BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>psy1078
MNPLTNVKNIKKLSEQELSSGSKTSWHDQYKDSAWIFVGGLPYDLSEGDVICIFSQYGEI
VNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHVNDYKPPKDNK
YTDEETKKLRTIGCAPGTEFGSILPVKTEDIKQEKDSKPTESKDKKRKHKEKKVKKEKKK
KKKRKKSSSSSSSSSSDSD

High Scoring Gene Products

Symbol, full name Information P value
CG10466 protein from Drosophila melanogaster 5.3e-56
RBMX2
RNA-binding motif protein, X-linked 2 		protein from Homo sapiens 4.0e-51
RBMX2
Uncharacterized protein 		protein from Canis lupus familiaris 1.7e-50
LOC100140030
Uncharacterized protein 		protein from Bos taurus 2.8e-50
Rbmx2
RNA binding motif protein, X-linked 2 		gene from Rattus norvegicus 4.6e-50
Rbmx2
RNA binding motif protein, X-linked 2 		protein from Mus musculus 9.5e-50
rbmx2
RNA binding motif protein, X-linked 2 		gene_product from Danio rerio 1.2e-49
LOC534630
Uncharacterized protein 		protein from Bos taurus 2.0e-49
RBMX2
Uncharacterized protein 		protein from Canis lupus familiaris 2.0e-49
RBMX2
Uncharacterized protein 		protein from Sus scrofa 3.2e-49
Rbmx2
RNA-binding motif protein, X-linked 2 		protein from Rattus norvegicus 5.2e-49
RAB33A
Uncharacterized protein 		protein from Gallus gallus 8.5e-49
C30B5.4 gene from Caenorhabditis elegans 1.4e-46
AT3G47120 protein from Arabidopsis thaliana 6.1e-39
DDB_G0294559
RNA-binding region RNP-1 domain-containing protein 		gene from Dictyostelium discoideum 5.8e-34
PFC0865w
RNA-binding protein, putative 		gene from Plasmodium falciparum 9.5e-34
PFC0865w
RNA binding protein, putative 		protein from Plasmodium falciparum 3D7 9.5e-34
MGG_03086
U2 snRNP component IST3 		protein from Magnaporthe oryzae 70-15 9.4e-27
IST3
Component of the U2 snRNP 		gene from Saccharomyces cerevisiae 4.0e-26
orf19.1045 gene_product from Candida albicans 9.0e-22
IST3
Putative uncharacterized protein IST3 		protein from Candida albicans SC5314 9.0e-22
MGG_09885
Cleavage stimulation factor 64-kDa subunit 		protein from Magnaporthe oryzae 70-15 1.1e-13
CSTF2
Uncharacterized protein 		protein from Gallus gallus 2.5e-12
Cstf2
cleavage stimulation factor, 3' pre-RNA subunit 2 		protein from Mus musculus 2.8e-12
E2R1C1
Uncharacterized protein 		protein from Canis lupus familiaris 3.4e-12
CSTF2
Cleavage stimulation factor subunit 2 		protein from Homo sapiens 3.5e-12
cpf-2 gene from Caenorhabditis elegans 3.8e-12
CSTF2
Uncharacterized protein 		protein from Canis lupus familiaris 4.6e-12
LOC100515986
Uncharacterized protein 		protein from Sus scrofa 5.3e-12
LOC100515986
Uncharacterized protein 		protein from Sus scrofa 5.4e-12
J9P8Y3
Uncharacterized protein 		protein from Canis lupus familiaris 5.5e-12
CSTF2
Cleavage stimulation factor subunit 2 		protein from Bos taurus 5.7e-12
LOC100515986
Uncharacterized protein 		protein from Sus scrofa 5.7e-12
CSTF2
Uncharacterized protein 		protein from Canis lupus familiaris 5.8e-12
CSTF2
Cleavage stimulation factor subunit 2 		protein from Homo sapiens 5.8e-12
CSTF2
Cleavage stimulation factor subunit 2 		protein from Pongo abelii 5.8e-12
CSTF2
Cleavage stimulation factor subunit 2 		protein from Bos taurus 6.0e-12
LOC100515986
Uncharacterized protein 		protein from Sus scrofa 6.0e-12
CSTF2
Cleavage stimulation factor subunit 2 		protein from Homo sapiens 6.1e-12
CSTF2
Cleavage stimulation factor subunit 2 		protein from Bos taurus 6.9e-12
cstf2
cleavage stimulation factor, 3' pre-RNA, subunit 2 		gene_product from Danio rerio 9.1e-12
CSTF2T
Uncharacterized protein 		protein from Sus scrofa 1.1e-11
CSTF2T
Cleavage stimulation factor subunit 2 tau variant 		protein from Homo sapiens 1.1e-11
Cstf2t
cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa, tau variant 		gene from Rattus norvegicus 1.1e-11
CSTF2T
Uncharacterized protein 		protein from Bos taurus 1.1e-11
Cstf2t
cleavage stimulation factor, 3' pre-RNA subunit 2, tau 		protein from Mus musculus 1.1e-11
CstF-64
Cleavage stimulation factor 64 kilodalton subunit 		protein from Drosophila melanogaster 1.2e-11
u2af2
U2 snRNP auxiliary factor large subunit 		gene from Dictyostelium discoideum 2.5e-11
CBU_1183
Glycine-rich RNA-binding protein 		protein from Coxiella burnetii RSA 493 3.5e-11
CBU_1183
nucleic acid binding domain protein 		protein from Coxiella burnetii RSA 493 3.5e-11
LOC100515986
Uncharacterized protein 		protein from Sus scrofa 7.4e-11
zgc:112425 gene_product from Danio rerio 9.4e-11
VC_0159
RNA-binding protein 		protein from Vibrio cholerae O1 biovar El Tor str. N16961 2.5e-10
VC_0159
RNA-binding protein 		protein from Vibrio cholerae O1 biovar El Tor 2.5e-10
cirbp
cold inducible RNA binding protein 		gene_product from Danio rerio 2.5e-10
ATU2AF65A
AT4G36690 		protein from Arabidopsis thaliana 3.9e-10
SNP1
Component of U1 snRNP required for mRNA splicing via spliceosome 		gene from Saccharomyces cerevisiae 4.5e-10
elavl1
ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu antigen R) 		gene_product from Danio rerio 5.0e-10
RBM23
Probable RNA-binding protein 23 		protein from Homo sapiens 6.6e-10
RBM23
Probable RNA-binding protein 23 		protein from Homo sapiens 6.6e-10
RNA15
Component of the cleavage and polyadenylation factor I (CF I) 		gene from Saccharomyces cerevisiae 9.4e-10
GR-RBP3
AT5G61030 		protein from Arabidopsis thaliana 1.1e-09
ELAVL2
ELAV-like protein 2 		protein from Homo sapiens 1.1e-09
F11A10.7 gene from Caenorhabditis elegans 1.5e-09
RBM23
RNA binding motif protein 23, isoform CRA_f 		protein from Homo sapiens 1.5e-09
RBP31
AT4G24770 		protein from Arabidopsis thaliana 1.6e-09
HNRPDL
Heterogeneous nuclear ribonucleoprotein D-like 		protein from Gallus gallus 1.7e-09
RBMX
Uncharacterized protein 		protein from Sus scrofa 1.8e-09
cirbp
Cold-inducible RNA-binding protein 		protein from Rana catesbeiana 1.8e-09
rbm34
RNA binding motif protein 34 		gene_product from Danio rerio 2.0e-09
Hnrnpdl1
heterogeneous nuclear ribonucleoprotein D-like 		protein from Mus musculus 2.1e-09
CIRBP
Cold inducible RNA binding protein 		protein from Bos taurus 2.2e-09
CIRBP
Uncharacterized protein 		protein from Canis lupus familiaris 2.2e-09
CIRBP
Uncharacterized protein 		protein from Canis lupus familiaris 2.2e-09
CIRBP
Cold-inducible RNA-binding protein 		protein from Homo sapiens 2.2e-09
CIRBP
Cold-inducible RNA-binding protein 		protein from Homo sapiens 2.2e-09
CIRBP
Cold-inducible RNA-binding protein 		protein from Homo sapiens 2.2e-09
CIRBP
Cold-inducible RNA-binding protein 		protein from Homo sapiens 2.2e-09
CIRBP
Cold-inducible RNA-binding protein 		protein from Homo sapiens 2.2e-09
CIRBP
Cold-inducible RNA-binding protein 		protein from Homo sapiens 2.2e-09
CIRBP
Uncharacterized protein 		protein from Sus scrofa 2.2e-09
CIRBP
Cold-inducible RNA-binding protein 		protein from Pongo abelii 2.2e-09
GR-RBP2
AT4G13850 		protein from Arabidopsis thaliana 2.2e-09
RBP47C'
RNA-binding protein 47C' 		protein from Arabidopsis thaliana 2.2e-09
AT1G60900 protein from Arabidopsis thaliana 2.3e-09
hnrpdl
heterogeneous nuclear ribonucleoprotein D-like 		gene_product from Danio rerio 2.6e-09
ELAVL4
ELAV-like protein 4 		protein from Homo sapiens 2.8e-09
CIRBP
Cold-inducible RNA-binding protein 		protein from Homo sapiens 2.9e-09
ELAVL4
ELAV-like protein 4 		protein from Homo sapiens 2.9e-09
ELAVL4
ELAV-like protein 4 		protein from Homo sapiens 3.0e-09
CP31B
AT5G50250 		protein from Arabidopsis thaliana 3.2e-09
elavl3
ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C) 		gene_product from Danio rerio 3.3e-09

The BLAST search returned 4 gene products which did not match your query constraints. Please see the full BLAST report below for the details.

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  psy1078
        (199 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

FB|FBgn0032822 - symbol:CG10466 species:7227 "Drosophila ...   577  5.3e-56   1
UNIPROTKB|Q9Y388 - symbol:RBMX2 "RNA-binding motif protei...   531  4.0e-51   1
UNIPROTKB|J9P250 - symbol:RBMX2 "Uncharacterized protein"...   525  1.7e-50   1
UNIPROTKB|G5E5I0 - symbol:RBMX2 "Uncharacterized protein"...   523  2.8e-50   1
RGD|1562693 - symbol:Rbmx2 "RNA binding motif protein, X-...   521  4.6e-50   1
MGI|MGI:1919414 - symbol:Rbmx2 "RNA binding motif protein...   518  9.5e-50   1
ZFIN|ZDB-GENE-050626-88 - symbol:rbmx2 "RNA binding motif...   517  1.2e-49   1
UNIPROTKB|G3X6K3 - symbol:LOC534630 "Uncharacterized prot...   515  2.0e-49   1
UNIPROTKB|F1PRG0 - symbol:RBMX2 "Uncharacterized protein"...   515  2.0e-49   1
UNIPROTKB|I3LK87 - symbol:RBMX2 "Uncharacterized protein"...   513  3.2e-49   1
UNIPROTKB|F1LMQ9 - symbol:Rbmx2 "RNA-binding motif protei...   511  5.2e-49   1
UNIPROTKB|F1P133 - symbol:F1P133 "Uncharacterized protein...   509  8.5e-49   1
WB|WBGene00016245 - symbol:C30B5.4 species:6239 "Caenorha...   488  1.4e-46   1
TAIR|locus:2075676 - symbol:AT3G47120 species:3702 "Arabi...   416  6.1e-39   1
POMBASE|SPBC887.05c - symbol:cwf29 "RNA-binding protein C...   375  1.3e-34   1
DICTYBASE|DDB_G0294559 - symbol:DDB_G0294559 "RNA-binding...   369  5.8e-34   1
GENEDB_PFALCIPARUM|PFC0865w - symbol:PFC0865w "RNA-bindin...   367  9.5e-34   1
UNIPROTKB|O97318 - symbol:PFC0865w "RNA binding protein, ...   367  9.5e-34   1
ASPGD|ASPL0000074275 - symbol:AN4665 species:162425 "Emer...   356  1.4e-32   1
UNIPROTKB|G4NKC1 - symbol:MGG_03086 "U2 snRNP component I...   301  9.4e-27   1
SGD|S000001444 - symbol:IST3 "Component of the U2 snRNP" ...   295  4.0e-26   1
CGD|CAL0001156 - symbol:orf19.1045 species:5476 "Candida ...   254  9.0e-22   1
UNIPROTKB|Q59VP9 - symbol:IST3 "Putative uncharacterized ...   254  9.0e-22   1
UNIPROTKB|G4MR34 - symbol:MGG_09885 "Cleavage stimulation...   180  1.1e-13   1
UNIPROTKB|Q5ZLS0 - symbol:CSTF2 "Uncharacterized protein"...   173  2.5e-12   1
MGI|MGI:1343054 - symbol:Cstf2 "cleavage stimulation fact...   174  2.8e-12   1
UNIPROTKB|E2R1C1 - symbol:CSTF2T "Uncharacterized protein...   171  3.4e-12   1
UNIPROTKB|E9PID8 - symbol:CSTF2 "Cleavage stimulation fac...   171  3.5e-12   1
UNIPROTKB|E1BVJ6 - symbol:CSTF2 "Uncharacterized protein"...   173  3.7e-12   1
WB|WBGene00000774 - symbol:cpf-2 species:6239 "Caenorhabd...   168  3.8e-12   1
UNIPROTKB|E1C8T0 - symbol:CSTF2 "Uncharacterized protein"...   173  3.8e-12   1
UNIPROTKB|J9NX69 - symbol:CSTF2 "Uncharacterized protein"...   171  4.6e-12   1
UNIPROTKB|F1S1L9 - symbol:LOC100515986 "Uncharacterized p...   171  5.3e-12   1
UNIPROTKB|K7GQE7 - symbol:LOC100515986 "Uncharacterized p...   171  5.4e-12   1
UNIPROTKB|J9P8Y3 - symbol:CSTF2T "Uncharacterized protein...   171  5.5e-12   1
UNIPROTKB|Q8HXM1 - symbol:CSTF2 "Cleavage stimulation fac...   171  5.7e-12   1
UNIPROTKB|K7GS58 - symbol:LOC100515986 "Uncharacterized p...   171  5.7e-12   1
UNIPROTKB|E2RP40 - symbol:CSTF2 "Uncharacterized protein"...   171  5.8e-12   1
UNIPROTKB|P33240 - symbol:CSTF2 "Cleavage stimulation fac...   171  5.8e-12   1
UNIPROTKB|Q5RDA3 - symbol:CSTF2 "Cleavage stimulation fac...   171  5.8e-12   1
UNIPROTKB|F1MVI1 - symbol:CSTF2 "Cleavage stimulation fac...   171  6.0e-12   1
UNIPROTKB|I3LE23 - symbol:LOC100515986 "Uncharacterized p...   171  6.0e-12   1
UNIPROTKB|E7EWR4 - symbol:CSTF2 "Cleavage stimulation fac...   171  6.1e-12   1
UNIPROTKB|G1K177 - symbol:CSTF2 "Cleavage stimulation fac...   171  6.9e-12   1
ZFIN|ZDB-GENE-031118-2 - symbol:cstf2 "cleavage stimulati...   168  9.1e-12   1
UNIPROTKB|F1SD01 - symbol:CSTF2T "Uncharacterized protein...   169  1.1e-11   1
UNIPROTKB|Q9H0L4 - symbol:CSTF2T "Cleavage stimulation fa...   169  1.1e-11   1
RGD|1310026 - symbol:Cstf2t "cleavage stimulation factor,...   169  1.1e-11   1
UNIPROTKB|G3MZ78 - symbol:CSTF2T "Uncharacterized protein...   169  1.1e-11   1
MGI|MGI:1932622 - symbol:Cstf2t "cleavage stimulation fac...   169  1.1e-11   1
FB|FBgn0027841 - symbol:CstF-64 "Cleavage stimulation fac...   166  1.2e-11   1
DICTYBASE|DDB_G0286395 - symbol:u2af2 "U2 snRNP auxiliary...   166  2.5e-11   1
UNIPROTKB|Q83CD7 - symbol:CBU_1183 "Glycine-rich RNA-bind...   154  3.5e-11   1
TIGR_CMR|CBU_1183 - symbol:CBU_1183 "nucleic acid binding...   154  3.5e-11   1
UNIPROTKB|K7GQZ8 - symbol:LOC100515986 "Uncharacterized p...   151  7.4e-11   1
ZFIN|ZDB-GENE-050417-329 - symbol:zgc:112425 "zgc:112425"...   150  9.4e-11   1
ASPGD|ASPL0000076347 - symbol:AN4505 species:162425 "Emer...   149  1.2e-10   1
UNIPROTKB|Q9KVI6 - symbol:VC_0159 "RNA-binding protein" s...   146  2.5e-10   1
TIGR_CMR|VC_0159 - symbol:VC_0159 "RNA-binding protein" s...   146  2.5e-10   1
ZFIN|ZDB-GENE-030131-5841 - symbol:cirbp "cold inducible ...   146  2.5e-10   1
TAIR|locus:2115280 - symbol:ATU2AF65A species:3702 "Arabi...   154  3.9e-10   1
SGD|S000001323 - symbol:SNP1 "Component of U1 snRNP requi...   148  4.5e-10   1
ZFIN|ZDB-GENE-990415-245 - symbol:elavl1 "ELAV (embryonic...   149  5.0e-10   1
UNIPROTKB|G3V5Z6 - symbol:RBM23 "Probable RNA-binding pro...   142  6.6e-10   1
UNIPROTKB|H0YJJ3 - symbol:RBM23 "Probable RNA-binding pro...   142  6.6e-10   1
SGD|S000003012 - symbol:RNA15 "Component of the cleavage ...   145  9.4e-10   1
POMBASE|SPBC3B9.11c - symbol:ctf1 "mRNA cleavage and poly...   147  9.5e-10   1
TAIR|locus:2159401 - symbol:GR-RBP3 "glycine-rich RNA-bin...   145  1.1e-09   1
UNIPROTKB|B1AM48 - symbol:ELAVL2 "ELAV-like protein 2" sp...   140  1.1e-09   1
WB|WBGene00008688 - symbol:F11A10.7 species:6239 "Caenorh...   146  1.5e-09   1
UNIPROTKB|G3XAP0 - symbol:RBM23 "RNA binding motif protei...   142  1.5e-09   1
TAIR|locus:2122009 - symbol:RBP31 "AT4G24770" species:370...   144  1.6e-09   1
UNIPROTKB|Q5ZI72 - symbol:HNRPDL "Heterogeneous nuclear r...   143  1.7e-09   1
UNIPROTKB|K7GNR2 - symbol:RBMX "Uncharacterized protein" ...   138  1.8e-09   1
UNIPROTKB|Q9PTX2 - symbol:cirbp "Cold-inducible RNA-bindi...   138  1.8e-09   1
ZFIN|ZDB-GENE-040718-77 - symbol:rbm34 "RNA binding motif...   145  2.0e-09   1
MGI|MGI:1355299 - symbol:Hnrpdl "heterogeneous nuclear ri...   142  2.1e-09   1
UNIPROTKB|F1NCV5 - symbol:HNRPDL "Heterogeneous nuclear r...   143  2.2e-09   1
UNIPROTKB|Q3SZN4 - symbol:CIRBP "Uncharacterized protein"...   137  2.2e-09   1
UNIPROTKB|E2R6G2 - symbol:CIRBP "Uncharacterized protein"...   137  2.2e-09   1
UNIPROTKB|F6XHA7 - symbol:CIRBP "Uncharacterized protein"...   137  2.2e-09   1
UNIPROTKB|K7EJV5 - symbol:CIRBP "Cold-inducible RNA-bindi...   137  2.2e-09   1
UNIPROTKB|K7EMY9 - symbol:CIRBP "Cold-inducible RNA-bindi...   137  2.2e-09   1
UNIPROTKB|K7EPM4 - symbol:CIRBP "Cold-inducible RNA-bindi...   137  2.2e-09   1
UNIPROTKB|K7EQR7 - symbol:CIRBP "Cold-inducible RNA-bindi...   137  2.2e-09   1
UNIPROTKB|K7ER40 - symbol:CIRBP "Cold-inducible RNA-bindi...   137  2.2e-09   1
UNIPROTKB|Q14011 - symbol:CIRBP "Cold-inducible RNA-bindi...   137  2.2e-09   1
UNIPROTKB|F1S6R1 - symbol:CIRBP "Uncharacterized protein"...   137  2.2e-09   1
UNIPROTKB|Q5RF83 - symbol:CIRBP "Cold-inducible RNA-bindi...   137  2.2e-09   1
TAIR|locus:2119495 - symbol:GR-RBP2 "AT4G13850" species:3...   137  2.2e-09   1
TAIR|locus:2015398 - symbol:RBP47C' "RNA-binding protein ...   123  2.2e-09   2
TAIR|locus:2206001 - symbol:AT1G60900 species:3702 "Arabi...   147  2.3e-09   1
ZFIN|ZDB-GENE-040426-2717 - symbol:hnrpdl "heterogeneous ...   141  2.6e-09   1
UNIPROTKB|B1APY9 - symbol:ELAVL4 "cDNA FLJ50619, highly s...   143  2.8e-09   1
UNIPROTKB|K7ENX8 - symbol:CIRBP "Cold-inducible RNA-bindi...   136  2.9e-09   1
UNIPROTKB|P26378 - symbol:ELAVL4 "ELAV-like protein 4" sp...   143  2.9e-09   1
UNIPROTKB|B1APY8 - symbol:ELAVL4 "ELAV-like protein 4" sp...   143  3.0e-09   1
UNIPROTKB|D4AAT0 - symbol:Elavl4 "ELAV-like protein 4" sp...   142  3.1e-09   1
TAIR|locus:2157702 - symbol:CP31B "chloroplast RNA-bindin...   140  3.2e-09   1
ZFIN|ZDB-GENE-980526-76 - symbol:elavl3 "ELAV (embryonic ...   142  3.3e-09   1

WARNING:  Descriptions of 881 database sequences were not reported due to the
          limiting value of parameter V = 100.


>FB|FBgn0032822 [details] [associations]
            symbol:CG10466 species:7227 "Drosophila melanogaster"
            [GO:0003729 "mRNA binding" evidence=ISS] [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
            evidence=IC] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
            [GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 EMBL:AE014134 GO:GO:0000166 GO:GO:0003729
            Gene3D:3.30.70.330 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
            eggNOG:COG0724 KO:K13107 GeneTree:ENSGT00600000084414 HSSP:P33240
            RefSeq:NP_610003.1 UniGene:Dm.28254 ProteinModelPortal:Q9VIS0
            SMR:Q9VIS0 IntAct:Q9VIS0 MINT:MINT-903544 STRING:Q9VIS0
            PaxDb:Q9VIS0 PRIDE:Q9VIS0 EnsemblMetazoa:FBtr0081291
            EnsemblMetazoa:FBtr0332178 GeneID:35268 KEGG:dme:Dmel_CG10466
            UCSC:CG10466-RA FlyBase:FBgn0032822 InParanoid:Q9VIS0 OMA:YMEGCAP
            OrthoDB:EOG4ZPCBP PhylomeDB:Q9VIS0 GenomeRNAi:35268 NextBio:792713
            ArrayExpress:Q9VIS0 Bgee:Q9VIS0 Uniprot:Q9VIS0
        Length = 154

 Score = 577 (208.2 bits), Expect = 5.3e-56, P = 5.3e-56
 Identities = 107/158 (67%), Positives = 126/158 (79%)

Query:     1 MNPLTNVKNIKKLSEQELSSGSKTSWHDQYKDSAWIFVGGLPYDLSEGDVICIFSQYGEI 60
             MNPLTN+KN+ KLSE EL  G K SWHD YKDSAWIFV G PY L+EGD++C+FSQYGE+
Sbjct:     1 MNPLTNMKNVLKLSEHELQHGGKKSWHDMYKDSAWIFVAGFPYTLTEGDLVCVFSQYGEV 60

Query:    61 VNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHVNDYKPPKDNK 120
             VN+NL+RD  TGKSKGFCF+CYEDQRSTVL+VDNLNG+K+L RT+RVDHV DYKPPK+N+
Sbjct:    61 VNINLIRDSKTGKSKGFCFLCYEDQRSTVLAVDNLNGIKILDRTLRVDHVADYKPPKENE 120

Query:   121 YTDEETKKLRTIGCAPGTEFGSILPVKTEDIKQEKDSK 158
               DEET +L   GCAP  +   I   KTE    +KDSK
Sbjct:   121 KMDEETLRLYMEGCAPKPQLQHI---KTE----KKDSK 151


>UNIPROTKB|Q9Y388 [details] [associations]
            symbol:RBMX2 "RNA-binding motif protein, X-linked 2"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
            EMBL:CH471107 eggNOG:COG0724 HOGENOM:HOG000174091 KO:K13107
            EMBL:AL035423 EMBL:AF151837 EMBL:AL050405 EMBL:AK292855
            EMBL:BC033750 IPI:IPI00032597 RefSeq:NP_057108.2 UniGene:Hs.740515
            ProteinModelPortal:Q9Y388 SMR:Q9Y388 STRING:Q9Y388
            PhosphoSite:Q9Y388 DMDM:62512110 PRIDE:Q9Y388
            Ensembl:ENST00000305536 GeneID:51634 KEGG:hsa:51634 UCSC:uc004evt.3
            CTD:51634 GeneCards:GC0XP129535 HGNC:HGNC:24282 HPA:HPA026609
            neXtProt:NX_Q9Y388 PharmGKB:PA134872051 HOVERGEN:HBG056427
            InParanoid:Q9Y388 OMA:HRHKRAR OrthoDB:EOG4FJ8B4 GenomeRNAi:51634
            NextBio:55565 ArrayExpress:Q9Y388 Bgee:Q9Y388 CleanEx:HS_RBMX2
            Genevestigator:Q9Y388 GermOnline:ENSG00000134597 Uniprot:Q9Y388
        Length = 322

 Score = 531 (192.0 bits), Expect = 4.0e-51, P = 4.0e-51
 Identities = 99/160 (61%), Positives = 125/160 (78%)

Query:     1 MNPLTNVKNIKKLSEQELSSG--SKTSWHDQYKDSAWIFVGGLPYDLSEGDVICIFSQYG 58
             MNPLT VK I +L+E+E+  G   K SWH +YKDSAWIF+GGLPY+L+EGD+IC+FSQYG
Sbjct:     1 MNPLTKVKLINELNEREVQLGVADKVSWHSEYKDSAWIFLGGLPYELTEGDIICVFSQYG 60

Query:    59 EIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHVNDYKPPKD 118
             EIVN+NLVRDK TGKSKGFCF+CYEDQRST+L+VDN NG+K+  RTIRVDHV++Y+ PKD
Sbjct:    61 EIVNINLVRDKKTGKSKGFCFLCYEDQRSTILAVDNFNGIKIKGRTIRVDHVSNYRAPKD 120

Query:   119 NKYTDEETKKLRTIGCAPGTEFGSILPVKTEDIKQEKDSK 158
             ++  D+ T++L+  GC   T   S L   +ED K  K  K
Sbjct:   121 SEEIDDVTRQLQEKGCGARTPSPS-LSESSEDEKPTKKHK 159


>UNIPROTKB|J9P250 [details] [associations]
            symbol:RBMX2 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00600000084414 OMA:HRHKRAR EMBL:AAEX03026906
            ProteinModelPortal:J9P250 Ensembl:ENSCAFT00000043973 Uniprot:J9P250
        Length = 341

 Score = 525 (189.9 bits), Expect = 1.7e-50, P = 1.7e-50
 Identities = 99/161 (61%), Positives = 126/161 (78%)

Query:     1 MNPLTNVKNIKKLSEQELSSG--SKTSWHDQYKDSAWIFVGGLPYDLSEGDVICIFSQYG 58
             MNPLT VK I +L+E+E+  G   K SWH +YKDSAWIF+GGLPY+L+EGD+IC+FSQYG
Sbjct:     1 MNPLTKVKLINELNEREVQLGVADKVSWHSEYKDSAWIFLGGLPYELTEGDIICVFSQYG 60

Query:    59 EIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHVNDYKPPKD 118
             EIVN+NLVRDK TGKSKGFCF+CYEDQRST+L+VDN NG+K+  RTIRVDHV++Y+ PKD
Sbjct:    61 EIVNINLVRDKKTGKSKGFCFLCYEDQRSTILAVDNFNGIKIKGRTIRVDHVSNYRAPKD 120

Query:   119 NKYTDEETKKLRTIGCAPGTEFGSILPVK-TEDIKQEKDSK 158
             ++  D+ TK+L+  GC  G    S+   + +ED K  K  K
Sbjct:   121 SEEMDDVTKELQEKGC--GAHTPSVSSSEGSEDDKPPKKYK 159


>UNIPROTKB|G5E5I0 [details] [associations]
            symbol:RBMX2 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00600000084414 OMA:HRHKRAR EMBL:DAAA02067479
            Ensembl:ENSBTAT00000019649 Uniprot:G5E5I0
        Length = 338

 Score = 523 (189.2 bits), Expect = 2.8e-50, P = 2.8e-50
 Identities = 99/165 (60%), Positives = 128/165 (77%)

Query:     1 MNPLTNVKNIKKLSEQELSSG--SKTSWHDQYKDSAWIFVGGLPYDLSEGDVICIFSQYG 58
             MNPLT VK I +L+E+E+  G   K SWH++YKDSAWIF+GGLPY+L+EGD+IC+FSQYG
Sbjct:     1 MNPLTKVKLINELNEREVELGVAEKVSWHNEYKDSAWIFLGGLPYELTEGDIICVFSQYG 60

Query:    59 EIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHVNDYKPPKD 118
             EIVN+NLVRDK TGKSKGFCF+CYEDQRSTVL+VDN NG+K+  RTIRVDHV++Y+ P+D
Sbjct:    61 EIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNFNGIKIKGRTIRVDHVSNYRLPED 120

Query:   119 NKYTDEETKKLRTIGCA-----PGTEFGSILPVKTEDIKQEKDSK 158
             ++  DE T++L+  GC      P +  GS     T+  K++K  K
Sbjct:   121 SEEMDEVTRELQERGCGTHTPPPSSSEGSEDDKPTKKHKKDKKEK 165


>RGD|1562693 [details] [associations]
            symbol:Rbmx2 "RNA binding motif protein, X-linked 2"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            RGD:1562693 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
            eggNOG:COG0724 HOGENOM:HOG000174091 KO:K13107 CTD:51634
            HOVERGEN:HBG056427 OrthoDB:EOG4FJ8B4 EMBL:BC158684 IPI:IPI00361641
            RefSeq:NP_001107258.2 UniGene:Rn.67383 ProteinModelPortal:B0BN49
            STRING:B0BN49 GeneID:367930 KEGG:rno:367930 UCSC:RGD:1562693
            NextBio:691882 Genevestigator:B0BN49 Uniprot:B0BN49
        Length = 328

 Score = 521 (188.5 bits), Expect = 4.6e-50, P = 4.6e-50
 Identities = 95/163 (58%), Positives = 127/163 (77%)

Query:     1 MNPLTNVKNIKKLSEQELSSG--SKTSWHDQYKDSAWIFVGGLPYDLSEGDVICIFSQYG 58
             MNPLT VK I +L+E+E+  G   K SWH +YKDSAWIF+GGLPY+L+EGD+IC+FSQYG
Sbjct:     1 MNPLTKVKLINELNEREVQLGVAEKVSWHSEYKDSAWIFLGGLPYELTEGDIICVFSQYG 60

Query:    59 EIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHVNDYKPPKD 118
             EIVN+NLVRDK TGKSKGFCF+CYEDQRSTVL+VDN NG+K+  RTIRVDHV +Y+ P++
Sbjct:    61 EIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNFNGIKIKGRTIRVDHVANYRAPQE 120

Query:   119 NKYTDEETKKLRTIGCAPGTEFGSILPVKTEDIKQEKDSKPTE 161
             ++  D+ T++L+  GC   T      P    ++ +++D+K T+
Sbjct:   121 SEDVDDVTRELQEKGCGAKTP-----PSSPPEVSEDEDAKVTK 158


>MGI|MGI:1919414 [details] [associations]
            symbol:Rbmx2 "RNA binding motif protein, X-linked 2"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003674 "molecular_function" evidence=ND]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0005575 "cellular_component"
            evidence=ND] [GO:0008150 "biological_process" evidence=ND]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 MGI:MGI:1919414 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 eggNOG:COG0724 HOGENOM:HOG000174091 KO:K13107
            EMBL:AL672042 GeneTree:ENSGT00600000084414 CTD:51634
            HOVERGEN:HBG056427 OrthoDB:EOG4FJ8B4 EMBL:AK076115 EMBL:AK168018
            EMBL:BC026976 IPI:IPI00261255 RefSeq:NP_775552.1 UniGene:Mm.32561
            ProteinModelPortal:Q8R0F5 SMR:Q8R0F5 STRING:Q8R0F5
            PhosphoSite:Q8R0F5 PRIDE:Q8R0F5 Ensembl:ENSMUST00000033433
            GeneID:209003 KEGG:mmu:209003 UCSC:uc009tct.1 InParanoid:A2AF74
            NextBio:372506 Bgee:Q8R0F5 CleanEx:MM_RBMX2 Genevestigator:Q8R0F5
            GermOnline:ENSMUSG00000031107 Uniprot:Q8R0F5
        Length = 326

 Score = 518 (187.4 bits), Expect = 9.5e-50, P = 9.5e-50
 Identities = 95/163 (58%), Positives = 127/163 (77%)

Query:     1 MNPLTNVKNIKKLSEQELSSG--SKTSWHDQYKDSAWIFVGGLPYDLSEGDVICIFSQYG 58
             MNPLT VK I +L+E+E+  G   K SWH +YK SAWIFVGGLPY+L+EGD+IC+FSQYG
Sbjct:     1 MNPLTKVKLINELNEREVQLGVAEKVSWHSEYKHSAWIFVGGLPYELTEGDIICVFSQYG 60

Query:    59 EIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHVNDYKPPKD 118
             EIVN+NLVRDK TGKSKGFCF+CYEDQRSTVL+VDN NG+K+  RTIRVDHV++Y+ P++
Sbjct:    61 EIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNFNGIKIKGRTIRVDHVSNYRAPQE 120

Query:   119 NKYTDEETKKLRTIGCAPGTEFGSILPVKTEDIKQEKDSKPTE 161
             ++  D+ T++L+  GC   T      P    ++ +++D+K T+
Sbjct:   121 SEDVDDVTRELQEKGCGVKTP-----PSSPPEVSEDEDAKLTK 158


>ZFIN|ZDB-GENE-050626-88 [details] [associations]
            symbol:rbmx2 "RNA binding motif protein, X-linked 2"
            species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0008150 "biological_process" evidence=ND] [GO:0005575
            "cellular_component" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            ZFIN:ZDB-GENE-050626-88 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 GeneTree:ENSGT00600000084414 EMBL:AL935199
            IPI:IPI00505218 Ensembl:ENSDART00000143373 Bgee:F1RAH8
            Uniprot:F1RAH8
        Length = 450

 Score = 517 (187.1 bits), Expect = 1.2e-49, P = 1.2e-49
 Identities = 102/172 (59%), Positives = 126/172 (73%)

Query:     1 MNPLTNVKNIKKLSEQELSSGSK--TSWHDQYKDSAWIFVGGLPYDLSEGDVICIFSQYG 58
             MNPLT VK I +L+E+E   G K   SWH  YK+SAW+F+GG PY+L+EGD+IC+FSQYG
Sbjct:     1 MNPLTKVKLINELNEREAQLGIKETVSWHSVYKNSAWVFIGGFPYELTEGDIICVFSQYG 60

Query:    59 EIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHVNDYKPPKD 118
             EI N+NLVRDK TGKSKGFCF+CYEDQRST+L+VDN NG+K+  RTIRVDHV +Y+PPKD
Sbjct:    61 EIANINLVRDKKTGKSKGFCFLCYEDQRSTILAVDNFNGIKIKGRTIRVDHVANYRPPKD 120

Query:   119 NKYTDEETKKLRTIGCAP----GTEFGSI----LPVKT-EDIKQEKDSKPTE 161
                 D+ TK+LR  GCAP     +E  S     +PVK  +  K+EK  K  E
Sbjct:   121 TDDIDDITKQLREEGCAPKPVSSSEEESAEEYAVPVKKPKKDKKEKKKKKKE 172


>UNIPROTKB|G3X6K3 [details] [associations]
            symbol:LOC534630 "Uncharacterized protein" species:9913
            "Bos taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13107
            GeneTree:ENSGT00600000084414 OMA:VFSQNRY EMBL:DAAA02072184
            RefSeq:NP_001193477.1 UniGene:Bt.88830 Ensembl:ENSBTAT00000008205
            GeneID:534630 KEGG:bta:534630 NextBio:20876482 Uniprot:G3X6K3
        Length = 330

 Score = 515 (186.3 bits), Expect = 2.0e-49, P = 2.0e-49
 Identities = 98/165 (59%), Positives = 127/165 (76%)

Query:     1 MNPLTNVKNIKKLSEQELSSG--SKTSWHDQYKDSAWIFVGGLPYDLSEGDVICIFSQYG 58
             MNPLT VK I +L+E+E+  G   K SWH++YKDSAWIF+GGLPY+L+EGD+IC+FSQYG
Sbjct:     1 MNPLTKVKLINELNEREVQLGVPEKVSWHNEYKDSAWIFLGGLPYELTEGDIICVFSQYG 60

Query:    59 EIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHVNDYKPPKD 118
             EIVN+NLV DK TGKSKGFCF+CYEDQRSTVL+VDN NG+K+  RTIRVDHV++Y+ P+D
Sbjct:    61 EIVNINLVWDKKTGKSKGFCFLCYEDQRSTVLAVDNFNGIKIKGRTIRVDHVSNYRLPED 120

Query:   119 NKYTDEETKKLRTIGCA-----PGTEFGSILPVKTEDIKQEKDSK 158
             ++  DE T++L+  GC      P +  GS     T+  K++K  K
Sbjct:   121 SEEMDEVTRELQERGCGTHTPPPSSSEGSEDDKPTKKHKKDKKEK 165


>UNIPROTKB|F1PRG0 [details] [associations]
            symbol:RBMX2 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00600000084414 EMBL:AAEX03026906
            Ensembl:ENSCAFT00000029787 Uniprot:F1PRG0
        Length = 326

 Score = 515 (186.3 bits), Expect = 2.0e-49, P = 2.0e-49
 Identities = 97/160 (60%), Positives = 125/160 (78%)

Query:     2 NPLTNVKNIKKLSEQELSSG--SKTSWHDQYKDSAWIFVGGLPYDLSEGDVICIFSQYGE 59
             +PLT VK I +L+E+E+  G   K SWH +YKDSAWIF+GGLPY+L+EGD+IC+FSQYGE
Sbjct:     1 SPLTKVKLINELNEREVQLGVADKVSWHSEYKDSAWIFLGGLPYELTEGDIICVFSQYGE 60

Query:    60 IVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHVNDYKPPKDN 119
             IVN+NLVRDK TGKSKGFCF+CYEDQRST+L+VDN NG+K+  RTIRVDHV++Y+ PKD+
Sbjct:    61 IVNINLVRDKKTGKSKGFCFLCYEDQRSTILAVDNFNGIKIKGRTIRVDHVSNYRAPKDS 120

Query:   120 KYTDEETKKLRTIGCAPGTEFGSILPVK-TEDIKQEKDSK 158
             +  D+ TK+L+  GC  G    S+   + +ED K  K  K
Sbjct:   121 EEMDDVTKELQEKGC--GAHTPSVSSSEGSEDDKPPKKYK 158


>UNIPROTKB|I3LK87 [details] [associations]
            symbol:RBMX2 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00600000084414 OMA:HRHKRAR Ensembl:ENSSSCT00000023251
            Uniprot:I3LK87
        Length = 312

 Score = 513 (185.6 bits), Expect = 3.2e-49, P = 3.2e-49
 Identities = 99/165 (60%), Positives = 127/165 (76%)

Query:     2 NPLTNVKNIKKLSEQELSSG--SKTSWHDQYKDSAWIFVGGLPYDLSEGDVICIFSQ--- 56
             +PLT VK I +L+E+E+  G   K SWH +YKDSAWIF+GGLPY+L+EGD+IC+FSQ   
Sbjct:     2 SPLTKVKLINELNEREVQLGVAEKVSWHSEYKDSAWIFLGGLPYELTEGDIICVFSQINR 61

Query:    57 YGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHVNDYKPP 116
             YGEIVN+NLVRDK TGKSKGFCF+CYEDQRSTVL+VDN NG+K+  RTIRVDHV++Y+ P
Sbjct:    62 YGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNFNGIKIKGRTIRVDHVSNYRAP 121

Query:   117 KDNKYTDEETKKLRTIGCAPGTEFGSILPVKTEDIKQEKDSKPTE 161
             KD++ TD+ TK+L+  GC      G+  P ++     E D KPT+
Sbjct:   122 KDSEETDDVTKELQERGC------GAHTPSQSSSESSE-DDKPTK 159


>UNIPROTKB|F1LMQ9 [details] [associations]
            symbol:Rbmx2 "RNA-binding motif protein, X-linked 2"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 RGD:1562693 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00600000084414
            OMA:HRHKRAR IPI:IPI00361641 Ensembl:ENSRNOT00000048922
            Uniprot:F1LMQ9
        Length = 327

 Score = 511 (184.9 bits), Expect = 5.2e-49, P = 5.2e-49
 Identities = 93/162 (57%), Positives = 126/162 (77%)

Query:     2 NPLTNVKNIKKLSEQELSSG--SKTSWHDQYKDSAWIFVGGLPYDLSEGDVICIFSQYGE 59
             +PLT VK I +L+E+E+  G   K SWH +YKDSAWIF+GGLPY+L+EGD+IC+FSQYGE
Sbjct:     1 SPLTKVKLINELNEREVQLGVAEKVSWHSEYKDSAWIFLGGLPYELTEGDIICVFSQYGE 60

