199)
Q Consensus 75 ~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (199)
.-|+|++|.+...+..|+..|+|....|+. .+.+..+ .........||+++++..+++..+
T Consensus 4 ~~~~~~~~~~~~~~~~a~~~~~g~~~~g~~-~~~~~~~-------~~~~~~~~~l~V~nLp~~~te~~L 64 (135)
T 2lea_A 4 SHHHHHHSSGLVPRGSHMASMTGGQQMGRG-SMSYGRP-------PPDVEGMTSLKVDNLTYRTSPDTL 64 (135)
T ss_dssp --------------------------------CCSCCS-------CSSGGGCCCEEEECCCSSCHHHHH
T ss_pred cccccccccCCCchhhhhhhccCCCCCCCC-CCCcCCC-------CCCCCCCCEEEEeCCCCCCCHHHH
Confidence 357889999999999999999987776653 1222221 222455678999999998876655
No 227
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=73.31 E-value=9 Score=23.48 Aligned_cols=67 Identities=7% Similarity=0.181 Sum_probs=40.0
Q ss_pred EEEEe-CCCCCCCHHHHHHHhccCCC-----eEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEeCCeeEEEE
Q psy1078 35 WIFVG-GLPYDLSEGDVICIFSQYGE-----IVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVD 108 (199)
Q Consensus 35 ~l~V~-nLp~~~te~~L~~~F~~~G~-----i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i~g~~l~v~ 108 (199)
+|||. +--..+...+|..++..-+. |-.+.+. -.|.||+.... .|..++..|++..+.|+.+.|.
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~--------d~~s~v~v~~~-~~~~~~~~l~~~~i~g~~~~v~ 72 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIM--------DNASYVEILNG-KGPHVLKVMKNTTVKGKQLKVN 72 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEEC--------SSCEEEEECTT-CHHHHHHHHTTCCC---CCCEE
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEe--------CCcEEEEECHH-HHHHHHHHhccccCcCceEEEE
Confidence 45664 22334566677776665443 4455553 35788887654 5677888999999999999888
Q ss_pred ee
Q psy1078 109 HV 110 (199)
Q Consensus 109 ~a 110 (199)
.+
T Consensus 73 ~~ 74 (76)
T 2g0c_A 73 KA 74 (76)
T ss_dssp EC
T ss_pred EC
Confidence 75
No 228
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=65.24 E-value=20 Score=26.23 Aligned_cols=55 Identities=7% Similarity=0.041 Sum_probs=37.0
Q ss_pred EEEEeCCCC-C--------CCHHHHHHHh--ccCCCeEEEEEeecCCCCCcceEEEEEecCH-HHHHHHH
Q psy1078 35 WIFVGGLPY-D--------LSEGDVICIF--SQYGEIVNLNLVRDKITGKSKGFCFICYEDQ-RSTVLSV 92 (199)
Q Consensus 35 ~l~V~nLp~-~--------~te~~L~~~F--~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~-~~a~~Ai 92 (199)
.++|-|+|. . .....|...| ..|.++. |..+..+ ..++|++.|.|..- .....|+
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~--~Gh~g~aIv~F~~dw~Gf~~A~ 80 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNY--LGHSGTAIVEFNKDWNGLHNGL 80 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECS--SBEEEEEEEECCSSHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccC--CCCceeEEEEecCChHHHHHHH
Confidence 466778876 2 3447889977 9999876 4444443 45789999999853 3344444
No 229
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=54.26 E-value=20 Score=27.95 Aligned_cols=33 Identities=21% Similarity=0.445 Sum_probs=26.0
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEe
Q psy1078 33 SAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLV 66 (199)
Q Consensus 33 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~ 66 (199)
...+.|+|||+.++...|..++.. +.+..+.++
T Consensus 110 ~~~~iv~NlPy~iss~il~~ll~~-~~~~~~~lm 142 (271)
T 3fut_A 110 QGSLLVANLPYHIATPLVTRLLKT-GRFARLVFL 142 (271)
T ss_dssp TTEEEEEEECSSCCHHHHHHHHHH-CCEEEEEEE
T ss_pred CccEEEecCcccccHHHHHHHhcC-CCCCEEEEE
Confidence 356889999999999999999977 666555444
No 230
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=47.38 E-value=3.4 Score=29.51 Aligned_cols=64 Identities=11% Similarity=-0.065 Sum_probs=15.6
Q ss_pred EEecCHHHHHHHHHhhCCCEeC--CeeEEEEeecCCCC-------------CCCCCCChhhccceeeccCCCCCCCCCC
Q psy1078 80 ICYEDQRSTVLSVDNLNGVKVL--SRTIRVDHVNDYKP-------------PKDNKYTDEETKKLRTIGCAPGTEFGSI 143 (199)
Q Consensus 80 V~f~~~~~a~~Ai~~lng~~i~--g~~l~v~~a~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (199)
..|.+.++|+.|+..|++.... |+.+.+.++..... .............||++++++.+++..|
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L 89 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEI 89 (165)
T ss_dssp -------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHH
Confidence 6788889999999998886665 66666666422110 0001111233457999999998887665
No 231
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=46.07 E-value=3.2 Score=29.66 Aligned_cols=28 Identities=18% Similarity=0.195 Sum_probs=16.3
Q ss_pred HHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEec
Q psy1078 48 GDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYE 83 (199)
Q Consensus 48 ~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~ 83 (199)
+++..+|...|.|+.+ .. .+|||||...