Query:    60 IVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHVNDYKPPKDN 119
             IVN+NLVRDK TGKSKGFCF+CYEDQRSTVL+VDN NG+K+  RTIRVDHV +Y+ P+++
Sbjct:    61 IVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNFNGIKIKGRTIRVDHVANYRAPQES 120

Query:   120 KYTDEETKKLRTIGCAPGTEFGSILPVKTEDIKQEKDSKPTE 161
             +  D+ T++L+  GC   T      P    ++ +++D+K T+
Sbjct:   121 EDVDDVTRELQEKGCGAKTP-----PSSPPEVSEDEDAKVTK 157


>UNIPROTKB|F1P133 [details] [associations]
            symbol:F1P133 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00600000084414 OMA:YMEGCAP EMBL:AADN02013152
            IPI:IPI00575891 ProteinModelPortal:F1P133
            Ensembl:ENSGALT00000006408 Uniprot:F1P133
        Length = 166

 Score = 509 (184.2 bits), Expect = 8.5e-49, P = 8.5e-49
 Identities = 96/164 (58%), Positives = 120/164 (73%)

Query:     1 MNPLTNVKNIKKLS--EQELSSGSKTSWHDQYKDSAWIFVGGLPYDLSEGDVICIFSQYG 58
             ++PLT VK I +L+  E EL      SWH +YKDSAW+F+GGLPY L+EGDVIC+FSQYG
Sbjct:     1 LSPLTKVKLINELNAREAELGVSEAVSWHAEYKDSAWVFIGGLPYQLTEGDVICVFSQYG 60

Query:    59 EIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHVNDYKPPKD 118
             E+VN+NLVRDK TGKSKGFCF+CYEDQRSTVL+VDN NG+K+  RTIRVDHV +Y+PPKD
Sbjct:    61 EVVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNFNGIKIKGRTIRVDHVANYRPPKD 120

Query:   119 NKYTDEETKKLRTIGCA----PGTEFGSILPVKTEDIKQEKDSK 158
             +   D+ TK L   GC     P T   S L      ++++KD +
Sbjct:   121 SDDLDDVTKALHAKGCGVKTPPHTSSDSSLEDDDTPVQKQKDKE 164


>WB|WBGene00016245 [details] [associations]
            symbol:C30B5.4 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
            "embryo development ending in birth or egg hatching" evidence=IMP]
            [GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
            development" evidence=IMP] [GO:0042127 "regulation of cell
            proliferation" evidence=IMP] [GO:0040020 "regulation of meiosis"
            evidence=IMP] [GO:0008406 "gonad development" evidence=IMP]
            [GO:0016477 "cell migration" evidence=IMP] [GO:0007281 "germ cell
            development" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0009792 GO:GO:0040007 GO:GO:0016477
            GO:GO:0008406 GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 GO:GO:0042127 GO:GO:0007281 GO:GO:0040020
            eggNOG:COG0724 HOGENOM:HOG000174091 KO:K13107 EMBL:FO080719
            HSSP:Q14103 GeneTree:ENSGT00600000084414 PIR:T15706
            RefSeq:NP_495237.1 UniGene:Cel.15758 ProteinModelPortal:Q18318
            SMR:Q18318 DIP:DIP-26943N IntAct:Q18318 MINT:MINT-1092197
            STRING:Q18318 PaxDb:Q18318 EnsemblMetazoa:C30B5.4 GeneID:183040
            KEGG:cel:CELE_C30B5.4 UCSC:C30B5.4 CTD:183040 WormBase:C30B5.4
            InParanoid:Q18318 OMA:WKVIRER NextBio:919704 Uniprot:Q18318
        Length = 302

 Score = 488 (176.8 bits), Expect = 1.4e-46, P = 1.4e-46
 Identities = 91/162 (56%), Positives = 120/162 (74%)

Query:     1 MNPLTNVKNIKKLSEQELSSGS----KTSWHDQYKDSAWIFVGGLPYDLSEGDVICIFSQ 56
             MNP+TN+KN  +++E+ELS G     K SWH  YKDSAWI++GGL Y LSEGDVI +FSQ
Sbjct:     1 MNPITNIKNQNRMNERELSLGYAGDLKKSWHQTYKDSAWIYIGGLSYALSEGDVIAVFSQ 60

Query:    57 YGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHVNDYKPP 116
             YGE++N+NL+RDK TGKSKGF F+CY+DQRST+L+VDN NG+ +  R IRVDHV +YK P
Sbjct:    61 YGEVMNINLIRDKDTGKSKGFAFLCYKDQRSTILAVDNFNGISLHKRMIRVDHVEEYKVP 120

Query:   117 KDNKYTDEETKKLRTIGCAPGTEFGSILPVKTED--IKQEKD 156
             K  +  D+ETK+L   GCAP        P++ ++  IK+ K+
Sbjct:   121 KYKEDADDETKRLWEEGCAPKPVMREAAPMEVQEQRIKKAKE 162


>TAIR|locus:2075676 [details] [associations]
            symbol:AT3G47120 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0008150 "biological_process" evidence=ND] [GO:0008270 "zinc ion
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR000571
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00642 PROSITE:PS50102
            PROSITE:PS50103 SMART:SM00356 SMART:SM00360 EMBL:CP002686
            GenomeReviews:BA000014_GR GO:GO:0000166 GO:GO:0046872 GO:GO:0003677
            GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL133292
            EMBL:BT002472 EMBL:BT010369 IPI:IPI00540994 PIR:T45648
            RefSeq:NP_190296.1 UniGene:At.35841 HSSP:Q9V535
            ProteinModelPortal:Q9SD61 SMR:Q9SD61 IntAct:Q9SD61 PaxDb:Q9SD61
            PRIDE:Q9SD61 EnsemblPlants:AT3G47120.1 GeneID:823865
            KEGG:ath:AT3G47120 TAIR:At3g47120 eggNOG:COG0724
            HOGENOM:HOG000174091 InParanoid:Q9SD61 KO:K13107 OMA:GHEEDRS
            PhylomeDB:Q9SD61 ProtClustDB:CLSN2915690 Genevestigator:Q9SD61
            Uniprot:Q9SD61
        Length = 352

 Score = 416 (151.5 bits), Expect = 6.1e-39, P = 6.1e-39
 Identities = 76/130 (58%), Positives = 104/130 (80%)

Query:     1 MNPLTNVKNIKKLS--EQELSSGSKTSWHDQYKDSAWIFVGGLPYDLSEGDVICIFSQYG 58
             MNPLT VKN++K++  E +L    + SWH +YK+SA+++VGG+P+DL+EGD++ +FSQYG
Sbjct:     1 MNPLTQVKNLQKINARESDLGISDEASWHAKYKNSAYVYVGGIPFDLTEGDLLAVFSQYG 60

Query:    59 EIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHVNDYKPPKD 118
             EIV++NL+RDK TGKSKGF F+ YEDQRST+L+VDNLNG  VL RTI+VDH   YK  ++
Sbjct:    61 EIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILAVDNLNGALVLGRTIKVDHCGAYKKHEE 120

Query:   119 NKYTDEETKK 128
                 DEET++
Sbjct:   121 E---DEETRR 127


>POMBASE|SPBC887.05c [details] [associations]
            symbol:cwf29 "RNA-binding protein Cwf29" species:4896
            "Schizosaccharomyces pombe" [GO:0000245 "spliceosomal complex
            assembly" evidence=ISS] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005681 "spliceosomal
            complex" evidence=IEA] [GO:0005686 "U2 snRNP" evidence=ISS]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 PomBase:SPBC887.05c GO:GO:0000166 EMBL:CU329671
            Gene3D:3.30.70.330 GenomeReviews:CU329671_GR GO:GO:0005681
            GO:GO:0003723 GO:GO:0000245 GO:GO:0005686 eggNOG:COG0724
            HOGENOM:HOG000174091 KO:K13107 HSSP:Q14103 PIR:T40730
            RefSeq:NP_596479.1 ProteinModelPortal:O94290 IntAct:O94290
            STRING:O94290 EnsemblFungi:SPBC887.05c.1 GeneID:2541212
            KEGG:spo:SPBC887.05c OrthoDB:EOG441TN4 NextBio:20802324
            Uniprot:O94290
        Length = 217

 Score = 375 (137.1 bits), Expect = 1.3e-34, P = 1.3e-34
 Identities = 74/145 (51%), Positives = 101/145 (69%)

Query:     4 LTNVKNIKKLSEQELSSGSKTSWHDQYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNL 63
             + +++ I++L+EQEL     +SWH  Y DSA+I++G L +DL+E D++C+FS++GE V++
Sbjct:     1 MNSIRQIERLNEQELDKPFSSSWHQDYSDSAYIYIGNLDFDLNEDDILCVFSEFGEPVDI 60

Query:    64 NLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHVNDYKPPKDNKYTD 123
             NLVRDK TGKSKGF F+ YEDQRSTVL+VDN+  VK+L R +RVDHV  YK P+  K   
Sbjct:    61 NLVRDKETGKSKGFAFLKYEDQRSTVLAVDNMTNVKLLDRLVRVDHVASYKVPQKEK--- 117

Query:   124 EETKKLRTIGCAPGTEFGSILPVKT 148
              E   L  +G     E GS L V T
Sbjct:   118 -EPANLVPLG-----ESGSSLSVST 136


>DICTYBASE|DDB_G0294559 [details] [associations]
            symbol:DDB_G0294559 "RNA-binding region RNP-1
            domain-containing protein" species:44689 "Dictyostelium discoideum"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
            evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 dictyBase:DDB_G0294559 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 KO:K13107
            EMBL:AAFI02000058 OMA:VFSQNRY RefSeq:XP_001134546.1
            ProteinModelPortal:Q1ZXF8 EnsemblProtists:DDB0232419 GeneID:8624369
            KEGG:ddi:DDB_G0294559 ProtClustDB:CLSZ2847454 Uniprot:Q1ZXF8
        Length = 348

 Score = 369 (135.0 bits), Expect = 5.8e-34, P = 5.8e-34
 Identities = 70/119 (58%), Positives = 88/119 (73%)

Query:     1 MNPLTNVKNIKKLSEQELSSGSKTSWHDQYKDSAWIFVGGLPYDLSEGDVICIFSQYGEI 60
             M+ +  V+NI K  E  L+     SWH  Y  S +I+VGGL YDL+EGDVI IFSQYGEI
Sbjct:     1 MHRIREVQNINK-KELNLNISESASWHADYSHSPYIYVGGLNYDLNEGDVIAIFSQYGEI 59

Query:    61 VNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHVNDYKPPKDN 119
                NLVR+K TG+S+GFCF+ Y+ Q+STVL+VDNLNG+ +L +TI+VDHV DYK PK N
Sbjct:    60 SECNLVRNKETGRSQGFCFVGYDQQKSTVLAVDNLNGINLLGKTIKVDHVKDYKRPKKN 118


>GENEDB_PFALCIPARUM|PFC0865w [details] [associations]
            symbol:PFC0865w "RNA-binding protein, putative"
            species:5833 "Plasmodium falciparum" [GO:0003723 "RNA binding"
            evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 HOGENOM:HOG000174091 KO:K13107 EMBL:AL844502
            HSSP:P33240 RefSeq:XP_001351265.1 ProteinModelPortal:O97318
            IntAct:O97318 MINT:MINT-1567386 EnsemblProtists:PFC0865w:mRNA
            GeneID:814509 KEGG:pfa:PFC0865w EuPathDB:PlasmoDB:PF3D7_0319500
            OMA:HRRRENH ProtClustDB:CLSZ2432414 Uniprot:O97318
        Length = 309

 Score = 367 (134.2 bits), Expect = 9.5e-34, P = 9.5e-34
 Identities = 76/158 (48%), Positives = 109/158 (68%)

Query:     1 MNPLTNVKNIKKLSEQELSS-GSK-TSWHDQYKDSAWIFVGGLPYDLSEGDVICIFSQYG 58
             M     ++NI+KL+E EL + G+  +SWHDQY+DS++I++G L   L+EGD++ +FSQYG
Sbjct:     1 MGLFDKIRNIEKLNEAELKNIGNNDSSWHDQYRDSSYIYIGNLDNRLTEGDIVIVFSQYG 60

Query:    59 EIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHVNDYKPPKD 118
             E +++NLVRD  TGKSKG+CF+ Y DQRST+L+VDN NG K+L R + VDH+ +Y+ PK 
Sbjct:    61 EPIDVNLVRDNETGKSKGYCFLSYADQRSTILAVDNFNGYKLLERPLVVDHILNYRLPK- 119

Query:   119 NKYT-DEETKKLRTIGCAPGTEFGSILPVKTEDIKQEK 155
              KY  D +  + +  G A G   G    V++E IK  K
Sbjct:   120 -KYLKDADKNEYKPTG-AEGQGIGVYNVVESE-IKLSK 154


>UNIPROTKB|O97318 [details] [associations]
            symbol:PFC0865w "RNA binding protein, putative"
            species:36329 "Plasmodium falciparum 3D7" [GO:0003723 "RNA binding"
            evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 HOGENOM:HOG000174091 KO:K13107 EMBL:AL844502
            HSSP:P33240 RefSeq:XP_001351265.1 ProteinModelPortal:O97318
            IntAct:O97318 MINT:MINT-1567386 EnsemblProtists:PFC0865w:mRNA
            GeneID:814509 KEGG:pfa:PFC0865w EuPathDB:PlasmoDB:PF3D7_0319500
            OMA:HRRRENH ProtClustDB:CLSZ2432414 Uniprot:O97318
        Length = 309

 Score = 367 (134.2 bits), Expect = 9.5e-34, P = 9.5e-34
 Identities = 76/158 (48%), Positives = 109/158 (68%)

Query:     1 MNPLTNVKNIKKLSEQELSS-GSK-TSWHDQYKDSAWIFVGGLPYDLSEGDVICIFSQYG 58
             M     ++NI+KL+E EL + G+  +SWHDQY+DS++I++G L   L+EGD++ +FSQYG
Sbjct:     1 MGLFDKIRNIEKLNEAELKNIGNNDSSWHDQYRDSSYIYIGNLDNRLTEGDIVIVFSQYG 60

Query:    59 EIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHVNDYKPPKD 118
             E +++NLVRD  TGKSKG+CF+ Y DQRST+L+VDN NG K+L R + VDH+ +Y+ PK 
Sbjct:    61 EPIDVNLVRDNETGKSKGYCFLSYADQRSTILAVDNFNGYKLLERPLVVDHILNYRLPK- 119

Query:   119 NKYT-DEETKKLRTIGCAPGTEFGSILPVKTEDIKQEK 155
              KY  D +  + +  G A G   G    V++E IK  K
Sbjct:   120 -KYLKDADKNEYKPTG-AEGQGIGVYNVVESE-IKLSK 154


>ASPGD|ASPL0000074275 [details] [associations]
            symbol:AN4665 species:162425 "Emericella nidulans"
            [GO:0008150 "biological_process" evidence=ND] [GO:0005575
            "cellular_component" evidence=ND] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 EMBL:BN001303 EMBL:AACD01000080 eggNOG:COG0724
            HOGENOM:HOG000174091 KO:K13107 OrthoDB:EOG441TN4 RefSeq:XP_662269.1
            ProteinModelPortal:Q5B465 STRING:Q5B465
            EnsemblFungi:CADANIAT00005768 GeneID:2872460 KEGG:ani:AN4665.2
            OMA:VFSQNRY Uniprot:Q5B465
        Length = 279

 Score = 356 (130.4 bits), Expect = 1.4e-32, P = 1.4e-32
 Identities = 69/133 (51%), Positives = 96/133 (72%)

Query:     4 LTNVKNIKKLSEQELSSG--SKTSWHDQYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIV 61
             + N++ ++ L+++EL      + SWH  Y+D+A+I++GGLP+DLSEGD++ IFSQYGE V
Sbjct:     1 MNNIRQVQALNKRELEHAVPPEASWHADYRDTAYIYIGGLPFDLSEGDIVTIFSQYGEPV 60

Query:    62 NLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHVNDYKPPKDNKY 121
             ++NLVRDK TGKS+GF F+ YEDQRST L+VDNL G  VL R +RVDH   YK   +++ 
Sbjct:    61 HINLVRDKETGKSRGFAFLKYEDQRSTDLAVDNLGGATVLGRVLRVDHTR-YKKRDEDED 119

Query:   122 TDEETKKL-RTIG 133
             T+   K L  T G
Sbjct:   120 TNNVAKLLGETAG 132


>UNIPROTKB|G4NKC1 [details] [associations]
            symbol:MGG_03086 "U2 snRNP component IST3" species:242507
            "Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
            evidence=ND] [GO:0008150 "biological_process" evidence=ND]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:CM001237 KO:K13107 RefSeq:XP_003720587.1
            ProteinModelPortal:G4NKC1 EnsemblFungi:MGG_03086T0 GeneID:2682639
            KEGG:mgr:MGG_03086 Uniprot:G4NKC1
        Length = 330

 Score = 301 (111.0 bits), Expect = 9.4e-27, P = 9.4e-27
 Identities = 63/123 (51%), Positives = 86/123 (69%)

Query:     4 LTNVKNIKKLSEQELSSG--SKTSWHDQYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIV 61
             +  +K I+ L+++E+  G   + SWH  Y+D+A+++ GGL   LSEGD+I IFSQYGE V
Sbjct:     1 MNQIKAIQALNKKEIEQGISPEASWHVDYRDTAFVYFGGLDDTLSEGDIITIFSQYGEPV 60

Query:    62 NLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHVNDYKPPKDNKY 121
              L LVRDK TGKS+GF ++ YEDQRST L+VDNL G  +  R +RVDH   YK  +D++ 
Sbjct:    61 FLKLVRDKETGKSRGFGWLKYEDQRSTDLAVDNLGGAVIKDRMMRVDHAR-YKG-RDDED 118

Query:   122 TDE 124
              DE
Sbjct:   119 DDE 121


>SGD|S000001444 [details] [associations]
            symbol:IST3 "Component of the U2 snRNP" species:4932
            "Saccharomyces cerevisiae" [GO:0000245 "spliceosomal complex
            assembly" evidence=IMP] [GO:0000349 "generation of catalytic
            spliceosome for first transesterification step" evidence=IMP]
            [GO:0006406 "mRNA export from nucleus" evidence=IMP] [GO:0005634
            "nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0000384 "first spliceosomal
            transesterification activity" evidence=IMP;IDA] [GO:0005686 "U2
            snRNP" evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
            evidence=IDA;IPI] [GO:0005681 "spliceosomal complex" evidence=IEA]
            [GO:0006397 "mRNA processing" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
            [GO:0070274 "RES complex" evidence=IDA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            SGD:S000001444 GO:GO:0005737 GO:GO:0000166 EMBL:BK006942
            Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0006406
            EMBL:X79743 EMBL:Z38062 GO:GO:0000349 GO:GO:0000245 GO:GO:0070274
            GO:GO:0005686 eggNOG:COG0724 HOGENOM:HOG000174091 KO:K13107
            OrthoDB:EOG441TN4 EMBL:AY558081 PIR:S48439 RefSeq:NP_012270.1
            ProteinModelPortal:P40565 SMR:P40565 DIP:DIP-2076N IntAct:P40565
            MINT:MINT-389778 STRING:P40565 PaxDb:P40565 PeptideAtlas:P40565
            EnsemblFungi:YIR005W GeneID:854821 KEGG:sce:YIR005W CYGD:YIR005w
            GeneTree:ENSGT00600000084414 OMA:YGVPVDV NextBio:977669
            Genevestigator:P40565 GermOnline:YIR005W Uniprot:P40565
        Length = 148

 Score = 295 (108.9 bits), Expect = 4.0e-26, P = 4.0e-26
 Identities = 55/127 (43%), Positives = 93/127 (73%)

Query:     7 VKNIKKLSEQELSSGSKT---SWHDQYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNL 63
             +  I++++++EL SG  +   SWH++YKD+A+I++G L  +L+EGD++ +FS+YG  V++
Sbjct:     1 MNKIQQINDKELQSGILSPHQSWHNEYKDNAYIYIGNLNRELTEGDILTVFSEYGVPVDV 60

Query:    64 NLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHVNDYKPPKD-NKYT 122
              L RD+ TG+S+GF ++ YEDQRST+L+VDNLNG K+  R +++DH   Y+P +   KY 
Sbjct:    61 ILSRDENTGESQGFAYLKYEDQRSTILAVDNLNGFKIGGRALKIDHTF-YRPKRSLQKYY 119

Query:   123 DEETKKL 129
             +   ++L
Sbjct:   120 EAVKEEL 126


>CGD|CAL0001156 [details] [associations]
            symbol:orf19.1045 species:5476 "Candida albicans" [GO:0035690
            "cellular response to drug" evidence=IMP] [GO:0005686 "U2 snRNP"
            evidence=IEA] [GO:0070274 "RES complex" evidence=IEA] [GO:0006406
            "mRNA export from nucleus" evidence=IEA] [GO:0000349 "generation of
            catalytic spliceosome for first transesterification step"
            evidence=IEA] [GO:0000245 "spliceosomal complex assembly"
            evidence=IEA] [GO:0000384 "first spliceosomal transesterification
            activity" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 CGD:CAL0001156
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0035690
            EMBL:AACQ01000121 EMBL:AACQ01000120 KO:K13107 RefSeq:XP_713650.1
            RefSeq:XP_713695.1 ProteinModelPortal:Q59VP9 STRING:Q59VP9
            GeneID:3644670 GeneID:3644701 KEGG:cal:CaO19.1045
            KEGG:cal:CaO19.8647 eggNOG:NOG308885 Uniprot:Q59VP9
        Length = 353

 Score = 254 (94.5 bits), Expect = 9.0e-22, P = 9.0e-22
 Identities = 48/123 (39%), Positives = 84/123 (68%)

Query:     4 LTNVKNIKKLSEQELSSGS--KTSWHDQYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIV 61
             +  +K I +++++EL+S +  K+SWH  Y+D+ ++++G +PY+L+  D+I IFSQYG   
Sbjct:    94 MNTIKQINQINQKELNSQTSYKSSWHYDYRDTNYLYIGNIPYNLTTKDLIIIFSQYGIPT 153

Query:    62 NLNLVRDKITGKS-KGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHVNDYKPPKDNK 120
             ++NL++DK + K  +GF F+ Y + +S +L++DN NG+K+  R ++VDH N YK   D  
Sbjct:   154 HINLIKDKESSKHHRGFGFLKYANFKSCILAIDNFNGIKLGDRYLKVDH-NYYKLRGDEN 212

Query:   121 YTD 123
               D
Sbjct:   213 EDD 215


>UNIPROTKB|Q59VP9 [details] [associations]
            symbol:IST3 "Putative uncharacterized protein IST3"
            species:237561 "Candida albicans SC5314" [GO:0035690 "cellular
            response to drug" evidence=IMP] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            CGD:CAL0001156 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GO:GO:0035690 EMBL:AACQ01000121 EMBL:AACQ01000120 KO:K13107
            RefSeq:XP_713650.1 RefSeq:XP_713695.1 ProteinModelPortal:Q59VP9
            STRING:Q59VP9 GeneID:3644670 GeneID:3644701 KEGG:cal:CaO19.1045
            KEGG:cal:CaO19.8647 eggNOG:NOG308885 Uniprot:Q59VP9
        Length = 353

 Score = 254 (94.5 bits), Expect = 9.0e-22, P = 9.0e-22
 Identities = 48/123 (39%), Positives = 84/123 (68%)

Query:     4 LTNVKNIKKLSEQELSSGS--KTSWHDQYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIV 61
             +  +K I +++++EL+S +  K+SWH  Y+D+ ++++G +PY+L+  D+I IFSQYG   
Sbjct:    94 MNTIKQINQINQKELNSQTSYKSSWHYDYRDTNYLYIGNIPYNLTTKDLIIIFSQYGIPT 153

Query:    62 NLNLVRDKITGKS-KGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHVNDYKPPKDNK 120
             ++NL++DK + K  +GF F+ Y + +S +L++DN NG+K+  R ++VDH N YK   D  
Sbjct:   154 HINLIKDKESSKHHRGFGFLKYANFKSCILAIDNFNGIKLGDRYLKVDH-NYYKLRGDEN 212

Query:   121 YTD 123
               D
Sbjct:   213 EDD 215


>UNIPROTKB|G4MR34 [details] [associations]
            symbol:MGG_09885 "Cleavage stimulation factor 64-kDa
            subunit" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
            "cellular_component" evidence=ND] [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 EMBL:CM001231 KO:K14407 InterPro:IPR025742
            InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304 RefSeq:XP_003709978.1
            ProteinModelPortal:G4MR34 SMR:G4MR34 EnsemblFungi:MGG_09885T0
            GeneID:2680929 KEGG:mgr:MGG_09885 Uniprot:G4MR34
        Length = 305

 Score = 180 (68.4 bits), Expect = 1.1e-13, P = 1.1e-13
 Identities = 37/80 (46%), Positives = 51/80 (63%)

Query:    36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
             +FVG +PY LSE  +  IFS+ G+++N  LV D+ TGK KGF F  Y D  S   +V NL
Sbjct:    10 VFVGNIPYGLSEEQITDIFSRAGKVLNFRLVYDRETGKPKGFGFAEYPDNDSAASAVRNL 69

Query:    96 NGVKVLSRTIRVDHVNDYKP 115
             N  +++ R +RVD  N+ KP
Sbjct:    70 NDTEIMGRKLRVDFSNE-KP 88


>UNIPROTKB|Q5ZLS0 [details] [associations]
            symbol:CSTF2 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
            CTD:1478 HOVERGEN:HBG051145 KO:K14407 InterPro:IPR025742
            InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
            GeneTree:ENSGT00550000074641 HOGENOM:HOG000214372 EMBL:AADN02013338
            EMBL:AJ719664 IPI:IPI00603977 RefSeq:NP_001006433.1
            UniGene:Gga.7714 SMR:Q5ZLS0 STRING:Q5ZLS0
            Ensembl:ENSGALT00000010924 GeneID:422258 KEGG:gga:422258
            NextBio:20824917 Uniprot:Q5ZLS0
        Length = 475

 Score = 173 (66.0 bits), Expect = 2.5e-12, P = 2.5e-12
 Identities = 48/117 (41%), Positives = 67/117 (57%)

Query:    36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
             +FVG +PY+ +E  +  IFS+ G +V+  LV D+ TGK KG+ F  Y+DQ + + ++ NL
Sbjct:    18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77

Query:    96 NGVKVLSRTIRVDHVNDYKPPKDNKYTDEETKKLRTIGCAPGTE--FGSILPVKTED 150
             NG +   R +RVD+    K    NK   EE K L T G AP  E  +G   PV  ED
Sbjct:    78 NGREFSGRALRVDNAASEK----NK---EELKSLGT-G-APIIESPYGD--PVNPED 123


>MGI|MGI:1343054 [details] [associations]
            symbol:Cstf2 "cleavage stimulation factor, 3' pre-RNA
            subunit 2" species:10090 "Mus musculus" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0005847 "mRNA cleavage and
            polyadenylation specificity factor complex" evidence=ISO]
            [GO:0006397 "mRNA processing" evidence=IEA] [GO:0071920 "cleavage
            body" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1343054
            GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
            EMBL:AL671915 eggNOG:COG0724 GO:GO:0005847 CTD:1478
            HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407 GO:GO:0071920
            InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
            OrthoDB:EOG4640BW EMBL:AF317552 EMBL:AK032817 EMBL:AK088260
            EMBL:BC036719 IPI:IPI00457575 IPI:IPI00607981 RefSeq:NP_573459.1
            UniGene:Mm.67938 ProteinModelPortal:Q8BIQ5 SMR:Q8BIQ5 STRING:Q8BIQ5
            PhosphoSite:Q8BIQ5 REPRODUCTION-2DPAGE:IPI00607981 PaxDb:Q8BIQ5
            PRIDE:Q8BIQ5 Ensembl:ENSMUST00000033609 Ensembl:ENSMUST00000113286
            GeneID:108062 KEGG:mmu:108062 UCSC:uc009ufi.1 UCSC:uc009ufj.1
            GeneTree:ENSGT00550000074641 InParanoid:A2AEK0 NextBio:359962
            Bgee:Q8BIQ5 CleanEx:MM_CSTF2 Genevestigator:Q8BIQ5
            GermOnline:ENSMUSG00000031256 Uniprot:Q8BIQ5
        Length = 580

 Score = 174 (66.3 bits), Expect = 2.8e-12, P = 2.8e-12
 Identities = 52/130 (40%), Positives = 72/130 (55%)

Query:    36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
             +FVG +PY+ +E  +  IFS+ G +V+  LV D+ TGK KG+ F  Y+DQ + + ++ NL
Sbjct:    18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77

Query:    96 NGVKVLSRTIRVDHVNDYKPPKDNKYTDEETKKLRTIGCAPGTE--FG-SILPVKT-EDI 151
             NG +   R +RVD+    K    NK   EE K L T G AP  E  +G SI P    E I
Sbjct:    78 NGREFSGRALRVDNAASEK----NK---EELKSLGT-G-APVIESPYGESISPEDAPESI 128

Query:   152 KQEKDSKPTE 161
              +   S P E
Sbjct:   129 SKAVASLPPE 138


>UNIPROTKB|E2R1C1 [details] [associations]
            symbol:CSTF2T "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
            InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
            GeneTree:ENSGT00550000074641 EMBL:AAEX03014924 EMBL:AAEX03014925
            Ensembl:ENSCAFT00000024677 Uniprot:E2R1C1
        Length = 435

 Score = 171 (65.3 bits), Expect = 3.4e-12, P = 3.4e-12
 Identities = 42/115 (36%), Positives = 63/115 (54%)

Query:    36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
             +FVG +PY+ +E  +  IFS+ G +V+  LV D+ TGK KG+ F  Y+DQ + + ++ NL
Sbjct:    22 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 81

Query:    96 NGVKVLSRTIRVDHVNDYKPPKDNKYTDEETKKLRTIGCAPGTEFGSILPVKTED 150
             NG +   R +RVD+    K    NK   EE K L        + +G   P+  ED
Sbjct:    82 NGREFSGRALRVDNAASEK----NK---EELKSLGPAAPVVDSPYGD--PIDPED 127


>UNIPROTKB|E9PID8 [details] [associations]
            symbol:CSTF2 "Cleavage stimulation factor subunit 2"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            InterPro:IPR025742 Pfam:PF14327 EMBL:Z83819 EMBL:Z95327
            HGNC:HGNC:2484 IPI:IPI01012987 ProteinModelPortal:E9PID8 SMR:E9PID8
            Ensembl:ENST00000475126 ArrayExpress:E9PID8 Bgee:E9PID8
            Uniprot:E9PID8
        Length = 438

 Score = 171 (65.3 bits), Expect = 3.5e-12, P = 3.5e-12
 Identities = 51/130 (39%), Positives = 72/130 (55%)

Query:    36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
             +FVG +PY+ +E  +  IFS+ G +V+  LV D+ TGK KG+ F  Y+DQ + + ++ NL
Sbjct:    18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77

Query:    96 NGVKVLSRTIRVDHVNDYKPPKDNKYTDEETKKLRTIGCAPGTE--FG-SILPVKT-EDI 151
             NG +   R +RVD+    K    NK   EE K L T G AP  E  +G +I P    E I
Sbjct:    78 NGREFSGRALRVDNAASEK----NK---EELKSLGT-G-APVIESPYGETISPEDAPESI 128

Query:   152 KQEKDSKPTE 161
              +   S P E
Sbjct:   129 SKAVASLPPE 138


>UNIPROTKB|E1BVJ6 [details] [associations]
            symbol:CSTF2 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
            InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
            GeneTree:ENSGT00550000074641 EMBL:AADN02013338 IPI:IPI00821790
            Ensembl:ENSGALT00000039789 ArrayExpress:E1BVJ6 Uniprot:E1BVJ6
        Length = 592

 Score = 173 (66.0 bits), Expect = 3.7e-12, P = 3.7e-12
 Identities = 48/117 (41%), Positives = 67/117 (57%)

Query:    36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
             +FVG +PY+ +E  +  IFS+ G +V+  LV D+ TGK KG+ F  Y+DQ + + ++ NL
Sbjct:    18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77

Query:    96 NGVKVLSRTIRVDHVNDYKPPKDNKYTDEETKKLRTIGCAPGTE--FGSILPVKTED 150
             NG +   R +RVD+    K    NK   EE K L T G AP  E  +G   PV  ED
Sbjct:    78 NGREFSGRALRVDNAASEK----NK---EELKSLGT-G-APIIESPYGD--PVNPED 123


>WB|WBGene00000774 [details] [associations]
            symbol:cpf-2 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
            "embryo development ending in birth or egg hatching" evidence=IMP]
            [GO:0000003 "reproduction" evidence=IMP] [GO:0016246 "RNA
            interference" evidence=IMP] [GO:0006898 "receptor-mediated
            endocytosis" evidence=IMP] [GO:0040027 "negative regulation of
            vulval development" evidence=IMP] [GO:0016607 "nuclear speck"
            evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0006898
            GO:GO:0016246 GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330
            GO:GO:0000003 GO:GO:0003676 GO:GO:0040027 eggNOG:COG0724 KO:K14407
            InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
            GeneTree:ENSGT00550000074641 HSSP:P33240 EMBL:Z83230 PIR:T22767
            RefSeq:NP_499734.1 ProteinModelPortal:O45577 SMR:O45577
            DIP:DIP-27144N IntAct:O45577 MINT:MINT-1049050 STRING:O45577
            PaxDb:O45577 EnsemblMetazoa:F56A8.6.1 EnsemblMetazoa:F56A8.6.2
            GeneID:176742 KEGG:cel:CELE_F56A8.6 UCSC:F56A8.6.1 CTD:176742
            WormBase:F56A8.6 HOGENOM:HOG000214372 InParanoid:O45577 OMA:VENPYGE
            NextBio:893824 Uniprot:O45577
        Length = 336

 Score = 168 (64.2 bits), Expect = 3.8e-12, P = 3.8e-12
 Identities = 33/91 (36%), Positives = 57/91 (62%)

Query:    18 LSSGSKTSWHDQYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGF 77
             +S G K+S     +    +FVG + YD+SE  +  IFS+ G ++++ +V D+ TGK KG+
Sbjct:     2 MSGGYKSSGVGNDRSQRSVFVGNISYDVSEDTIRSIFSKAGNVLSIKMVHDRETGKPKGY 61

Query:    78 CFICYEDQRSTVLSVDNLNGVKVLSRTIRVD 108
              FI + D ++  +++ NLNG ++  R +RVD
Sbjct:    62 GFIEFPDIQTAEVAIRNLNGYELSGRILRVD 92


>UNIPROTKB|E1C8T0 [details] [associations]
            symbol:CSTF2 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
            InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
            GeneTree:ENSGT00550000074641 OMA:GMEARSM EMBL:AADN02013338
            IPI:IPI00682692 Ensembl:ENSGALT00000010922 ArrayExpress:E1C8T0
            Uniprot:E1C8T0
        Length = 608

 Score = 173 (66.0 bits), Expect = 3.8e-12, P = 3.8e-12
 Identities = 48/117 (41%), Positives = 67/117 (57%)

Query:    36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
             +FVG +PY+ +E  +  IFS+ G +V+  LV D+ TGK KG+ F  Y+DQ + + ++ NL
Sbjct:    18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77

Query:    96 NGVKVLSRTIRVDHVNDYKPPKDNKYTDEETKKLRTIGCAPGTE--FGSILPVKTED 150
             NG +   R +RVD+    K    NK   EE K L T G AP  E  +G   PV  ED
Sbjct:    78 NGREFSGRALRVDNAASEK----NK---EELKSLGT-G-APIIESPYGD--PVNPED 123


>UNIPROTKB|J9NX69 [details] [associations]
            symbol:CSTF2 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
            Pfam:PF14327 GeneTree:ENSGT00550000074641 EMBL:AAEX03026714
            Ensembl:ENSCAFT00000049845 Uniprot:J9NX69
        Length = 509

 Score = 171 (65.3 bits), Expect = 4.6e-12, P = 4.6e-12
 Identities = 51/130 (39%), Positives = 72/130 (55%)

Query:    36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
             +FVG +PY+ +E  +  IFS+ G +V+  LV D+ TGK KG+ F  Y+DQ + + ++ NL
Sbjct:    18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77

Query:    96 NGVKVLSRTIRVDHVNDYKPPKDNKYTDEETKKLRTIGCAPGTE--FG-SILPVKT-EDI 151
             NG +   R +RVD+    K    NK   EE K L T G AP  E  +G +I P    E I
Sbjct:    78 NGREFSGRALRVDNAASEK----NK---EELKSLGT-G-APVIESPYGETISPEDAPESI 128

Query:   152 KQEKDSKPTE 161
              +   S P E
Sbjct:   129 SKAVASLPPE 138


>UNIPROTKB|F1S1L9 [details] [associations]
            symbol:LOC100515986 "Uncharacterized protein" species:9823
            "Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K14407
            InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
            EMBL:CU861981 Ensembl:ENSSSCT00000013653 KEGG:ssc:100515986
            Uniprot:F1S1L9
        Length = 551

 Score = 171 (65.3 bits), Expect = 5.3e-12, P = 5.3e-12
 Identities = 51/130 (39%), Positives = 72/130 (55%)

Query:    36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
             +FVG +PY+ +E  +  IFS+ G +V+  LV D+ TGK KG+ F  Y+DQ + + ++ NL
Sbjct:    18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77

Query:    96 NGVKVLSRTIRVDHVNDYKPPKDNKYTDEETKKLRTIGCAPGTE--FG-SILPVKT-EDI 151
             NG +   R +RVD+    K    NK   EE K L T G AP  E  +G +I P    E I
Sbjct:    78 NGREFSGRALRVDNAASEK----NK---EELKSLGT-G-APVIESPYGETISPEDAPESI 128

Query:   152 KQEKDSKPTE 161
              +   S P E
Sbjct:   129 SKAVASLPPE 138


>UNIPROTKB|K7GQE7 [details] [associations]
            symbol:LOC100515986 "Uncharacterized protein" species:9823
            "Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            Gene3D:3.30.70.330 InterPro:IPR025742 InterPro:IPR026896
            Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641
            EMBL:CU861981 Ensembl:ENSSSCT00000033718 Uniprot:K7GQE7
        Length = 555

 Score = 171 (65.3 bits), Expect = 5.4e-12, P = 5.4e-12
 Identities = 51/130 (39%), Positives = 72/130 (55%)

Query:    36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
             +FVG +PY+ +E  +  IFS+ G +V+  LV D+ TGK KG+ F  Y+DQ + + ++ NL
Sbjct:    18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77

Query:    96 NGVKVLSRTIRVDHVNDYKPPKDNKYTDEETKKLRTIGCAPGTE--FG-SILPVKT-EDI 151
             NG +   R +RVD+    K    NK   EE K L T G AP  E  +G +I P    E I
Sbjct:    78 NGREFSGRALRVDNAASEK----NK---EELKSLGT-G-APVIESPYGETISPEDAPESI 128

Query:   152 KQEKDSKPTE 161
              +   S P E
Sbjct:   129 SKAVASLPPE 138


>UNIPROTKB|J9P8Y3 [details] [associations]
            symbol:CSTF2T "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
            InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
            GeneTree:ENSGT00550000074641 OMA:METCAME EMBL:AAEX03014924
            EMBL:AAEX03014925 Ensembl:ENSCAFT00000049986 Uniprot:J9P8Y3
        Length = 558

 Score = 171 (65.3 bits), Expect = 5.5e-12, P = 5.5e-12
 Identities = 42/115 (36%), Positives = 63/115 (54%)

Query:    36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
             +FVG +PY+ +E  +  IFS+ G +V+  LV D+ TGK KG+ F  Y+DQ + + ++ NL
Sbjct:    18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77

Query:    96 NGVKVLSRTIRVDHVNDYKPPKDNKYTDEETKKLRTIGCAPGTEFGSILPVKTED 150
             NG +   R +RVD+    K    NK   EE K L        + +G   P+  ED
Sbjct:    78 NGREFSGRALRVDNAASEK----NK---EELKSLGPAAPVVDSPYGD--PIDPED 123


>UNIPROTKB|Q8HXM1 [details] [associations]
            symbol:CSTF2 "Cleavage stimulation factor subunit 2"
            species:9913 "Bos taurus" [GO:0071920 "cleavage body" evidence=ISS]
            [GO:0005847 "mRNA cleavage and polyadenylation specificity factor
            complex" evidence=ISS] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
            GO:GO:0005847 EMBL:AY130297 IPI:IPI00694260 RefSeq:NP_777110.1
            UniGene:Bt.3723 UniGene:Bt.78724 ProteinModelPortal:Q8HXM1
            SMR:Q8HXM1 STRING:Q8HXM1 PRIDE:Q8HXM1 GeneID:282588 KEGG:bta:282588
            CTD:1478 HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
            NextBio:20806300 ArrayExpress:Q8HXM1 GO:GO:0071920
            InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
            Uniprot:Q8HXM1
        Length = 572

 Score = 171 (65.3 bits), Expect = 5.7e-12, P = 5.7e-12
 Identities = 51/130 (39%), Positives = 72/130 (55%)

Query:    36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
             +FVG +PY+ +E  +  IFS+ G +V+  LV D+ TGK KG+ F  Y+DQ + + ++ NL
Sbjct:    18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77

Query:    96 NGVKVLSRTIRVDHVNDYKPPKDNKYTDEETKKLRTIGCAPGTE--FG-SILPVKT-EDI 151
             NG +   R +RVD+    K    NK   EE K L T G AP  E  +G +I P    E I
Sbjct:    78 NGREFSGRALRVDNAASEK----NK---EELKSLGT-G-APVIESPYGETISPEDAPESI 128

Query:   152 KQEKDSKPTE 161
              +   S P E
Sbjct:   129 SKAVASLPPE 138


>UNIPROTKB|K7GS58 [details] [associations]
            symbol:LOC100515986 "Uncharacterized protein" species:9823
            "Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            Gene3D:3.30.70.330 InterPro:IPR025742 InterPro:IPR026896
            Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641
            EMBL:CU861981 GeneID:100515986 RefSeq:XP_003135279.1
            Ensembl:ENSSSCT00000034722 Uniprot:K7GS58
        Length = 572

 Score = 171 (65.3 bits), Expect = 5.7e-12, P = 5.7e-12
 Identities = 51/130 (39%), Positives = 72/130 (55%)

Query:    36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
             +FVG +PY+ +E  +  IFS+ G +V+  LV D+ TGK KG+ F  Y+DQ + + ++ NL
Sbjct:    18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77

Query:    96 NGVKVLSRTIRVDHVNDYKPPKDNKYTDEETKKLRTIGCAPGTE--FG-SILPVKT-EDI 151
             NG +   R +RVD+    K    NK   EE K L T G AP  E  +G +I P    E I
Sbjct:    78 NGREFSGRALRVDNAASEK----NK---EELKSLGT-G-APVIESPYGETISPEDAPESI 128

Query:   152 KQEKDSKPTE 161
              +   S P E
Sbjct:   129 SKAVASLPPE 138


>UNIPROTKB|E2RP40 [details] [associations]
            symbol:CSTF2 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 CTD:1478 KO:K14407
            InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
            GeneTree:ENSGT00550000074641 OMA:GMEARSM EMBL:AAEX03026714
            RefSeq:XP_861405.1 Ensembl:ENSCAFT00000027826 GeneID:492015
            KEGG:cfa:492015 Uniprot:E2RP40
        Length = 577

 Score = 171 (65.3 bits), Expect = 5.8e-12, P = 5.8e-12
 Identities = 51/130 (39%), Positives = 72/130 (55%)

Query:    36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
             +FVG +PY+ +E  +  IFS+ G +V+  LV D+ TGK KG+ F  Y+DQ + + ++ NL
Sbjct:    18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77

Query:    96 NGVKVLSRTIRVDHVNDYKPPKDNKYTDEETKKLRTIGCAPGTE--FG-SILPVKT-EDI 151
             NG +   R +RVD+    K    NK   EE K L T G AP  E  +G +I P    E I
Sbjct:    78 NGREFSGRALRVDNAASEK----NK---EELKSLGT-G-APVIESPYGETISPEDAPESI 128

Query:   152 KQEKDSKPTE 161
              +   S P E
Sbjct:   129 SKAVASLPPE 138


>UNIPROTKB|P33240 [details] [associations]
            symbol:CSTF2 "Cleavage stimulation factor subunit 2"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
            "protein binding" evidence=IPI] [GO:0005847 "mRNA cleavage and
            polyadenylation specificity factor complex" evidence=IDA]
            [GO:0071920 "cleavage body" evidence=IDA] [GO:0006378 "mRNA
            polyadenylation" evidence=TAS] [GO:0006379 "mRNA cleavage"
            evidence=TAS] [GO:0000398 "mRNA splicing, via spliceosome"
            evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366
            "transcription from RNA polymerase II promoter" evidence=TAS]
            [GO:0006369 "termination of RNA polymerase II transcription"
            evidence=TAS] [GO:0006397 "mRNA processing" evidence=TAS]
            [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467 "gene
            expression" evidence=TAS] [GO:0031124 "mRNA 3'-end processing"
            evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
            "nucleolus" evidence=IDA] Reactome:REACT_71 InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0006378
            GO:GO:0003723 GO:GO:0000398 Reactome:REACT_1788 eggNOG:COG0724
            GO:GO:0005847 GO:GO:0006379 GO:GO:0006369 Reactome:REACT_78
            CTD:1478 HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
            GO:GO:0071920 InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327
            Pfam:PF14304 EMBL:M85085 EMBL:BT009778 EMBL:Z83819 EMBL:Z95327
            EMBL:BC017712 EMBL:BC033135 IPI:IPI00013256 IPI:IPI00607841
            PIR:A40220 RefSeq:NP_001316.1 UniGene:Hs.132370 PDB:1P1T PDB:2J8P
            PDBsum:1P1T PDBsum:2J8P ProteinModelPortal:P33240 SMR:P33240
            DIP:DIP-36129N IntAct:P33240 MINT:MINT-1375144 STRING:P33240
            PhosphoSite:P33240 DMDM:461847 PaxDb:P33240 PRIDE:P33240 DNASU:1478
            Ensembl:ENST00000372972 Ensembl:ENST00000413437 GeneID:1478
            KEGG:hsa:1478 UCSC:uc004egh.3 UCSC:uc004egi.3 GeneCards:GC0XP100075
            HGNC:HGNC:2484 HPA:CAB004680 HPA:HPA000427 MIM:600368
            neXtProt:NX_P33240 PharmGKB:PA26986 InParanoid:P33240
            OrthoDB:EOG4640BW PhylomeDB:P33240 EvolutionaryTrace:P33240
            GenomeRNAi:1478 NextBio:6073 ArrayExpress:P33240 Bgee:P33240
            CleanEx:HS_CSTF2 Genevestigator:P33240 GermOnline:ENSG00000101811
            Uniprot:P33240
        Length = 577

 Score = 171 (65.3 bits), Expect = 5.8e-12, P = 5.8e-12
 Identities = 51/130 (39%), Positives = 72/130 (55%)

Query:    36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
             +FVG +PY+ +E  +  IFS+ G +V+  LV D+ TGK KG+ F  Y+DQ + + ++ NL
Sbjct:    18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77

Query:    96 NGVKVLSRTIRVDHVNDYKPPKDNKYTDEETKKLRTIGCAPGTE--FG-SILPVKT-EDI 151
             NG +   R +RVD+    K    NK   EE K L T G AP  E  +G +I P    E I
Sbjct:    78 NGREFSGRALRVDNAASEK----NK---EELKSLGT-G-APVIESPYGETISPEDAPESI 128

Query:   152 KQEKDSKPTE 161
              +   S P E
Sbjct:   129 SKAVASLPPE 138


>UNIPROTKB|Q5RDA3 [details] [associations]
            symbol:CSTF2 "Cleavage stimulation factor subunit 2"
            species:9601 "Pongo abelii" [GO:0005847 "mRNA cleavage and
            polyadenylation specificity factor complex" evidence=ISS]
            [GO:0071920 "cleavage body" evidence=ISS] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
            GO:GO:0005847 CTD:1478 HOVERGEN:HBG051145 KO:K14407 GO:GO:0071920
            InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
            EMBL:CR858012 RefSeq:NP_001125111.1 UniGene:Pab.17359
            ProteinModelPortal:Q5RDA3 SMR:Q5RDA3 GeneID:100171993
            KEGG:pon:100171993 InParanoid:Q5RDA3 Uniprot:Q5RDA3
        Length = 577

 Score = 171 (65.3 bits), Expect = 5.8e-12, P = 5.8e-12
 Identities = 51/130 (39%), Positives = 72/130 (55%)

Query:    36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
             +FVG +PY+ +E  +  IFS+ G +V+  LV D+ TGK KG+ F  Y+DQ + + ++ NL
Sbjct:    18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77

Query:    96 NGVKVLSRTIRVDHVNDYKPPKDNKYTDEETKKLRTIGCAPGTE--FG-SILPVKT-EDI 151
             NG +   R +RVD+    K    NK   EE K L T G AP  E  +G +I P    E I
Sbjct:    78 NGREFSGRALRVDNAASEK----NK---EELKSLGT-G-APVIESPYGETISPEDAPESI 128

Query:   152 KQEKDSKPTE 161
              +   S P E
Sbjct:   129 SKAVASLPPE 138


>UNIPROTKB|F1MVI1 [details] [associations]
            symbol:CSTF2 "Cleavage stimulation factor subunit 2"
            species:9913 "Bos taurus" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
            GeneTree:ENSGT00550000074641 EMBL:DAAA02070747 EMBL:DAAA02070748
            IPI:IPI00829562 Ensembl:ENSBTAT00000045511 ArrayExpress:F1MVI1
            Uniprot:F1MVI1
        Length = 592

 Score = 171 (65.3 bits), Expect = 6.0e-12, P = 6.0e-12
 Identities = 51/130 (39%), Positives = 72/130 (55%)

Query:    36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
             +FVG +PY+ +E  +  IFS+ G +V+  LV D+ TGK KG+ F  Y+DQ + + ++ NL
Sbjct:    18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77

Query:    96 NGVKVLSRTIRVDHVNDYKPPKDNKYTDEETKKLRTIGCAPGTE--FG-SILPVKT-EDI 151
             NG +   R +RVD+    K    NK   EE K L T G AP  E  +G +I P    E I
Sbjct:    78 NGREFSGRALRVDNAASEK----NK---EELKSLGT-G-APVIESPYGETISPEDAPESI 128

Query:   152 KQEKDSKPTE 161
              +   S P E
Sbjct:   129 SKAVASLPPE 138


>UNIPROTKB|I3LE23 [details] [associations]
            symbol:LOC100515986 "Uncharacterized protein" species:9823
            "Sus scrofa" [GO:0071920 "cleavage body" evidence=IEA] [GO:0005847
            "mRNA cleavage and polyadenylation specificity factor complex"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005847
            KO:K14407 GO:GO:0071920 InterPro:IPR025742 InterPro:IPR026896
            Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641 OMA:GMEARSM
            EMBL:CU861981 KEGG:ssc:100515986 RefSeq:XP_003360436.1
            Ensembl:ENSSSCT00000027214 GeneID:100515986 Uniprot:I3LE23
        Length = 592

 Score = 171 (65.3 bits), Expect = 6.0e-12, P = 6.0e-12
 Identities = 51/130 (39%), Positives = 72/130 (55%)

Query:    36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
             +FVG +PY+ +E  +  IFS+ G +V+  LV D+ TGK KG+ F  Y+DQ + + ++ NL
Sbjct:    18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77

Query:    96 NGVKVLSRTIRVDHVNDYKPPKDNKYTDEETKKLRTIGCAPGTE--FG-SILPVKT-EDI 151
             NG +   R +RVD+    K    NK   EE K L T G AP  E  +G +I P    E I
Sbjct:    78 NGREFSGRALRVDNAASEK----NK---EELKSLGT-G-APVIESPYGETISPEDAPESI 128

Query:   152 KQEKDSKPTE 161
              +   S P E
Sbjct:   129 SKAVASLPPE 138


>UNIPROTKB|E7EWR4 [details] [associations]
            symbol:CSTF2 "Cleavage stimulation factor subunit 2"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
            evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
            InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304 EMBL:Z83819
            EMBL:Z95327 HGNC:HGNC:2484 IPI:IPI00902991
            ProteinModelPortal:E7EWR4 SMR:E7EWR4 Ensembl:ENST00000415585
            UCSC:uc010nnd.3 OMA:GMEARSM ArrayExpress:E7EWR4 Bgee:E7EWR4
            Uniprot:E7EWR4
        Length = 597

 Score = 171 (65.3 bits), Expect = 6.1e-12, P = 6.1e-12
 Identities = 51/130 (39%), Positives = 72/130 (55%)

Query:    36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
             +FVG +PY+ +E  +  IFS+ G +V+  LV D+ TGK KG+ F  Y+DQ + + ++ NL
Sbjct:    18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77

Query:    96 NGVKVLSRTIRVDHVNDYKPPKDNKYTDEETKKLRTIGCAPGTE--FG-SILPVKT-EDI 151
             NG +   R +RVD+    K    NK   EE K L T G AP  E  +G +I P    E I
Sbjct:    78 NGREFSGRALRVDNAASEK----NK---EELKSLGT-G-APVIESPYGETISPEDAPESI 128

Query:   152 KQEKDSKPTE 161
              +   S P E
Sbjct:   129 SKAVASLPPE 138


>UNIPROTKB|G1K177 [details] [associations]
            symbol:CSTF2 "Cleavage stimulation factor subunit 2"
            species:9913 "Bos taurus" [GO:0071920 "cleavage body" evidence=IEA]
            [GO:0005847 "mRNA cleavage and polyadenylation specificity factor
            complex" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GO:GO:0005847 GO:GO:0071920 InterPro:IPR025742 InterPro:IPR026896
            Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641 OMA:GMEARSM
            EMBL:DAAA02070747 EMBL:DAAA02070748 Ensembl:ENSBTAT00000004619
            Uniprot:G1K177
        Length = 644

 Score = 171 (65.3 bits), Expect = 6.9e-12, P = 6.9e-12
 Identities = 51/130 (39%), Positives = 72/130 (55%)

Query:    36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
             +FVG +PY+ +E  +  IFS+ G +V+  LV D+ TGK KG+ F  Y+DQ + + ++ NL
Sbjct:    18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77

Query:    96 NGVKVLSRTIRVDHVNDYKPPKDNKYTDEETKKLRTIGCAPGTE--FG-SILPVKT-EDI 151
             NG +   R +RVD+    K    NK   EE K L T G AP  E  +G +I P    E I
Sbjct:    78 NGREFSGRALRVDNAASEK----NK---EELKSLGT-G-APVIESPYGETISPEDAPESI 128

Query:   152 KQEKDSKPTE 161
              +   S P E
Sbjct:   129 SKAVASLPPE 138


>ZFIN|ZDB-GENE-031118-2 [details] [associations]
            symbol:cstf2 "cleavage stimulation factor, 3'
            pre-RNA, subunit 2" species:7955 "Danio rerio" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0005575 "cellular_component"
            evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-031118-2 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 CTD:1478
            HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
            InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
            OrthoDB:EOG4640BW EMBL:BC065442 IPI:IPI00498643 RefSeq:NP_956408.2
            UniGene:Dr.113612 ProteinModelPortal:Q6P0U7 SMR:Q6P0U7
            STRING:Q6P0U7 PRIDE:Q6P0U7 GeneID:386806 KEGG:dre:386806
            InParanoid:Q6P0U7 NextBio:20814024 ArrayExpress:Q6P0U7 Bgee:Q6P0U7
            Uniprot:Q6P0U7
        Length = 488

 Score = 168 (64.2 bits), Expect = 9.1e-12, P = 9.1e-12
 Identities = 50/130 (38%), Positives = 72/130 (55%)

Query:    36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
             +FVG +PY+ +E  +  IFS+ G +V+  LV D+ TGK KG+ F  Y+DQ + + ++ NL
Sbjct:    26 VFVGNIPYEATEEQLKDIFSEVGLVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 85

Query:    96 NGVKVLSRTIRVDHVNDYKPPKDNKYTDEETKKLRTIGCAPGTE--FGS-ILPVKT-EDI 151
             NG +   R +RVD+    K    NK   EE K L T G AP  E  +G   +P +  E I
Sbjct:    86 NGREFSGRALRVDNAASEK----NK---EELKSLGT-G-APIIESPYGDGCMPEEAPESI 136

Query:   152 KQEKDSKPTE 161
              +   S P E
Sbjct:   137 SRAVASLPPE 146


>UNIPROTKB|F1SD01 [details] [associations]
            symbol:CSTF2T "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0005622 "intracellular" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 GO:GO:0005622 KO:K14407 InterPro:IPR025742
            InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
            GeneTree:ENSGT00550000074641 CTD:23283 OMA:METCAME EMBL:CU407055
            RefSeq:XP_001926989.1 ProteinModelPortal:F1SD01
            Ensembl:ENSSSCT00000011415 GeneID:100157243 KEGG:ssc:100157243
            Uniprot:F1SD01
        Length = 615

 Score = 169 (64.5 bits), Expect = 1.1e-11, P = 1.1e-11
 Identities = 42/115 (36%), Positives = 63/115 (54%)

Query:    36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
             +FVG +PY+ +E  +  IFS+ G +V+  LV D+ TGK KG+ F  Y+DQ + + ++ NL
Sbjct:    18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77

Query:    96 NGVKVLSRTIRVDHVNDYKPPKDNKYTDEETKKLRTIGCAPGTEFGSILPVKTED 150
             NG +   R +RVD+    K    NK   EE K L        + +G   P+  ED
Sbjct:    78 NGREFSGRALRVDNAASEK----NK---EELKSLGPAAPIIDSPYGD--PIDPED 123


>UNIPROTKB|Q9H0L4 [details] [associations]
            symbol:CSTF2T "Cleavage stimulation factor subunit 2 tau
            variant" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0005622 "intracellular" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0000166 EMBL:CH471083
            GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0005622
            eggNOG:COG0724 HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
            InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
            OrthoDB:EOG4640BW EMBL:AY130299 EMBL:AL136747 EMBL:AK222574
            EMBL:AK314318 EMBL:BC028239 EMBL:AB014589 IPI:IPI00550906
            RefSeq:NP_056050.1 UniGene:Hs.591358 ProteinModelPortal:Q9H0L4
            SMR:Q9H0L4 IntAct:Q9H0L4 MINT:MINT-1461400 STRING:Q9H0L4
            PhosphoSite:Q9H0L4 DMDM:71153234 REPRODUCTION-2DPAGE:IPI00550906
            PaxDb:Q9H0L4 PeptideAtlas:Q9H0L4 PRIDE:Q9H0L4 DNASU:23283
            Ensembl:ENST00000331173 GeneID:23283 KEGG:hsa:23283 UCSC:uc001jjp.3
            CTD:23283 GeneCards:GC10M053455 HGNC:HGNC:17086 HPA:HPA039216
            MIM:611968 neXtProt:NX_Q9H0L4 PharmGKB:PA134933809
            InParanoid:Q9H0L4 OMA:METCAME PhylomeDB:Q9H0L4 GenomeRNAi:23283
            NextBio:45080 Bgee:Q9H0L4 CleanEx:HS_CSTF2T Genevestigator:Q9H0L4
            GermOnline:ENSG00000177613 Uniprot:Q9H0L4
        Length = 616

 Score = 169 (64.5 bits), Expect = 1.1e-11, P = 1.1e-11
 Identities = 42/115 (36%), Positives = 63/115 (54%)

Query:    36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
             +FVG +PY+ +E  +  IFS+ G +V+  LV D+ TGK KG+ F  Y+DQ + + ++ NL
Sbjct:    18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77

Query:    96 NGVKVLSRTIRVDHVNDYKPPKDNKYTDEETKKLRTIGCAPGTEFGSILPVKTED 150
             NG +   R +RVD+    K    NK   EE K L        + +G   P+  ED
Sbjct:    78 NGREFSGRALRVDNAASEK----NK---EELKSLGPAAPIIDSPYGD--PIDPED 123


>RGD|1310026 [details] [associations]
            symbol:Cstf2t "cleavage stimulation factor, 3' pre-RNA, subunit
            2, 64kDa, tau variant" species:10116 "Rattus norvegicus"
            [GO:0003723 "RNA binding" evidence=ISO] [GO:0005622 "intracellular"
            evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 RGD:1310026 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG051145
            InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
            EMBL:BC169065 IPI:IPI00562807 UniGene:Rn.1661
            ProteinModelPortal:B5DFH8 UCSC:RGD:1310026 Genevestigator:B5DFH8
            Uniprot:B5DFH8
        Length = 629

 Score = 169 (64.5 bits), Expect = 1.1e-11, P = 1.1e-11
 Identities = 42/115 (36%), Positives = 63/115 (54%)

Query:    36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
             +FVG +PY+ +E  +  IFS+ G +V+  LV D+ TGK KG+ F  Y+DQ + + ++ NL
Sbjct:    18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77

Query:    96 NGVKVLSRTIRVDHVNDYKPPKDNKYTDEETKKLRTIGCAPGTEFGSILPVKTED 150
             NG +   R +RVD+    K    NK   EE K L        + +G   P+  ED
Sbjct:    78 NGREFSGRALRVDNAASEK----NK---EELKSLGPAAPIIDSPYGD--PIDPED 123


>UNIPROTKB|G3MZ78 [details] [associations]
            symbol:CSTF2T "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0005622 "intracellular" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 GO:GO:0005622 InterPro:IPR025742 InterPro:IPR026896
            Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641 OMA:METCAME
            EMBL:DAAA02058672 Ensembl:ENSBTAT00000024491 Uniprot:G3MZ78
        Length = 632

 Score = 169 (64.5 bits), Expect = 1.1e-11, P = 1.1e-11
 Identities = 42/115 (36%), Positives = 63/115 (54%)

Query:    36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
             +FVG +PY+ +E  +  IFS+ G +V+  LV D+ TGK KG+ F  Y+DQ + + ++ NL
Sbjct:    18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77

Query:    96 NGVKVLSRTIRVDHVNDYKPPKDNKYTDEETKKLRTIGCAPGTEFGSILPVKTED 150
             NG +   R +RVD+    K    NK   EE K L        + +G   P+  ED
Sbjct:    78 NGREFSGRALRVDNAASEK----NK---EELKSLGPAAPIIDSPYGD--PIDPED 123


>MGI|MGI:1932622 [details] [associations]
            symbol:Cstf2t "cleavage stimulation factor, 3' pre-RNA
            subunit 2, tau" species:10090 "Mus musculus" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IDA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0006378 "mRNA
            polyadenylation" evidence=TAS] [GO:0006397 "mRNA processing"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 MGI:MGI:1932622 GO:GO:0005634
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0003723
            eggNOG:COG0724 HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
            InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
            OrthoDB:EOG4640BW GeneTree:ENSGT00550000074641 CTD:23283
            OMA:METCAME EMBL:AF322194 EMBL:AK173002 EMBL:AK034853 EMBL:AK050407
            EMBL:AK082910 EMBL:AK084696 EMBL:BC026995 IPI:IPI00467932
            RefSeq:NP_112539.2 UniGene:Mm.490369 ProteinModelPortal:Q8C7E9
            SMR:Q8C7E9 STRING:Q8C7E9 PhosphoSite:Q8C7E9
            REPRODUCTION-2DPAGE:IPI00467932 PaxDb:Q8C7E9 PRIDE:Q8C7E9
            Ensembl:ENSMUST00000066039 GeneID:83410 KEGG:mmu:83410
            UCSC:uc008her.1 InParanoid:Q8C7E9 NextBio:350538 Bgee:Q8C7E9
            Genevestigator:Q8C7E9 GermOnline:ENSMUSG00000053536 Uniprot:Q8C7E9
        Length = 632

 Score = 169 (64.5 bits), Expect = 1.1e-11, P = 1.1e-11
 Identities = 42/115 (36%), Positives = 63/115 (54%)

Query:    36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
             +FVG +PY+ +E  +  IFS+ G +V+  LV D+ TGK KG+ F  Y+DQ + + ++ NL
Sbjct:    18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77

Query:    96 NGVKVLSRTIRVDHVNDYKPPKDNKYTDEETKKLRTIGCAPGTEFGSILPVKTED 150
             NG +   R +RVD+    K    NK   EE K L        + +G   P+  ED
Sbjct:    78 NGREFSGRALRVDNAASEK----NK---EELKSLGPAAPIIDSPYGD--PIDPED 123


>FB|FBgn0027841 [details] [associations]
            symbol:CstF-64 "Cleavage stimulation factor 64 kilodalton
            subunit" species:7227 "Drosophila melanogaster" [GO:0006379 "mRNA
            cleavage" evidence=ISS;NAS] [GO:0005848 "mRNA cleavage stimulating
            factor complex" evidence=ISS;NAS] [GO:0003729 "mRNA binding"
            evidence=ISS] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0022008
            "neurogenesis" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0022008
            GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0006379
            InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
            HSSP:P33240 GO:GO:0005848 EMBL:BT004860 ProteinModelPortal:Q86NL1
            SMR:Q86NL1 STRING:Q86NL1 PRIDE:Q86NL1 FlyBase:FBgn0027841
            InParanoid:Q86NL1 OrthoDB:EOG4FBG8R ChiTaRS:CstF-64
            ArrayExpress:Q86NL1 Bgee:Q86NL1 Uniprot:Q86NL1
        Length = 437

 Score = 166 (63.5 bits), Expect = 1.2e-11, P = 1.2e-11
 Identities = 32/74 (43%), Positives = 52/74 (70%)

Query:    36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
             +FVG +PY+ +E  +  IFS+ G +++L LV D+ +GK KGF F  Y+DQ + + ++ NL
Sbjct:    18 VFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGFGFCEYKDQETALSAMRNL 77

Query:    96 NGVKVLSRTIRVDH 109
             NG ++  RT+RVD+
Sbjct:    78 NGYEIGGRTLRVDN 91


>DICTYBASE|DDB_G0286395 [details] [associations]
            symbol:u2af2 "U2 snRNP auxiliary factor large
            subunit" species:44689 "Dictyostelium discoideum" [GO:0006397 "mRNA
            processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0008187 "poly-pyrimidine tract binding"
            evidence=ISS] [GO:0005686 "U2 snRNP" evidence=ISS] [GO:0000398
            "mRNA splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
            InterPro:IPR006529 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 dictyBase:DDB_G0286395 GenomeReviews:CM000153_GR
            GO:GO:0000166 Gene3D:3.30.70.330 EMBL:AAFI02000085 GO:GO:0000398
            GO:GO:0005686 GO:GO:0008187 eggNOG:NOG298004 KO:K12837
            TIGRFAMs:TIGR01642 RefSeq:XP_637725.1 ProteinModelPortal:Q54LV5
            SMR:Q54LV5 EnsemblProtists:DDB0233353 GeneID:8625590
            KEGG:ddi:DDB_G0286395 InParanoid:Q54LV5 OMA:DELMDND Uniprot:Q54LV5
        Length = 671

 Score = 166 (63.5 bits), Expect = 2.5e-11, P = 2.5e-11
 Identities = 36/84 (42%), Positives = 50/84 (59%)

Query:    36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
             I+VGGLP +LSE  V  + S YG++   NLV+D  TG SKGF F  Y+D   T ++   L
Sbjct:   380 IYVGGLPSNLSEEQVKSLLSAYGKLKAFNLVKDTNTGVSKGFAFCEYQDSEVTDVACSKL 439

Query:    96 NGVKVLSRTIRVDHVN-DYKPPKD 118
             NG+ +  +T+ V   +   KPP D
Sbjct:   440 NGIPLADKTLVVQRASIGSKPPGD 463


>UNIPROTKB|Q83CD7 [details] [associations]
            symbol:CBU_1183 "Glycine-rich RNA-binding protein"
            species:227377 "Coxiella burnetii RSA 493" [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
            GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
            RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
            GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
            ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
            Uniprot:Q83CD7
        Length = 117

 Score = 154 (59.3 bits), Expect = 3.5e-11, P = 3.5e-11
 Identities = 31/73 (42%), Positives = 44/73 (60%)

Query:    36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
             I+VG L YD++  ++   F QYGEI    L+ D+ TG+SKGF FI Y  Q +   +V   
Sbjct:    20 IYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAVSKA 79

Query:    96 NGVKVLSRTIRVD 108
             NG+ +  R IRV+
Sbjct:    80 NGIDLQGRKIRVN 92


>TIGR_CMR|CBU_1183 [details] [associations]
            symbol:CBU_1183 "nucleic acid binding domain protein"
            species:227377 "Coxiella burnetii RSA 493" [GO:0008150
            "biological_process" evidence=ND] [GO:0003676 "nucleic acid
            binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
            GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
            RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
            GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
            ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
            Uniprot:Q83CD7
        Length = 117

 Score = 154 (59.3 bits), Expect = 3.5e-11, P = 3.5e-11
 Identities = 31/73 (42%), Positives = 44/73 (60%)

Query:    36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
             I+VG L YD++  ++   F QYGEI    L+ D+ TG+SKGF FI Y  Q +   +V   
Sbjct:    20 IYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAVSKA 79

Query:    96 NGVKVLSRTIRVD 108
             NG+ +  R IRV+
Sbjct:    80 NGIDLQGRKIRVN 92


>UNIPROTKB|K7GQZ8 [details] [associations]
            symbol:LOC100515986 "Uncharacterized protein" species:9823
            "Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            Gene3D:3.30.70.330 GeneTree:ENSGT00550000074641 EMBL:CU861981
            Ensembl:ENSSSCT00000036547 Uniprot:K7GQZ8
        Length = 88

 Score = 151 (58.2 bits), Expect = 7.4e-11, P = 7.4e-11
 Identities = 31/82 (37%), Positives = 50/82 (60%)

Query:    39 GGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGV 98
             G +PY+ +E  +  IFS+ G +V+  LV D+ TGK KG+ F  Y+DQ + + ++ NLNG 
Sbjct:     2 GNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGR 61

Query:    99 KVLSRTIRVDHVNDYKPPKDNK 120
             +   R +RVD+    K  ++ K
Sbjct:    62 EFSGRALRVDNAASEKNKEELK 83


>ZFIN|ZDB-GENE-050417-329 [details] [associations]
            symbol:zgc:112425 "zgc:112425" species:7955 "Danio
            rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0005575
            "cellular_component" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            ZFIN:ZDB-GENE-050417-329 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 eggNOG:COG0724 HOVERGEN:HBG107480 KO:K13195
            HOGENOM:HOG000276232 OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309
            OMA:GNNSGGY EMBL:CABZ01088879 EMBL:CABZ01088880 EMBL:BC093299
            EMBL:BC095030 IPI:IPI00570286 RefSeq:NP_001017797.1
            UniGene:Dr.75965 SMR:Q566W6 STRING:Q566W6
            Ensembl:ENSDART00000093068 Ensembl:ENSDART00000113350 GeneID:550495
            KEGG:dre:550495 NextBio:20879737 Uniprot:Q566W6
        Length = 185

 Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
 Identities = 29/77 (37%), Positives = 49/77 (63%)

Query:    32 DSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLS 91
             D   +F+GGL +D +E  +   FS+YG I N+++ R++ T +S+GF F+ +E+      +
Sbjct:     3 DEGKLFIGGLSFDTTEQSLEDAFSKYGVITNVHVARNRETNRSRGFGFVTFENPDDAKDA 62

Query:    92 VDNLNGVKVLSRTIRVD 108
             ++ +NG  V  RTIRVD
Sbjct:    63 LEGMNGKSVDGRTIRVD 79


>ASPGD|ASPL0000076347 [details] [associations]
            symbol:AN4505 species:162425 "Emericella nidulans"
            [GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
            evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR008111
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR01738 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396 EMBL:BN001303
            EMBL:AACD01000078 HOGENOM:HOG000183826 KO:K12876 eggNOG:NOG246776
            OrthoDB:EOG4M9523 RefSeq:XP_662109.1 ProteinModelPortal:Q5B4M5
            SMR:Q5B4M5 STRING:Q5B4M5 EnsemblFungi:CADANIAT00005939
            GeneID:2872307 KEGG:ani:AN4505.2 OMA:IEGWIII Uniprot:Q5B4M5
        Length = 158

 Score = 149 (57.5 bits), Expect = 1.2e-10, P = 1.2e-10
 Identities = 38/110 (34%), Positives = 55/110 (50%)

Query:    16 QELSSGSKTSWHDQY----KDSAWIFVG-GLPYDLSEGDVICIFSQYGEIVNLNLVRDKI 70
             Q  +SG+    HD          WI +   +  + SE DV  +F++YGEI N +L  D+ 
Sbjct:    19 QTSNSGTDARTHDGAVAVRSIEGWIIIATNIHEEASEEDVTDLFAEYGEIKNFSLNLDRR 78

Query:    71 TGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHVNDYKPPKDNK 120
             TG  KG+  I Y        ++  LNG K+L +TI VD+    +PP  NK
Sbjct:    79 TGYVKGYALIEYSTLPEAAEAIKELNGTKLLDQTIEVDYAF-VRPPPSNK 127


>UNIPROTKB|Q9KVI6 [details] [associations]
            symbol:VC_0159 "RNA-binding protein" species:243277 "Vibrio
            cholerae O1 biovar El Tor str. N16961" [GO:0003723 "RNA binding"
            evidence=ISS] [GO:0016070 "RNA metabolic process" evidence=ISS]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 EMBL:AE003852 GenomeReviews:AE003852_GR
            Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0016070 HSSP:P33240
            OMA:YTGPTMT PIR:D82358 RefSeq:NP_229816.1 ProteinModelPortal:Q9KVI6
            DNASU:2614888 GeneID:2614888 KEGG:vch:VC0159 PATRIC:20079354
            ProtClustDB:CLSK873887 Uniprot:Q9KVI6
        Length = 152

 Score = 146 (56.5 bits), Expect = 2.5e-10, P = 2.5e-10
 Identities = 35/116 (30%), Positives = 63/116 (54%)

Query:    10 IKKLSEQELSSGSKTSWHDQYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDK 69
             I KLS     S S+    +    +  ++VG LPY  +E  V  +F+++GE+  + L++DK
Sbjct:    42 ICKLSTHPTLSSSEDE--EASSTTKTLYVGNLPYKANESHVKELFAEFGEVFAVRLMKDK 99

Query:    70 ITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHVNDYKPPKDNKYTDEE 125
              TGK +GF F+     ++   ++D LN  + + RT++V   ND  P  D +  +++
Sbjct:   100 RTGKRRGFGFVVIAASQAQT-AIDALNEKEYMQRTLKVRIAND--PKSDEEMAEQD 152


>TIGR_CMR|VC_0159 [details] [associations]
            symbol:VC_0159 "RNA-binding protein" species:686 "Vibrio
            cholerae O1 biovar El Tor" [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0016070 "RNA metabolic process" evidence=ISS]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 EMBL:AE003852 GenomeReviews:AE003852_GR
            Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0016070 HSSP:P33240
            OMA:YTGPTMT PIR:D82358 RefSeq:NP_229816.1 ProteinModelPortal:Q9KVI6
            DNASU:2614888 GeneID:2614888 KEGG:vch:VC0159 PATRIC:20079354
            ProtClustDB:CLSK873887 Uniprot:Q9KVI6
        Length = 152

 Score = 146 (56.5 bits), Expect = 2.5e-10, P = 2.5e-10
 Identities = 35/116 (30%), Positives = 63/116 (54%)

Query:    10 IKKLSEQELSSGSKTSWHDQYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDK 69
             I KLS     S S+    +    +  ++VG LPY  +E  V  +F+++GE+  + L++DK
Sbjct:    42 ICKLSTHPTLSSSEDE--EASSTTKTLYVGNLPYKANESHVKELFAEFGEVFAVRLMKDK 99

Query:    70 ITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHVNDYKPPKDNKYTDEE 125
              TGK +GF F+     ++   ++D LN  + + RT++V   ND  P  D +  +++
Sbjct:   100 RTGKRRGFGFVVIAASQAQT-AIDALNEKEYMQRTLKVRIAND--PKSDEEMAEQD 152


>ZFIN|ZDB-GENE-030131-5841 [details] [associations]
            symbol:cirbp "cold inducible RNA binding protein"
            species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0005575 "cellular_component" evidence=ND] [GO:0009409 "response
            to cold" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            ZFIN:ZDB-GENE-030131-5841 GO:GO:0000166 GO:GO:0009409
            Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104309
            EMBL:BX649404 IPI:IPI00758644 PRIDE:F1R6L3
            Ensembl:ENSDART00000105405 ArrayExpress:F1R6L3 Bgee:F1R6L3
            Uniprot:F1R6L3
        Length = 224

 Score = 146 (56.5 bits), Expect = 2.5e-10, P = 2.5e-10
 Identities = 29/77 (37%), Positives = 48/77 (62%)

Query:    32 DSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLS 91
             D   +F+GGL YD +E  +   FS+YG I  ++++RD+ T +S+GF F+ +E+      +
Sbjct:    21 DEGKLFIGGLSYDTTEQSLEEAFSKYGTIAKVDVIRDRETDRSRGFGFVTFENPEDAKDA 80

Query:    92 VDNLNGVKVLSRTIRVD 108
             +  +NG +V  R IRVD
Sbjct:    81 MAAMNGKQVDGRMIRVD 97


>TAIR|locus:2115280 [details] [associations]
            symbol:ATU2AF65A species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;IEA]
            [GO:0006397 "mRNA processing" evidence=IEA] [GO:0042742 "defense
            response to bacterium" evidence=IEP] [GO:0000398 "mRNA splicing,
            via spliceosome" evidence=ISS] InterPro:IPR000504
            InterPro:IPR006529 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR
            GO:GO:0000166 GO:GO:0042742 Gene3D:3.30.70.330 GO:GO:0003723
            EMBL:AL161589 GO:GO:0000398 EMBL:Z99708 HSSP:P26368 EMBL:AF462805
            EMBL:AY080711 EMBL:AY143980 EMBL:BT000965 EMBL:BX827587
            IPI:IPI00524736 IPI:IPI00525889 IPI:IPI00534734 PIR:C85433
            RefSeq:NP_195387.1 RefSeq:NP_849509.1 RefSeq:NP_974695.1
            UniGene:At.21204 ProteinModelPortal:O23212 SMR:O23212 IntAct:O23212
            STRING:O23212 PaxDb:O23212 PRIDE:O23212 EnsemblPlants:AT4G36690.1
            GeneID:829822 KEGG:ath:AT4G36690 TAIR:At4g36690 eggNOG:NOG298004
            HOGENOM:HOG000180745 InParanoid:O23212 KO:K12837 OMA:EDIRMEA
            PhylomeDB:O23212 ProtClustDB:CLSN2915914 Genevestigator:O23212
            TIGRFAMs:TIGR01642 Uniprot:O23212
        Length = 573

 Score = 154 (59.3 bits), Expect = 3.9e-10, P = 3.9e-10
 Identities = 40/123 (32%), Positives = 62/123 (50%)

Query:    36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
             IFVGGLPY  +E  V  +   +G +   +LV+D+ TG SKG+ F  Y+D   T ++   L
Sbjct:   361 IFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAAL 420

Query:    96 NGVKVLSRTIRVDHVND----YKPPKDNKYTDEETK-KLRTIGCAPG---TEFGSILPVK 147
             NG+K+  +T+ V   N      KP ++N     + +   + +   PG   T    +  V 
Sbjct:   421 NGIKMGDKTLTVRRANQGTMLQKPEQENVLLHAQQQIAFQRVMLQPGAVATTVVCLTQVV 480

Query:   148 TED 150
             TED
Sbjct:   481 TED 483


>SGD|S000001323 [details] [associations]
            symbol:SNP1 "Component of U1 snRNP required for mRNA splicing
            via spliceosome" species:4932 "Saccharomyces cerevisiae"
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0000243 "commitment
            complex" evidence=IPI] [GO:0008380 "RNA splicing" evidence=IEA]
            [GO:0071004 "U2-type prespliceosome" evidence=IDA] [GO:0030529
            "ribonucleoprotein complex" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA]
            [GO:0000398 "mRNA splicing, via spliceosome" evidence=IPI]
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0030619 "U1 snRNA binding"
            evidence=IPI] [GO:0003729 "mRNA binding" evidence=IPI] [GO:0005685
            "U1 snRNP" evidence=IDA] [GO:0006397 "mRNA processing"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 SGD:S000001323 GO:GO:0000166
            EMBL:BK006942 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000398
            EMBL:Z38060 GO:GO:0000243 eggNOG:COG0724 GO:GO:0071004
            GO:GO:0005685 KO:K11093 InterPro:IPR022023 Pfam:PF12220
            GeneTree:ENSGT00530000063750 HOGENOM:HOG000000970 OrthoDB:EOG4HMNKR
            GO:GO:0030619 EMBL:X59986 EMBL:AY558085 PIR:S16815
            RefSeq:NP_012203.1 ProteinModelPortal:Q00916 SMR:Q00916
            DIP:DIP-663N IntAct:Q00916 MINT:MINT-397124 STRING:Q00916
            PaxDb:Q00916 PeptideAtlas:Q00916 EnsemblFungi:YIL061C GeneID:854749
            KEGG:sce:YIL061C CYGD:YIL061c OMA:ETSSSAY NextBio:977479
            Genevestigator:Q00916 GermOnline:YIL061C Uniprot:Q00916
        Length = 300

 Score = 148 (57.2 bits), Expect = 4.5e-10, P = 4.5e-10
 Identities = 36/109 (33%), Positives = 60/109 (55%)

Query:     4 LTNVKNIKKLSEQELSSGSKTSWHDQYKDS-AWIFVGGLPYDLSEGDVICIFSQYGEIVN 62
             L+ +KN + L  +  +       H +  D    IF+G LPYDL E ++   F ++GEI  
Sbjct:    76 LSKIKNAQLLDRRLQNWNPNVDPHIKDTDPYRTIFIGRLPYDLDEIELQKYFVKFGEIEK 135

Query:    63 LNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLN---GVKVLSRTIRVD 108
             + +V+DKIT KSKG+ FI ++D  S+ ++   +    G+++  R   VD
Sbjct:   136 IRIVKDKITQKSKGYAFIVFKDPISSKMAFKEIGVHRGIQIKDRICIVD 184


>ZFIN|ZDB-GENE-990415-245 [details] [associations]
            symbol:elavl1 "ELAV (embryonic lethal, abnormal
            vision, Drosophila)-like 1 (Hu antigen R)" species:7955 "Danio
            rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723
            "RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
            SMART:SM00360 ZFIN:ZDB-GENE-990415-245 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
            GeneTree:ENSGT00560000077064 EMBL:BX649372 IPI:IPI00817195
            PRIDE:F1QM02 Ensembl:ENSDART00000146123 ArrayExpress:F1QM02
            Bgee:F1QM02 Uniprot:F1QM02
        Length = 340