T Consensus 2 ~~~~~l~~~~G~Vkwf---n~-----~kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWF---NV-----RMGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEE---ET-----TTTEEEEEEE
T ss_pred CcccccccceeEEEEE---EC-----CCCeeEEeeC
Confidence 3455667777766543 22 2799999865
No 232
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=43.14 E-value=66 Score=20.85 Aligned_cols=59 Identities=15% Similarity=0.296 Sum_probs=46.7
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhh
Q psy1078 29 QYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95 (199)
Q Consensus 29 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l 95 (199)
....+|-|-|-|+|..+-..++.-.....|---.|..+ -|.|.|.|.+......|+..|
T Consensus 8 sikqnclikiinipqgtlkaevvlavrhlgyefycdyi--------dgqamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 8 SIKQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI--------DGQAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp --CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC--------SSCEEEEESSHHHHHHHHHHH
T ss_pred hhhhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee--------cCeeEEEecCChHHHHHHHHH
Confidence 34667888899999999888877777777776677654 477999999999999998876
No 233
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=39.07 E-value=14 Score=29.07 Aligned_cols=35 Identities=17% Similarity=0.381 Sum_probs=26.9
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEee
Q psy1078 33 SAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVR 67 (199)
Q Consensus 33 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~ 67 (199)
...+.|+|||+.++...|..++.....+..+.++.
T Consensus 114 ~~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~m~ 148 (279)
T 3uzu_A 114 PSLRIIGNLPYNISSPLLFHLMSFAPVVIDQHFML 148 (279)
T ss_dssp CCEEEEEECCHHHHHHHHHHHGGGGGGEEEEEEEE
T ss_pred CceEEEEccCccccHHHHHHHHhccCCccEEEEEe
Confidence 34678999999999999999997655565555443
No 234
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=34.19 E-value=34 Score=30.28 Aligned_cols=56 Identities=11% Similarity=0.119 Sum_probs=41.1
Q ss_pred eCCCCCCCHHHHHHHhc----cCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhh
Q psy1078 39 GGLPYDLSEGDVICIFS----QYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95 (199)
Q Consensus 39 ~nLp~~~te~~L~~~F~----~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l 95 (199)
+..+.+.+-.+|..+|- .+|-|+.+.|...+ -.....++++.|.+.++|..++..+
T Consensus 349 ~~~~k~~aGyDL~~L~iGSEGTLGIITeatLrL~P-~P~~~~~~~~~f~d~~~a~~av~~i 408 (658)
T 4bby_A 349 CQGPRMSTGPDIHHFIMGSEGTLGVITEATIKIRP-TPEYQKYGSVAFPNFEQGVACLREI 408 (658)
T ss_dssp CCCSSCCSSSCTHHHHTTCTTSSCEEEEEEEECEE-CCSEEEEEEEEESSHHHHHHHHHHH
T ss_pred ccccccCCCcCHHHHhccCCCcCcceeeeeeeecc-CCccccccccccCCchhhhhhHHHH
Confidence 34556666667888873 67889988775544 2455678899999999999888765
No 235
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=32.42 E-value=1.1e+02 Score=20.19 Aligned_cols=48 Identities=21% Similarity=0.257 Sum_probs=26.3
Q ss_pred CCCCHHHHHHHhc-cCC---CeEEEEEeec-CCCCCcceEEEEEecCHHHHHHH
Q psy1078 43 YDLSEGDVICIFS-QYG---EIVNLNLVRD-KITGKSKGFCFICYEDQRSTVLS 91 (199)
Q Consensus 43 ~~~te~~L~~~F~-~~G---~i~~~~~~~~-~~~g~~~g~afV~f~~~~~a~~A 91 (199)
...+..+|+..+. .|+ .+..|.-++. -..|++.|||+| |.+.+.|.+.