 Score = 149 (57.5 bits), Expect = 5.0e-10, P = 5.0e-10
 Identities = 33/113 (29%), Positives = 65/113 (57%)

Query:     9 NIKKLSE-QELSSGSKTSWHDQYKDSAW-IFVGGLPYDLSEGDVICIFSQYGEIVNLNLV 66
             +++ L E  ++S+G +    D+  DS   + V  LP ++S+ ++  +FS  GE+ +  L+
Sbjct:     7 HVRYLKEVYDMSNGYEDHMADELIDSKTNLIVNYLPQNMSQDELRSLFSSIGEVESAKLI 66

Query:    67 RDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHVNDYKPPKDN 119
             RDK+ G S G+ F+ Y +      ++  LNG+++ S+TI+V +    +P  D+
Sbjct:    67 RDKVAGHSLGYGFVNYLNPNDAERAISTLNGLRLQSKTIKVSYA---RPSSDS 116

 Score = 120 (47.3 bits), Expect = 7.5e-07, P = 7.5e-07
 Identities = 32/104 (30%), Positives = 57/104 (54%)

Query:     1 MNPLTNVKNIKKLSEQELSSGS-KTSW----HDQYKDSAWIFVGGLPYDLSEGDVICIFS 55
             +NP    + I  L+   L S + K S+     D  KD A +++ GLP  +++ DV  +F 
Sbjct:    83 LNPNDAERAISTLNGLRLQSKTIKVSYARPSSDSIKD-ANLYISGLPKTMTQKDVEEMFG 141

Query:    56 QYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVK 99
             +YG I+N  ++ D+ +G S+G  FI ++ +     ++ +LNG K
Sbjct:   142 RYGRIINSRVLVDQASGLSRGVAFIRFDKRAEAEDAIKDLNGQK 185

 Score = 114 (45.2 bits), Expect = 2.4e-05, P = 2.4e-05
 Identities = 26/89 (29%), Positives = 46/89 (51%)

Query:    33 SAW-IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLS 91
             S W IF+  L  D  EG +  +F  +G + N+ ++RD  T K KGF F+         ++
Sbjct:   256 SGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTHYEEAAMA 315

Query:    92 VDNLNGVKVLSRTIRVDHVNDYKPPKDNK 120
             + +LNG ++  + ++V     +K  K +K
Sbjct:   316 IASLNGYRLGDKILQVS----FKTSKSHK 340


>UNIPROTKB|G3V5Z6 [details] [associations]
            symbol:RBM23 "Probable RNA-binding protein 23" species:9606
            "Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL132780
            EMBL:AL135998 HGNC:HGNC:20155 ChiTaRS:RBM23
            ProteinModelPortal:G3V5Z6 SMR:G3V5Z6 Ensembl:ENST00000555209
            ArrayExpress:G3V5Z6 Bgee:G3V5Z6 Uniprot:G3V5Z6
        Length = 189

 Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
 Identities = 27/77 (35%), Positives = 49/77 (63%)

Query:    36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
             ++VG L ++++E  +  IF  +G+I N+ L++D  TG+SKG+ FI + D      +++ L
Sbjct:    15 LYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQL 74

Query:    96 NGVKVLSRTIRVDHVND 112
             NG ++  R +RV HV +
Sbjct:    75 NGFELAGRPMRVGHVTE 91


>UNIPROTKB|H0YJJ3 [details] [associations]
            symbol:RBM23 "Probable RNA-binding protein 23" species:9606
            "Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL132780
            EMBL:AL135998 HGNC:HGNC:20155 ChiTaRS:RBM23 Ensembl:ENST00000553884
            Uniprot:H0YJJ3
        Length = 214

 Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
 Identities = 27/77 (35%), Positives = 49/77 (63%)

Query:    36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
             ++VG L ++++E  +  IF  +G+I N+ L++D  TG+SKG+ FI + D      +++ L
Sbjct:    40 LYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQL 99

Query:    96 NGVKVLSRTIRVDHVND 112
             NG ++  R +RV HV +
Sbjct:   100 NGFELAGRPMRVGHVTE 116


>SGD|S000003012 [details] [associations]
            symbol:RNA15 "Component of the cleavage and polyadenylation
            factor I (CF I)" species:4932 "Saccharomyces cerevisiae"
            [GO:0006378 "mRNA polyadenylation" evidence=IDA] [GO:0006379 "mRNA
            cleavage" evidence=IDA] [GO:0005849 "mRNA cleavage factor complex"
            evidence=IPI] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003729 "mRNA
            binding" evidence=IDA] [GO:0046982 "protein heterodimerization
            activity" evidence=IPI] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SGD:S000003012
            EMBL:BK006941 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
            eggNOG:NOG246793 GO:GO:0006378 GO:GO:0006379 GO:GO:0005849
            KO:K14407 InterPro:IPR026896 Pfam:PF14304
            GeneTree:ENSGT00550000074641 OrthoDB:EOG4GQTF6 PDB:2KM8 PDBsum:2KM8
            PDB:2L9B PDBsum:2L9B EMBL:M73462 EMBL:Z72566 PIR:B40257
            RefSeq:NP_011471.1 PDB:2X1A PDB:2X1B PDB:2X1F PDBsum:2X1A
            PDBsum:2X1B PDBsum:2X1F ProteinModelPortal:P25299 SMR:P25299
            DIP:DIP-1489N IntAct:P25299 MINT:MINT-389896 STRING:P25299
            PaxDb:P25299 PeptideAtlas:P25299 EnsemblFungi:YGL044C GeneID:852838
            KEGG:sce:YGL044C CYGD:YGL044c HOGENOM:HOG000247912 OMA:NINMTTP
            EvolutionaryTrace:P25299 NextBio:972414 Genevestigator:P25299
            GermOnline:YGL044C Uniprot:P25299
        Length = 296

 Score = 145 (56.1 bits), Expect = 9.4e-10, P = 9.4e-10
 Identities = 26/71 (36%), Positives = 47/71 (66%)

Query:    36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
             +++G +PYD +E  ++ + S  G ++NL ++ D  TG+SKG+ FI + D  S+  +V NL
Sbjct:    20 VYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNL 79

Query:    96 NGVKVLSRTIR 106
             NG ++ SR ++
Sbjct:    80 NGYQLGSRFLK 90


>POMBASE|SPBC3B9.11c [details] [associations]
            symbol:ctf1 "mRNA cleavage and polyadenylation
            specificity factor complex subunit Ctf1" species:4896
            "Schizosaccharomyces pombe" [GO:0003723 "RNA binding" evidence=ISM]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005829 "cytosol"
            evidence=IDA] [GO:0005847 "mRNA cleavage and polyadenylation
            specificity factor complex" evidence=IDA] [GO:0006378 "mRNA
            polyadenylation" evidence=IC] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 PomBase:SPBC3B9.11c
            GO:GO:0005829 GO:GO:0000166 EMBL:CU329671 Gene3D:3.30.70.330
            GO:GO:0006378 GenomeReviews:CU329671_GR GO:GO:0003723
            eggNOG:COG0724 GO:GO:0005847 InterPro:IPR025742 InterPro:IPR026896
            Pfam:PF14327 Pfam:PF14304 PIR:T40350 RefSeq:NP_596669.1
            ProteinModelPortal:O43040 STRING:O43040 EnsemblFungi:SPBC3B9.11c.1
            GeneID:2541018 KEGG:spo:SPBC3B9.11c OMA:QLAYAIF OrthoDB:EOG4GQTF6
            NextBio:20802132 Uniprot:O43040
        Length = 363

 Score = 147 (56.8 bits), Expect = 9.5e-10, P = 9.5e-10
 Identities = 33/89 (37%), Positives = 51/89 (57%)

Query:    36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
             +FVG +PYD+SE  +  IF+Q G +    LV D  TG  KG+ F  + D  +T ++V  L
Sbjct:     9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRKL 68

Query:    96 NGVKVLSRTIRVDHV-NDYKPPKDNKYTD 123
             N  ++  R IRV+   ND +  +  +YT+
Sbjct:    69 NNSELGPRKIRVEFPSNDPRRNQSYEYTE 97


>TAIR|locus:2159401 [details] [associations]
            symbol:GR-RBP3 "glycine-rich RNA-binding protein 3"
            species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005739
            "mitochondrion" evidence=IDA] [GO:0009409 "response to cold"
            evidence=IEP] [GO:0005524 "ATP binding" evidence=IDA] [GO:0005507
            "copper ion binding" evidence=IDA] [GO:0006626 "protein targeting
            to mitochondrion" evidence=RCA] [GO:0009220 "pyrimidine
            ribonucleotide biosynthetic process" evidence=RCA] [GO:0009909
            "regulation of flower development" evidence=RCA] [GO:0010228
            "vegetative to reproductive phase transition of meristem"
            evidence=RCA] [GO:0034968 "histone lysine methylation"
            evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005739 GO:GO:0005524
            EMBL:CP002688 GenomeReviews:BA000015_GR Gene3D:3.30.70.330
            GO:GO:0003676 GO:GO:0005507 EMBL:AB006696 eggNOG:COG0724
            HSSP:Q14103 KO:K12741 EMBL:AY060565 EMBL:AY125548 EMBL:AB493804
            IPI:IPI00542729 RefSeq:NP_200911.1 UniGene:At.24064
            ProteinModelPortal:Q9FNR1 SMR:Q9FNR1 STRING:Q9FNR1 PaxDb:Q9FNR1
            PRIDE:Q9FNR1 EnsemblPlants:AT5G61030.1 GeneID:836224
            KEGG:ath:AT5G61030 GeneFarm:3953 TAIR:At5g61030
            HOGENOM:HOG000029199 InParanoid:Q9FNR1 OMA:YANDRTS
            ProtClustDB:CLSN2916423 Genevestigator:Q9FNR1 Uniprot:Q9FNR1
        Length = 309

 Score = 145 (56.1 bits), Expect = 1.1e-09, P = 1.1e-09
 Identities = 31/111 (27%), Positives = 60/111 (54%)

Query:     2 NPLTNVKNIKKLSEQELSSGSKTSWHDQYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIV 61
             N L    N K+L+ Q   S        +   S+ +F+GG+ Y + E  +   F++YGE+V
Sbjct:     9 NILKQTTN-KQLNAQVSLSSPSLFQAIRCMSSSKLFIGGMAYSMDEDSLREAFTKYGEVV 67

Query:    62 NLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHVND 112
             +  ++ D+ TG+S+GF F+ +    +   ++  L+G  +  R ++V++ ND
Sbjct:    68 DTRVILDRETGRSRGFGFVTFTSSEAASSAIQALDGRDLHGRVVKVNYAND 118


>UNIPROTKB|B1AM48 [details] [associations]
            symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
            sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
            "RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
            InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 HOVERGEN:HBG002295 HOGENOM:HOG000231162
            TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623 UniGene:Hs.166109
            HGNC:HGNC:3313 OrthoDB:EOG4JHCFV IPI:IPI00184721 SMR:B1AM48
            Ensembl:ENST00000440102 Uniprot:B1AM48
        Length = 189

 Score = 140 (54.3 bits), Expect = 1.1e-09, P = 1.1e-09
 Identities = 26/74 (35%), Positives = 49/74 (66%)

Query:    36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
             + V  LP ++++ ++  +F   GEI +  LVRDKITG+S G+ F+ Y D +    +++ L
Sbjct:    41 LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 100

Query:    96 NGVKVLSRTIRVDH 109
             NG+++ ++TI+V +
Sbjct:   101 NGLRLQTKTIKVSY 114

 Score = 107 (42.7 bits), Expect = 7.0e-05, P = 7.0e-05
 Identities = 20/62 (32%), Positives = 39/62 (62%)

Query:    36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
             ++V GLP  +++ ++  +FSQYG I+   ++ D++TG S+G  FI ++ +     ++  L
Sbjct:   127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 186

Query:    96 NG 97
             NG
Sbjct:   187 NG 188


>WB|WBGene00008688 [details] [associations]
            symbol:F11A10.7 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
            "embryo development ending in birth or egg hatching" evidence=IMP]
            [GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
            development" evidence=IMP] [GO:0006898 "receptor-mediated
            endocytosis" evidence=IMP] [GO:0002009 "morphogenesis of an
            epithelium" evidence=IMP] [GO:0040011 "locomotion" evidence=IMP]
            [GO:0000003 "reproduction" evidence=IMP] [GO:0040035 "hermaphrodite
            genitalia development" evidence=IMP] [GO:0071688 "striated muscle
            myosin thick filament assembly" evidence=IMP] [GO:0007281 "germ
            cell development" evidence=IMP] [GO:0018991 "oviposition"
            evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0002009
            GO:GO:0006898 GO:GO:0040007 GO:GO:0018991 GO:GO:0002119
            GO:GO:0000166 GO:GO:0071688 Gene3D:3.30.70.330 GO:GO:0040011
            GO:GO:0003676 GO:GO:0040035 GO:GO:0007281 HSSP:P19339
            eggNOG:COG0724 EMBL:Z68297 KO:K14837 GeneTree:ENSGT00390000011249
            RefSeq:NP_502291.1 ProteinModelPortal:Q95QL3 SMR:Q95QL3
            STRING:Q95QL3 PaxDb:Q95QL3 EnsemblMetazoa:F11A10.7 GeneID:178148
            KEGG:cel:CELE_F11A10.7 UCSC:F11A10.7 CTD:178148 WormBase:F11A10.7
            HOGENOM:HOG000017901 InParanoid:Q95QL3 OMA:KEFGHIE NextBio:899918
            Uniprot:Q95QL3
        Length = 394

 Score = 146 (56.5 bits), Expect = 1.5e-09, P = 1.5e-09
 Identities = 38/102 (37%), Positives = 58/102 (56%)

Query:    31 KDSAWIFVGGLPYDLSEGDVICIFS-QYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTV 89
             KD A IFVG LP++++E  +I  FS Q G +  + +VRDK TGK KGF F+ ++   S  
Sbjct:   244 KDMA-IFVGNLPFEITEDALITFFSAQIGPVEAVRIVRDKDTGKGKGFAFVNFKQDSSVS 302

Query:    90 LSVDNLNGVKVLSRTIRVDHVNDYKPPKDNKYTDEETKKLRT 131
             L++ ++  +K+  R +R+  V      K    T  +T K RT
Sbjct:   303 LAL-SMETIKMEKRDLRITKVM-----KKGHLTKIQTAKKRT 338


>UNIPROTKB|G3XAP0 [details] [associations]
            symbol:RBM23 "RNA binding motif protein 23, isoform CRA_f"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
            GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
            EMBL:AL132780 EMBL:CH471078 EMBL:AL135998 UniGene:Hs.4997
            HGNC:HGNC:20155 ChiTaRS:RBM23 TIGRFAMs:TIGR01622
            ProteinModelPortal:G3XAP0 SMR:G3XAP0 Ensembl:ENST00000542016
            ArrayExpress:G3XAP0 Bgee:G3XAP0 Uniprot:G3XAP0
        Length = 269

 Score = 142 (55.0 bits), Expect = 1.5e-09, P = 1.5e-09
 Identities = 27/77 (35%), Positives = 49/77 (63%)

Query:    36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
             ++VG L ++++E  +  IF  +G+I N+ L++D  TG+SKG+ FI + D      +++ L
Sbjct:    95 LYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQL 154

Query:    96 NGVKVLSRTIRVDHVND 112
             NG ++  R +RV HV +
Sbjct:   155 NGFELAGRPMRVGHVTE 171


>TAIR|locus:2122009 [details] [associations]
            symbol:RBP31 "AT4G24770" species:3702 "Arabidopsis
            thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA;TAS]
            [GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
            evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
            [GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
            [GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0045087 "innate
            immune response" evidence=IDA] [GO:0008266 "poly(U) RNA binding"
            evidence=IDA] [GO:0009451 "RNA modification" evidence=IMP]
            [GO:0009073 "aromatic amino acid family biosynthetic process"
            evidence=RCA] [GO:0009965 "leaf morphogenesis" evidence=RCA]
            [GO:0016226 "iron-sulfur cluster assembly" evidence=RCA]
            [GO:0030154 "cell differentiation" evidence=RCA] [GO:0045036
            "protein targeting to chloroplast" evidence=RCA] [GO:0045893
            "positive regulation of transcription, DNA-dependent" evidence=RCA]
            [GO:0009631 "cold acclimation" evidence=IMP] [GO:0016553 "base
            conversion or substitution editing" evidence=IMP] [GO:0043489 "RNA
            stabilization" evidence=IMP] [GO:0006396 "RNA processing"
            evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0009570 EMBL:CP002687
            GenomeReviews:CT486007_GR GO:GO:0008266 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 GO:GO:0009631
            GO:GO:0016553 GO:GO:0006396 GO:GO:0030529 EMBL:AL035356
            EMBL:AL161562 GO:GO:0009535 eggNOG:COG0724 HOGENOM:HOG000276232
            EMBL:M94554 EMBL:X65255 EMBL:U08467 EMBL:D31712 EMBL:D31713
            IPI:IPI00523699 IPI:IPI00542634 IPI:IPI00760320 PIR:S28057
            PIR:S53492 RefSeq:NP_194208.1 UniGene:At.38112 UniGene:At.70990
            ProteinModelPortal:Q04836 SMR:Q04836 STRING:Q04836 PaxDb:Q04836
            PRIDE:Q04836 ProMEX:Q04836 EnsemblPlants:AT4G24770.1 GeneID:828579
            KEGG:ath:AT4G24770 GeneFarm:4009 TAIR:At4g24770 InParanoid:Q04836
            OMA:NRYDLNG PhylomeDB:Q04836 ProtClustDB:CLSN2915857
            Genevestigator:Q04836 GermOnline:AT4G24770 GO:GO:0043489
            Uniprot:Q04836
        Length = 329

 Score = 144 (55.7 bits), Expect = 1.6e-09, P = 1.6e-09
 Identities = 29/88 (32%), Positives = 54/88 (61%)

Query:    30 YKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTV 89
             Y+ +  ++VG LP+D+  G +  +FS++G++V   +V D+ TG+S+GF F+   D     
Sbjct:   240 YEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELN 299

Query:    90 LSVDNLNGVKVLSRTIRVDHVNDYKPPK 117
              ++  L+G  +  R IRV+ V + +PP+
Sbjct:   300 EAISALDGQNLEGRAIRVN-VAEERPPR 326


>UNIPROTKB|Q5ZI72 [details] [associations]
            symbol:HNRPDL "Heterogeneous nuclear ribonucleoprotein
            D-like" species:9031 "Gallus gallus" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
            GO:GO:0000166 GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351
            GO:GO:0003723 eggNOG:COG0724 HOGENOM:HOG000234441
            HOVERGEN:HBG002295 EMBL:AJ720912 IPI:IPI00591109
            RefSeq:NP_001026313.1 UniGene:Gga.4605 HSSP:Q14103
            ProteinModelPortal:Q5ZI72 SMR:Q5ZI72 PRIDE:Q5ZI72
            Ensembl:ENSGALT00000018235 GeneID:422601 KEGG:gga:422601 CTD:9987
            GeneTree:ENSGT00700000104347 KO:K13044 NextBio:20825211
            Uniprot:Q5ZI72
        Length = 301

 Score = 143 (55.4 bits), Expect = 1.7e-09, P = 1.7e-09
 Identities = 34/105 (32%), Positives = 58/105 (55%)

Query:    16 QELSSGSKTSWHDQYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSK 75
             +E + GSK +     +D   +F+GGL +D S+ D+    S++GE+V+  +  D +TG+S+
Sbjct:    12 EEFAEGSKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSR 71

Query:    76 GFCFICYEDQRSTVLSVDNLNGVKVLSRTI---RVDHVNDYKPPK 117
             GF F+ ++D  S V  V  L   K+  + I   R   +   +PPK
Sbjct:    72 GFGFVLFKDAAS-VEKVLELKEHKLDGKLIDPKRAKALKGKEPPK 115

 Score = 115 (45.5 bits), Expect = 1.3e-05, P = 1.3e-05
 Identities = 23/50 (46%), Positives = 30/50 (60%)

Query:    36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQ 85
             +FVGGL  D SE  +   F  +GEI N+ L  D  T + +GFCFI Y D+
Sbjct:   117 VFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDE 166


>UNIPROTKB|K7GNR2 [details] [associations]
            symbol:RBMX "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
            Ensembl:ENSSSCT00000034855 Uniprot:K7GNR2
        Length = 129

 Score = 138 (53.6 bits), Expect = 1.8e-09, P = 1.8e-09
 Identities = 29/101 (28%), Positives = 56/101 (55%)

Query:    36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
             +F+GGL  + +E  +  +F +YG IV + L++D+ T KS+GF F+ +E       +  ++
Sbjct:    10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69

Query:    96 NGVKVLSRTIRVDHV------NDYKPPKDNKYTDEETKKLR 130
             NG  +  + I+V+        N Y  P+D+ Y+ +++   R
Sbjct:    70 NGKSLDGKAIKVEQATKPSFENVYLSPRDDGYSTKDSYSSR 110


>UNIPROTKB|Q9PTX2 [details] [associations]
            symbol:cirbp "Cold-inducible RNA-binding protein"
            species:8400 "Rana catesbeiana" [GO:0003729 "mRNA binding"
            evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
            [GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
            evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS] [GO:0009409
            "response to cold" evidence=ISS] [GO:0009790 "embryo development"
            evidence=ISS] [GO:0016477 "cell migration" evidence=ISS]
            [GO:0019899 "enzyme binding" evidence=ISS] [GO:0022008
            "neurogenesis" evidence=ISS] [GO:0042750 "hibernation"
            evidence=IEP] [GO:0045727 "positive regulation of translation"
            evidence=ISS] [GO:0048255 "mRNA stabilization" evidence=ISS]
            [GO:0048793 "pronephros development" evidence=ISS] [GO:0060212
            "negative regulation of nuclear-transcribed mRNA poly(A) tail
            shortening" evidence=ISS] [GO:0005840 "ribosome" evidence=ISS]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
            GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
            Gene3D:3.30.70.330 GO:GO:0019899 GO:GO:0048255 GO:GO:0003730
            GO:GO:0045727 GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480
            GO:GO:0060212 HSSP:P09651 EMBL:AB025351 ProteinModelPortal:Q9PTX2
            SMR:Q9PTX2 GO:GO:0042750 Uniprot:Q9PTX2
        Length = 164

 Score = 138 (53.6 bits), Expect = 1.8e-09, P = 1.8e-09
 Identities = 29/77 (37%), Positives = 47/77 (61%)

Query:    32 DSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLS 91
             D   +FVGGL +D  E  +  +FS+YG+I  + +V+D+ T +S+GF F+ +E+      +
Sbjct:     4 DEGKLFVGGLSFDTDEQCLETVFSKYGQIQEVVVVKDRETKRSRGFGFVTFENCEDAKDA 63

Query:    92 VDNLNGVKVLSRTIRVD 108
             +  +NG  V  R IRVD
Sbjct:    64 MAGMNGKTVDGRQIRVD 80


>ZFIN|ZDB-GENE-040718-77 [details] [associations]
            symbol:rbm34 "RNA binding motif protein 34"
            species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            ZFIN:ZDB-GENE-040718-77 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 KO:K14837 GeneTree:ENSGT00390000011249 CTD:23029
            HOGENOM:HOG000060230 HOVERGEN:HBG052167 OMA:KEFGHIE EMBL:BX569779
            EMBL:BC075875 IPI:IPI00494733 RefSeq:NP_001002382.1
            UniGene:Dr.84194 STRING:Q6DHU2 Ensembl:ENSDART00000039490
            GeneID:436655 KEGG:dre:436655 NextBio:20831100 Uniprot:Q6DHU2
        Length = 411

 Score = 145 (56.1 bits), Expect = 2.0e-09, P = 2.0e-09
 Identities = 36/98 (36%), Positives = 53/98 (54%)

Query:    23 KTSWHDQYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICY 82
             + S H ++     IFVG LPYD+SE  +   F + G I  + LVRD+ +G  KGF ++ +
Sbjct:   241 RVSQHSKHDHKRSIFVGNLPYDISELPLQNHFQECGNIEAVRLVRDRDSGMGKGFGYVLF 300

Query:    83 EDQRSTVLSVDNLNGVKVLSRTIRVDHVNDYKPPKDNK 120
             E   S +L++  LNG  +  R IRV      K  K+ K
Sbjct:   301 ESPDSVMLAL-KLNGSTLQQRKIRVKR--SVKKEKEKK 335


>MGI|MGI:1355299 [details] [associations]
            symbol:Hnrpdl "heterogeneous nuclear ribonucleoprotein
            D-like" species:10090 "Mus musculus" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003677 "DNA binding" evidence=ISA] [GO:0003690
            "double-stranded DNA binding" evidence=ISO] [GO:0003697
            "single-stranded DNA binding" evidence=ISO] [GO:0003723 "RNA
            binding" evidence=ISA] [GO:0005634 "nucleus" evidence=ISO;IDA]
            [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=IEA] [GO:0008143 "poly(A)
            RNA binding" evidence=ISO] [GO:0010468 "regulation of gene
            expression" evidence=ISO] [GO:0016071 "mRNA metabolic process"
            evidence=ISA] [GO:0034046 "poly(G) RNA binding" evidence=ISO]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 MGI:MGI:1355299 GO:GO:0005634 GO:GO:0005737
            GO:GO:0016071 GO:GO:0006355 GO:GO:0000166 GO:GO:0003677
            Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 eggNOG:COG0724
            HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103 ChiTaRS:HNRPDL
            EMBL:AB017020 EMBL:AK011581 EMBL:AK172629 EMBL:BC021374
            IPI:IPI00129417 UniGene:Mm.389579 ProteinModelPortal:Q9Z130
            SMR:Q9Z130 IntAct:Q9Z130 STRING:Q9Z130 PhosphoSite:Q9Z130
            PaxDb:Q9Z130 PRIDE:Q9Z130 InParanoid:Q9Z130 Bgee:Q9Z130
            CleanEx:MM_HNRPDL Genevestigator:Q9Z130 Uniprot:Q9Z130
        Length = 301

 Score = 142 (55.0 bits), Expect = 2.1e-09, P = 2.1e-09
 Identities = 34/106 (32%), Positives = 60/106 (56%)

Query:    16 QELSSGSKTSWHDQYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSK 75
             +E + GSK +     +D   +F+GGL +D S+ D+    S++GE+V+  +  D +TG+S+
Sbjct:    11 EEFAEGSKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSR 70

Query:    76 GFCFICYEDQRST--VLSVDN--LNGVKVLSRTIRVDHVNDYKPPK 117
             GF F+ ++D  S   VL +    L+G K++    R   +   +PPK
Sbjct:    71 GFGFVLFKDAASVDKVLELKEHKLDG-KLIDPK-RAKALKGKEPPK 114

 Score = 115 (45.5 bits), Expect = 1.3e-05, P = 1.3e-05
 Identities = 23/50 (46%), Positives = 30/50 (60%)

Query:    36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQ 85
             +FVGGL  D SE  +   F  +GEI N+ L  D  T + +GFCFI Y D+
Sbjct:   116 VFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDE 165


>UNIPROTKB|F1NCV5 [details] [associations]
            symbol:HNRPDL "Heterogeneous nuclear ribonucleoprotein
            D-like" species:9031 "Gallus gallus" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 GeneTree:ENSGT00700000104347 OMA:QHPPADN
            EMBL:AADN02009038 EMBL:AADN02009039 IPI:IPI00822447
            Ensembl:ENSGALT00000038016 Uniprot:F1NCV5
        Length = 338

 Score = 143 (55.4 bits), Expect = 2.2e-09, P = 2.2e-09
 Identities = 34/105 (32%), Positives = 58/105 (55%)

Query:    16 QELSSGSKTSWHDQYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSK 75
             +E + GSK +     +D   +F+GGL +D S+ D+    S++GE+V+  +  D +TG+S+
Sbjct:    48 EEFAEGSKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSR 107

Query:    76 GFCFICYEDQRSTVLSVDNLNGVKVLSRTI---RVDHVNDYKPPK 117
             GF F+ ++D  S V  V  L   K+  + I   R   +   +PPK
Sbjct:   108 GFGFVLFKDAAS-VEKVLELKEHKLDGKLIDPKRAKALKGKEPPK 151

 Score = 115 (45.5 bits), Expect = 1.6e-05, P = 1.6e-05
 Identities = 23/50 (46%), Positives = 30/50 (60%)

Query:    36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQ 85
             +FVGGL  D SE  +   F  +GEI N+ L  D  T + +GFCFI Y D+
Sbjct:   153 VFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDE 202


>UNIPROTKB|Q3SZN4 [details] [associations]
            symbol:CIRBP "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
            "mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
            of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
            evidence=IEA] [GO:0030371 "translation repressor activity"
            evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
            evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
            [GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
            GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
            GO:GO:0034063 eggNOG:COG0724 GO:GO:0070181 KO:K13195 CTD:1153
            HOGENOM:HOG000276232 OMA:ENRSRGY OrthoDB:EOG4HHP40
            GeneTree:ENSGT00700000104309 EMBL:DAAA02020258 EMBL:BC102773
            IPI:IPI00702406 RefSeq:NP_001029450.1 UniGene:Bt.23273 SMR:Q3SZN4
            Ensembl:ENSBTAT00000004477 GeneID:507120 KEGG:bta:507120
            InParanoid:Q3SZN4 NextBio:20867909 Uniprot:Q3SZN4
        Length = 213

 Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
 Identities = 30/90 (33%), Positives = 50/90 (55%)

Query:    32 DSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLS 91
             D   +FVGGL +D +E  +  +FS+YG+I  + +V+D+ T +S+GF F+ +E+      +
Sbjct:     4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63

Query:    92 VDNLNGVKVLSRTIRVDHVNDYKPPKDNKY 121
             +  +NG  V  R IRVD        +   Y
Sbjct:    64 MMAMNGKSVDGRQIRVDQAGKSSDNRSRGY 93


>UNIPROTKB|E2R6G2 [details] [associations]
            symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            ProteinModelPortal:E2R6G2 Ensembl:ENSCAFT00000031013 Uniprot:E2R6G2
        Length = 172

 Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
 Identities = 30/90 (33%), Positives = 50/90 (55%)

Query:    32 DSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLS 91
             D   +FVGGL +D +E  +  +FS+YG+I  + +V+D+ T +S+GF F+ +E+      +
Sbjct:     4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63

Query:    92 VDNLNGVKVLSRTIRVDHVNDYKPPKDNKY 121
             +  +NG  V  R IRVD        +   Y
Sbjct:    64 MMAMNGKSVDGRQIRVDQAGKSSDNRSRGY 93


>UNIPROTKB|F6XHA7 [details] [associations]
            symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13195 CTD:1153
            OMA:ENRSRGY GeneTree:ENSGT00700000104309 Ensembl:ENSCAFT00000031013
            EMBL:AAEX03012655 RefSeq:XP_868600.1 GeneID:476755 KEGG:cfa:476755
            Uniprot:F6XHA7
        Length = 185

 Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
 Identities = 30/90 (33%), Positives = 50/90 (55%)

Query:    32 DSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLS 91
             D   +FVGGL +D +E  +  +FS+YG+I  + +V+D+ T +S+GF F+ +E+      +
Sbjct:     4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63

Query:    92 VDNLNGVKVLSRTIRVDHVNDYKPPKDNKY 121
             +  +NG  V  R IRVD        +   Y
Sbjct:    64 MMAMNGKSVDGRQIRVDQAGKSSDNRSRGY 93


>UNIPROTKB|K7EJV5 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
            HGNC:HGNC:1982 Ensembl:ENST00000588411 Uniprot:K7EJV5
        Length = 105

 Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
 Identities = 30/90 (33%), Positives = 50/90 (55%)

Query:    32 DSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLS 91
             D   +FVGGL +D +E  +  +FS+YG+I  + +V+D+ T +S+GF F+ +E+      +
Sbjct:     4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63

Query:    92 VDNLNGVKVLSRTIRVDHVNDYKPPKDNKY 121
             +  +NG  V  R IRVD        +   Y
Sbjct:    64 MMAMNGKSVDGRQIRVDQAGKSSDNRSRGY 93


>UNIPROTKB|K7EMY9 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
            HGNC:HGNC:1982 Ensembl:ENST00000586548 Uniprot:K7EMY9
        Length = 159

 Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
 Identities = 30/90 (33%), Positives = 50/90 (55%)

Query:    32 DSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLS 91
             D   +FVGGL +D +E  +  +FS+YG+I  + +V+D+ T +S+GF F+ +E+      +
Sbjct:     4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63

Query:    92 VDNLNGVKVLSRTIRVDHVNDYKPPKDNKY 121
             +  +NG  V  R IRVD        +   Y
Sbjct:    64 MMAMNGKSVDGRQIRVDQAGKSSDNRSRGY 93


>UNIPROTKB|K7EPM4 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
            HGNC:HGNC:1982 Ensembl:ENST00000585913 Ensembl:ENST00000586636
            Ensembl:ENST00000586773 Ensembl:ENST00000589235
            Ensembl:ENST00000589686 Ensembl:ENST00000591935 Uniprot:K7EPM4
        Length = 168

 Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
 Identities = 30/90 (33%), Positives = 50/90 (55%)

Query:    32 DSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLS 91
             D   +FVGGL +D +E  +  +FS+YG+I  + +V+D+ T +S+GF F+ +E+      +
Sbjct:     4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63

Query:    92 VDNLNGVKVLSRTIRVDHVNDYKPPKDNKY 121
             +  +NG  V  R IRVD        +   Y
Sbjct:    64 MMAMNGKSVDGRQIRVDQAGKSSDNRSRGY 93


>UNIPROTKB|K7EQR7 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
            HGNC:HGNC:1982 Ensembl:ENST00000585914 Uniprot:K7EQR7
        Length = 202

 Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
 Identities = 30/90 (33%), Positives = 50/90 (55%)

Query:    32 DSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLS 91
             D   +FVGGL +D +E  +  +FS+YG+I  + +V+D+ T +S+GF F+ +E+      +
Sbjct:     4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63

Query:    92 VDNLNGVKVLSRTIRVDHVNDYKPPKDNKY 121
             +  +NG  V  R IRVD        +   Y
Sbjct:    64 MMAMNGKSVDGRQIRVDQAGKSSDNRSRGY 93


>UNIPROTKB|K7ER40 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
            HGNC:HGNC:1982 Ensembl:ENST00000591659 Uniprot:K7ER40
        Length = 174

 Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
 Identities = 30/90 (33%), Positives = 50/90 (55%)

Query:    32 DSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLS 91
             D   +FVGGL +D +E  +  +FS+YG+I  + +V+D+ T +S+GF F+ +E+      +
Sbjct:     4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63

Query:    92 VDNLNGVKVLSRTIRVDHVNDYKPPKDNKY 121
             +  +NG  V  R IRVD        +   Y
Sbjct:    64 MMAMNGKSVDGRQIRVDQAGKSSDNRSRGY 93


>UNIPROTKB|Q14011 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=ISS;IDA] [GO:0048255 "mRNA stabilization"
            evidence=IDA] [GO:0070181 "SSU rRNA binding" evidence=IDA]
            [GO:0030371 "translation repressor activity" evidence=ISS]
            [GO:0034063 "stress granule assembly" evidence=ISS] [GO:0009411
            "response to UV" evidence=IDA] [GO:0010494 "cytoplasmic stress
            granule" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS;IDA]
            [GO:0005515 "protein binding" evidence=IPI] [GO:0003730 "mRNA
            3'-UTR binding" evidence=IDA] [GO:0045727 "positive regulation of
            translation" evidence=IDA] [GO:0009409 "response to cold"
            evidence=TAS] [GO:0017148 "negative regulation of translation"
            evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
            GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
            Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
            GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
            GO:GO:0070181 KO:K13195 CTD:1153 EMBL:D78134 EMBL:AF021336
            EMBL:AC004258 EMBL:BC000403 EMBL:BC000901 IPI:IPI00641579
            RefSeq:NP_001271.1 UniGene:Hs.618145 UniGene:Hs.634522 PDB:1X5S
            PDBsum:1X5S ProteinModelPortal:Q14011 SMR:Q14011 IntAct:Q14011
            MINT:MINT-5004534 STRING:Q14011 PhosphoSite:Q14011 DMDM:5921786
            REPRODUCTION-2DPAGE:IPI00180954 PaxDb:Q14011 PRIDE:Q14011
            DNASU:1153 Ensembl:ENST00000320936 GeneID:1153 KEGG:hsa:1153
            UCSC:uc002lrr.4 GeneCards:GC19P001269 HGNC:HGNC:1982 MIM:602649
            neXtProt:NX_Q14011 PharmGKB:PA26519 HOGENOM:HOG000276232
            InParanoid:Q14011 OMA:ENRSRGY OrthoDB:EOG4HHP40 PhylomeDB:Q14011
            ChiTaRS:CIRBP EvolutionaryTrace:Q14011 GenomeRNAi:1153 NextBio:4788
            ArrayExpress:Q14011 Bgee:Q14011 CleanEx:HS_CIRBP
            Genevestigator:Q14011 GermOnline:ENSG00000099622 Uniprot:Q14011
        Length = 172

 Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
 Identities = 30/90 (33%), Positives = 50/90 (55%)

Query:    32 DSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLS 91
             D   +FVGGL +D +E  +  +FS+YG+I  + +V+D+ T +S+GF F+ +E+      +
Sbjct:     4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63

Query:    92 VDNLNGVKVLSRTIRVDHVNDYKPPKDNKY 121
             +  +NG  V  R IRVD        +   Y
Sbjct:    64 MMAMNGKSVDGRQIRVDQAGKSSDNRSRGY 93


>UNIPROTKB|F1S6R1 [details] [associations]
            symbol:CIRBP "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
            "mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
            of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
            evidence=IEA] [GO:0030371 "translation repressor activity"
            evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
            evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
            [GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
            GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
            GO:GO:0034063 GO:GO:0070181 OMA:ENRSRGY
            GeneTree:ENSGT00700000104309 EMBL:CU929580
            Ensembl:ENSSSCT00000014671 Uniprot:F1S6R1
        Length = 172

 Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
 Identities = 30/90 (33%), Positives = 50/90 (55%)

Query:    32 DSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLS 91
             D   +FVGGL +D +E  +  +FS+YG+I  + +V+D+ T +S+GF F+ +E+      +
Sbjct:     4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63

Query:    92 VDNLNGVKVLSRTIRVDHVNDYKPPKDNKY 121
             +  +NG  V  R IRVD        +   Y
Sbjct:    64 MMAMNGKSVDGRQIRVDQAGKSSDNRSRGY 93


>UNIPROTKB|Q5RF83 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9601 "Pongo abelii" [GO:0003730 "mRNA 3'-UTR binding"
            evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
            "cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
            evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
            evidence=ISS] [GO:0017148 "negative regulation of translation"
            evidence=ISS] [GO:0030371 "translation repressor activity"
            evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
            [GO:0045727 "positive regulation of translation" evidence=ISS]
            [GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
            rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
            GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
            GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
            GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
            GO:GO:0070181 KO:K13195 CTD:1153 EMBL:CR857278
            RefSeq:NP_001124692.1 UniGene:Pab.19491 ProteinModelPortal:Q5RF83
            SMR:Q5RF83 PRIDE:Q5RF83 GeneID:100171539 KEGG:pon:100171539
            Uniprot:Q5RF83
        Length = 172

 Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
 Identities = 30/90 (33%), Positives = 50/90 (55%)

Query:    32 DSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLS 91
             D   +FVGGL +D +E  +  +FS+YG+I  + +V+D+ T +S+GF F+ +E+      +
Sbjct:     4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63

Query:    92 VDNLNGVKVLSRTIRVDHVNDYKPPKDNKY 121
             +  +NG  V  R IRVD        +   Y
Sbjct:    64 MMAMNGKSVDGRQIRVDQAGKSSDNRSRGY 93


>TAIR|locus:2119495 [details] [associations]
            symbol:GR-RBP2 "AT4G13850" species:3702 "Arabidopsis
            thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005739
            "mitochondrion" evidence=ISM;IDA] [GO:0009409 "response to cold"
            evidence=IGI;IEP;IMP] [GO:0003690 "double-stranded DNA binding"
            evidence=IDA] [GO:0003697 "single-stranded DNA binding"
            evidence=IDA] [GO:0009414 "response to water deprivation"
            evidence=IEP] [GO:0005524 "ATP binding" evidence=IDA] [GO:0001072
            "RNA binding transcription antitermination factor activity"
            evidence=IDA] [GO:0006970 "response to osmotic stress"
            evidence=IMP] [GO:0009631 "cold acclimation" evidence=IMP]
            [GO:0009651 "response to salt stress" evidence=IMP] [GO:0009845
            "seed germination" evidence=IMP] [GO:0031564 "transcription
            antitermination" evidence=IDA] [GO:0005507 "copper ion binding"
            evidence=IDA] [GO:0005794 "Golgi apparatus" evidence=RCA]
            [GO:0006364 "rRNA processing" evidence=RCA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005739 GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR
            GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0005507 GO:GO:0003723
            GO:GO:0006970 GO:GO:0009845 GO:GO:0003690 GO:GO:0003697
            eggNOG:COG0724 EMBL:AL035528 EMBL:AL161537 HOGENOM:HOG000276232
            EMBL:AJ002892 EMBL:AY072361 EMBL:BT002197 EMBL:AY085621 EMBL:X69377
            EMBL:Z18189 IPI:IPI00527583 PIR:S31443 PIR:T05254
            RefSeq:NP_193121.1 UniGene:At.15585 UniGene:At.2
            ProteinModelPortal:Q9SVM8 SMR:Q9SVM8 IntAct:Q9SVM8 STRING:Q9SVM8
            PaxDb:Q9SVM8 PRIDE:Q9SVM8 ProMEX:Q9SVM8 EnsemblPlants:AT4G13850.1
            GeneID:827019 KEGG:ath:AT4G13850 GeneFarm:3949 TAIR:At4g13850
            InParanoid:Q9SVM8 OMA:ISEMDGK PhylomeDB:Q9SVM8 ProtClustDB:PLN03134
            Genevestigator:Q9SVM8 Uniprot:Q9SVM8
        Length = 158

 Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
 Identities = 25/89 (28%), Positives = 52/89 (58%)

Query:    33 SAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSV 92
             S  +F+GGL +   +  +   F+ +G++V+  ++ D+ TG+S+GF F+ + D+ +   ++
Sbjct:    34 STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAI 93

Query:    93 DNLNGVKVLSRTIRVDHVNDYKPPKDNKY 121
               ++G ++  R IRV+  ND +P     Y
Sbjct:    94 SEMDGKELNGRHIRVNPAND-RPSAPRAY 121


>TAIR|locus:2015398 [details] [associations]
            symbol:RBP47C' "RNA-binding protein 47C'" species:3702
            "Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=ISM] [GO:0003723 "RNA binding"
            evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0008143
            "poly(A) RNA binding" evidence=ISS] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0034605
            GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010494
            EMBL:AC007519 GO:GO:0008143 HSSP:Q14103 HOGENOM:HOG000186228
            EMBL:AK227406 EMBL:BT030029 IPI:IPI00530631 PIR:C96515
            RefSeq:NP_175181.1 UniGene:At.22563 UniGene:At.64064
            ProteinModelPortal:Q9SX80 SMR:Q9SX80 PRIDE:Q9SX80
            EnsemblPlants:AT1G47500.1 GeneID:841159 KEGG:ath:AT1G47500
            TAIR:At1g47500 InParanoid:Q9SX80 OMA:FANDIRP PhylomeDB:Q9SX80
            ProtClustDB:CLSN2681931 Genevestigator:Q9SX80 Uniprot:Q9SX80
        Length = 434

 Score = 123 (48.4 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
 Identities = 37/123 (30%), Positives = 60/123 (48%)

Query:     3 PLTNVKNIKKLSEQELSSGSKTSWHDQYKDSAWIFVGGLPYDLSEGDVICIFSQ-YGEIV 61
             P+ N     +L+    S+G K    +   D + IFVG L  D+S+  +   FS+ Y  + 
Sbjct:   170 PMPNTDQPFRLNWASFSTGEKRL-ENNGPDLS-IFVGDLAPDVSDALLHETFSEKYPSVK 227

Query:    62 NLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHVNDYKPPKDNKY 121
                +V D  TG+SKG+ F+ + D+     ++  +NGVK  SR +R+       P K N Y
Sbjct:   228 AAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPAT---PRKTNGY 284

Query:   122 TDE 124
               +
Sbjct:   285 QQQ 287

 Score = 43 (20.2 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
 Identities = 12/30 (40%), Positives = 17/30 (56%)

Query:   118 DNKYTDEETKKLRTIGCAPGTEFGSILPVK 147
             D+  TDE+ K+       P +EFG I+ VK
Sbjct:   314 DSSVTDEDLKQ-------PFSEFGEIVSVK 336


>TAIR|locus:2206001 [details] [associations]
            symbol:AT1G60900 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;IEA]
            [GO:0006397 "mRNA processing" evidence=IEA] InterPro:IPR000504
            InterPro:IPR006529 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634
            GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
            GO:GO:0003723 EMBL:AC018908 HSSP:P26368 eggNOG:NOG298004
            HOGENOM:HOG000180745 KO:K12837 TIGRFAMs:TIGR01642 EMBL:AY140014
            IPI:IPI00528167 PIR:E96634 RefSeq:NP_176287.3 UniGene:At.17780
            UniGene:At.52293 ProteinModelPortal:Q8L716 SMR:Q8L716 PaxDb:Q8L716
            PRIDE:Q8L716 EnsemblPlants:AT1G60900.1 GeneID:842382
            KEGG:ath:AT1G60900 GeneFarm:4545 TAIR:At1g60900 InParanoid:Q8L716
            OMA:TQMGGLP PhylomeDB:Q8L716 ProtClustDB:CLSN2918395
            Genevestigator:Q8L716 Uniprot:Q8L716
        Length = 589

 Score = 147 (56.8 bits), Expect = 2.3e-09, P = 2.3e-09
 Identities = 29/72 (40%), Positives = 44/72 (61%)

Query:    36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
             IFVGGLPY  +E  +  +   +G +   NLV+D+ TG SKG+ F  Y+D   T ++   L
Sbjct:   377 IFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQDPSVTDIACAAL 436

Query:    96 NGVKVLSRTIRV 107
             NG+K+  +T+ V
Sbjct:   437 NGIKMGDKTLTV 448


>ZFIN|ZDB-GENE-040426-2717 [details] [associations]
            symbol:hnrpdl "heterogeneous nuclear
            ribonucleoprotein D-like" species:7955 "Danio rerio" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-040426-2717
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
            eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103
            CTD:9987 GeneTree:ENSGT00700000104347 KO:K13044 OMA:QHPPADN
            OrthoDB:EOG49W2FZ EMBL:CR847788 EMBL:BC055525 IPI:IPI00500216
            RefSeq:NP_998557.1 UniGene:Dr.75234 SMR:Q7SXN2 STRING:Q7SXN2
            Ensembl:ENSDART00000020631 GeneID:406701 KEGG:dre:406701
            InParanoid:Q7SXN2 NextBio:20818224 Uniprot:Q7SXN2
        Length = 296

 Score = 141 (54.7 bits), Expect = 2.6e-09, P = 2.6e-09
 Identities = 34/108 (31%), Positives = 59/108 (54%)

Query:    14 SEQELSSGSKTSWHDQYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGK 73
             S  E   GSK +     +D   +F+GGL +D S+ D+    S++GE+++  +  D +TG+
Sbjct:    10 STDEFPEGSKINASKNQEDDGKMFIGGLSWDTSKKDLTDYLSRFGEVLDCTIKTDPLTGR 69

Query:    74 SKGFCFICYEDQRST--VLSVDN--LNGVKVLSRTIRVDHVNDYKPPK 117
             S+GF F+ ++D  S   VL +    L+G K++    R   +   +PPK
Sbjct:    70 SRGFGFVLFKDAESVDRVLELTEHKLDG-KLIDPK-RAKAIKGKEPPK 115


>UNIPROTKB|B1APY9 [details] [associations]
            symbol:ELAVL4 "cDNA FLJ50619, highly similar to ELAV-like
            protein 4" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
            EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
            TIGRFAMs:TIGR01661 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
            UniGene:Hs.213050 HGNC:HGNC:3315 EMBL:AK298902 IPI:IPI00643012
            SMR:B1APY9 STRING:B1APY9 Ensembl:ENST00000371819 UCSC:uc009vyu.3
            Uniprot:B1APY9
        Length = 371

 Score = 143 (55.4 bits), Expect = 2.8e-09, P = 2.8e-09
 Identities = 33/108 (30%), Positives = 61/108 (56%)

Query:     3 PLTNVKNIKKLSEQELSSGSKT-SWHDQYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIV 61
             P +N  N    + +   S  +T +  D  K +  + V  LP ++++ +   +F   GEI 
Sbjct:    21 PTSNTSNGPSSNNRNCPSPMQTGATTDDSKTN--LIVNYLPQNMTQEEFRSLFGSIGEIE 78

Query:    62 NLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDH 109
             +  LVRDKITG+S G+ F+ Y D +    +++ LNG+++ ++TI+V +
Sbjct:    79 SCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSY 126

 Score = 112 (44.5 bits), Expect = 6.6e-05, P = 6.6e-05
 Identities = 25/79 (31%), Positives = 45/79 (56%)

Query:    36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
             ++V GLP  +++ ++  +FSQYG I+   ++ D++TG S+G  FI ++ +     ++  L
Sbjct:   139 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 198

Query:    96 NGVKVLSRT--IRVDHVND 112
             NG K    T  I V   N+
Sbjct:   199 NGQKPSGATEPITVKFANN 217


>UNIPROTKB|K7ENX8 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
            HGNC:HGNC:1982 Ensembl:ENST00000589266 Uniprot:K7ENX8
        Length = 89

 Score = 136 (52.9 bits), Expect = 2.9e-09, P = 2.9e-09
 Identities = 29/77 (37%), Positives = 48/77 (62%)

Query:    32 DSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLS 91
             D   +FVGGL +D +E  +  +FS+YG+I  + +V+D+ T +S+GF F+ +E+      +
Sbjct:     4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63

Query:    92 VDNLNGVKVLSRTIRVD 108
             +  +NG  V  R IRVD
Sbjct:    64 MMAMNGKSVDGRQIRVD 80


>UNIPROTKB|P26378 [details] [associations]
            symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
            sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017091
            "AU-rich element binding" evidence=IDA] [GO:0006397 "mRNA
            processing" evidence=TAS] [GO:0003723 "RNA binding" evidence=TAS]
            [GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0006396 "RNA
            processing" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
            InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 EMBL:CH471059
            GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0003730
            eggNOG:COG0724 EMBL:AL645730 HOVERGEN:HBG002295
            HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 EMBL:M62843
            EMBL:AY033995 EMBL:AY033996 EMBL:AY033997 EMBL:AY033998
            EMBL:AK297338 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
            EMBL:BC036071 IPI:IPI00395507 IPI:IPI00479625 IPI:IPI00607677
            IPI:IPI00644588 IPI:IPI00978372 PIR:A40348 RefSeq:NP_001138246.1
            RefSeq:NP_001138247.1 RefSeq:NP_001138248.1 RefSeq:NP_001138249.1
            RefSeq:NP_068771.2 UniGene:Hs.213050 PDB:1FXL PDB:1G2E PDBsum:1FXL
            PDBsum:1G2E ProteinModelPortal:P26378 SMR:P26378 IntAct:P26378
            MINT:MINT-1471928 STRING:P26378 PhosphoSite:P26378 DMDM:223590202
            PaxDb:P26378 PRIDE:P26378 Ensembl:ENST00000357083
            Ensembl:ENST00000371823 Ensembl:ENST00000371824
            Ensembl:ENST00000371827 Ensembl:ENST00000448907 GeneID:1996
            KEGG:hsa:1996 UCSC:uc001crz.3 UCSC:uc001csa.3 UCSC:uc001csb.2
            UCSC:uc001csc.3 CTD:1996 GeneCards:GC01P050513 HGNC:HGNC:3315
            HPA:CAB004442 MIM:168360 neXtProt:NX_P26378 PharmGKB:PA27743
            EvolutionaryTrace:P26378 GenomeRNAi:1996 NextBio:8073
            ArrayExpress:P26378 Bgee:P26378 CleanEx:HS_ELAVL4
            Genevestigator:P26378 GermOnline:ENSG00000162374 Uniprot:P26378
        Length = 380

 Score = 143 (55.4 bits), Expect = 2.9e-09, P = 2.9e-09
 Identities = 33/108 (30%), Positives = 61/108 (56%)

Query:     3 PLTNVKNIKKLSEQELSSGSKT-SWHDQYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIV 61
             P +N  N    + +   S  +T +  D  K +  + V  LP ++++ +   +F   GEI 
Sbjct:    16 PTSNTSNGPSSNNRNCPSPMQTGATTDDSKTN--LIVNYLPQNMTQEEFRSLFGSIGEIE 73

Query:    62 NLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDH 109
             +  LVRDKITG+S G+ F+ Y D +    +++ LNG+++ ++TI+V +
Sbjct:    74 SCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSY 121

 Score = 112 (44.5 bits), Expect = 6.8e-05, P = 6.8e-05
 Identities = 25/79 (31%), Positives = 45/79 (56%)

Query:    36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
             ++V GLP  +++ ++  +FSQYG I+   ++ D++TG S+G  FI ++ +     ++  L
Sbjct:   134 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 193

Query:    96 NGVKVLSRT--IRVDHVND 112
             NG K    T  I V   N+
Sbjct:   194 NGQKPSGATEPITVKFANN 212


>UNIPROTKB|B1APY8 [details] [associations]
            symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
            sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
            "RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
            InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
            TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AL583843 EMBL:AL592182
            EMBL:AL731870 UniGene:Hs.213050 HGNC:HGNC:3315 OMA:SNSRNCP
            IPI:IPI00513758 SMR:B1APY8 STRING:B1APY8 Ensembl:ENST00000371821
            Uniprot:B1APY8
        Length = 385

 Score = 143 (55.4 bits), Expect = 3.0e-09, P = 3.0e-09
 Identities = 33/108 (30%), Positives = 61/108 (56%)

Query:     3 PLTNVKNIKKLSEQELSSGSKT-SWHDQYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIV 61
             P +N  N    + +   S  +T +  D  K +  + V  LP ++++ +   +F   GEI 
Sbjct:    21 PTSNTSNGPSSNNRNCPSPMQTGATTDDSKTN--LIVNYLPQNMTQEEFRSLFGSIGEIE 78

Query:    62 NLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDH 109
             +  LVRDKITG+S G+ F+ Y D +    +++ LNG+++ ++TI+V +
Sbjct:    79 SCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSY 126

 Score = 112 (44.5 bits), Expect = 7.0e-05, P = 7.0e-05
 Identities = 25/79 (31%), Positives = 45/79 (56%)

Query:    36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
             ++V GLP  +++ ++  +FSQYG I+   ++ D++TG S+G  FI ++ +     ++  L
Sbjct:   139 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 198

Query:    96 NGVKVLSRT--IRVDHVND 112
             NG K    T  I V   N+
Sbjct:   199 NGQKPSGATEPITVKFANN 217


>UNIPROTKB|D4AAT0 [details] [associations]
            symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
            norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
            Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
            RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
            TIGRFAMs:TIGR01661 IPI:IPI00392493 ProteinModelPortal:D4AAT0
            Ensembl:ENSRNOT00000035262 ArrayExpress:D4AAT0 Uniprot:D4AAT0
        Length = 351

 Score = 142 (55.0 bits), Expect = 3.1e-09, P = 3.1e-09
 Identities = 33/108 (30%), Positives = 61/108 (56%)

Query:     3 PLTNVKNIKKLSEQELSSGSKT-SWHDQYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIV 61
             P +N  N    + +   S  +T +  D  K +  + V  LP ++++ +   +F   GEI 
Sbjct:    14 PTSNTSNGPSSNNRNCPSPMQTGAATDDSKTN--LIVNYLPQNMTQEEFRSLFGSIGEIE 71

Query:    62 NLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDH 109
             +  LVRDKITG+S G+ F+ Y D +    +++ LNG+++ ++TI+V +
Sbjct:    72 SCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSY 119

 Score = 112 (44.5 bits), Expect = 6.0e-05, P = 6.0e-05
 Identities = 25/79 (31%), Positives = 45/79 (56%)

Query:    36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
             ++V GLP  +++ ++  +FSQYG I+   ++ D++TG S+G  FI ++ +     ++  L
Sbjct:   132 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 191

Query:    96 NGVKVLSRT--IRVDHVND 112
             NG K    T  I V   N+
Sbjct:   192 NGQKPSGATEPITVKFANN 210

 Score = 104 (41.7 bits), Expect = 0.00093, P = 0.00093
 Identities = 23/76 (30%), Positives = 41/76 (53%)

Query:    33 SAW-IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLS 91
             + W IFV  L  D  E  +  +F  +G + N+ ++RD  T K KGF F+   +     ++
Sbjct:   266 TGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMA 325

Query:    92 VDNLNGVKVLSRTIRV 107
             + +LNG ++  R ++V
Sbjct:   326 IASLNGYRLGDRVLQV 341


>TAIR|locus:2157702 [details] [associations]
            symbol:CP31B "chloroplast RNA-binding protein 31B"
            species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009507
            "chloroplast" evidence=ISM;IDA] [GO:0009941 "chloroplast envelope"
            evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
            [GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009570
            "chloroplast stroma" evidence=IDA] [GO:0009451 "RNA modification"
            evidence=IMP] [GO:0000023 "maltose metabolic process" evidence=RCA]
            [GO:0006098 "pentose-phosphate shunt" evidence=RCA] [GO:0009409
            "response to cold" evidence=RCA] [GO:0009697 "salicylic acid
            biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
            incompatible interaction" evidence=RCA] [GO:0010027 "thylakoid
            membrane organization" evidence=RCA] [GO:0019252 "starch
            biosynthetic process" evidence=RCA] [GO:0019288 "isopentenyl
            diphosphate biosynthetic process, mevalonate-independent pathway"
            evidence=RCA] [GO:0019684 "photosynthesis, light reaction"
            evidence=RCA] [GO:0042742 "defense response to bacterium"
            evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
            GenomeReviews:BA000015_GR GO:GO:0009570 GO:GO:0008266 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AB024031
            eggNOG:COG0724 GO:GO:0009451 HOGENOM:HOG000276232 HSSP:P11940
            ProtClustDB:CLSN2915857 UniGene:At.46085 UniGene:At.7917
            EMBL:AY039868 EMBL:AY077660 IPI:IPI00537317 RefSeq:NP_199836.1
            ProteinModelPortal:Q9FGS0 SMR:Q9FGS0 STRING:Q9FGS0 PaxDb:Q9FGS0
            PRIDE:Q9FGS0 EnsemblPlants:AT5G50250.1 GeneID:835090
            KEGG:ath:AT5G50250 TAIR:At5g50250 InParanoid:Q9FGS0 OMA:AAFRIYV
            PhylomeDB:Q9FGS0 Genevestigator:Q9FGS0 Uniprot:Q9FGS0
        Length = 289

 Score = 140 (54.3 bits), Expect = 3.2e-09, P = 3.2e-09
 Identities = 28/89 (31%), Positives = 56/89 (62%)

Query:    21 GSKTSWHDQYKDSAW-IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCF 79
             GS+     +  D+A+ I+VG LP+D+  G +  +FS++G++V+  +V D+ TG+S+GF F
Sbjct:   193 GSRPERQPRVYDAAFRIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGF 252

Query:    80 ICYEDQRSTVLSVDNLNGVKVLSRTIRVD 108
             +   ++    +++  L+G  +  R I+V+
Sbjct:   253 VQMSNENEVNVAIAALDGQNLEGRAIKVN 281


>ZFIN|ZDB-GENE-980526-76 [details] [associations]
            symbol:elavl3 "ELAV (embryonic lethal, abnormal
            vision, Drosophila)-like 3 (Hu antigen C)" species:7955 "Danio
            rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
            "RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
            SMART:SM00360 ZFIN:ZDB-GENE-980526-76 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003723 HSSP:P19339 HOVERGEN:HBG002295
            HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
            GeneTree:ENSGT00560000077064 OMA:ARRYTGP OrthoDB:EOG43R3N0
            EMBL:CR385086 EMBL:BC065343 IPI:IPI00512421 UniGene:Dr.75060
            SMR:Q6P105 STRING:Q6P105 Ensembl:ENSDART00000028610
            InParanoid:Q6P105 Uniprot:Q6P105
        Length = 359

 Score = 142 (55.0 bits), Expect = 3.3e-09, P = 3.3e-09
 Identities = 33/97 (34%), Positives = 55/97 (56%)

Query:    14 SEQELSSGSKTSWHDQYKDSAW-IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITG 72
             S   L +G   S +    DS   + V  LP ++++ +   +F   GEI +  LVRDKITG
Sbjct:    17 SGTSLPNGPVISTNGATDDSKTNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITG 76

Query:    73 KSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDH 109
             +S G+ F+ Y D      +++ LNG+K+ ++TI+V +
Sbjct:    77 QSLGYGFVNYVDPNDADKAINTLNGLKLQTKTIKVSY 113

 Score = 115 (45.5 bits), Expect = 1.8e-05, P = 1.8e-05
 Identities = 35/115 (30%), Positives = 58/115 (50%)

Query:     1 MNPLTNVKNIKKLSEQELSSGSKTSWHDQYKDSAWIFVGGLPYDLSEGDVICIFSQYGEI 60
             +N L  +K   K  +   +  S  S  D     A ++V GLP  +S+ D+  +FSQYG I
Sbjct:    96 INTLNGLKLQTKTIKVSYARPSSASIRD-----ANLYVSGLPKTMSQKDMEQLFSQYGRI 150

Query:    61 VNLNLVRDKIT-GKSKGFCFICYEDQRSTVLSVDNLNGVKVL--SRTIRVDHVND 112
             +   ++ D++T G S+G  FI ++ +     ++  LNG K L  +  I V   N+
Sbjct:   151 ITSRILVDQVTAGISRGVGFIRFDKRNEAEEAIKGLNGQKPLGAAEPITVKFANN 205

 Score = 108 (43.1 bits), Expect = 0.00025, P = 0.00025
 Identities = 25/89 (28%), Positives = 46/89 (51%)

Query:    33 SAW-IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLS 91
             + W IFV  L  +  E  +  +F  +G + N+ ++RD  T K KGF F+   +     ++
Sbjct:   274 AGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMA 333

Query:    92 VDNLNGVKVLSRTIRVDHVNDYKPPKDNK 120
             + +LNG ++  R ++V     +K  K +K
Sbjct:   334 IASLNGYRLGDRVLQVS----FKTSKQHK 358


>UNIPROTKB|A2VDK5 [details] [associations]
            symbol:ELAVL4 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
            Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
            HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
            GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
            OMA:SNSRNCP EMBL:DAAA02008922 EMBL:DAAA02008923 EMBL:BC133283
            IPI:IPI00729244 RefSeq:NP_001075075.1 UniGene:Bt.26853 SMR:A2VDK5
            STRING:A2VDK5 Ensembl:ENSBTAT00000028031 GeneID:535408
            KEGG:bta:535408 InParanoid:A2VDK5 NextBio:20876736 Uniprot:A2VDK5
        Length = 366

 Score = 142 (55.0 bits), Expect = 3.4e-09, P = 3.4e-09
 Identities = 33/108 (30%), Positives = 61/108 (56%)

Query:     3 PLTNVKNIKKLSEQELSSGSKT-SWHDQYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIV 61
             P +N  N    + +   S  +T +  D  K +  + V  LP ++++ +   +F   GEI 
Sbjct:    16 PTSNTSNGPSSNNRNCPSPMQTGAATDDSKTN--LIVNYLPQNMTQEEFRSLFGSIGEIE 73

Query:    62 NLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDH 109
             +  LVRDKITG+S G+ F+ Y D +    +++ LNG+++ ++TI+V +
Sbjct:    74 SCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSY 121

 Score = 112 (44.5 bits), Expect = 6.4e-05, P = 6.4e-05
 Identities = 25/79 (31%), Positives = 45/79 (56%)

Query:    36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
             ++V GLP  +++ ++  +FSQYG I+   ++ D++TG S+G  FI ++ +     ++  L
Sbjct:   134 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 193

Query:    96 NGVKVLSRT--IRVDHVND 112
             NG K    T  I V   N+
Sbjct:   194 NGQKPSGATEPITVKFANN 212

 Score = 104 (41.7 bits), Expect = 0.0010, P = 0.0010
 Identities = 23/76 (30%), Positives = 41/76 (53%)

Query:    33 SAW-IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLS 91
             + W IFV  L  D  E  +  +F  +G + N+ ++RD  T K KGF F+   +     ++
Sbjct:   281 TGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMA 340

Query:    92 VDNLNGVKVLSRTIRV 107
             + +LNG ++  R ++V
Sbjct:   341 IASLNGYRLGDRVLQV 356


>UNIPROTKB|J9PAL3 [details] [associations]
            symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
            Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
            GeneTree:ENSGT00560000077064 KO:K13208 CTD:1996 EMBL:AAEX03009733
            RefSeq:XP_859918.1 ProteinModelPortal:J9PAL3
            Ensembl:ENSCAFT00000045412 GeneID:475361 KEGG:cfa:475361
            Uniprot:J9PAL3
        Length = 366

 Score = 142 (55.0 bits), Expect = 3.4e-09, P = 3.4e-09
 Identities = 33/108 (30%), Positives = 61/108 (56%)

Query:     3 PLTNVKNIKKLSEQELSSGSKT-SWHDQYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIV 61
             P +N  N    + +   S  +T +  D  K +  + V  LP ++++ +   +F   GEI 
Sbjct:    16 PTSNTSNGPSSNNRNCPSPMQTGAATDDSKTN--LIVNYLPQNMTQEEFRSLFGSIGEIE 73

Query:    62 NLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDH 109
             +  LVRDKITG+S G+ F+ Y D +    +++ LNG+++ ++TI+V +
Sbjct:    74 SCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSY 121

 Score = 112 (44.5 bits), Expect = 6.4e-05, P = 6.4e-05
 Identities = 25/79 (31%), Positives = 45/79 (56%)

Query:    36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
             ++V GLP  +++ ++  +FSQYG I+   ++ D++TG S+G  FI ++ +     ++  L
Sbjct:   134 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 193

Query:    96 NGVKVLSRT--IRVDHVND 112
             NG K    T  I V   N+
Sbjct:   194 NGQKPSGATEPITVKFANN 212

 Score = 104 (41.7 bits), Expect = 0.0010, P = 0.0010
 Identities = 23/76 (30%), Positives = 41/76 (53%)

Query:    33 SAW-IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLS 91
             + W IFV  L  D  E  +  +F  +G + N+ ++RD  T K KGF F+   +     ++
Sbjct:   281 TGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMA 340

Query:    92 VDNLNGVKVLSRTIRV 107
             + +LNG ++  R ++V
Sbjct:   341 IASLNGYRLGDRVLQV 356


>RGD|1560027 [details] [associations]
            symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
            Drosophila)-like 4" species:10116 "Rattus norvegicus" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0017091 "AU-rich element
            binding" evidence=IEA;ISO;ISS] InterPro:IPR000504
            InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
            Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
            RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
            eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
            TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996 OMA:SNSRNCP
            EMBL:S83320 IPI:IPI00560167 RefSeq:NP_001071119.1 UniGene:Rn.134702
            ProteinModelPortal:O09032 SMR:O09032 STRING:O09032
            PhosphoSite:O09032 GeneID:432358 KEGG:rno:432358 UCSC:RGD:1560027
            InParanoid:O09032 NextBio:696819 ArrayExpress:O09032
            Genevestigator:O09032 GermOnline:ENSRNOG00000023601 Uniprot:O09032
        Length = 373

 Score = 142 (55.0 bits), Expect = 3.6e-09, P = 3.6e-09
 Identities = 33/108 (30%), Positives = 61/108 (56%)

Query:     3 PLTNVKNIKKLSEQELSSGSKT-SWHDQYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIV 61
             P +N  N    + +   S  +T +  D  K +  + V  LP ++++ +   +F   GEI 
Sbjct:     9 PTSNTSNGPSSNNRNCPSPMQTGAATDDSKTN--LIVNYLPQNMTQEEFRSLFGSIGEIE 66

Query:    62 NLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDH 109
             +  LVRDKITG+S G+ F+ Y D +    +++ LNG+++ ++TI+V +
Sbjct:    67 SCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSY 114

 Score = 112 (44.5 bits), Expect = 6.6e-05, P = 6.6e-05
 Identities = 25/79 (31%), Positives = 45/79 (56%)

Query:    36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
             ++V GLP  +++ ++  +FSQYG I+   ++ D++TG S+G  FI ++ +     ++  L
Sbjct:   127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 186

Query:    96 NGVKVLSRT--IRVDHVND 112
             NG K    T  I V   N+
Sbjct:   187 NGQKPSGATEPITVKFANN 205


>UNIPROTKB|O09032 [details] [associations]
            symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
            norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
            SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
            HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV
            CTD:1996 OMA:SNSRNCP EMBL:S83320 IPI:IPI00560167
            RefSeq:NP_001071119.1 UniGene:Rn.134702 ProteinModelPortal:O09032
            SMR:O09032 STRING:O09032 PhosphoSite:O09032 GeneID:432358
            KEGG:rno:432358 UCSC:RGD:1560027 InParanoid:O09032 NextBio:696819
            ArrayExpress:O09032 Genevestigator:O09032
            GermOnline:ENSRNOG00000023601 Uniprot:O09032
        Length = 373

 Score = 142 (55.0 bits), Expect = 3.6e-09, P = 3.6e-09
 Identities = 33/108 (30%), Positives = 61/108 (56%)

Query:     3 PLTNVKNIKKLSEQELSSGSKT-SWHDQYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIV 61
             P +N  N    + +   S  +T +  D  K +  + V  LP ++++ +   +F   GEI 
Sbjct:     9 PTSNTSNGPSSNNRNCPSPMQTGAATDDSKTN--LIVNYLPQNMTQEEFRSLFGSIGEIE 66

Query:    62 NLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDH 109
             +  LVRDKITG+S G+ F+ Y D +    +++ LNG+++ ++TI+V +
Sbjct:    67 SCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSY 114

 Score = 112 (44.5 bits), Expect = 6.6e-05, P = 6.6e-05
 Identities = 25/79 (31%), Positives = 45/79 (56%)

Query:    36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
             ++V GLP  +++ ++  +FSQYG I+   ++ D++TG S+G  FI ++ +     ++  L
Sbjct:   127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 186

Query:    96 NGVKVLSRT--IRVDHVND 112
             NG K    T  I V   N+
Sbjct:   187 NGQKPSGATEPITVKFANN 205


>UNIPROTKB|P60826 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:10029 "Cricetulus griseus" [GO:0003730 "mRNA 3'-UTR
            binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
            [GO:0005737 "cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
            evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
            evidence=ISS] [GO:0017148 "negative regulation of translation"
            evidence=ISS] [GO:0030371 "translation repressor activity"
            evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
            [GO:0045727 "positive regulation of translation" evidence=ISS]
            [GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
            rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
            GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
            GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
            GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
            GO:GO:0070181 EMBL:AY359860 RefSeq:NP_001231002.1
            ProteinModelPortal:P60826 SMR:P60826 PRIDE:P60826 GeneID:100689075
            CTD:1153 Uniprot:P60826
        Length = 172

 Score = 135 (52.6 bits), Expect = 3.6e-09, P = 3.6e-09
 Identities = 30/90 (33%), Positives = 50/90 (55%)

Query:    32 DSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLS 91
             D   +FVGGL +D +E  +  +FS+YG+I  + +V+D+ T +S+GF F+ +E+      +
Sbjct:     4 DEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63

Query:    92 VDNLNGVKVLSRTIRVDHVNDYKPPKDNKY 121
             +  +NG  V  R IRVD        +   Y
Sbjct:    64 MMAMNGKSVDGRQIRVDQAGKSSDNRSRGY 93


>UNIPROTKB|Q9DED4 [details] [associations]
            symbol:cirbp-b "Cold-inducible RNA-binding protein B"
            species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
            evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
            [GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
            evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0007369
            "gastrulation" evidence=IMP] [GO:0009409 "response to cold"
            evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
            [GO:0016477 "cell migration" evidence=IMP] [GO:0019899 "enzyme
            binding" evidence=IPI] [GO:0022008 "neurogenesis" evidence=IMP]
            [GO:0045727 "positive regulation of translation" evidence=ISS]
            [GO:0048255 "mRNA stabilization" evidence=IGI;IMP] [GO:0048793
            "pronephros development" evidence=ISS] [GO:0060212 "negative
            regulation of nuclear-transcribed mRNA poly(A) tail shortening"
            evidence=IMP] [GO:0005840 "ribosome" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
            GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
            Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
            GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480 GO:GO:0060212
            EMBL:AB044535 EMBL:BC054250 RefSeq:NP_001079794.1 UniGene:Xl.8151
            HSSP:P09651 ProteinModelPortal:Q9DED4 SMR:Q9DED4 MINT:MINT-274223
            PRIDE:Q9DED4 GeneID:379484 KEGG:xla:379484 CTD:379484
            Xenbase:XB-GENE-492785 KO:K13195 Uniprot:Q9DED4
        Length = 166

 Score = 135 (52.6 bits), Expect = 3.6e-09, P = 3.6e-09
 Identities = 28/77 (36%), Positives = 48/77 (62%)

Query:    32 DSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLS 91
             D   +F+GGL +D +E  +  +FS+YG+I  + +V+D+ T +S+GF F+ +E+      +
Sbjct:     3 DEGKLFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDA 62

Query:    92 VDNLNGVKVLSRTIRVD 108
             +  +NG  V  R IRVD
Sbjct:    63 MMAMNGKAVDGRQIRVD 79


>MGI|MGI:893588 [details] [associations]
            symbol:Cirbp "cold inducible RNA binding protein"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR
            binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO;IDA]
            [GO:0005737 "cytoplasm" evidence=ISO;IDA] [GO:0006950 "response to
            stress" evidence=IEA] [GO:0009411 "response to UV" evidence=ISO]
            [GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0017148
            "negative regulation of translation" evidence=IDA] [GO:0030371
            "translation repressor activity" evidence=IDA] [GO:0034063 "stress
            granule assembly" evidence=IDA] [GO:0045727 "positive regulation of
            translation" evidence=ISO] [GO:0048255 "mRNA stabilization"
            evidence=ISO] [GO:0070181 "SSU rRNA binding" evidence=ISO]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 MGI:MGI:893588 GO:GO:0005634 GO:GO:0009411
            GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
            Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
            GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
            GO:GO:0070181 KO:K13195 CTD:1153 HOGENOM:HOG000276232 OMA:ENRSRGY
            OrthoDB:EOG4HHP40 ChiTaRS:CIRBP EMBL:D78135 EMBL:AK014655
            EMBL:AK132584 EMBL:BC075699 IPI:IPI00121073 RefSeq:NP_031731.1
            UniGene:Mm.17898 ProteinModelPortal:P60824 SMR:P60824 STRING:P60824
            PhosphoSite:P60824 PaxDb:P60824 PRIDE:P60824
            Ensembl:ENSMUST00000105365 GeneID:12696 KEGG:mmu:12696
            UCSC:uc007gce.1 GeneTree:ENSGT00700000104309 InParanoid:P60824
            NextBio:281950 Bgee:P60824 CleanEx:MM_CIRBP Genevestigator:P60824
            GermOnline:ENSMUSG00000045193 Uniprot:P60824
        Length = 172

 Score = 135 (52.6 bits), Expect = 3.6e-09, P = 3.6e-09
 Identities = 30/90 (33%), Positives = 50/90 (55%)

Query:    32 DSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLS 91
             D   +FVGGL +D +E  +  +FS+YG+I  + +V+D+ T +S+GF F+ +E+      +
Sbjct:     4 DEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63

Query:    92 VDNLNGVKVLSRTIRVDHVNDYKPPKDNKY 121
             +  +NG  V  R IRVD        +   Y
Sbjct:    64 MMAMNGKSVDGRQIRVDQAGKSSDNRSRGY 93


>RGD|620756 [details] [associations]
            symbol:Cirbp "cold inducible RNA binding protein" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003730 "mRNA 3'-UTR binding" evidence=ISO;ISS] [GO:0005634
            "nucleus" evidence=ISO;ISS] [GO:0005654 "nucleoplasm" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=ISO;ISS] [GO:0009409 "response to
            cold" evidence=IEP] [GO:0009411 "response to UV" evidence=ISO;ISS]
            [GO:0010494 "cytoplasmic stress granule" evidence=ISO;ISS]
            [GO:0017148 "negative regulation of translation" evidence=ISO]
            [GO:0030371 "translation repressor activity" evidence=ISO;ISS]
            [GO:0034063 "stress granule assembly" evidence=ISO;ISS] [GO:0045727
            "positive regulation of translation" evidence=ISO;ISS] [GO:0048255
            "mRNA stabilization" evidence=ISO;ISS] [GO:0070181 "SSU rRNA
            binding" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:620756 GO:GO:0005634
            GO:GO:0009411 GO:GO:0005654 GO:GO:0000166 GO:GO:0030371
            GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
            GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724
            HOVERGEN:HBG107480 GO:GO:0070181 HOGENOM:HOG000276232
            OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309 EMBL:AB000362
            IPI:IPI00201031 UniGene:Rn.28931 ProteinModelPortal:P60825
            SMR:P60825 IntAct:P60825 STRING:P60825 PRIDE:P60825
            Ensembl:ENSRNOT00000021648 UCSC:RGD:620756 InParanoid:P60825
            Genevestigator:P60825 GermOnline:ENSRNOG00000015999 Uniprot:P60825
        Length = 172

 Score = 135 (52.6 bits), Expect = 3.6e-09, P = 3.6e-09
 Identities = 30/90 (33%), Positives = 50/90 (55%)

Query:    32 DSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLS 91
             D   +FVGGL +D +E  +  +FS+YG+I  + +V+D+ T +S+GF F+ +E+      +
Sbjct:     4 DEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63

Query:    92 VDNLNGVKVLSRTIRVDHVNDYKPPKDNKY 121
             +  +NG  V  R IRVD        +   Y
Sbjct:    64 MMAMNGKSVDGRQIRVDQAGKSSDNRSRGY 93


>TAIR|locus:2033888 [details] [associations]
            symbol:Y14 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;IEA]
            [GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0005654 "nucleoplasm"
            evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0016604
            "nuclear body" evidence=IDA] [GO:0005515 "protein binding"
            evidence=IPI] [GO:0035145 "exon-exon junction complex"
            evidence=IPI] [GO:0010628 "positive regulation of gene expression"
            evidence=IEP] InterPro:IPR000504 InterPro:IPR008111
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR01738 PROSITE:PS50102
            SMART:SM00360 EMBL:CP002684 GO:GO:0005737 GO:GO:0005730
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396
            GO:GO:0010628 GO:GO:0016604 GO:GO:0035145 KO:K12876 IPI:IPI00540540
            RefSeq:NP_564591.1 UniGene:At.18276 ProteinModelPortal:F4I9J7
            SMR:F4I9J7 PRIDE:F4I9J7 EnsemblPlants:AT1G51510.1 GeneID:841576
            KEGG:ath:AT1G51510 OMA:WIILVTG Uniprot:F4I9J7
        Length = 202

 Score = 135 (52.6 bits), Expect = 3.6e-09, P = 3.6e-09
 Identities = 34/119 (28%), Positives = 57/119 (47%)

Query:    11 KKLSEQELSS-GSKTSWHDQYKDSAWIF-VGGLPYDLSEGDVICIFSQYGEIVNLNLVRD 68
             ++LS ++  S GS      Q     WI  V G+  +  E D+   F  +GEI NLNL  D
Sbjct:    70 RRLSSRDFESLGSDGRPGPQRSVEGWIILVSGVHEETQEEDITNAFGDFGEIKNLNLNLD 129

Query:    69 KITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHVNDYKPPKDNKYTDEETK 127
             + +G  KG+  I YE +     ++  +NG ++L++ + VD      P     Y  + ++
Sbjct:   130 RRSGYVKGYALIEYEKKEEAQSAISAMNGAELLTQNVSVDWAFSSGPSGGESYRRKNSR 188


>WB|WBGene00011059 [details] [associations]
            symbol:R06C1.4 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
            HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 HSSP:P33240
            EMBL:Z81106 PIR:T23960 RefSeq:NP_493029.1 ProteinModelPortal:O62337
            SMR:O62337 STRING:O62337 PaxDb:O62337 EnsemblMetazoa:R06C1.4
            GeneID:173076 KEGG:cel:CELE_R06C1.4 UCSC:R06C1.4 CTD:173076
            WormBase:R06C1.4 InParanoid:O62337 OMA:RVYLPVD NextBio:878179
            Uniprot:O62337
        Length = 84

 Score = 135 (52.6 bits), Expect = 3.6e-09, P = 3.6e-09
 Identities = 24/76 (31%), Positives = 46/76 (60%)

Query:    36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
             ++VG +PY  +E ++   F+  G + N+ +V D+ TG+ +GF F+ + ++     +V+ L
Sbjct:     8 VYVGNVPYQGTEEEIGNYFAAVGHVNNVRIVYDRETGRPRGFAFVEFSEEAGAQRAVEQL 67

Query:    96 NGVKVLSRTIRVDHVN 111
             NGV    R +RV++ N
Sbjct:    68 NGVAFNGRNLRVNYAN 83


>WB|WBGene00011156 [details] [associations]
            symbol:R09B3.3 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
            "embryo development ending in birth or egg hatching" evidence=IMP]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 eggNOG:COG0724 HOGENOM:HOG000276232
            GeneTree:ENSGT00550000074641 EMBL:Z81108 HSSP:P33240 PIR:T24068
            RefSeq:NP_493023.1 ProteinModelPortal:O45713 SMR:O45713
            IntAct:O45713 STRING:O45713 PaxDb:O45713 EnsemblMetazoa:R09B3.3
            GeneID:173071 KEGG:cel:CELE_R09B3.3 UCSC:R09B3.3 CTD:173071
            WormBase:R09B3.3 InParanoid:O45713 OMA:KRVHIPT NextBio:878159
            Uniprot:O45713
        Length = 85

 Score = 135 (52.6 bits), Expect = 3.6e-09, P = 3.6e-09
 Identities = 25/73 (34%), Positives = 44/73 (60%)

Query:    36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
             ++VG  P+  +E D+   FSQ G + N+ +V D+ TG+ +GF F+ + ++ +   +VD  
Sbjct:     6 VYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQRAVDQF 65

Query:    96 NGVKVLSRTIRVD 108
             NGV    R +RV+
Sbjct:    66 NGVDFNGRALRVN 78


>UNIPROTKB|O45713 [details] [associations]
            symbol:R09B3.3 "Protein R09B3.3" species:6239
            "Caenorhabditis elegans" [GO:0005515 "protein binding"
            evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
            HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 EMBL:Z81108
            HSSP:P33240 PIR:T24068 RefSeq:NP_493023.1 ProteinModelPortal:O45713
            SMR:O45713 IntAct:O45713 STRING:O45713 PaxDb:O45713
            EnsemblMetazoa:R09B3.3 GeneID:173071 KEGG:cel:CELE_R09B3.3
            UCSC:R09B3.3 CTD:173071 WormBase:R09B3.3 InParanoid:O45713
            OMA:KRVHIPT NextBio:878159 Uniprot:O45713
        Length = 85