T Consensus 28 ~tpsk~eirekLAk~~~~~~~~Vvv~~~~t~fG~gkstG~a~I-Yds~e~akk~ 80 (101)
T 1xn9_A 28 STPSRNDVRNKLAAMLNAPLELLVIQRIKTEYGMQESKGYAKL-YEDADRMKQV 80 (101)
T ss_dssp SCCCHHHHHHHHHHHTTCCTTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 4556677766554 344 3334432332 234567777766 7777666543
No 236
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=32.25 E-value=32 Score=28.06 Aligned_cols=23 Identities=22% Similarity=0.232 Sum_probs=19.4
Q ss_pred cEEEEeCCCCCCCHHHHHHHhcc
Q psy1078 34 AWIFVGGLPYDLSEGDVICIFSQ 56 (199)
Q Consensus 34 ~~l~V~nLp~~~te~~L~~~F~~ 56 (199)
..++|+|||+.++..-|..++..
T Consensus 143 ~~~vvaNLPYnIstpil~~ll~~ 165 (353)
T 1i4w_A 143 KFLTVANVTGEGSEGLIMQWLSC 165 (353)
T ss_dssp EEEEEEECCSTTHHHHHHHHHHH
T ss_pred ceEEEEECCCchHHHHHHHHHHh
Confidence 35789999999999988888764
No 237
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=28.77 E-value=44 Score=25.60 Aligned_cols=31 Identities=26% Similarity=0.489 Sum_probs=23.1
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCCCeEEEE
Q psy1078 34 AWIFVGGLPYDLSEGDVICIFSQYGEIVNLN 64 (199)
Q Consensus 34 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~ 64 (199)
..+.|+|||+.++...|..++.....+..+.
T Consensus 91 ~~~vvsNlPY~i~~~il~~ll~~~~~~~~~~ 121 (252)
T 1qyr_A 91 PLRVFGNLPYNISTPLMFHLFSYTDAIADMH 121 (252)
T ss_dssp CEEEEEECCTTTHHHHHHHHHTTGGGEEEEE
T ss_pred ceEEEECCCCCccHHHHHHHHhcCCCcceEE
Confidence 4688999999999998888887543344433
No 238
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=28.00 E-value=1.3e+02 Score=19.78 Aligned_cols=47 Identities=17% Similarity=0.182 Sum_probs=26.1
Q ss_pred CCCCHHHHHHHhc-cCC---CeEEEE-EeecCCCCCcceEEEEEecCHHHHHH
Q psy1078 43 YDLSEGDVICIFS-QYG---EIVNLN-LVRDKITGKSKGFCFICYEDQRSTVL 90 (199)
Q Consensus 43 ~~~te~~L~~~F~-~~G---~i~~~~-~~~~~~~g~~~g~afV~f~~~~~a~~ 90 (199)
...+..+|+..+. .|+ .+..|. +...-..|++.|||+| |.+.+.|.+
T Consensus 28 ~tpsk~eirekLAk~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 79 (102)
T 1ywx_A 28 ATPSIKDVKMKLVAVLNANKQVLVVDTLDQIFGKLEAEGYAKI-YNDEKAMAT 79 (102)
T ss_dssp CCCCHHHHHHHHHHHHTSCSTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHh
Confidence 4566677776654 333 333333 2233234567788866 777776654
No 239
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=26.96 E-value=19 Score=27.84 Aligned_cols=32 Identities=31% Similarity=0.535 Sum_probs=25.2
Q ss_pred EEEEeCCCCCCCHHHHHHHhccCCCeEEEEEe
Q psy1078 35 WIFVGGLPYDLSEGDVICIFSQYGEIVNLNLV 66 (199)
Q Consensus 35 ~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~ 66 (199)
-..|+|||+.++...|..++...+.+..+.++
T Consensus 98 ~~vv~NlPY~is~~il~~ll~~~~~~~~~~lm 129 (255)
T 3tqs_A 98 LRVVGNLPYNISTPLLFHLFSQIHCIEDMHFM 129 (255)
T ss_dssp EEEEEECCHHHHHHHHHHHHHTGGGEEEEEEE
T ss_pred eEEEecCCcccCHHHHHHHHhCCCChheEEEE
Confidence 45899999999999999999876666555444
No 240
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=26.93 E-value=1.3e+02 Score=19.90 Aligned_cols=47 Identities=21% Similarity=0.164 Sum_probs=26.0
Q ss_pred CCCCHHHHHHHhc-cCCC---eEEEEEeec-CCCCCcceEEEEEecCHHHHHH
Q psy1078 43 YDLSEGDVICIFS-QYGE---IVNLNLVRD-KITGKSKGFCFICYEDQRSTVL 90 (199)
Q Consensus 43 ~~~te~~L~~~F~-~~G~---i~~~~~~~~-~~~g~~~g~afV~f~~~~~a~~ 90 (199)
...+..+|+..+. .|+. +..|.-++. -..|++.|||+| |.+.+.|.+
T Consensus 37 ~tpsk~eirekLA~~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 88 (107)
T 2v94_A 37 PTPSRKDVKGKLVAMLDLNPETTVIQYIRSYFGSYKSKGYAKY-YYDKDRMLY 88 (107)
T ss_dssp CCCCHHHHHHHHHHHHTCCGGGEEEEEEECCTTCSEEEEEEEE-ESSHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHh
Confidence 3456677766554 3443 333322222 234567788866 777777764
No 241
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=26.63 E-value=62 Score=21.45 Aligned_cols=35 Identities=11% Similarity=0.246 Sum_probs=27.1
Q ss_pred CeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCC
Q psy1078 59 EIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGV 98 (199)
Q Consensus 59 ~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~ 98 (199)
.|.++..+ ...+||-||+=....+...|+..+.+.
T Consensus 40 ~I~Si~~~-----~~lkGyIyVEA~~~~~V~~ai~gi~~v 74 (106)
T 3h7h_B 40 QIKSVVAP-----EHVKGYIYVEAYKQTHVKQAIEGVGNL 74 (106)
T ss_dssp CCCEEEEC-----TTCCSEEEEEESSHHHHHHHHTTCGGG
T ss_pred ceEEEEec-----CCCceEEEEEeCCHHHHHHHHhcccce
Confidence 46676664 335899999999999999999776553
No 242
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=25.32 E-value=40 Score=25.70 Aligned_cols=30 Identities=17% Similarity=0.149 Sum_probs=23.1
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCCCeEEE
Q psy1078 34 AWIFVGGLPYDLSEGDVICIFSQYGEIVNL 63 (199)
Q Consensus 34 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~~ 63 (199)
..+.|+|||+.++...|..++.....+..+
T Consensus 96 ~~~vv~NlPy~i~~~il~~ll~~~~~~~~~ 125 (249)
T 3ftd_A 96 ELKVVGNLPYNVASLIIENTVYNKDCVPLA 125 (249)
T ss_dssp SEEEEEECCTTTHHHHHHHHHHTGGGCSEE
T ss_pred CcEEEEECchhccHHHHHHHHhcCCCCceE
Confidence 458899999999999999988755444433
No 243
>3mfb_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.20A {Erwinia carotovora}
Probab=24.94 E-value=1.3e+02 Score=21.51 Aligned_cols=37 Identities=16% Similarity=0.282 Sum_probs=28.7
Q ss_pred CCHHHHHHHhccCCCeE---EEEEeecCCCCCcceEEEEE
Q psy1078 45 LSEGDVICIFSQYGEIV---NLNLVRDKITGKSKGFCFIC 81 (199)
Q Consensus 45 ~te~~L~~~F~~~G~i~---~~~~~~~~~~g~~~g~afV~ 81 (199)
.++++|+++-.+.|.+. ++.|..+..+|....|||-+
T Consensus 3 ~t~~~L~~~A~~~gta~trVR~~~~~de~~G~~~v~gv~T 42 (157)
T 3mfb_A 3 LTPEKLLEAANKQGTVPSRVRYQWMEDEETGRLKAVGYHT 42 (157)
T ss_dssp CCHHHHHHHHHTTCEEEBSEEEEEEECTTTCCEEEEEEEC
T ss_pred cCHHHHHHHHHhCCcccccEEEEEEecCCCCcEEEEEEEC
Confidence 57899999999999874 55666663489999888864
No 244
>2i9x_A Putative septation protein spovg; APC86317.1, staphylococcus epidermidis ATCC 12228, ST genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=22.75 E-value=1.4e+02 Score=19.07 Aligned_cols=46 Identities=13% Similarity=0.226 Sum_probs=29.6
Q ss_pred CeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEe--CCeeEEEEeec
Q psy1078 59 EIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKV--LSRTIRVDHVN 111 (199)
Q Consensus 59 ~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i--~g~~l~v~~a~ 111 (199)
.|..+++..-...|+.++||=|+|.+. ..+++..| +.+-|.|.++.