 Score = 135 (52.6 bits), Expect = 3.6e-09, P = 3.6e-09
 Identities = 25/73 (34%), Positives = 44/73 (60%)

Query:    36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
             ++VG  P+  +E D+   FSQ G + N+ +V D+ TG+ +GF F+ + ++ +   +VD  
Sbjct:     6 VYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQRAVDQF 65

Query:    96 NGVKVLSRTIRVD 108
             NGV    R +RV+
Sbjct:    66 NGVDFNGRALRVN 78


>ZFIN|ZDB-GENE-050306-51 [details] [associations]
            symbol:rbm8a "RNA binding motif protein 8A"
            species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003723
            "RNA binding" evidence=IEA] [GO:0006396 "RNA processing"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0000184
            "nuclear-transcribed mRNA catabolic process, nonsense-mediated
            decay" evidence=IEA] [GO:0006417 "regulation of translation"
            evidence=IEA] [GO:0006810 "transport" evidence=IEA] [GO:0051028
            "mRNA transport" evidence=IEA] [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0016607
            "nuclear speck" evidence=IEA] InterPro:IPR000504 InterPro:IPR008111
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR01738 PROSITE:PS50102
            SMART:SM00360 ZFIN:ZDB-GENE-050306-51 GO:GO:0005737 GO:GO:0006417
            GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0016607
            GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0051028
            eggNOG:COG0724 GeneTree:ENSGT00550000074641 CTD:9939
            HOGENOM:HOG000183826 KO:K12876 OMA:WILFVTS OrthoDB:EOG42822W
            EMBL:BC090261 IPI:IPI00505312 RefSeq:NP_001013363.1
            UniGene:Dr.76821 HSSP:Q9Y5S9 ProteinModelPortal:Q5D018 SMR:Q5D018
            STRING:Q5D018 PRIDE:Q5D018 Ensembl:ENSDART00000018253 GeneID:503767
            KEGG:dre:503767 InParanoid:Q5D018 NextBio:20866311 Bgee:Q5D018
            Uniprot:Q5D018
        Length = 174

 Score = 135 (52.6 bits), Expect = 3.6e-09, P = 3.6e-09
 Identities = 31/87 (35%), Positives = 50/87 (57%)

Query:    35 WI-FVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVD 93
             WI FV G+  + +E DV   F+++GEI NL+L  D+ TG  KG+  + YE  +    +++
Sbjct:    73 WILFVTGVHEEATEEDVHDKFAEFGEIKNLHLNLDRRTGYLKGYALVEYETYKEAQAAME 132

Query:    94 NLNGVKVLSRTIRVDHVNDYKPPKDNK 120
              LNG +++ + I VD      PPK  +
Sbjct:   133 GLNGQELMGQPISVDWCFVRGPPKSKR 159


>UNIPROTKB|B4DTC3 [details] [associations]
            symbol:HNRNPD "cDNA FLJ54150, highly similar to
            Heterogeneous nuclear ribonucleoprotein D0" species:9606 "Homo
            sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0030529 "ribonucleoprotein
            complex" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GO:GO:0030529 HOGENOM:HOG000234441 HOVERGEN:HBG002295 EMBL:AC124016
            UniGene:Hs.480073 HGNC:HGNC:5036 ChiTaRS:HNRNPD InterPro:IPR012956
            Pfam:PF08143 EMBL:AK300149 IPI:IPI01014602 SMR:B4DTC3 STRING:B4DTC3
            Ensembl:ENST00000543098 Uniprot:B4DTC3
        Length = 303

 Score = 140 (54.3 bits), Expect = 3.7e-09, P = 3.7e-09
 Identities = 39/120 (32%), Positives = 62/120 (51%)

Query:    19 SSGSKTSWHDQYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFC 78
             S G+K       +D   +F+GGL +D ++ D+   FS++GE+V+  L  D ITG+S+GF 
Sbjct:    30 SEGAKIDASKNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFG 89

Query:    79 FICYEDQRSTVLSVDNLNGVKVLSRTIRVDHVNDYKPPKDNKYTDEETKKLRTIGCAPGT 138
             F+ +++  S    +D     K+  + I      D K  K  K T E  KK+   G +P T
Sbjct:    90 FVLFKESESVDKVMDQKEH-KLNGKVI------DPKRAKAMK-TKEPVKKIFVGGLSPDT 141


>TAIR|locus:2202740 [details] [associations]
            symbol:AT1G60000 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0005739 "mitochondrion" evidence=ISM] [GO:0008150
            "biological_process" evidence=ND] [GO:0009507 "chloroplast"
            evidence=ISM] [GO:0019344 "cysteine biosynthetic process"
            evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
            GenomeReviews:CT485782_GR GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 EMBL:AC005966 HOGENOM:HOG000276232 HSSP:P33240
            EMBL:AF348590 EMBL:AY088142 EMBL:AK316953 IPI:IPI00532959
            PIR:C96624 RefSeq:NP_176208.1 UniGene:At.17057
            ProteinModelPortal:Q9ZUJ3 SMR:Q9ZUJ3 STRING:Q9ZUJ3 PRIDE:Q9ZUJ3
            EnsemblPlants:AT1G60000.1 GeneID:842294 KEGG:ath:AT1G60000
            TAIR:At1g60000 InParanoid:Q9ZUJ3 OMA:NVEDCNI PhylomeDB:Q9ZUJ3
            ProtClustDB:CLSN2913540 ArrayExpress:Q9ZUJ3 Genevestigator:Q9ZUJ3
            Uniprot:Q9ZUJ3
        Length = 258

 Score = 138 (53.6 bits), Expect = 3.7e-09, P = 3.7e-09
 Identities = 33/118 (27%), Positives = 58/118 (49%)

Query:    12 KLSEQELSSGSKTSWHDQYKDSAWIFVGGLPYDLSEGDVICIFSQYG--EIVNLNLVRDK 69
             KL E+E   G+          +  ++ G LPY++    +  I   +   E+V +   RD 
Sbjct:    63 KLEEEEKDDGASAVLDPPAAVNTKLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRD- 121

Query:    70 ITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHVNDYKPPKDNKYTDEETK 127
              TG+S+GF F+   +     + +DNL+G + L R ++V+  +  KP K+  Y + E K
Sbjct:   122 -TGQSRGFAFVTMSNVEDCNIIIDNLDGTEYLGRALKVNFADKPKPNKEPLYPETEHK 178

 Score = 119 (46.9 bits), Expect = 5.2e-07, P = 5.2e-07
 Identities = 22/73 (30%), Positives = 44/73 (60%)

Query:    36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
             +FVG L + ++   +   F + G++V   +V D  TG+S+G+ F+CY  +     ++++L
Sbjct:   179 LFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALESL 238

Query:    96 NGVKVLSRTIRVD 108
             +G ++  R IRV+
Sbjct:   239 DGFELEGRAIRVN 251


>UNIPROTKB|F1LRX3 [details] [associations]
            symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
            norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0017091 "AU-rich element binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
            SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 TIGRFAMs:TIGR01661 IPI:IPI00808644
            Ensembl:ENSRNOT00000067007 ArrayExpress:F1LRX3 Uniprot:F1LRX3
        Length = 380

 Score = 142 (55.0 bits), Expect = 3.7e-09, P = 3.7e-09
 Identities = 33/108 (30%), Positives = 61/108 (56%)

Query:     3 PLTNVKNIKKLSEQELSSGSKT-SWHDQYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIV 61
             P +N  N    + +   S  +T +  D  K +  + V  LP ++++ +   +F   GEI 
Sbjct:    16 PTSNTSNGPSSNNRNCPSPMQTGAATDDSKTN--LIVNYLPQNMTQEEFRSLFGSIGEIE 73

Query:    62 NLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDH 109
             +  LVRDKITG+S G+ F+ Y D +    +++ LNG+++ ++TI+V +
Sbjct:    74 SCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSY 121

 Score = 112 (44.5 bits), Expect = 6.8e-05, P = 6.8e-05
 Identities = 25/79 (31%), Positives = 45/79 (56%)

Query:    36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
             ++V GLP  +++ ++  +FSQYG I+   ++ D++TG S+G  FI ++ +     ++  L
Sbjct:   134 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 193

Query:    96 NGVKVLSRT--IRVDHVND 112
             NG K    T  I V   N+
Sbjct:   194 NGQKPSGATEPITVKFANN 212


>UNIPROTKB|F1P856 [details] [associations]
            symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
            Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
            GeneTree:ENSGT00560000077064 OMA:SNSRNCP EMBL:AAEX03009733
            Ensembl:ENSCAFT00000006315 Uniprot:F1P856
        Length = 382

 Score = 142 (55.0 bits), Expect = 3.7e-09, P = 3.7e-09
 Identities = 33/108 (30%), Positives = 61/108 (56%)

Query:     3 PLTNVKNIKKLSEQELSSGSKT-SWHDQYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIV 61
             P +N  N    + +   S  +T +  D  K +  + V  LP ++++ +   +F   GEI 
Sbjct:    32 PTSNTSNGPSSNNRNCPSPMQTGAATDDSKTN--LIVNYLPQNMTQEEFRSLFGSIGEIE 89

Query:    62 NLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDH 109
             +  LVRDKITG+S G+ F+ Y D +    +++ LNG+++ ++TI+V +
Sbjct:    90 SCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSY 137

 Score = 112 (44.5 bits), Expect = 6.9e-05, P = 6.9e-05
 Identities = 25/79 (31%), Positives = 45/79 (56%)

Query:    36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
             ++V GLP  +++ ++  +FSQYG I+   ++ D++TG S+G  FI ++ +     ++  L
Sbjct:   150 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 209

Query:    96 NGVKVLSRT--IRVDHVND 112
             NG K    T  I V   N+
Sbjct:   210 NGQKPSGATEPITVKFANN 228


>UNIPROTKB|F1LRL1 [details] [associations]
            symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
            norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0017091 "AU-rich element binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
            SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0017091 TIGRFAMs:TIGR01661 IPI:IPI00763452
            Ensembl:ENSRNOT00000064277 ArrayExpress:F1LRL1 Uniprot:F1LRL1
        Length = 384

 Score = 142 (55.0 bits), Expect = 3.8e-09, P = 3.8e-09
 Identities = 33/108 (30%), Positives = 61/108 (56%)

Query:     3 PLTNVKNIKKLSEQELSSGSKT-SWHDQYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIV 61
             P +N  N    + +   S  +T +  D  K +  + V  LP ++++ +   +F   GEI 
Sbjct:    20 PTSNTSNGPSSNNRNCPSPMQTGAATDDSKTN--LIVNYLPQNMTQEEFRSLFGSIGEIE 77

Query:    62 NLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDH 109
             +  LVRDKITG+S G+ F+ Y D +    +++ LNG+++ ++TI+V +
Sbjct:    78 SCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSY 125

 Score = 112 (44.5 bits), Expect = 6.9e-05, P = 6.9e-05
 Identities = 25/79 (31%), Positives = 45/79 (56%)

Query:    36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
             ++V GLP  +++ ++  +FSQYG I+   ++ D++TG S+G  FI ++ +     ++  L
Sbjct:   138 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 197

Query:    96 NGVKVLSRT--IRVDHVND 112
             NG K    T  I V   N+
Sbjct:   198 NGQKPSGATEPITVKFANN 216


>MGI|MGI:107427 [details] [associations]
            symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
            Drosophila)-like 4 (Hu antigen D)" species:10090 "Mus musculus"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0017091 "AU-rich element binding" evidence=ISO]
            InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
            SMART:SM00360 MGI:MGI:107427 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0017091 eggNOG:COG0724 EMBL:AL627425 HOVERGEN:HBG002295
            HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
            GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
            EMBL:D31953 EMBL:AF041341 IPI:IPI00229977 IPI:IPI00466120
            PIR:JC2298 RefSeq:NP_034618.2 UniGene:Mm.3970
            ProteinModelPortal:Q61701 SMR:Q61701 STRING:Q61701
            PhosphoSite:Q61701 PaxDb:Q61701 PRIDE:Q61701
            Ensembl:ENSMUST00000106597 GeneID:15572 KEGG:mmu:15572
            InParanoid:A2A9R7 OMA:SNSRNCP NextBio:288560 Bgee:Q61701
            Genevestigator:Q61701 GermOnline:ENSMUSG00000028546 Uniprot:Q61701
        Length = 385

 Score = 142 (55.0 bits), Expect = 3.8e-09, P = 3.8e-09
 Identities = 33/108 (30%), Positives = 61/108 (56%)

Query:     3 PLTNVKNIKKLSEQELSSGSKT-SWHDQYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIV 61
             P +N  N    + +   S  +T +  D  K +  + V  LP ++++ +   +F   GEI 
Sbjct:    21 PTSNTSNGPSSNNRNCPSPMQTGAATDDSKTN--LIVNYLPQNMTQEEFRSLFGSIGEIE 78

Query:    62 NLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDH 109
             +  LVRDKITG+S G+ F+ Y D +    +++ LNG+++ ++TI+V +
Sbjct:    79 SCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSY 126

 Score = 112 (44.5 bits), Expect = 7.0e-05, P = 7.0e-05
 Identities = 25/79 (31%), Positives = 45/79 (56%)

Query:    36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
             ++V GLP  +++ ++  +FSQYG I+   ++ D++TG S+G  FI ++ +     ++  L
Sbjct:   139 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 198

Query:    96 NGVKVLSRT--IRVDHVND 112
             NG K    T  I V   N+
Sbjct:   199 NGQKPSGATEPITVKFANN 217


>UNIPROTKB|F1N2T0 [details] [associations]
            symbol:HNRPDL "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104347
            OMA:QHPPADN EMBL:DAAA02018246 IPI:IPI00697542 UniGene:Bt.23277
            PRIDE:F1N2T0 Ensembl:ENSBTAT00000019699 ArrayExpress:F1N2T0
            Uniprot:F1N2T0
        Length = 420

 Score = 142 (55.0 bits), Expect = 4.5e-09, P = 4.5e-09
 Identities = 34/106 (32%), Positives = 60/106 (56%)

Query:    16 QELSSGSKTSWHDQYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSK 75
             +E + GSK +     +D   +F+GGL +D S+ D+    S++GE+V+  +  D +TG+S+
Sbjct:   130 EEFAEGSKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSR 189

Query:    76 GFCFICYEDQRST--VLSVDN--LNGVKVLSRTIRVDHVNDYKPPK 117
             GF F+ ++D  S   VL +    L+G K++    R   +   +PPK
Sbjct:   190 GFGFVLFKDAASVDKVLELKEHKLDG-KLIDPK-RAKALKGKEPPK 233

 Score = 115 (45.5 bits), Expect = 2.3e-05, P = 2.3e-05
 Identities = 23/50 (46%), Positives = 30/50 (60%)

Query:    36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQ 85
             +FVGGL  D SE  +   F  +GEI N+ L  D  T + +GFCFI Y D+
Sbjct:   235 VFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDE 284


>UNIPROTKB|E2QRT0 [details] [associations]
            symbol:HNRPDL "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 CTD:9987
            GeneTree:ENSGT00700000104347 KO:K13044 OMA:QHPPADN
            EMBL:AAEX03016723 RefSeq:XP_858404.1 Ensembl:ENSCAFT00000014224
            GeneID:476976 KEGG:cfa:476976 NextBio:20852539 Uniprot:E2QRT0
        Length = 420

 Score = 142 (55.0 bits), Expect = 4.5e-09, P = 4.5e-09
 Identities = 34/106 (32%), Positives = 60/106 (56%)

Query:    16 QELSSGSKTSWHDQYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSK 75
             +E + GSK +     +D   +F+GGL +D S+ D+    S++GE+V+  +  D +TG+S+
Sbjct:   130 EEFAEGSKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSR 189

Query:    76 GFCFICYEDQRST--VLSVDN--LNGVKVLSRTIRVDHVNDYKPPK 117
             GF F+ ++D  S   VL +    L+G K++    R   +   +PPK
Sbjct:   190 GFGFVLFKDAASVDKVLELKEHKLDG-KLIDPK-RAKALKGKEPPK 233

 Score = 115 (45.5 bits), Expect = 2.3e-05, P = 2.3e-05
 Identities = 23/50 (46%), Positives = 30/50 (60%)

Query:    36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQ 85
             +FVGGL  D SE  +   F  +GEI N+ L  D  T + +GFCFI Y D+
Sbjct:   235 VFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDE 284


>UNIPROTKB|O14979 [details] [associations]
            symbol:HNRPDL "Heterogeneous nuclear ribonucleoprotein
            D-like" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA;IDA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003690
            "double-stranded DNA binding" evidence=IDA] [GO:0003697
            "single-stranded DNA binding" evidence=IDA] [GO:0008143 "poly(A)
            RNA binding" evidence=IDA] [GO:0034046 "poly(G) RNA binding"
            evidence=IDA] [GO:0005681 "spliceosomal complex" evidence=NAS]
            [GO:0006396 "RNA processing" evidence=NAS] [GO:0010468 "regulation
            of gene expression" evidence=IDA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:D89678 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0000166
            GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0005681
            GO:GO:0003723 GO:GO:0006396 GO:GO:0003690 GO:GO:0003697
            GO:GO:0010468 GO:GO:0034046 eggNOG:COG0724 GO:GO:0008143
            HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103 CTD:9987
            KO:K13044 EMBL:AB017019 EMBL:D89092 EMBL:AB066484 EMBL:CR407623
            EMBL:AC124016 EMBL:AB017018 EMBL:BC007392 EMBL:BC011714
            EMBL:BC071944 EMBL:AY453824 IPI:IPI00011274 IPI:IPI00045498
            IPI:IPI00845282 PIR:JW0079 RefSeq:NP_001193929.1 RefSeq:NP_112740.1
            UniGene:Hs.527105 UniGene:Hs.731516 ProteinModelPortal:O14979
            SMR:O14979 IntAct:O14979 STRING:O14979 PhosphoSite:O14979
            PaxDb:O14979 PRIDE:O14979 DNASU:9987 Ensembl:ENST00000295470
            Ensembl:ENST00000349655 Ensembl:ENST00000502762 GeneID:9987
            KEGG:hsa:9987 UCSC:uc003hmr.3 GeneCards:GC04M083343 HGNC:HGNC:5037
            MIM:607137 neXtProt:NX_O14979 PharmGKB:PA29362 InParanoid:O14979
            OMA:QHPPADN OrthoDB:EOG49W2FZ PhylomeDB:O14979 ChiTaRS:HNRPDL
            GenomeRNAi:9987 NextBio:37714 ArrayExpress:O14979 Bgee:O14979
            CleanEx:HS_HNRPDL Genevestigator:O14979 Uniprot:O14979
        Length = 420

 Score = 142 (55.0 bits), Expect = 4.5e-09, P = 4.5e-09
 Identities = 34/106 (32%), Positives = 60/106 (56%)

Query:    16 QELSSGSKTSWHDQYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSK 75
             +E + GSK +     +D   +F+GGL +D S+ D+    S++GE+V+  +  D +TG+S+
Sbjct:   130 EEFAEGSKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSR 189

Query:    76 GFCFICYEDQRST--VLSVDN--LNGVKVLSRTIRVDHVNDYKPPK 117
             GF F+ ++D  S   VL +    L+G K++    R   +   +PPK
Sbjct:   190 GFGFVLFKDAASVDKVLELKEHKLDG-KLIDPK-RAKALKGKEPPK 233

 Score = 115 (45.5 bits), Expect = 2.3e-05, P = 2.3e-05
 Identities = 23/50 (46%), Positives = 30/50 (60%)

Query:    36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQ 85
             +FVGGL  D SE  +   F  +GEI N+ L  D  T + +GFCFI Y D+
Sbjct:   235 VFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDE 284


>UNIPROTKB|F1NLH0 [details] [associations]
            symbol:ELAVL4 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0017091 "AU-rich element binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
            TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:SNSRNCP
            EMBL:AADN02012596 IPI:IPI00594347 ProteinModelPortal:F1NLH0
            Ensembl:ENSGALT00000017146 Uniprot:F1NLH0
        Length = 371

 Score = 141 (54.7 bits), Expect = 4.5e-09, P = 4.5e-09
 Identities = 33/108 (30%), Positives = 61/108 (56%)

Query:     3 PLTNVKNIKKLSEQELSSGSKT-SWHDQYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIV 61
             P +N  N    + +   S  +T +  D  K +  + V  LP ++++ +   +F   GEI 
Sbjct:    21 PTSNTTNGPSSNSRNCPSPMQTGAATDDSKTN--LIVNYLPQNMTQEEFRSLFGSIGEIE 78

Query:    62 NLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDH 109
             +  LVRDKITG+S G+ F+ Y D +    +++ LNG+++ ++TI+V +
Sbjct:    79 SCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSY 126

 Score = 112 (44.5 bits), Expect = 6.6e-05, P = 6.6e-05
 Identities = 25/79 (31%), Positives = 45/79 (56%)

Query:    36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
             ++V GLP  +++ ++  +FSQYG I+   ++ D++TG S+G  FI ++ +     ++  L
Sbjct:   139 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 198

Query:    96 NGVKVLSRT--IRVDHVND 112
             NG K    T  I V   N+
Sbjct:   199 NGQKPSGATEPITVKFANN 217


>UNIPROTKB|D6RBQ9 [details] [associations]
            symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            HOGENOM:HOG000234441 EMBL:AC124016 HGNC:HGNC:5036 ChiTaRS:HNRNPD
            InterPro:IPR012956 Pfam:PF08143 IPI:IPI00963980
            ProteinModelPortal:D6RBQ9 SMR:D6RBQ9 Ensembl:ENST00000503822
            ArrayExpress:D6RBQ9 Bgee:D6RBQ9 Uniprot:D6RBQ9
        Length = 155

 Score = 134 (52.2 bits), Expect = 4.7e-09, P = 4.7e-09
 Identities = 31/87 (35%), Positives = 51/87 (58%)

Query:    19 SSGSKTSWHDQYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFC 78
             S G+K       +D   +F+GGL +D ++ D+   FS++GE+V+  L  D ITG+S+GF 
Sbjct:    63 SEGAKIDASKNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFG 122

Query:    79 FICYEDQRSTVLSVDN----LNGVKVL 101
             F+ +++  S    +D     LNG KV+
Sbjct:   123 FVLFKESESVDKVMDQKEHKLNG-KVI 148


>TAIR|locus:2136298 [details] [associations]
            symbol:CCR1 "cold, circadian rhythm, and RNA binding 1"
            species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
            "nucleus" evidence=ISM] [GO:0009507 "chloroplast" evidence=IDA]
            [GO:0005730 "nucleolus" evidence=IDA] [GO:0009409 "response to
            cold" evidence=IEP] [GO:0005618 "cell wall" evidence=IDA]
            [GO:0045087 "innate immune response" evidence=IDA] [GO:0005886
            "plasma membrane" evidence=IDA] [GO:0009651 "response to salt
            stress" evidence=IEP] [GO:0005777 "peroxisome" evidence=IDA]
            [GO:0010043 "response to zinc ion" evidence=IEP] [GO:0009737
            "response to abscisic acid stimulus" evidence=IDA] [GO:0005829
            "cytosol" evidence=RCA] [GO:0009506 "plasmodesma" evidence=IDA]
            [GO:0048046 "apoplast" evidence=IDA] [GO:0005794 "Golgi apparatus"
            evidence=IDA] [GO:0007623 "circadian rhythm" evidence=RCA]
            [GO:0000380 "alternative mRNA splicing, via spliceosome"
            evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005886 GO:GO:0009506
            GO:GO:0009737 GO:GO:0005794 GO:GO:0005618 GO:GO:0009507
            EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0005730 GO:GO:0005777
            GO:GO:0000166 GO:GO:0010043 GO:GO:0048046 GO:GO:0009651
            GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0003723
            EMBL:AL161594 eggNOG:COG0724 EMBL:AL050351 GO:GO:0000380
            HOGENOM:HOG000276232 UniGene:At.23968 ProtClustDB:CLSN2913158
            EMBL:Z14988 EMBL:L00649 EMBL:L04171 EMBL:AY034997 EMBL:AY063005
            IPI:IPI00520057 IPI:IPI00526742 PIR:S30148 RefSeq:NP_195637.1
            ProteinModelPortal:Q03251 SMR:Q03251 MINT:MINT-1163792
            STRING:Q03251 PaxDb:Q03251 PRIDE:Q03251 ProMEX:Q03251
            EnsemblPlants:AT4G39260.1 GeneID:830082 KEGG:ath:AT4G39260
            TAIR:At4g39260 InParanoid:Q03251 OMA:GNNSGGY Genevestigator:Q03251
            Uniprot:Q03251
        Length = 169

 Score = 134 (52.2 bits), Expect = 4.7e-09, P = 4.7e-09
 Identities = 22/72 (30%), Positives = 50/72 (69%)

Query:    37 FVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLN 96
             FVGGL +  ++ D+   FSQ+G++++  ++ D+ +G+S+GF F+ ++D+++   +++ +N
Sbjct:     9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68

Query:    97 GVKVLSRTIRVD 108
             G ++  R I V+
Sbjct:    69 GKELDGRVITVN 80


>UNIPROTKB|Q86U06 [details] [associations]
            symbol:RBM23 "Probable RNA-binding protein 23" species:9606
            "Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0006397 "mRNA processing" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
            GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
            EMBL:AL132780 EMBL:CH471078 eggNOG:COG0724 EMBL:AL135998
            EMBL:AF087905 EMBL:AF275678 EMBL:AK001344 EMBL:AL834198
            EMBL:BX161440 EMBL:BC002566 EMBL:BC024208 IPI:IPI00168431
            IPI:IPI00376960 IPI:IPI00376962 IPI:IPI00376963 IPI:IPI00386141
            RefSeq:NP_001070819.1 RefSeq:NP_001070820.1 RefSeq:NP_060577.3
            UniGene:Hs.4997 PDB:2CQ4 PDB:2DNZ PDBsum:2CQ4 PDBsum:2DNZ
            ProteinModelPortal:Q86U06 SMR:Q86U06 IntAct:Q86U06
            MINT:MINT-1382566 STRING:Q86U06 PhosphoSite:Q86U06 DMDM:34925229
            PaxDb:Q86U06 PRIDE:Q86U06 DNASU:55147 Ensembl:ENST00000346528
            Ensembl:ENST00000359890 Ensembl:ENST00000399922 GeneID:55147
            KEGG:hsa:55147 UCSC:uc001whg.3 UCSC:uc001whh.3 UCSC:uc001whi.3
            UCSC:uc001whk.1 CTD:55147 GeneCards:GC14M023369 HGNC:HGNC:20155
            HPA:HPA004144 neXtProt:NX_Q86U06 PharmGKB:PA134974852
            HOVERGEN:HBG057646 InParanoid:Q86U06 OMA:VTERLDG PhylomeDB:Q86U06
            ChiTaRS:RBM23 EvolutionaryTrace:Q86U06 GenomeRNAi:55147
            NextBio:58862 ArrayExpress:Q86U06 Bgee:Q86U06 CleanEx:HS_RBM23
            Genevestigator:Q86U06 GermOnline:ENSG00000100461 TIGRFAMs:TIGR01622
            Uniprot:Q86U06
        Length = 439

 Score = 142 (55.0 bits), Expect = 4.9e-09, P = 4.9e-09
 Identities = 27/77 (35%), Positives = 49/77 (63%)

Query:    36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
             ++VG L ++++E  +  IF  +G+I N+ L++D  TG+SKG+ FI + D      +++ L
Sbjct:   265 LYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQL 324

Query:    96 NGVKVLSRTIRVDHVND 112
             NG ++  R +RV HV +
Sbjct:   325 NGFELAGRPMRVGHVTE 341


>UNIPROTKB|J9NZ20 [details] [associations]
            symbol:ZCRB1 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
            PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
            GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
            GO:GO:0003676 Gene3D:4.10.60.10 GeneTree:ENSGT00600000084414
            CTD:85437 KO:K13154 OMA:RXVTIMK EMBL:AAEX03015129
            RefSeq:XP_534835.1 ProteinModelPortal:J9NZ20
            Ensembl:ENSCAFT00000049381 GeneID:477640 KEGG:cfa:477640
            Uniprot:J9NZ20
        Length = 217

 Score = 134 (52.2 bits), Expect = 4.9e-09, P = 4.9e-09
 Identities = 25/71 (35%), Positives = 44/71 (61%)

Query:    36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
             ++V  LP+ L+  D+  IFS+YG++V + +++DK T KSKG  FI + D+ S +     +
Sbjct:    12 VYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSALNCTRAI 71

Query:    96 NGVKVLSRTIR 106
             N  ++  R I+
Sbjct:    72 NNKQLFGRVIK 82


>MGI|MGI:1914447 [details] [associations]
            symbol:Zcrb1 "zinc finger CCHC-type and RNA binding motif 1"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA]
            [GO:0005689 "U12-type spliceosomal complex" evidence=ISO]
            [GO:0006397 "mRNA processing" evidence=IEA] [GO:0008270 "zinc ion
            binding" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
            [GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
            PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
            MGI:MGI:1914447 GO:GO:0005654 GO:GO:0008380 GO:GO:0000166
            GO:GO:0046872 GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330
            GO:GO:0003723 Gene3D:4.10.60.10 HOVERGEN:HBG107480 GO:GO:0005689
            GeneTree:ENSGT00600000084414 HSSP:Q7YZ92 CTD:85437
            HOGENOM:HOG000007632 KO:K13154 OMA:RXVTIMK OrthoDB:EOG4GXFNW
            eggNOG:NOG270852 EMBL:AB095989 EMBL:AK012852 EMBL:AK170136
            EMBL:BC058368 IPI:IPI00112291 IPI:IPI00798500 RefSeq:NP_080301.1
            UniGene:Mm.293181 ProteinModelPortal:Q9CZ96 SMR:Q9CZ96
            STRING:Q9CZ96 PhosphoSite:Q9CZ96 PRIDE:Q9CZ96
            Ensembl:ENSMUST00000076070 Ensembl:ENSMUST00000162160 GeneID:67197
            KEGG:mmu:67197 UCSC:uc007xiu.1 UCSC:uc007xiv.1 InParanoid:Q9CZ96
            ChiTaRS:ZCRB1 NextBio:323848 Bgee:Q9CZ96 CleanEx:MM_ZCRB1
            Genevestigator:Q9CZ96 GermOnline:ENSMUSG00000022635 Uniprot:Q9CZ96
        Length = 217

 Score = 134 (52.2 bits), Expect = 4.9e-09, P = 4.9e-09
 Identities = 25/71 (35%), Positives = 44/71 (61%)

Query:    36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
             ++V  LP+ L+  D+  IFS+YG++V + +++DK T KSKG  FI + D+ S +     +
Sbjct:    12 VYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSALNCTRAI 71

Query:    96 NGVKVLSRTIR 106
             N  ++  R I+
Sbjct:    72 NNKQLFGRVIK 82


>RGD|1309851 [details] [associations]
            symbol:Zcrb1 "zinc finger CCHC-type and RNA binding motif 1"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005654
            "nucleoplasm" evidence=IEA] [GO:0005689 "U12-type spliceosomal
            complex" evidence=IEA;ISO] [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR000504
            InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
            PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
            RGD:1309851 GO:GO:0005654 GO:GO:0008380 GO:GO:0000166 GO:GO:0046872
            GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
            Gene3D:4.10.60.10 HOVERGEN:HBG107480 GO:GO:0005689
            GeneTree:ENSGT00600000084414 HSSP:P62995 CTD:85437
            HOGENOM:HOG000007632 KO:K13154 OMA:RXVTIMK OrthoDB:EOG4GXFNW
            eggNOG:NOG270852 EMBL:BC099747 IPI:IPI00211761
            RefSeq:NP_001030112.1 UniGene:Rn.136969 ProteinModelPortal:Q499V6
            SMR:Q499V6 STRING:Q499V6 Ensembl:ENSRNOT00000006780 GeneID:362990
            KEGG:rno:362990 InParanoid:Q499V6 NextBio:682050
            Genevestigator:Q499V6 GermOnline:ENSRNOG00000004996 Uniprot:Q499V6
        Length = 217

 Score = 134 (52.2 bits), Expect = 4.9e-09, P = 4.9e-09
 Identities = 25/71 (35%), Positives = 44/71 (61%)

Query:    36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
             ++V  LP+ L+  D+  IFS+YG++V + +++DK T KSKG  FI + D+ S +     +
Sbjct:    12 VYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSALNCTRAI 71

Query:    96 NGVKVLSRTIR 106
             N  ++  R I+
Sbjct:    72 NNKQLFGRVIK 82


>UNIPROTKB|E2QVA8 [details] [associations]
            symbol:RBM23 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
            GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
            TIGRFAMs:TIGR01622 ProteinModelPortal:E2QVA8
            Ensembl:ENSCAFT00000017824 Uniprot:E2QVA8
        Length = 440

 Score = 142 (55.0 bits), Expect = 4.9e-09, P = 4.9e-09
 Identities = 27/77 (35%), Positives = 49/77 (63%)

Query:    36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
             ++VG L ++++E  +  IF  +G+I N+ L++D  TG+SKG+ FI + D      +++ L
Sbjct:   266 LYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQL 325

Query:    96 NGVKVLSRTIRVDHVND 112
             NG ++  R +RV HV +
Sbjct:   326 NGFELAGRPMRVGHVTE 342


>UNIPROTKB|D4A7H6 [details] [associations]
            symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
            norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
            Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
            RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
            TIGRFAMs:TIGR01661 IPI:IPI00192584 ProteinModelPortal:D4A7H6
            SMR:D4A7H6 Ensembl:ENSRNOT00000009035 ArrayExpress:D4A7H6
            Uniprot:D4A7H6
        Length = 346

 Score = 140 (54.3 bits), Expect = 5.0e-09, P = 5.0e-09
 Identities = 26/74 (35%), Positives = 49/74 (66%)

Query:    36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
             + V  LP ++++ ++  +F   GEI +  LVRDKITG+S G+ F+ Y D +    +++ L
Sbjct:    41 LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 100

Query:    96 NGVKVLSRTIRVDH 109
             NG+++ ++TI+V +
Sbjct:   101 NGLRLQTKTIKVSY 114

 Score = 110 (43.8 bits), Expect = 0.00011, P = 0.00011
 Identities = 21/64 (32%), Positives = 40/64 (62%)

Query:    36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
             ++V GLP  +++ ++  +FSQYG I+   ++ D++TG S+G  FI ++ +     ++  L
Sbjct:   127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 186

Query:    96 NGVK 99
             NG K
Sbjct:   187 NGQK 190

 Score = 107 (42.7 bits), Expect = 0.00032, P = 0.00032
 Identities = 23/76 (30%), Positives = 41/76 (53%)

Query:    33 SAW-IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLS 91
             + W IFV  L  D  E  +  +F  +G + N+ ++RD  T K KGF F+   +     ++
Sbjct:   261 TGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMA 320

Query:    92 VDNLNGVKVLSRTIRV 107
             + +LNG ++  R ++V
Sbjct:   321 IASLNGYRLGDRVLQV 336


>UNIPROTKB|Q12926 [details] [associations]
            symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
            sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005515
            "protein binding" evidence=IPI] [GO:0003730 "mRNA 3'-UTR binding"
            evidence=TAS] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
            InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
            PROSITE:PS50102 SMART:SM00360 GO:GO:0006355 GO:GO:0000166
            Gene3D:3.30.70.330 EMBL:CH471071 GO:GO:0003730 eggNOG:COG0724
            HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
            EMBL:U12431 EMBL:U29943 EMBL:AB209294 EMBL:AL161628 EMBL:AL445623
            EMBL:BC030692 IPI:IPI00030250 IPI:IPI00219967 PIR:I38726 PIR:I39077
            RefSeq:NP_001164666.1 RefSeq:NP_001164668.1 RefSeq:NP_004423.2
            UniGene:Hs.166109 ProteinModelPortal:Q12926 SMR:Q12926
            STRING:Q12926 PhosphoSite:Q12926 DMDM:93141258 PaxDb:Q12926
            PRIDE:Q12926 DNASU:1993 Ensembl:ENST00000223951
            Ensembl:ENST00000380110 Ensembl:ENST00000380117
            Ensembl:ENST00000397312 Ensembl:ENST00000544538 GeneID:1993
            KEGG:hsa:1993 UCSC:uc003zps.3 UCSC:uc003zpu.3 CTD:1993
            GeneCards:GC09M023690 HGNC:HGNC:3313 HPA:CAB022222 MIM:601673
            neXtProt:NX_Q12926 PharmGKB:PA27741 InParanoid:Q12926 KO:K13208
            OrthoDB:EOG4JHCFV PhylomeDB:Q12926 GenomeRNAi:1993 NextBio:8059
            ArrayExpress:Q12926 Bgee:Q12926 CleanEx:HS_ELAVL2
            Genevestigator:Q12926 GermOnline:ENSG00000107105 Uniprot:Q12926
        Length = 359

 Score = 140 (54.3 bits), Expect = 5.5e-09, P = 5.5e-09
 Identities = 26/74 (35%), Positives = 49/74 (66%)

Query:    36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
             + V  LP ++++ ++  +F   GEI +  LVRDKITG+S G+ F+ Y D +    +++ L
Sbjct:    41 LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 100

Query:    96 NGVKVLSRTIRVDH 109
             NG+++ ++TI+V +
Sbjct:   101 NGLRLQTKTIKVSY 114

 Score = 110 (43.8 bits), Expect = 0.00012, P = 0.00012
 Identities = 21/64 (32%), Positives = 40/64 (62%)

Query:    36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
             ++V GLP  +++ ++  +FSQYG I+   ++ D++TG S+G  FI ++ +     ++  L
Sbjct:   127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 186

Query:    96 NGVK 99
             NG K
Sbjct:   187 NGQK 190

 Score = 107 (42.7 bits), Expect = 0.00035, P = 0.00035
 Identities = 23/76 (30%), Positives = 41/76 (53%)

Query:    33 SAW-IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLS 91
             + W IFV  L  D  E  +  +F  +G + N+ ++RD  T K KGF F+   +     ++
Sbjct:   274 TGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMA 333

Query:    92 VDNLNGVKVLSRTIRV 107
             + +LNG ++  R ++V
Sbjct:   334 IASLNGYRLGDRVLQV 349


>MGI|MGI:1100887 [details] [associations]
            symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
            Drosophila)-like 2 (Hu antigen B)" species:10090 "Mus musculus"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
            SMART:SM00360 MGI:MGI:1100887 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
            HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
            GeneTree:ENSGT00560000077064 CTD:1993 KO:K13208 EMBL:U29088
            IPI:IPI00121676 PIR:JC6057 RefSeq:NP_034616.1 UniGene:Mm.318042
            ProteinModelPortal:Q60899 SMR:Q60899 STRING:Q60899
            PhosphoSite:Q60899 PaxDb:Q60899 PRIDE:Q60899
            Ensembl:ENSMUST00000008633 GeneID:15569 KEGG:mmu:15569
            InParanoid:Q60899 NextBio:288546 Bgee:Q60899 Genevestigator:Q60899
            GermOnline:ENSMUSG00000008489 Uniprot:Q60899
        Length = 360

 Score = 140 (54.3 bits), Expect = 5.5e-09, P = 5.5e-09
 Identities = 26/74 (35%), Positives = 49/74 (66%)

Query:    36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
             + V  LP ++++ ++  +F   GEI +  LVRDKITG+S G+ F+ Y D +    +++ L
Sbjct:    41 LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 100

Query:    96 NGVKVLSRTIRVDH 109
             NG+++ ++TI+V +
Sbjct:   101 NGLRLQTKTIKVSY 114

 Score = 110 (43.8 bits), Expect = 0.00012, P = 0.00012
 Identities = 21/64 (32%), Positives = 40/64 (62%)

Query:    36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
             ++V GLP  +++ ++  +FSQYG I+   ++ D++TG S+G  FI ++ +     ++  L
Sbjct:   127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 186

Query:    96 NGVK 99
             NG K
Sbjct:   187 NGQK 190

 Score = 107 (42.7 bits), Expect = 0.00035, P = 0.00035
 Identities = 23/76 (30%), Positives = 41/76 (53%)

Query:    33 SAW-IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLS 91
             + W IFV  L  D  E  +  +F  +G + N+ ++RD  T K KGF F+   +     ++
Sbjct:   275 TGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMA 334

Query:    92 VDNLNGVKVLSRTIRV 107
             + +LNG ++  R ++V
Sbjct:   335 IASLNGYRLGDRVLQV 350


>UNIPROTKB|I3LPP8 [details] [associations]
            symbol:RBM23 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0006397 "mRNA processing" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0003723 OMA:VTERLDG TIGRFAMs:TIGR01622
            GeneTree:ENSGT00690000102089 Ensembl:ENSSSCT00000022566
            Uniprot:I3LPP8
        Length = 423

 Score = 141 (54.7 bits), Expect = 5.8e-09, P = 5.8e-09
 Identities = 26/77 (33%), Positives = 49/77 (63%)

Query:    36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
             ++VG L ++++E  +  IF  +G+I N+ L++D  TG+SKG+ FI + D      +++ L
Sbjct:   256 LYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQL 315

Query:    96 NGVKVLSRTIRVDHVND 112
             NG ++  R +R+ HV +
Sbjct:   316 NGFELAGRPMRIGHVTE 332


>UNIPROTKB|B1AM49 [details] [associations]
            symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
            sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
            "RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
            InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623
            UniGene:Hs.166109 HGNC:HGNC:3313 OMA:RAVENGP SMR:B1AM49
            Ensembl:ENST00000359598 Uniprot:B1AM49
        Length = 387