T Consensus 5 ~iTdVri~~~~~~g~lka~asVt~dd~-------fvI~~ikVieg~~GlFVaMPs 52 (87)
T 2i9x_A 5 KVTDVRLRKIQTDGRMKALVSITLDEA-------FVIHDLRVIEGNSGLFVAMPS 52 (87)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETTT-------EEEEEEEEEEETTEEEEECCE
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECCE-------EEEeeEEEEECCCceEEECCC
Confidence 477777765555689999999999762 13444333 13347777754
No 245
>3ulj_A LIN28B, DNA-binding protein; beta barrel, cold shock domain fold, nucleic acid binding, D binding protein; 1.06A {Silurana} PDB: 4a4i_A
Probab=22.38 E-value=58 Score=20.93 Aligned_cols=8 Identities=50% Similarity=0.878 Sum_probs=6.7
Q ss_pred ceEEEEEe
Q psy1078 75 KGFCFICY 82 (199)
Q Consensus 75 ~g~afV~f 82 (199)
+|||||+-
T Consensus 20 KGfGFI~~ 27 (90)
T 3ulj_A 20 MGFGFISM 27 (90)
T ss_dssp TTEEEEEE
T ss_pred CCeEEeEe
Confidence 89999963
No 246
>2k5n_A Putative cold-shock protein; GFT protein structure, PSI, nesgc, OB fold, cold shock structural genomics; NMR {Pectobacterium atrosepticum}
Probab=22.05 E-value=61 Score=19.89 Aligned_cols=10 Identities=60% Similarity=0.866 Sum_probs=7.5
Q ss_pred ceEEEEEecC
Q psy1078 75 KGFCFICYED 84 (199)
Q Consensus 75 ~g~afV~f~~ 84 (199)
+|||||+-.+
T Consensus 14 KGfGFI~~~d 23 (74)
T 2k5n_A 14 KGFGFIKDEN 23 (74)
T ss_dssp TTEEEEEESS
T ss_pred CCeEEEecCC
Confidence 7899987543
No 247
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris}
Probab=21.74 E-value=1.2e+02 Score=25.53 Aligned_cols=54 Identities=15% Similarity=0.095 Sum_probs=36.3
Q ss_pred CCCCCCHHHHHHHhc----cCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhh
Q psy1078 41 LPYDLSEGDVICIFS----QYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95 (199)
Q Consensus 41 Lp~~~te~~L~~~F~----~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l 95 (199)
++.+.+..+|+.+|. .+|-|..+.+-..+ .......+++.|.+.++|..++..+
T Consensus 194 ~~k~~~g~dl~~l~~Gs~GtlGIIt~~tl~l~p-~p~~~~~~~~~~~~~~~a~~~~~~~ 251 (476)
T 3pm9_A 194 LKKDNTGYDLRDLFIGAEGTLGIITAATLKLFP-KPRAVETAFVGLQSPDDALKLLGIA 251 (476)
T ss_dssp CSCCCSSCCCHHHHTTSTTSSCEEEEEEEECEE-CCSEEEEEEEEESCHHHHHHHHHHH
T ss_pred ccCCCCCcCHHHHhccCCCCcEEEEEEEEEEee-cCceeEEEEEEcCCHHHHHHHHHHH
Confidence 444444456666653 46778888775544 2344667889999999998888765
No 248
>2kcm_A Cold shock domain family protein; nucleic acid binding protein, beta barrel, structural genomi 2, protein structure initiative; NMR {Shewanella oneidensis}
Probab=20.49 E-value=69 Score=19.66 Aligned_cols=10 Identities=40% Similarity=0.574 Sum_probs=8.1
Q ss_pred ceEEEEEecC
Q psy1078 75 KGFCFICYED 84 (199)
Q Consensus 75 ~g~afV~f~~ 84 (199)
+|||||+-.+
T Consensus 12 KGfGFI~~~d 21 (74)
T 2kcm_A 12 KKYGFIQGDD 21 (74)
T ss_dssp TTEEEEEETT