 Score = 140 (54.3 bits), Expect = 6.4e-09, P = 6.4e-09
 Identities = 26/74 (35%), Positives = 49/74 (66%)

Query:    36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
             + V  LP ++++ ++  +F   GEI +  LVRDKITG+S G+ F+ Y D +    +++ L
Sbjct:    69 LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 128

Query:    96 NGVKVLSRTIRVDH 109
             NG+++ ++TI+V +
Sbjct:   129 NGLRLQTKTIKVSY 142

 Score = 110 (43.8 bits), Expect = 0.00014, P = 0.00014
 Identities = 21/64 (32%), Positives = 40/64 (62%)

Query:    36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
             ++V GLP  +++ ++  +FSQYG I+   ++ D++TG S+G  FI ++ +     ++  L
Sbjct:   155 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 214

Query:    96 NGVK 99
             NG K
Sbjct:   215 NGQK 218

 Score = 107 (42.7 bits), Expect = 0.00039, P = 0.00039
 Identities = 23/76 (30%), Positives = 41/76 (53%)

Query:    33 SAW-IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLS 91
             + W IFV  L  D  E  +  +F  +G + N+ ++RD  T K KGF F+   +     ++
Sbjct:   302 TGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMA 361

Query:    92 VDNLNGVKVLSRTIRV 107
             + +LNG ++  R ++V
Sbjct:   362 IASLNGYRLGDRVLQV 377


>UNIPROTKB|E1C240 [details] [associations]
            symbol:ELAVL2 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
            Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
            GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AADN02057847
            EMBL:AADN02057848 EMBL:AADN02057849 EMBL:AADN02057850
            IPI:IPI00584568 ProteinModelPortal:E1C240
            Ensembl:ENSGALT00000025475 Uniprot:E1C240
        Length = 388

 Score = 140 (54.3 bits), Expect = 6.4e-09, P = 6.4e-09
 Identities = 26/74 (35%), Positives = 48/74 (64%)

Query:    36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
             + V  LP  +++ ++  +F   GEI +  LVRDKITG+S G+ F+ Y D +    +++ L
Sbjct:    69 LIVNYLPQSMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPKDAEKAINTL 128

Query:    96 NGVKVLSRTIRVDH 109
             NG+++ ++TI+V +
Sbjct:   129 NGLRLQTKTIKVSY 142

 Score = 113 (44.8 bits), Expect = 4.4e-05, P = 4.4e-05
 Identities = 25/79 (31%), Positives = 46/79 (58%)

Query:    36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
             ++V GLP  +++ ++  +FSQYG I+   ++ D++TG S+G  FI ++ +     ++  L
Sbjct:   155 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGMSRGVGFIRFDKRIEAEEAIKGL 214

Query:    96 NGVKVLSRT--IRVDHVND 112
             NG K  + T  I V   N+
Sbjct:   215 NGQKPPAATEPITVKFANN 233

 Score = 107 (42.7 bits), Expect = 0.00039, P = 0.00039
 Identities = 23/76 (30%), Positives = 41/76 (53%)

Query:    33 SAW-IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLS 91
             + W IFV  L  D  E  +  +F  +G + N+ ++RD  T K KGF F+   +     ++
Sbjct:   303 TGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMA 362

Query:    92 VDNLNGVKVLSRTIRV 107
             + +LNG ++  R ++V
Sbjct:   363 IASLNGYRLGDRVLQV 378


>UNIPROTKB|G3N063 [details] [associations]
            symbol:ELAVL2 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
            Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
            GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:DAAA02022184
            EMBL:DAAA02022185 Ensembl:ENSBTAT00000065940 Uniprot:G3N063
        Length = 388

 Score = 140 (54.3 bits), Expect = 6.4e-09, P = 6.4e-09
 Identities = 26/74 (35%), Positives = 49/74 (66%)

Query:    36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
             + V  LP ++++ ++  +F   GEI +  LVRDKITG+S G+ F+ Y D +    +++ L
Sbjct:    70 LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 129

Query:    96 NGVKVLSRTIRVDH 109
             NG+++ ++TI+V +
Sbjct:   130 NGLRLQTKTIKVSY 143

 Score = 110 (43.8 bits), Expect = 0.00014, P = 0.00014
 Identities = 21/64 (32%), Positives = 40/64 (62%)

Query:    36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
             ++V GLP  +++ ++  +FSQYG I+   ++ D++TG S+G  FI ++ +     ++  L
Sbjct:   156 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 215

Query:    96 NGVK 99
             NG K
Sbjct:   216 NGQK 219

 Score = 109 (43.4 bits), Expect = 0.00021, P = 0.00021
 Identities = 24/80 (30%), Positives = 42/80 (52%)

Query:    33 SAW-IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLS 91
             + W IFV  L  D  E  +  +F  +G + N+ ++RD  T K KGF F+   +     ++
Sbjct:   304 TGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMA 363

Query:    92 VDNLNGVKVLSRTIRVDHVN 111
             + +LNG ++  R ++V   N
Sbjct:   364 IASLNGYRLGDRVLQVFKTN 383


>UNIPROTKB|E2RI94 [details] [associations]
            symbol:ELAVL2 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
            Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
            GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AAEX03007909
            EMBL:AAEX03007910 EMBL:AAEX03007911 EMBL:AAEX03007912
            Ensembl:ENSCAFT00000002645 Uniprot:E2RI94
        Length = 388

 Score = 140 (54.3 bits), Expect = 6.4e-09, P = 6.4e-09
 Identities = 26/74 (35%), Positives = 49/74 (66%)

Query:    36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
             + V  LP ++++ ++  +F   GEI +  LVRDKITG+S G+ F+ Y D +    +++ L
Sbjct:    70 LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 129

Query:    96 NGVKVLSRTIRVDH 109
             NG+++ ++TI+V +
Sbjct:   130 NGLRLQTKTIKVSY 143

 Score = 110 (43.8 bits), Expect = 0.00014, P = 0.00014
 Identities = 21/64 (32%), Positives = 40/64 (62%)

Query:    36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
             ++V GLP  +++ ++  +FSQYG I+   ++ D++TG S+G  FI ++ +     ++  L
Sbjct:   156 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 215

Query:    96 NGVK 99
             NG K
Sbjct:   216 NGQK 219

 Score = 107 (42.7 bits), Expect = 0.00039, P = 0.00039
 Identities = 23/76 (30%), Positives = 41/76 (53%)

Query:    33 SAW-IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLS 91
             + W IFV  L  D  E  +  +F  +G + N+ ++RD  T K KGF F+   +     ++
Sbjct:   303 TGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMA 362

Query:    92 VDNLNGVKVLSRTIRV 107
             + +LNG ++  R ++V
Sbjct:   363 IASLNGYRLGDRVLQV 378


>UNIPROTKB|B4E2X2 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:AC004221 HOVERGEN:HBG107480 EMBL:AC004258 UniGene:Hs.618145
            UniGene:Hs.634522 HGNC:HGNC:1982 HOGENOM:HOG000276232
            OrthoDB:EOG4HHP40 ChiTaRS:CIRBP EMBL:AK304470 IPI:IPI00909097
            SMR:B4E2X2 STRING:B4E2X2 Ensembl:ENST00000413636 UCSC:uc010xgl.1
            Uniprot:B4E2X2
        Length = 263

 Score = 136 (52.9 bits), Expect = 6.7e-09, P = 6.7e-09
 Identities = 29/77 (37%), Positives = 48/77 (62%)

Query:    32 DSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLS 91
             D   +FVGGL +D +E  +  +FS+YG+I  + +V+D+ T +S+GF F+ +E+      +
Sbjct:     4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63

Query:    92 VDNLNGVKVLSRTIRVD 108
             +  +NG  V  R IRVD
Sbjct:    64 MMAMNGKSVDGRQIRVD 80


>UNIPROTKB|F1PVV1 [details] [associations]
            symbol:ELAVL3 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
            Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
            GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:AAEX03012413
            Ensembl:ENSCAFT00000027494 Uniprot:F1PVV1
        Length = 367

 Score = 139 (54.0 bits), Expect = 7.3e-09, P = 7.3e-09
 Identities = 26/74 (35%), Positives = 47/74 (63%)

Query:    36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
             + V  LP ++++ +   +F   G+I +  LVRDKITG+S G+ F+ Y D      +++ L
Sbjct:    41 LIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTL 100

Query:    96 NGVKVLSRTIRVDH 109
             NG+K+ ++TI+V +
Sbjct:   101 NGLKLQTKTIKVSY 114

 Score = 118 (46.6 bits), Expect = 2.9e-06, P = 2.9e-06
 Identities = 34/114 (29%), Positives = 58/114 (50%)

Query:     1 MNPLTNVKNIKKLSEQELSSGSKTSWHDQYKDSAWIFVGGLPYDLSEGDVICIFSQYGEI 60
             +N L  +K   K  +   +  S  S  D     A ++V GLP  +S+ ++  +FSQYG I
Sbjct:    97 INTLNGLKLQTKTIKVSYARPSSASIRD-----ANLYVSGLPKTMSQKEMEQLFSQYGRI 151

Query:    61 VNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVL--SRTIRVDHVND 112
             +   ++ D++TG S+G  FI ++ +     ++  LNG K L  +  I V   N+
Sbjct:   152 ITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANN 205

 Score = 108 (43.1 bits), Expect = 0.00026, P = 0.00026
 Identities = 25/89 (28%), Positives = 46/89 (51%)

Query:    33 SAW-IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLS 91
             + W IFV  L  +  E  +  +F  +G + N+ ++RD  T K KGF F+   +     ++
Sbjct:   282 AGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMA 341

Query:    92 VDNLNGVKVLSRTIRVDHVNDYKPPKDNK 120
             + +LNG ++  R ++V     +K  K +K
Sbjct:   342 IASLNGYRLGERVLQVS----FKTSKQHK 366


>UNIPROTKB|Q14576 [details] [associations]
            symbol:ELAVL3 "ELAV-like protein 3" species:9606 "Homo
            sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0007399
            "nervous system development" evidence=IEA] [GO:0030154 "cell
            differentiation" evidence=IEA] [GO:0017091 "AU-rich element
            binding" evidence=IDA] InterPro:IPR000504 InterPro:IPR002343
            InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
            PROSITE:PS50102 SMART:SM00360 GO:GO:0007399 GO:GO:0030154
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
            HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
            KO:K13208 EMBL:L26405 EMBL:AY036909 EMBL:AC008481 EMBL:BC014144
            EMBL:D26158 IPI:IPI00031552 IPI:IPI00140449 RefSeq:NP_001411.2
            RefSeq:NP_115657.2 UniGene:Hs.1701 ProteinModelPortal:Q14576
            SMR:Q14576 IntAct:Q14576 MINT:MINT-1471958 STRING:Q14576
            PhosphoSite:Q14576 DMDM:21264436 PaxDb:Q14576 PRIDE:Q14576
            Ensembl:ENST00000359227 Ensembl:ENST00000438662 GeneID:1995
            KEGG:hsa:1995 UCSC:uc002mrx.1 UCSC:uc002mry.1 CTD:1995
            GeneCards:GC19M011562 HGNC:HGNC:3314 HPA:CAB013066 MIM:603458
            neXtProt:NX_Q14576 PharmGKB:PA27742 InParanoid:Q14576 OMA:ARRYTGP
            PhylomeDB:Q14576 ChiTaRS:ELAVL3 GenomeRNAi:1995 NextBio:8067
            ArrayExpress:Q14576 Bgee:Q14576 CleanEx:HS_ELAVL3
            Genevestigator:Q14576 GermOnline:ENSG00000196361 Uniprot:Q14576
        Length = 367

 Score = 139 (54.0 bits), Expect = 7.3e-09, P = 7.3e-09
 Identities = 26/74 (35%), Positives = 47/74 (63%)

Query:    36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
             + V  LP ++++ +   +F   G+I +  LVRDKITG+S G+ F+ Y D      +++ L
Sbjct:    41 LIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTL 100

Query:    96 NGVKVLSRTIRVDH 109
             NG+K+ ++TI+V +
Sbjct:   101 NGLKLQTKTIKVSY 114

 Score = 118 (46.6 bits), Expect = 2.9e-06, P = 2.9e-06
 Identities = 34/114 (29%), Positives = 58/114 (50%)

Query:     1 MNPLTNVKNIKKLSEQELSSGSKTSWHDQYKDSAWIFVGGLPYDLSEGDVICIFSQYGEI 60
             +N L  +K   K  +   +  S  S  D     A ++V GLP  +S+ ++  +FSQYG I
Sbjct:    97 INTLNGLKLQTKTIKVSYARPSSASIRD-----ANLYVSGLPKTMSQKEMEQLFSQYGRI 151

Query:    61 VNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVL--SRTIRVDHVND 112
             +   ++ D++TG S+G  FI ++ +     ++  LNG K L  +  I V   N+
Sbjct:   152 ITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANN 205

 Score = 108 (43.1 bits), Expect = 0.00026, P = 0.00026
 Identities = 25/89 (28%), Positives = 46/89 (51%)

Query:    33 SAW-IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLS 91
             + W IFV  L  +  E  +  +F  +G + N+ ++RD  T K KGF F+   +     ++
Sbjct:   282 AGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMA 341

Query:    92 VDNLNGVKVLSRTIRVDHVNDYKPPKDNK 120
             + +LNG ++  R ++V     +K  K +K
Sbjct:   342 IASLNGYRLGERVLQVS----FKTSKQHK 366


>UNIPROTKB|F1SA16 [details] [associations]
            symbol:ELAVL3 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0017091 "AU-rich element binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
            Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 TIGRFAMs:TIGR01661
            GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:CU855518
            Ensembl:ENSSSCT00000014872 Uniprot:F1SA16
        Length = 367

 Score = 139 (54.0 bits), Expect = 7.3e-09, P = 7.3e-09
 Identities = 26/74 (35%), Positives = 47/74 (63%)

Query:    36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
             + V  LP ++++ +   +F   G+I +  LVRDKITG+S G+ F+ Y D      +++ L
Sbjct:    41 LIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTL 100

Query:    96 NGVKVLSRTIRVDH 109
             NG+K+ ++TI+V +
Sbjct:   101 NGLKLQTKTIKVSY 114

 Score = 118 (46.6 bits), Expect = 2.9e-06, P = 2.9e-06
 Identities = 34/114 (29%), Positives = 58/114 (50%)

Query:     1 MNPLTNVKNIKKLSEQELSSGSKTSWHDQYKDSAWIFVGGLPYDLSEGDVICIFSQYGEI 60
             +N L  +K   K  +   +  S  S  D     A ++V GLP  +S+ ++  +FSQYG I
Sbjct:    97 INTLNGLKLQTKTIKVSYARPSSASIRD-----ANLYVSGLPKTMSQKEMEQLFSQYGRI 151

Query:    61 VNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVL--SRTIRVDHVND 112
             +   ++ D++TG S+G  FI ++ +     ++  LNG K L  +  I V   N+
Sbjct:   152 ITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANN 205

 Score = 107 (42.7 bits), Expect = 0.00036, P = 0.00036
 Identities = 25/87 (28%), Positives = 45/87 (51%)

Query:    35 W-IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVD 93
             W IFV  L  +  E  +  +F  +G + N+ ++RD  T K KGF F+   +     +++ 
Sbjct:   284 WCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIA 343

Query:    94 NLNGVKVLSRTIRVDHVNDYKPPKDNK 120
             +LNG ++  R ++V     +K  K +K
Sbjct:   344 SLNGYRLGERVLQVS----FKTSKQHK 366


>MGI|MGI:109157 [details] [associations]
            symbol:Elavl3 "ELAV (embryonic lethal, abnormal vision,
            Drosophila)-like 3 (Hu antigen C)" species:10090 "Mus musculus"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0007275 "multicellular organismal development" evidence=IEA]
            [GO:0007399 "nervous system development" evidence=IEA] [GO:0017091
            "AU-rich element binding" evidence=ISO;IDA] [GO:0030154 "cell
            differentiation" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
            Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
            MGI:MGI:109157 GO:GO:0007399 GO:GO:0030154 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
            HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
            GeneTree:ENSGT00560000077064 KO:K13208 CTD:1995 OMA:ARRYTGP
            ChiTaRS:ELAVL3 EMBL:U29148 EMBL:U29149 EMBL:BC052097
            IPI:IPI00122451 IPI:IPI00222990 RefSeq:NP_034617.1
            UniGene:Mm.390167 PDB:1D8Z PDB:1D9A PDB:1FNX PDBsum:1D8Z
            PDBsum:1D9A PDBsum:1FNX ProteinModelPortal:Q60900 SMR:Q60900
            STRING:Q60900 PhosphoSite:Q60900 PaxDb:Q60900 PRIDE:Q60900
            Ensembl:ENSMUST00000003501 GeneID:15571 KEGG:mmu:15571
            UCSC:uc009onl.2 UCSC:uc009onn.1 InParanoid:Q60900 OrthoDB:EOG43R3N0
            EvolutionaryTrace:Q60900 NextBio:288556 Bgee:Q60900
            Genevestigator:Q60900 GermOnline:ENSMUSG00000003410 Uniprot:Q60900
        Length = 367

 Score = 139 (54.0 bits), Expect = 7.3e-09, P = 7.3e-09
 Identities = 26/74 (35%), Positives = 47/74 (63%)

Query:    36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
             + V  LP ++++ +   +F   G+I +  LVRDKITG+S G+ F+ Y D      +++ L
Sbjct:    41 LIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTL 100

Query:    96 NGVKVLSRTIRVDH 109
             NG+K+ ++TI+V +
Sbjct:   101 NGLKLQTKTIKVSY 114

 Score = 115 (45.5 bits), Expect = 1.8e-05, P = 1.8e-05
 Identities = 34/114 (29%), Positives = 57/114 (50%)

Query:     1 MNPLTNVKNIKKLSEQELSSGSKTSWHDQYKDSAWIFVGGLPYDLSEGDVICIFSQYGEI 60
             +N L  +K   K  +   +  S  S  D     A ++V GLP  +S+ ++  +FSQYG I
Sbjct:    97 INTLNGLKLQTKTIKVSYARPSSASIRD-----ANLYVSGLPKTMSQKEMEQLFSQYGRI 151

Query:    61 VNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVL--SRTIRVDHVND 112
             +   ++ D+ TG S+G  FI ++ +     ++  LNG K L  +  I V   N+
Sbjct:   152 ITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANN 205

 Score = 108 (43.1 bits), Expect = 0.00026, P = 0.00026
 Identities = 25/89 (28%), Positives = 46/89 (51%)

Query:    33 SAW-IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLS 91
             + W IFV  L  +  E  +  +F  +G + N+ ++RD  T K KGF F+   +     ++
Sbjct:   282 AGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMA 341

Query:    92 VDNLNGVKVLSRTIRVDHVNDYKPPKDNK 120
             + +LNG ++  R ++V     +K  K +K
Sbjct:   342 IASLNGYRLGERVLQVS----FKTSKQHK 366


>RGD|628892 [details] [associations]
            symbol:Elavl3 "ELAV (embryonic lethal, abnormal vision,
            Drosophila)-like 3 (Hu antigen C)" species:10116 "Rattus
            norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0017091 "AU-rich element binding" evidence=IEA;ISO]
            InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
            SMART:SM00360 RGD:628892 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0017091 HSSP:P19339 eggNOG:COG0724 EMBL:CH473993
            HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
            GeneTree:ENSGT00560000077064 KO:K13208 CTD:1995 OrthoDB:EOG43R3N0
            EMBL:AB097198 IPI:IPI00192527 RefSeq:NP_758827.1 UniGene:Rn.22586
            SMR:Q76IJ9 STRING:Q76IJ9 Ensembl:ENSRNOT00000018416 GeneID:282824
            KEGG:rno:282824 UCSC:RGD:628892 InParanoid:Q76IJ9 NextBio:624869
            Genevestigator:Q76IJ9 Uniprot:Q76IJ9
        Length = 367

 Score = 139 (54.0 bits), Expect = 7.3e-09, P = 7.3e-09
 Identities = 26/74 (35%), Positives = 47/74 (63%)

Query:    36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
             + V  LP ++++ +   +F   G+I +  LVRDKITG+S G+ F+ Y D      +++ L
Sbjct:    41 LIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTL 100

Query:    96 NGVKVLSRTIRVDH 109
             NG+K+ ++TI+V +
Sbjct:   101 NGLKLQTKTIKVSY 114

 Score = 115 (45.5 bits), Expect = 1.8e-05, P = 1.8e-05
 Identities = 34/114 (29%), Positives = 57/114 (50%)

Query:     1 MNPLTNVKNIKKLSEQELSSGSKTSWHDQYKDSAWIFVGGLPYDLSEGDVICIFSQYGEI 60
             +N L  +K   K  +   +  S  S  D     A ++V GLP  +S+ ++  +FSQYG I
Sbjct:    97 INTLNGLKLQTKTIKVSYARPSSASIRD-----ANLYVSGLPKTMSQKEMEQLFSQYGRI 151

Query:    61 VNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVL--SRTIRVDHVND 112
             +   ++ D+ TG S+G  FI ++ +     ++  LNG K L  +  I V   N+
Sbjct:   152 ITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANN 205

 Score = 108 (43.1 bits), Expect = 0.00026, P = 0.00026
 Identities = 25/89 (28%), Positives = 46/89 (51%)

Query:    33 SAW-IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLS 91
             + W IFV  L  +  E  +  +F  +G + N+ ++RD  T K KGF F+   +     ++
Sbjct:   282 AGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMA 341

Query:    92 VDNLNGVKVLSRTIRVDHVNDYKPPKDNK 120
             + +LNG ++  R ++V     +K  K +K
Sbjct:   342 IASLNGYRLGERVLQVS----FKTSKQHK 366


>UNIPROTKB|F1N4V6 [details] [associations]
            symbol:ELAVL3 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
            Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 TIGRFAMs:TIGR01661
            GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:DAAA02019487
            IPI:IPI00710891 Ensembl:ENSBTAT00000019169 Uniprot:F1N4V6
        Length = 368

 Score = 139 (54.0 bits), Expect = 7.4e-09, P = 7.4e-09
 Identities = 26/74 (35%), Positives = 47/74 (63%)

Query:    36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
             + V  LP ++++ +   +F   G+I +  LVRDKITG+S G+ F+ Y D      +++ L
Sbjct:    41 LIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTL 100

Query:    96 NGVKVLSRTIRVDH 109
             NG+K+ ++TI+V +
Sbjct:   101 NGLKLQTKTIKVSY 114

 Score = 118 (46.6 bits), Expect = 2.9e-06, P = 2.9e-06
 Identities = 34/114 (29%), Positives = 58/114 (50%)

Query:     1 MNPLTNVKNIKKLSEQELSSGSKTSWHDQYKDSAWIFVGGLPYDLSEGDVICIFSQYGEI 60
             +N L  +K   K  +   +  S  S  D     A ++V GLP  +S+ ++  +FSQYG I
Sbjct:    97 INTLNGLKLQTKTIKVSYARPSSASIRD-----ANLYVSGLPKTMSQKEMEQLFSQYGRI 151

Query:    61 VNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVL--SRTIRVDHVND 112
             +   ++ D++TG S+G  FI ++ +     ++  LNG K L  +  I V   N+
Sbjct:   152 ITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANN 205

 Score = 108 (43.1 bits), Expect = 0.00026, P = 0.00026
 Identities = 25/89 (28%), Positives = 46/89 (51%)

Query:    33 SAW-IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLS 91
             + W IFV  L  +  E  +  +F  +G + N+ ++RD  T K KGF F+   +     ++
Sbjct:   283 AGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMA 342

Query:    92 VDNLNGVKVLSRTIRVDHVNDYKPPKDNK 120
             + +LNG ++  R ++V     +K  K +K
Sbjct:   343 IASLNGYRLGERVLQVS----FKTSKQHK 367


>UNIPROTKB|D6W5Y5 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:CH471139 EMBL:AC004221 EMBL:AC004258 IPI:IPI00641579
            UniGene:Hs.618145 UniGene:Hs.634522 HGNC:HGNC:1982
            HOGENOM:HOG000276232 ChiTaRS:CIRBP ProteinModelPortal:D6W5Y5
            PRIDE:D6W5Y5 Ensembl:ENST00000587323 Ensembl:ENST00000587896
            Ensembl:ENST00000588230 Ensembl:ENST00000589710 ArrayExpress:D6W5Y5
            Bgee:D6W5Y5 Uniprot:D6W5Y5
        Length = 297

 Score = 137 (53.3 bits), Expect = 7.5e-09, P = 7.5e-09
 Identities = 30/90 (33%), Positives = 50/90 (55%)

Query:    32 DSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLS 91
             D   +FVGGL +D +E  +  +FS+YG+I  + +V+D+ T +S+GF F+ +E+      +
Sbjct:     4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63

Query:    92 VDNLNGVKVLSRTIRVDHVNDYKPPKDNKY 121
             +  +NG  V  R IRVD        +   Y
Sbjct:    64 MMAMNGKSVDGRQIRVDQAGKSSDNRSRGY 93


>FB|FBgn0033378 [details] [associations]
            symbol:tsu "tsunagi" species:7227 "Drosophila melanogaster"
            [GO:0003729 "mRNA binding" evidence=ISS;NAS] [GO:0007310 "oocyte
            dorsal/ventral axis specification" evidence=IMP] [GO:0007314
            "oocyte anterior/posterior axis specification" evidence=IMP]
            [GO:0005737 "cytoplasm" evidence=IDA] [GO:0000226 "microtubule
            cytoskeleton organization" evidence=IMP] [GO:0007312 "oocyte
            nucleus migration involved in oocyte dorsal/ventral axis
            specification" evidence=IMP] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0007317 "regulation of pole plasm oskar mRNA localization"
            evidence=IMP;IPI] [GO:0006406 "mRNA export from nucleus"
            evidence=NAS] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0045451 "pole plasm oskar mRNA localization" evidence=TAS]
            [GO:0046595 "establishment of pole plasm mRNA localization"
            evidence=TAS] [GO:0006396 "RNA processing" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0007294
            "germarium-derived oocyte fate determination" evidence=IMP]
            [GO:0000398 "mRNA splicing, via spliceosome" evidence=IC]
            [GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
            [GO:0035145 "exon-exon junction complex" evidence=IPI] [GO:0007173
            "epidermal growth factor receptor signaling pathway" evidence=IMP]
            InterPro:IPR000504 InterPro:IPR008111 InterPro:IPR012677
            Pfam:PF00076 PRINTS:PR01738 PROSITE:PS50102 SMART:SM00360
            EMBL:AE013599 GO:GO:0005737 GO:GO:0007173 GO:GO:0000226
            GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0006406
            GO:GO:0000398 GO:GO:0071013 GO:GO:0007312 eggNOG:COG0724
            GO:GO:0045451 GO:GO:0035145 GO:GO:0007317
            GeneTree:ENSGT00550000074641 PDB:1HL6 PDB:1OO0 PDB:1RK8 PDB:2X1G
            PDBsum:1HL6 PDBsum:1OO0 PDBsum:1RK8 PDBsum:2X1G KO:K12876
            OMA:WILFVTS EMBL:AF173550 EMBL:AY071005 RefSeq:NP_610454.2
            UniGene:Dm.19884 ProteinModelPortal:Q9V535 SMR:Q9V535
            DIP:DIP-24075N IntAct:Q9V535 MINT:MINT-816263 STRING:Q9V535
            PaxDb:Q9V535 PRIDE:Q9V535 EnsemblMetazoa:FBtr0088567 GeneID:35924
            KEGG:dme:Dmel_CG8781 UCSC:CG8781-RA CTD:110124 FlyBase:FBgn0033378
            InParanoid:Q9V535 OrthoDB:EOG4N02X6 PhylomeDB:Q9V535
            EvolutionaryTrace:Q9V535 GenomeRNAi:35924 NextBio:795852
            Bgee:Q9V535 GermOnline:CG8781 GO:GO:0046595 Uniprot:Q9V535
        Length = 165

 Score = 132 (51.5 bits), Expect = 7.6e-09, P = 7.6e-09
 Identities = 31/94 (32%), Positives = 53/94 (56%)

Query:    35 WI-FVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVD 93
             WI FV  +  +  E ++   F  YGEI N++L  D+ TG SKG+  + YE  +  + + +
Sbjct:    73 WILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKE 132

Query:    94 NLNGVKVLSRTIRVDHVNDYKPPKDNKYTDEETK 127
              LNG +++ +TI+VD     K PK  K +++  +
Sbjct:   133 ALNGAEIMGQTIQVDWCF-VKGPKRVKKSEKRRR 165


>UNIPROTKB|H9KZV5 [details] [associations]
            symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003730
            "mRNA 3'-UTR binding" evidence=IEA] [GO:0009411 "response to UV"
            evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
            evidence=IEA] [GO:0030371 "translation repressor activity"
            evidence=IEA] [GO:0034063 "stress granule assembly" evidence=IEA]
            [GO:0045727 "positive regulation of translation" evidence=IEA]
            [GO:0048255 "mRNA stabilization" evidence=IEA] [GO:0070181 "SSU
            rRNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 OMA:ENRSRGY
            GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
            Ensembl:ENSGALT00000019966 Uniprot:H9KZV5
        Length = 190

 Score = 132 (51.5 bits), Expect = 7.6e-09, P = 7.6e-09
 Identities = 30/95 (31%), Positives = 50/95 (52%)

Query:    32 DSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLS 91
             D   + VGGL +D +E  +  +FS+YG+I  + +V+D+ T +S+GF F+ +E+      +
Sbjct:     4 DEGKLLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63

Query:    92 VDNLNGVKVLSRTIRVDHVNDYKPPKDNKYTDEET 126
             +  +NG  V  R IRVD        +   Y    T
Sbjct:    64 MMAMNGKSVDGRQIRVDQAGKSSENRSRGYRGGST 98


>UNIPROTKB|H9L0U4 [details] [associations]
            symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
            Ensembl:ENSGALT00000029134 Uniprot:H9L0U4
        Length = 167

 Score = 132 (51.5 bits), Expect = 7.6e-09, P = 7.6e-09
 Identities = 30/95 (31%), Positives = 50/95 (52%)

Query:    32 DSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLS 91
             D   + VGGL +D +E  +  +FS+YG+I  + +V+D+ T +S+GF F+ +E+      +
Sbjct:     4 DEGKLLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63

Query:    92 VDNLNGVKVLSRTIRVDHVNDYKPPKDNKYTDEET 126
             +  +NG  V  R IRVD        +   Y    T
Sbjct:    64 MMAMNGKSVDGRQIRVDQAGKSSENRSRGYRGGST 98


>UNIPROTKB|H9L3B3 [details] [associations]
            symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
            Ensembl:ENSGALT00000036191 Uniprot:H9L3B3
        Length = 172

 Score = 132 (51.5 bits), Expect = 7.6e-09, P = 7.6e-09
 Identities = 30/95 (31%), Positives = 50/95 (52%)

Query:    32 DSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLS 91
             D   + VGGL +D +E  +  +FS+YG+I  + +V+D+ T +S+GF F+ +E+      +
Sbjct:     4 DEGKLLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63

Query:    92 VDNLNGVKVLSRTIRVDHVNDYKPPKDNKYTDEET 126
             +  +NG  V  R IRVD        +   Y    T
Sbjct:    64 MMAMNGKSVDGRQIRVDQAGKSSENRSRGYRGGST 98


>UNIPROTKB|Q3ZCE8 [details] [associations]
            symbol:RBM8A "RNA-binding protein 8A" species:9913 "Bos
            taurus" [GO:0016607 "nuclear speck" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] [GO:0071013 "catalytic step 2
            spliceosome" evidence=IEA] [GO:0035145 "exon-exon junction complex"
            evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
            process, nonsense-mediated decay" evidence=IEA] [GO:0051028 "mRNA
            transport" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
            [GO:0006417 "regulation of translation" evidence=IEA] [GO:0006397
            "mRNA processing" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR008111 InterPro:IPR012677
            Pfam:PF00076 PRINTS:PR01738 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005737 GO:GO:0006417 GO:GO:0000184 GO:GO:0008380
            GO:GO:0000166 GO:GO:0016607 GO:GO:0006397 Gene3D:3.30.70.330
            GO:GO:0003723 GO:GO:0051028 GO:GO:0071013 eggNOG:COG0724
            GO:GO:0035145 GeneTree:ENSGT00550000074641 HSSP:P52298
            EMBL:BT025376 EMBL:BC102484 IPI:IPI00705285 IPI:IPI00939094
            RefSeq:NP_001030401.1 UniGene:Bt.49450 ProteinModelPortal:Q3ZCE8
            SMR:Q3ZCE8 STRING:Q3ZCE8 PRIDE:Q3ZCE8 Ensembl:ENSBTAT00000011016
            GeneID:518045 KEGG:bta:518045 CTD:9939 HOGENOM:HOG000183826
            HOVERGEN:HBG055173 InParanoid:Q3ZCE8 KO:K12876 OMA:WILFVTS
            OrthoDB:EOG42822W NextBio:20872569 Uniprot:Q3ZCE8
        Length = 174

 Score = 132 (51.5 bits), Expect = 7.6e-09, P = 7.6e-09
 Identities = 30/87 (34%), Positives = 49/87 (56%)

Query:    35 WI-FVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVD 93
             WI FV G+  + +E D+   F++YGEI N++L  D+ TG  KG+  + YE  +    +++
Sbjct:    73 WILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAME 132

Query:    94 NLNGVKVLSRTIRVDHVNDYKPPKDNK 120
              LNG  ++ + I VD      PPK  +
Sbjct:   133 GLNGQDLMGQPISVDWCFVRGPPKGKR 159


>UNIPROTKB|E2QV85 [details] [associations]
            symbol:RBM8A "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
            evidence=IEA] [GO:0035145 "exon-exon junction complex"
            evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
            process, nonsense-mediated decay" evidence=IEA] [GO:0006396 "RNA
            processing" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR008111
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR01738 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005737 GO:GO:0000184 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396 GO:GO:0071013
            GO:GO:0035145 ProteinModelPortal:E2QV85 Ensembl:ENSCAFT00000017835
            Uniprot:E2QV85
        Length = 177

 Score = 132 (51.5 bits), Expect = 7.6e-09, P = 7.6e-09
 Identities = 30/87 (34%), Positives = 49/87 (56%)

Query:    35 WI-FVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVD 93
             WI FV G+  + +E D+   F++YGEI N++L  D+ TG  KG+  + YE  +    +++
Sbjct:    76 WILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAME 135

Query:    94 NLNGVKVLSRTIRVDHVNDYKPPKDNK 120
              LNG  ++ + I VD      PPK  +
Sbjct:   136 GLNGQDLMGQPISVDWCFVRGPPKGKR 162


>UNIPROTKB|F6XAE9 [details] [associations]
            symbol:RBM8A "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0006396 "RNA processing" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR008111 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR01738
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396
            GeneTree:ENSGT00550000074641 CTD:9939 KO:K12876 OMA:WILFVTS
            Ensembl:ENSCAFT00000017835 EMBL:AAEX03011037 RefSeq:XP_533035.1
            ProteinModelPortal:F6XAE9 GeneID:475827 KEGG:cfa:475827
            Uniprot:F6XAE9
        Length = 174

 Score = 132 (51.5 bits), Expect = 7.6e-09, P = 7.6e-09
 Identities = 30/87 (34%), Positives = 49/87 (56%)

Query:    35 WI-FVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVD 93
             WI FV G+  + +E D+   F++YGEI N++L  D+ TG  KG+  + YE  +    +++
Sbjct:    73 WILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAME 132

Query:    94 NLNGVKVLSRTIRVDHVNDYKPPKDNK 120
              LNG  ++ + I VD      PPK  +
Sbjct:   133 GLNGQDLMGQPISVDWCFVRGPPKGKR 159


>UNIPROTKB|Q9Y5S9 [details] [associations]
            symbol:RBM8A "RNA-binding protein 8A" species:9606 "Homo
            sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006417
            "regulation of translation" evidence=IEA] [GO:0016607 "nuclear
            speck" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA;NAS]
            [GO:0005737 "cytoplasm" evidence=NAS] [GO:0003729 "mRNA binding"
            evidence=NAS] [GO:0003723 "RNA binding" evidence=NAS] [GO:0005515
            "protein binding" evidence=IPI] [GO:0035145 "exon-exon junction
            complex" evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
            evidence=IC;TAS] [GO:0071013 "catalytic step 2 spliceosome"
            evidence=IDA] [GO:0000184 "nuclear-transcribed mRNA catabolic
            process, nonsense-mediated decay" evidence=IMP;TAS] [GO:0005654
            "nucleoplasm" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
            [GO:0006366 "transcription from RNA polymerase II promoter"
            evidence=TAS] [GO:0006369 "termination of RNA polymerase II
            transcription" evidence=TAS] [GO:0006406 "mRNA export from nucleus"
            evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
            "gene expression" evidence=TAS] [GO:0016070 "RNA metabolic process"
            evidence=TAS] [GO:0016071 "mRNA metabolic process" evidence=TAS]
            [GO:0031124 "mRNA 3'-end processing" evidence=TAS] [GO:0005730
            "nucleolus" evidence=IDA] Reactome:REACT_71 Reactome:REACT_21257
            InterPro:IPR000504 InterPro:IPR008111 InterPro:IPR012677
            Pfam:PF00076 PRINTS:PR01738 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005829 GO:GO:0005654 GO:GO:0006417 GO:GO:0000184
            GO:GO:0000166 GO:GO:0016607 Reactome:REACT_1675 GO:GO:0003729
            Gene3D:3.30.70.330 TCDB:3.A.18.1.1 GO:GO:0006406 EMBL:AL160282
            GO:GO:0000398 GO:GO:0071013 Reactome:REACT_1788 eggNOG:COG0724
            GO:GO:0035145 PDB:2HYI PDB:2J0Q PDB:2J0S PDB:2XB2 PDB:3EX7
            PDBsum:2HYI PDBsum:2J0Q PDBsum:2J0S PDBsum:2XB2 PDBsum:3EX7
            GO:GO:0006369 GO:GO:0031124 Reactome:REACT_78 EMBL:CH471244
            PDB:1P27 PDBsum:1P27 CTD:9939 HOGENOM:HOG000183826
            HOVERGEN:HBG055173 KO:K12876 OMA:WILFVTS OrthoDB:EOG42822W
            EMBL:AF127761 EMBL:AF198620 EMBL:AF231511 EMBL:AF231512
            EMBL:AF299118 EMBL:AF403012 EMBL:AF182415 EMBL:AF161463
            EMBL:CR541823 EMBL:CR541805 EMBL:AK075009 EMBL:BC017088
            IPI:IPI00001757 IPI:IPI00216659 RefSeq:NP_005096.1
            RefSeq:XP_003960226.1 UniGene:Hs.591455 ProteinModelPortal:Q9Y5S9
            SMR:Q9Y5S9 DIP:DIP-33070N IntAct:Q9Y5S9 MINT:MINT-265248
            STRING:Q9Y5S9 PhosphoSite:Q9Y5S9 DMDM:10720244 PaxDb:Q9Y5S9
            PRIDE:Q9Y5S9 DNASU:9939 Ensembl:ENST00000330165
            Ensembl:ENST00000369307 Ensembl:ENST00000578414
            Ensembl:ENST00000583313 GeneID:101060541 GeneID:9939
            KEGG:hsa:101060541 KEGG:hsa:9939 UCSC:uc001ent.2 UCSC:uc001enu.2
            GeneCards:GC01P145507 HGNC:HGNC:9905 HPA:CAB012803 HPA:HPA018403
            MIM:605313 neXtProt:NX_Q9Y5S9 Orphanet:3320 PharmGKB:PA34270
            InParanoid:Q9Y5S9 PhylomeDB:Q9Y5S9 ChiTaRS:RBM8A
            EvolutionaryTrace:Q9Y5S9 GenomeRNAi:9939 NextBio:37498
            PMAP-CutDB:Q9Y5S9 Bgee:Q9Y5S9 CleanEx:HS_RBM8A
            Genevestigator:Q9Y5S9 GermOnline:ENSG00000131795 Uniprot:Q9Y5S9
        Length = 174

 Score = 132 (51.5 bits), Expect = 7.6e-09, P = 7.6e-09
 Identities = 30/87 (34%), Positives = 49/87 (56%)

Query:    35 WI-FVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVD 93
             WI FV G+  + +E D+   F++YGEI N++L  D+ TG  KG+  + YE  +    +++
Sbjct:    73 WILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAME 132

Query:    94 NLNGVKVLSRTIRVDHVNDYKPPKDNK 120
              LNG  ++ + I VD      PPK  +
Sbjct:   133 GLNGQDLMGQPISVDWCFVRGPPKGKR 159


>UNIPROTKB|I3LI59 [details] [associations]
            symbol:RBM8A "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
            [GO:0035145 "exon-exon junction complex" evidence=IEA] [GO:0000184
            "nuclear-transcribed mRNA catabolic process, nonsense-mediated
            decay" evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR008111 InterPro:IPR012677
            Pfam:PF00076 PRINTS:PR01738 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005737 GO:GO:0000184 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 GO:GO:0006396 GO:GO:0071013 GO:GO:0035145
            GeneTree:ENSGT00550000074641 OMA:WILFVTS EMBL:CU606940
            Ensembl:ENSSSCT00000022923 Uniprot:I3LI59
        Length = 177

 Score = 132 (51.5 bits), Expect = 7.6e-09, P = 7.6e-09
 Identities = 30/87 (34%), Positives = 49/87 (56%)