T ss_pred CCEEEEecCC
Confidence 8999998654
No 249
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A*
Probab=20.43 E-value=83 Score=26.79 Aligned_cols=43 Identities=16% Similarity=0.142 Sum_probs=29.1
Q ss_pred HHHHHh--ccCCCeEEEEEeecCCCCCcceEEEEEecCHHHHHHHH
Q psy1078 49 DVICIF--SQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSV 92 (199)
Q Consensus 49 ~L~~~F--~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai 92 (199)
+|..+| +.+|-|..+.+-..+ .......+++.|.+.++|..|+
T Consensus 217 ~l~~l~~g~~lGiVt~~~l~l~p-~p~~~~~~~~~f~~~~~~~~~~ 261 (520)
T 1wvf_A 217 TLDGMFTQANYGICTKMGFWLMP-KPPVFKPFEVIFEDEADIVEIV 261 (520)
T ss_dssp CCHHHHTTSSSCEEEEEEEECEE-CCSEEEEEEEEECCGGGHHHHH
T ss_pred chhhhccCCceEEEEEEEEEEEe-cCCeEEEEEEEeCCHHHHHHHH
Confidence 456666 368999998776554 2344566788999877766544
No 250
>2ia9_A Putative septation protein spovg; APC85465, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2; 3.00A {Bacillus subtilis} SCOP: d.366.1.1
Probab=20.27 E-value=1.6e+02 Score=19.33 Aligned_cols=46 Identities=15% Similarity=0.255 Sum_probs=29.6
Q ss_pred CeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEe--CCeeEEEEeec
Q psy1078 59 EIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKV--LSRTIRVDHVN 111 (199)
Q Consensus 59 ~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i--~g~~l~v~~a~ 111 (199)
.|..|+|..-...|+.++||=|+|.+. ..+++..| +..-|.|.++.
T Consensus 5 ~ITdVri~~i~~~gklkA~aSVt~dd~-------fvI~dIkVieg~~GlFVaMPS 52 (100)
T 2ia9_A 5 EVTDVRLRRVNTDGRMRAIASITLDHE-------FVVHDIRVIDGNNGLFVAMPS 52 (100)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETTT-------EEEEEEEEEEETTEEEEECCE
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECCE-------EEEeeEEEEECCCceEEECCC
Confidence 477787765555689999999999762 13444333 13347777754
No 251
>2i9z_A Putative septation protein spovg; APC86317, staphylococcus epidermidis ATCC 12228, STRU genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=20.27 E-value=1.6e+02 Score=19.50 Aligned_cols=46 Identities=13% Similarity=0.226 Sum_probs=29.9
Q ss_pred CeEEEEEeecCCCCCcceEEEEEecCHHHHHHHHHhhCCCEe--CCeeEEEEeec
Q psy1078 59 EIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKV--LSRTIRVDHVN 111 (199)
Q Consensus 59 ~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~lng~~i--~g~~l~v~~a~ 111 (199)
.|..|+|..-...|+.++||=|+|.+. ..+++..| +..-|.|.++.
T Consensus 5 ~iTdVri~~i~~~gklkA~aSVt~dd~-------FvI~dIKViEg~~GlFVaMPS 52 (105)
T 2i9z_A 5 KVTDVRLRKIQTDGRMKALVSITLDEA-------FVIHDLRVIEGNSGLFVAMPS 52 (105)
T ss_dssp CEEEEEEEECCSCSSEEEEEEEEETTT-------EEEEEEEEEEETTEEEEECCE
T ss_pred EEEEEEEEEeCCCCCEEEEEEEEECCE-------EEEeeEEEEECCCceEEECCC
Confidence 466777765555689999999999762 13444433 23347777754
Done!