Query:    35 WI-FVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVD 93
             WI FV G+  + +E D+   F++YGEI N++L  D+ TG  KG+  + YE  +    +++
Sbjct:    76 WILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAME 135

Query:    94 NLNGVKVLSRTIRVDHVNDYKPPKDNK 120
              LNG  ++ + I VD      PPK  +
Sbjct:   136 GLNGQDLMGQPISVDWCFVRGPPKGKR 162


>UNIPROTKB|Q28IQ9 [details] [associations]
            symbol:cirbp "Cold-inducible RNA-binding protein"
            species:8364 "Xenopus (Silurana) tropicalis" [GO:0003729 "mRNA
            binding" evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding"
            evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
            "cytoplasm" evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS]
            [GO:0009409 "response to cold" evidence=ISS] [GO:0009790 "embryo
            development" evidence=ISS] [GO:0016477 "cell migration"
            evidence=ISS] [GO:0019899 "enzyme binding" evidence=ISS]
            [GO:0022008 "neurogenesis" evidence=ISS] [GO:0045727 "positive
            regulation of translation" evidence=ISS] [GO:0048255 "mRNA
            stabilization" evidence=ISS] [GO:0048793 "pronephros development"
            evidence=ISS] [GO:0060212 "negative regulation of
            nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
            [GO:0005840 "ribosome" evidence=ISS] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0005737 GO:GO:0005654 GO:GO:0016477
            GO:GO:0022008 GO:GO:0000166 GO:GO:0009409 Gene3D:3.30.70.330
            GO:GO:0019899 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
            GO:GO:0007369 eggNOG:COG0724 GO:GO:0048793 HOVERGEN:HBG107480
            GO:GO:0060212 KO:K13195 CTD:1153 HOGENOM:HOG000276232 EMBL:CR760272
            RefSeq:NP_001017228.1 UniGene:Str.47654 ProteinModelPortal:Q28IQ9
            SMR:Q28IQ9 STRING:Q28IQ9 GeneID:549982 KEGG:xtr:549982
            Xenbase:XB-GENE-492781 Uniprot:Q28IQ9
        Length = 166

 Score = 132 (51.5 bits), Expect = 7.6e-09, P = 7.6e-09
 Identities = 26/77 (33%), Positives = 48/77 (62%)

Query:    32 DSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLS 91
             D   +FVGGL ++ +E  +  +FS+YG++  + +V+D+ + +S+GF F+ +E+      +
Sbjct:     4 DEGKLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDA 63

Query:    92 VDNLNGVKVLSRTIRVD 108
             +  +NG  V  R IRVD
Sbjct:    64 MMAMNGKSVDGRQIRVD 80


>RGD|1310099 [details] [associations]
            symbol:Rbm8a "RNA binding motif protein 8A" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0000184 "nuclear-transcribed mRNA catabolic process,
            nonsense-mediated decay" evidence=IEA;ISO] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISO]
            [GO:0005634 "nucleus" evidence=ISO] [GO:0005737 "cytoplasm"
            evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0006417 "regulation of translation" evidence=IEA] [GO:0008380
            "RNA splicing" evidence=IEA] [GO:0016607 "nuclear speck"
            evidence=IEA] [GO:0035145 "exon-exon junction complex"
            evidence=IEA;ISO] [GO:0051028 "mRNA transport" evidence=IEA]
            [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA;ISO]
            [GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000504
            InterPro:IPR008111 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR01738
            PROSITE:PS50102 SMART:SM00360 RGD:1310099 GO:GO:0005737
            GO:GO:0006417 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166
            GO:GO:0016607 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
            GO:GO:0051028 GO:GO:0071013 eggNOG:COG0724 GO:GO:0035145
            GeneTree:ENSGT00550000074641 CTD:9939 HOGENOM:HOG000183826
            KO:K12876 OMA:WILFVTS OrthoDB:EOG42822W EMBL:DQ359102
            IPI:IPI00210002 RefSeq:NP_001258067.1 RefSeq:XP_001059872.1
            UniGene:Rn.37716 ProteinModelPortal:Q27W01 SMR:Q27W01 STRING:Q27W01
            PhosphoSite:Q27W01 PRIDE:Q27W01 Ensembl:ENSRNOT00000028807
            GeneID:295284 KEGG:rno:295284 UCSC:RGD:1310099 InParanoid:Q27W01
            NextBio:639304 Genevestigator:Q27W01 Uniprot:Q27W01
        Length = 174

 Score = 132 (51.5 bits), Expect = 7.6e-09, P = 7.6e-09
 Identities = 30/87 (34%), Positives = 49/87 (56%)

Query:    35 WI-FVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVD 93
             WI FV G+  + +E D+   F++YGEI N++L  D+ TG  KG+  + YE  +    +++
Sbjct:    73 WILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAME 132

Query:    94 NLNGVKVLSRTIRVDHVNDYKPPKDNK 120
              LNG  ++ + I VD      PPK  +
Sbjct:   133 GLNGQDLMGQPISVDWCFVRGPPKGKR 159


>TAIR|locus:2049359 [details] [associations]
            symbol:GRP7 "AT2G21660" species:3702 "Arabidopsis
            thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005739
            "mitochondrion" evidence=ISM] [GO:0005634 "nucleus"
            evidence=ISS;IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0003690
            "double-stranded DNA binding" evidence=IDA] [GO:0003697
            "single-stranded DNA binding" evidence=IDA] [GO:0009409 "response
            to cold" evidence=IGI;IEP] [GO:0009414 "response to water
            deprivation" evidence=IEP] [GO:0009651 "response to salt stress"
            evidence=IEP;RCA] [GO:0046686 "response to cadmium ion"
            evidence=IEP;RCA] [GO:0010501 "RNA secondary structure unwinding"
            evidence=IDA] [GO:0032508 "DNA duplex unwinding" evidence=IDA]
            [GO:0045087 "innate immune response" evidence=IMP;IDA] [GO:0005777
            "peroxisome" evidence=IDA] [GO:0006406 "mRNA export from nucleus"
            evidence=IMP] [GO:0006970 "response to osmotic stress"
            evidence=IMP] [GO:0010119 "regulation of stomatal movement"
            evidence=IMP] [GO:0009507 "chloroplast" evidence=IDA] [GO:0010228
            "vegetative to reproductive phase transition of meristem"
            evidence=RCA;IMP] [GO:0010043 "response to zinc ion" evidence=IEP]
            [GO:0005829 "cytosol" evidence=IDA] [GO:0009506 "plasmodesma"
            evidence=IDA] [GO:0048046 "apoplast" evidence=IDA] [GO:0006094
            "gluconeogenesis" evidence=RCA] [GO:0006096 "glycolysis"
            evidence=RCA] [GO:0006833 "water transport" evidence=RCA]
            [GO:0006972 "hyperosmotic response" evidence=RCA] [GO:0007030
            "Golgi organization" evidence=RCA] [GO:0007623 "circadian rhythm"
            evidence=IEP;RCA;TAS] [GO:0009266 "response to temperature
            stimulus" evidence=RCA] [GO:0000380 "alternative mRNA splicing, via
            spliceosome" evidence=IMP] [GO:0003729 "mRNA binding" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005829 GO:GO:0009506 GO:GO:0005634
            GO:GO:0009507 GO:GO:0046686 EMBL:CP002685 GenomeReviews:CT485783_GR
            GO:GO:0005777 GO:GO:0010119 GO:GO:0000166 GO:GO:0010043
            GO:GO:0048046 GO:GO:0007623 GO:GO:0009651 GO:GO:0009409
            GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0003690
            GO:GO:0003697 GO:GO:0006406 GO:GO:0010228 eggNOG:COG0724
            GO:GO:0000380 HOGENOM:HOG000276232 GO:GO:0010501 GO:GO:0032508
            EMBL:AC007119 UniGene:At.22672 UniGene:At.23628 EMBL:Z14987
            EMBL:L00648 EMBL:L04172 EMBL:AF428381 EMBL:AY054284 EMBL:AY042826
            EMBL:AY072523 EMBL:AK318968 EMBL:AY085214 IPI:IPI00523161
            IPI:IPI00542675 PIR:S30147 RefSeq:NP_179760.1 UniGene:At.24279
            UniGene:At.72988 ProteinModelPortal:Q03250 SMR:Q03250 IntAct:Q03250
            MINT:MINT-1163877 STRING:Q03250 PaxDb:Q03250 PRIDE:Q03250
            ProMEX:Q03250 EnsemblPlants:AT2G21660.1 GeneID:816705
            KEGG:ath:AT2G21660 TAIR:At2g21660 InParanoid:Q03250 OMA:SQHEDGH
            ProtClustDB:CLSN2913158 Genevestigator:Q03250 Uniprot:Q03250
        Length = 176

 Score = 132 (51.5 bits), Expect = 7.6e-09, P = 7.6e-09
 Identities = 22/72 (30%), Positives = 48/72 (66%)

Query:    37 FVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLN 96
             FVGGL +   +  +   F+QYG++++  ++ D+ TG+S+GF F+ ++D+++   +++ +N
Sbjct:    11 FVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMN 70

Query:    97 GVKVLSRTIRVD 108
             G  +  R+I V+
Sbjct:    71 GQDLDGRSITVN 82


>WB|WBGene00004387 [details] [associations]
            symbol:rnp-4 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006396 "RNA processing"
            evidence=IEA] [GO:0002009 "morphogenesis of an epithelium"
            evidence=IMP] [GO:0009792 "embryo development ending in birth or
            egg hatching" evidence=IMP] [GO:0000003 "reproduction"
            evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
            evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
            "nematode larval development" evidence=IMP] [GO:0040022
            "feminization of hermaphroditic germ-line" evidence=IMP]
            [GO:0009790 "embryo development" evidence=IMP] [GO:0001703
            "gastrulation with mouth forming first" evidence=IMP] [GO:0006898
            "receptor-mediated endocytosis" evidence=IMP] [GO:0040011
            "locomotion" evidence=IMP] [GO:0006915 "apoptotic process"
            evidence=IMP] InterPro:IPR000504 InterPro:IPR008111
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR01738 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0009792 GO:GO:0002009
            GO:GO:0006898 GO:GO:0005737 GO:GO:0040007 GO:GO:0006915
            GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0040011
            GO:GO:0003723 GO:GO:0006396 GO:GO:0040035 GO:GO:0040022 HSSP:Q9V535
            eggNOG:COG0724 GeneTree:ENSGT00550000074641 GO:GO:0001703
            EMBL:Z32683 HOGENOM:HOG000183826 KO:K12876 PIR:F88427
            RefSeq:NP_497891.1 ProteinModelPortal:Q21832 SMR:Q21832
            DIP:DIP-26500N IntAct:Q21832 MINT:MINT-1100537 STRING:Q21832
            PaxDb:Q21832 EnsemblMetazoa:R07E5.14.1 EnsemblMetazoa:R07E5.14.2
            EnsemblMetazoa:R07E5.14.3 GeneID:175572 KEGG:cel:CELE_R07E5.14
            UCSC:R07E5.14.2 CTD:175572 WormBase:R07E5.14 InParanoid:Q21832
            OMA:NIHEEAT NextBio:888726 Uniprot:Q21832
        Length = 142

 Score = 132 (51.5 bits), Expect = 7.6e-09, P = 7.6e-09
 Identities = 33/107 (30%), Positives = 56/107 (52%)

Query:     4 LTNVKNIKKLSEQELSS-GSKTSWHDQYKDSAWI-FVGGLPYDLSEGDVICIFSQYGEIV 61
             L   +N ++++   +    S TS   Q     WI FV  +  + +E DV   FS+YG+I 
Sbjct:    23 LAQSRNRERITYDVVDEESSATSGAPQRSVEGWIVFVTNIHEEATEDDVHDKFSEYGKIK 82

Query:    62 NLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVD 108
             N++L  D+ TG  KG+  + YE Q+    ++D  N   +L + ++VD
Sbjct:    83 NIHLNLDRRTGFLKGYALVEYETQKEANEAIDQSNDTDLLGQNVKVD 129


>ZFIN|ZDB-GENE-040426-1547 [details] [associations]
            symbol:tial1 "TIA1 cytotoxic granule-associated
            RNA binding protein-like 1" species:7955 "Danio rerio" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            ZFIN:ZDB-GENE-040426-1547 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 GeneTree:ENSGT00680000099967 EMBL:BX530079
            IPI:IPI00920337 ProteinModelPortal:E9QJJ0
            Ensembl:ENSDART00000135321 ArrayExpress:E9QJJ0 Bgee:E9QJJ0
            Uniprot:E9QJJ0
        Length = 389

 Score = 139 (54.0 bits), Expect = 8.2e-09, P = 8.2e-09
 Identities = 35/125 (28%), Positives = 65/125 (52%)

Query:     9 NIKKLSEQELSSGSKTSWHDQYKDSA---WIFVGGLPYDLSEGDVICIFSQYGEIVNLNL 65
             N +K+  +E+     T+   Q KD++    +FVG L  +++  D+   F+ +G+I +  +
Sbjct:    87 NGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTDDIRAAFAPFGKISDARV 146

Query:    66 VRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHVNDYKPPKDNKYTDEE 125
             V+D  TGKSKG+ F+ + ++     ++ ++ G  +  R IR +     KPP      D  
Sbjct:   147 VKDMTTGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATR-KPPAPKSVQDNS 205

Query:   126 TKKLR 130
              K+LR
Sbjct:   206 AKQLR 210


>FB|FBgn0000114 [details] [associations]
            symbol:aret "arrest" species:7227 "Drosophila melanogaster"
            [GO:0048477 "oogenesis" evidence=IMP] [GO:0007286 "spermatid
            development" evidence=IMP] [GO:0007319 "negative regulation of
            oskar mRNA translation" evidence=IDA;NAS;TAS] [GO:0003729 "mRNA
            binding" evidence=ISS;NAS;TAS] [GO:0005515 "protein binding"
            evidence=IPI] [GO:0030727 "germarium-derived female germ-line cyst
            formation" evidence=TAS] [GO:0042078 "germ-line stem cell division"
            evidence=NAS] [GO:0046011 "regulation of oskar mRNA translation"
            evidence=TAS] [GO:0006378 "mRNA polyadenylation" evidence=TAS]
            [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA;TAS] [GO:0017148
            "negative regulation of translation" evidence=IMP] [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0043186 "P granule"
            evidence=IDA] [GO:0005634 "nucleus" evidence=IC] [GO:0000381
            "regulation of alternative mRNA splicing, via spliceosome"
            evidence=IMP] [GO:0003723 "RNA binding" evidence=IDA] [GO:0007281
            "germ cell development" evidence=IMP] [GO:0031536 "positive
            regulation of exit from mitosis" evidence=IMP] [GO:0002121
            "inter-male aggressive behavior" evidence=IMP] [GO:0007476
            "imaginal disc-derived wing morphogenesis" evidence=IMP]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 EMBL:AE014134 GO:GO:0007286
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0003730
            GO:GO:0002121 HSSP:P19339 GO:GO:0007476 GO:GO:0030727 GO:GO:0007319
            GO:GO:0031536 GO:GO:0042078 GeneTree:ENSGT00560000076837
            GO:GO:0000381 GO:GO:0043186 FlyBase:FBgn0000114 UniGene:Dm.4487
            GeneID:34648 KEGG:dme:Dmel_CG31762 CTD:34648 KO:K02177
            GenomeRNAi:34648 NextBio:789496 EMBL:BT133212 RefSeq:NP_723737.1
            SMR:Q8IP90 MINT:MINT-1597685 STRING:Q8IP90
            EnsemblMetazoa:FBtr0080344 EnsemblMetazoa:FBtr0331645
            UCSC:CG31762-RB InParanoid:Q8IP90 OMA:ASAYMST Uniprot:Q8IP90
        Length = 810

 Score = 133 (51.9 bits), Expect = 9.4e-09, Sum P(2) = 9.4e-09
 Identities = 25/71 (35%), Positives = 45/71 (63%)

Query:    32 DSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLS 91
             D+  +FVG +P  + E  +  +F +YG + ++N++RDK TG SKG CF+ +  + + + +
Sbjct:   355 DNIKMFVGQVPKSMDESQLREMFEEYGAVHSINVLRDKATGISKGCCFVTFYTRHAALKA 414

Query:    92 VDNLNGVKVLS 102
              D L+ VK L+
Sbjct:   415 QDALHNVKTLN 425

 Score = 109 (43.4 bits), Expect = 0.00058, P = 0.00058
 Identities = 23/85 (27%), Positives = 48/85 (56%)

Query:    36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
             +F+  LP + ++ D+   F  +G +++  +  DK T  SK F F+ +++  S  +++  +
Sbjct:   728 LFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAM 787

Query:    96 NGVKVLSRTIRVDHVNDYKPPKDNK 120
             NG +V ++ ++V      K PKD+K
Sbjct:   788 NGFQVGTKRLKVQ----LKKPKDSK 808

 Score = 34 (17.0 bits), Expect = 9.4e-09, Sum P(2) = 9.4e-09
 Identities = 6/9 (66%), Positives = 8/9 (88%)

Query:   151 IKQEKDSKP 159
             +K+ KDSKP
Sbjct:   801 LKKPKDSKP 809


>UNIPROTKB|K7ELT6 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
            HGNC:HGNC:1982 Ensembl:ENST00000590347 Ensembl:ENST00000591055
            Uniprot:K7ELT6
        Length = 135

 Score = 131 (51.2 bits), Expect = 9.7e-09, P = 9.7e-09
 Identities = 30/91 (32%), Positives = 56/91 (61%)

Query:    32 DSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYE---DQRST 88
             D   +FVGGL +D +E  +  +FS+YG+I  + +V+D+ T +S+GF F+ +E   D +  
Sbjct:     4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63

Query:    89 VLSVDNLNGVKVLSRT--IRVDH--VNDYKP 115
             +++++    ++VLSR+   R+ H   N  +P
Sbjct:    64 MMAMNGKVRIRVLSRSPVSRMGHPPANPSRP 94


>UNIPROTKB|Q83D11 [details] [associations]
            symbol:CBU_0935 "RNA binding protein" species:227377
            "Coxiella burnetii RSA 493" [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 EMBL:AE016828 GenomeReviews:AE016828_GR HSSP:Q9V535
            RefSeq:NP_819948.1 ProteinModelPortal:Q83D11 GeneID:1208828
            KEGG:cbu:CBU_0935 PATRIC:17930577 HOGENOM:HOG000026939 OMA:QVHSANI
            ProtClustDB:CLSK914425 BioCyc:CBUR227377:GJ7S-926-MONOMER
            Uniprot:Q83D11
        Length = 129

 Score = 131 (51.2 bits), Expect = 9.7e-09, P = 9.7e-09
 Identities = 29/84 (34%), Positives = 49/84 (58%)

Query:    24 TSWHDQYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYE 83
             +SW     D   I+VG LPY + E D+   FS++G I ++ +VR+  TG+SKG+ F+ Y 
Sbjct:    36 SSWKSDNNDQ--IYVGNLPYHVVENDLHQYFSRFGAIESVKIVRNFRTGRSKGYAFVTYV 93

Query:    84 DQRSTVLSVDNLNGVKVLSRTIRV 107
               +  V ++D  +G  +  R++ V
Sbjct:    94 TPKQAVKALD-AHGKDLQGRSLVV 116


>UNIPROTKB|Q8EK89 [details] [associations]
            symbol:SO_0208 "RNA-binding protein" species:211586
            "Shewanella oneidensis MR-1" [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR HSSP:P19339
            HOGENOM:HOG000269562 RefSeq:NP_715849.1 ProteinModelPortal:Q8EK89
            GeneID:1168093 KEGG:son:SO_0208 PATRIC:23520091 OMA:YTGPTMT
            ProtClustDB:CLSK905649 Uniprot:Q8EK89
        Length = 154

 Score = 131 (51.2 bits), Expect = 9.7e-09, P = 9.7e-09
 Identities = 34/107 (31%), Positives = 53/107 (49%)

Query:    20 SGSKTSWHDQYKDSAW-IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFC 78
             SG   +  +QY      ++VG LPY + EG+V  +F ++G + ++ LVRD+ TG+ KGF 
Sbjct:    49 SGKAQADDEQYVGPTMTLYVGNLPYRVHEGEVKVLFGEFGPVNSVRLVRDRKTGRRKGFG 108

Query:    79 FICYEDQRSTVLSVDNLNGVKVLSRTIRVDHVNDY-KPPKDNKYTDE 124
             F+   +  +    V  LN      RT++V           D   TDE
Sbjct:   109 FVEMSEAGAQKAMV-KLNDFNFQERTLKVREAKTQDSEAADRTGTDE 154


>TIGR_CMR|CBU_0935 [details] [associations]
            symbol:CBU_0935 "RNA-binding protein" species:227377
            "Coxiella burnetii RSA 493" [GO:0008150 "biological_process"
            evidence=ND] [GO:0003723 "RNA binding" evidence=ISS]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:AE016828 GenomeReviews:AE016828_GR HSSP:Q9V535
            RefSeq:NP_819948.1 ProteinModelPortal:Q83D11 GeneID:1208828
            KEGG:cbu:CBU_0935 PATRIC:17930577 HOGENOM:HOG000026939 OMA:QVHSANI
            ProtClustDB:CLSK914425 BioCyc:CBUR227377:GJ7S-926-MONOMER
            Uniprot:Q83D11
        Length = 129

 Score = 131 (51.2 bits), Expect = 9.7e-09, P = 9.7e-09
 Identities = 29/84 (34%), Positives = 49/84 (58%)

Query:    24 TSWHDQYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYE 83
             +SW     D   I+VG LPY + E D+   FS++G I ++ +VR+  TG+SKG+ F+ Y 
Sbjct:    36 SSWKSDNNDQ--IYVGNLPYHVVENDLHQYFSRFGAIESVKIVRNFRTGRSKGYAFVTYV 93

Query:    84 DQRSTVLSVDNLNGVKVLSRTIRV 107
               +  V ++D  +G  +  R++ V
Sbjct:    94 TPKQAVKALD-AHGKDLQGRSLVV 116


>TIGR_CMR|SO_0208 [details] [associations]
            symbol:SO_0208 "RNA-binding protein" species:211586
            "Shewanella oneidensis MR-1" [GO:0008150 "biological_process"
            evidence=ND] [GO:0003723 "RNA binding" evidence=ISS]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:AE014299 GenomeReviews:AE014299_GR HSSP:P19339
            HOGENOM:HOG000269562 RefSeq:NP_715849.1 ProteinModelPortal:Q8EK89
            GeneID:1168093 KEGG:son:SO_0208 PATRIC:23520091 OMA:YTGPTMT
            ProtClustDB:CLSK905649 Uniprot:Q8EK89
        Length = 154

 Score = 131 (51.2 bits), Expect = 9.7e-09, P = 9.7e-09
 Identities = 34/107 (31%), Positives = 53/107 (49%)

Query:    20 SGSKTSWHDQYKDSAW-IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFC 78
             SG   +  +QY      ++VG LPY + EG+V  +F ++G + ++ LVRD+ TG+ KGF 
Sbjct:    49 SGKAQADDEQYVGPTMTLYVGNLPYRVHEGEVKVLFGEFGPVNSVRLVRDRKTGRRKGFG 108

Query:    79 FICYEDQRSTVLSVDNLNGVKVLSRTIRVDHVNDY-KPPKDNKYTDE 124
             F+   +  +    V  LN      RT++V           D   TDE
Sbjct:   109 FVEMSEAGAQKAMV-KLNDFNFQERTLKVREAKTQDSEAADRTGTDE 154


>FB|FBgn0263396 [details] [associations]
            symbol:sqd "squid" species:7227 "Drosophila melanogaster"
            [GO:0005634 "nucleus" evidence=IC;IDA;TAS] [GO:0005730 "nucleolus"
            evidence=IDA] [GO:0005703 "polytene chromosome puff" evidence=IDA]
            [GO:0008069 "dorsal/ventral axis specification, ovarian follicular
            epithelium" evidence=IMP] [GO:0007297 "ovarian follicle cell
            migration" evidence=IMP] [GO:0048477 "oogenesis" evidence=IMP;TAS]
            [GO:0008298 "intracellular mRNA localization" evidence=NAS;TAS]
            [GO:0017148 "negative regulation of translation" evidence=TAS]
            [GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0009953
            "dorsal/ventral pattern formation" evidence=IMP;TAS] [GO:0006405
            "RNA export from nucleus" evidence=TAS] [GO:0030529
            "ribonucleoprotein complex" evidence=ISS;NAS] [GO:0003729 "mRNA
            binding" evidence=ISS;NAS] [GO:0035062 "omega speckle"
            evidence=IDA] [GO:0000785 "chromatin" evidence=IDA] [GO:0005737
            "cytoplasm" evidence=TAS] [GO:0000184 "nuclear-transcribed mRNA
            catabolic process, nonsense-mediated decay" evidence=TAS]
            [GO:0006406 "mRNA export from nucleus" evidence=NAS] [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0019094 "pole plasm mRNA localization"
            evidence=IMP] [GO:0000381 "regulation of alternative mRNA splicing,
            via spliceosome" evidence=IMP] [GO:0030720 "oocyte localization
            involved in germarium-derived egg chamber formation" evidence=IMP]
            [GO:0016325 "oocyte microtubule cytoskeleton organization"
            evidence=IMP] [GO:0007293 "germarium-derived egg chamber formation"
            evidence=IMP] [GO:0007314 "oocyte anterior/posterior axis
            specification" evidence=IMP] [GO:0045451 "pole plasm oskar mRNA
            localization" evidence=IEP] [GO:0071011 "precatalytic spliceosome"
            evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
            evidence=IC] [GO:0071013 "catalytic step 2 spliceosome"
            evidence=IDA] [GO:0033119 "negative regulation of RNA splicing"
            evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 EMBL:AE014297 GO:GO:0005737
            GO:GO:0000184 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0000785 GO:GO:0003730 GO:GO:0006406 GO:GO:0033119
            GO:GO:0071011 GO:GO:0000398 GO:GO:0071013 GO:GO:0030720
            GO:GO:0007297 eggNOG:COG0724 GO:GO:0045451 GO:GO:0005703
            GO:GO:0000381 GO:GO:0016325 GO:GO:0008069
            GeneTree:ENSGT00700000104255 GO:GO:0035062 EMBL:X62637 EMBL:X62638
            EMBL:S61875 EMBL:S62100 EMBL:AY118501 EMBL:BT001384 EMBL:BT003283
            EMBL:BT023832 EMBL:S51693 PIR:A47369 PIR:B41732 PIR:B47369
            PIR:C48110 RefSeq:NP_001247088.1 RefSeq:NP_652209.1
            RefSeq:NP_731825.1 RefSeq:NP_731826.1 RefSeq:NP_996203.1
            UniGene:Dm.7189 ProteinModelPortal:Q08473 SMR:Q08473 IntAct:Q08473
            MINT:MINT-847475 STRING:Q08473 PaxDb:Q08473
            EnsemblMetazoa:FBtr0082855 GeneID:41666 KEGG:dme:Dmel_CG16901
            CTD:41666 FlyBase:FBgn0263396 InParanoid:Q08473 KO:K03102
            OMA:GDIDSIN OrthoDB:EOG43BK52 PhylomeDB:Q08473 ChiTaRS:sqd
            GenomeRNAi:41666 NextBio:824926 Bgee:Q08473 GermOnline:CG16901
            Uniprot:Q08473
        Length = 344

 Score = 137 (53.3 bits), Expect = 1.1e-08, P = 1.1e-08
 Identities = 42/144 (29%), Positives = 73/144 (50%)

Query:    19 SSGSKTSWHDQYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFC 78
             SS ++++   Q  D   +FVGGL ++ +E ++   F +YGEI ++N+  D  TG+S+GF 
Sbjct:    41 SSDNQSAASGQRDDDRKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFA 100

Query:    79 FICYEDQRST--VLSVDN--LNGVKVLSRTIRVDHVNDYKPPKDNKYTDEETKKLRTIGC 134
             FI + +  +   V + D   +N  KV  +  +  H   +      + +DEE K     G 
Sbjct:   101 FIVFTNTEAIDKVSAADEHIINSKKVDPKKAKARHGKIFVGGLTTEISDEEIKTY--FG- 157

Query:   135 APGTEFGSILPVKTEDIKQEKDSK 158
                 +FG+I+ V+    KQ+   K
Sbjct:   158 ----QFGNIVEVEMPFDKQKSQRK 177

 Score = 117 (46.2 bits), Expect = 4.9e-06, P = 4.9e-06
 Identities = 26/84 (30%), Positives = 45/84 (53%)

Query:     5 TNVKNIKKLS--EQELSSGSKTSWHDQYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVN 62
             TN + I K+S  ++ + +  K            IFVGGL  ++S+ ++   F Q+G IV 
Sbjct:   105 TNTEAIDKVSAADEHIINSKKVDPKKAKARHGKIFVGGLTTEISDEEIKTYFGQFGNIVE 164

Query:    63 LNLVRDKITGKSKGFCFICYEDQR 86
             + +  DK   + KGFCFI ++ ++
Sbjct:   165 VEMPFDKQKSQRKGFCFITFDSEQ 188


>UNIPROTKB|E1BTK3 [details] [associations]
            symbol:ZCRB1 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc ion binding"
            evidence=IEA] [GO:0005689 "U12-type spliceosomal complex"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
            PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0000166
            GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676
            Gene3D:4.10.60.10 GO:GO:0005689 GeneTree:ENSGT00600000084414
            CTD:85437 KO:K13154 OMA:RXVTIMK EMBL:AADN02010031 IPI:IPI00592809
            RefSeq:XP_416034.1 ProteinModelPortal:E1BTK3
            Ensembl:ENSGALT00000015532 GeneID:417791 KEGG:gga:417791
            NextBio:20821039 Uniprot:E1BTK3
        Length = 216

 Score = 131 (51.2 bits), Expect = 1.1e-08, P = 1.1e-08
 Identities = 26/71 (36%), Positives = 43/71 (60%)

Query:    36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
             ++V  LP+ L+  D+  IFS+YG++V + +++DK T KSKG  FI + D+ S       L
Sbjct:    12 VYVSNLPFALTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKESAQNCSRAL 71

Query:    96 NGVKVLSRTIR 106
             N  ++  R I+
Sbjct:    72 NNKQLFGRVIK 82


>UNIPROTKB|Q6IRQ4 [details] [associations]
            symbol:rbmx "RNA-binding motif protein, X chromosome"
            species:8355 "Xenopus laevis" [GO:0000381 "regulation of
            alternative mRNA splicing, via spliceosome" evidence=ISS]
            [GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
            "chromatin binding" evidence=ISS] [GO:0003723 "RNA binding"
            evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
            "nucleus" evidence=ISS] [GO:0005719 "nuclear euchromatin"
            evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
            promoter" evidence=ISS] [GO:0006509 "membrane protein ectodomain
            proteolysis" evidence=ISS] [GO:0044530 "supraspliceosomal complex"
            evidence=ISS] [GO:0045944 "positive regulation of transcription
            from RNA polymerase II promoter" evidence=ISS] [GO:0048025
            "negative regulation of mRNA splicing, via spliceosome"
            evidence=ISS] [GO:0048026 "positive regulation of mRNA splicing,
            via spliceosome" evidence=ISS] [GO:0051260 "protein
            homooligomerization" evidence=ISS] [GO:0070062 "extracellular
            vesicular exosome" evidence=ISS] [GO:0071013 "catalytic step 2
            spliceosome" evidence=ISS] [GO:0071347 "cellular response to
            interleukin-1" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0007275
            GO:GO:0008380 GO:GO:0000166 GO:GO:0070062 GO:GO:0051260
            GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0045944
            GO:GO:0003682 GO:GO:0006366 GO:GO:0006509 GO:GO:0001047
            GO:GO:0005719 GO:GO:0071347 GO:GO:0071013 GO:GO:0048025
            GO:GO:0048026 GO:GO:0000381 GO:GO:0044530 HOVERGEN:HBG063314
            InterPro:IPR012604 Pfam:PF08081 CTD:27316 KO:K12885 EMBL:BC070649
            RefSeq:NP_001084981.1 UniGene:Xl.25221 HSSP:P08579
            ProteinModelPortal:Q6IRQ4 SMR:Q6IRQ4 GeneID:432041 KEGG:xla:432041
            Xenbase:XB-GENE-6078824 Uniprot:Q6IRQ4
        Length = 370

 Score = 122 (48.0 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
 Identities = 25/80 (31%), Positives = 45/80 (56%)

Query:    36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
             +F+GGL  + +E  +  +F +YG +V + L++D+ T KS+GF F+ +E       +   L
Sbjct:    10 LFIGGLNTETNEKALEAVFCKYGRVVEVLLMKDRETNKSRGFAFVTFESPADAKDAAREL 69

Query:    96 NGVKVLSRTIRVDHVNDYKP 115
             NG  +  + I+V+     KP
Sbjct:    70 NGKALDGKPIKVEQAT--KP 87

 Score = 35 (17.4 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
 Identities = 7/13 (53%), Positives = 8/13 (61%)

Query:   112 DY-KPPKDNKYTD 123
             DY  PP+D  Y D
Sbjct:   211 DYGPPPRDYSYRD 223


>UNIPROTKB|Q8TBF4 [details] [associations]
            symbol:ZCRB1 "Zinc finger CCHC-type and RNA-binding
            motif-containing protein 1" species:9606 "Homo sapiens" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0008270 "zinc ion binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
            "mRNA processing" evidence=IEA] [GO:0005654 "nucleoplasm"
            evidence=IEA] [GO:0005689 "U12-type spliceosomal complex"
            evidence=IDA] [GO:0008380 "RNA splicing" evidence=IC]
            InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
            SMART:SM00343 SMART:SM00360 GO:GO:0005654 GO:GO:0008380
            GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471111 Gene3D:4.10.60.10
            HOVERGEN:HBG107480 GO:GO:0005689 CTD:85437 HOGENOM:HOG000007632
            KO:K13154 OMA:RXVTIMK OrthoDB:EOG4GXFNW eggNOG:NOG270852
            EMBL:AB062361 EMBL:BC010177 EMBL:BC022543 EMBL:BK005200
            IPI:IPI00154614 RefSeq:NP_149105.3 UniGene:Hs.496279 PDB:2E5H
            PDBsum:2E5H ProteinModelPortal:Q8TBF4 SMR:Q8TBF4 STRING:Q8TBF4
            PhosphoSite:Q8TBF4 DMDM:158931154 PRIDE:Q8TBF4 DNASU:85437
            Ensembl:ENST00000266529 GeneID:85437 KEGG:hsa:85437 UCSC:uc001rmz.3
            GeneCards:GC12M042705 HGNC:HGNC:29620 HPA:HPA038864 MIM:610750
            neXtProt:NX_Q8TBF4 PharmGKB:PA143485674 InParanoid:Q8TBF4
            PhylomeDB:Q8TBF4 EvolutionaryTrace:Q8TBF4 GenomeRNAi:85437
            NextBio:76004 ArrayExpress:Q8TBF4 Bgee:Q8TBF4 CleanEx:HS_ZCRB1
            Genevestigator:Q8TBF4 GermOnline:ENSG00000139168 Uniprot:Q8TBF4
        Length = 217

 Score = 131 (51.2 bits), Expect = 1.1e-08, P = 1.1e-08
 Identities = 25/71 (35%), Positives = 43/71 (60%)

Query:    36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
             ++V  LP+ L+  D+  IFS+YG++V + +++DK T KSKG  FI + D+ S       +
Sbjct:    12 VYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAI 71

Query:    96 NGVKVLSRTIR 106
             N  ++  R I+
Sbjct:    72 NNKQLFGRVIK 82


>ZFIN|ZDB-GENE-990415-246 [details] [associations]
            symbol:elavl4 "ELAV (embryonic lethal, abnormal
            vision, Drosophila)-like 4 (Hu antigen D)" species:7955 "Danio
            rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
            "RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
            SMART:SM00360 ZFIN:ZDB-GENE-990415-246 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
            GeneTree:ENSGT00560000077064 EMBL:CR931780 EMBL:CU467068
            EMBL:CU929301 IPI:IPI00920316 ProteinModelPortal:F1R133
            Ensembl:ENSDART00000134787 ArrayExpress:F1R133 Bgee:F1R133
            Uniprot:F1R133
        Length = 408

 Score = 138 (53.6 bits), Expect = 1.2e-08, P = 1.2e-08
 Identities = 26/74 (35%), Positives = 48/74 (64%)

Query:    36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
             + V  LP ++++ +   +F   GEI +  LVRDKITG+S G+ F+ Y D +    +++ L
Sbjct:    90 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 149

Query:    96 NGVKVLSRTIRVDH 109
             NG+++ ++TI+V +
Sbjct:   150 NGLRLQTKTIKVSY 163

 Score = 111 (44.1 bits), Expect = 0.00011, P = 0.00011
 Identities = 21/64 (32%), Positives = 40/64 (62%)

Query:    36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
             ++V GLP  +++ ++  +FSQYG I+   ++ D++TG S+G  FI ++ +     ++  L
Sbjct:   176 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGGSRGVGFIRFDKRIEAEEAIKGL 235

Query:    96 NGVK 99
             NG K
Sbjct:   236 NGQK 239

 Score = 105 (42.0 bits), Expect = 0.00083, P = 0.00083
 Identities = 29/110 (26%), Positives = 52/110 (47%)

Query:     1 MNPLTNVKNIKKLSEQELSS--GSKTSWHDQYKDSAW-IFVGGLPYDLSEGDVICIFSQY 57
             +N    VK    ++   ++S  G     H     + W IFV  L  D  E  +  +F  +
Sbjct:   292 LNMAYGVKRFSPITIDSMTSLVGMNIPGHT---GTGWCIFVYNLSPDSDESVLWQLFGPF 348

Query:    58 GEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRV 107
             G + N+ ++RD  T K KGF F+   +     +++ +LNG ++  R ++V
Sbjct:   349 GAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQV 398


>RGD|628611 [details] [associations]
            symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
            Drosophila)-like 2 (Hu antigen B)" species:10116 "Rattus
            norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
            Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
            RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
            eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
            TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
            UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
            PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
            ArrayExpress:Q8CH84 Genevestigator:Q8CH84
            GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
        Length = 359

 Score = 137 (53.3 bits), Expect = 1.2e-08, P = 1.2e-08
 Identities = 25/69 (36%), Positives = 47/69 (68%)

Query:    41 LPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKV 100
             LP ++++ ++  +F   GEI +  LVRDKITG+S G+ F+ Y D +    +++ LNG+++
Sbjct:    46 LPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL 105

Query:   101 LSRTIRVDH 109
              ++TI+V +
Sbjct:   106 QTKTIKVSY 114

 Score = 110 (43.8 bits), Expect = 0.00012, P = 0.00012
 Identities = 21/64 (32%), Positives = 40/64 (62%)

Query:    36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
             ++V GLP  +++ ++  +FSQYG I+   ++ D++TG S+G  FI ++ +     ++  L
Sbjct:   127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 186

Query:    96 NGVK 99
             NG K
Sbjct:   187 NGQK 190

 Score = 107 (42.7 bits), Expect = 0.00035, P = 0.00035
 Identities = 23/76 (30%), Positives = 41/76 (53%)

Query:    33 SAW-IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLS 91
             + W IFV  L  D  E  +  +F  +G + N+ ++RD  T K KGF F+   +     ++
Sbjct:   274 TGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMA 333

Query:    92 VDNLNGVKVLSRTIRV 107
             + +LNG ++  R ++V
Sbjct:   334 IASLNGYRLGDRVLQV 349


>UNIPROTKB|Q8CH84 [details] [associations]
            symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
            norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
            Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
            RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
            eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
            TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
            UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
            PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
            ArrayExpress:Q8CH84 Genevestigator:Q8CH84
            GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
        Length = 359

 Score = 137 (53.3 bits), Expect = 1.2e-08, P = 1.2e-08
 Identities = 25/69 (36%), Positives = 47/69 (68%)

Query:    41 LPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKV 100
             LP ++++ ++  +F   GEI +  LVRDKITG+S G+ F+ Y D +    +++ LNG+++
Sbjct:    46 LPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL 105

Query:   101 LSRTIRVDH 109
              ++TI+V +
Sbjct:   106 QTKTIKVSY 114

 Score = 110 (43.8 bits), Expect = 0.00012, P = 0.00012
 Identities = 21/64 (32%), Positives = 40/64 (62%)

Query:    36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
             ++V GLP  +++ ++  +FSQYG I+   ++ D++TG S+G  FI ++ +     ++  L
Sbjct:   127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 186

Query:    96 NGVK 99
             NG K
Sbjct:   187 NGQK 190

 Score = 107 (42.7 bits), Expect = 0.00035, P = 0.00035
 Identities = 23/76 (30%), Positives = 41/76 (53%)

Query:    33 SAW-IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLS 91
             + W IFV  L  D  E  +  +F  +G + N+ ++RD  T K KGF F+   +     ++
Sbjct:   274 TGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMA 333

Query:    92 VDNLNGVKVLSRTIRV 107
             + +LNG ++  R ++V
Sbjct:   334 IASLNGYRLGDRVLQV 349


>TAIR|locus:2176222 [details] [associations]
            symbol:AT5G51300 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
            evidence=IEA] [GO:0008380 "RNA splicing" evidence=NAS] [GO:0000398
            "mRNA splicing, via spliceosome" evidence=RCA] InterPro:IPR000504
            InterPro:IPR001878 InterPro:IPR004087 InterPro:IPR004088
            InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084
            PROSITE:PS50102 PROSITE:PS50158 SMART:SM00322 SMART:SM00343
            SMART:SM00360 EMBL:CP002688 GO:GO:0008380 GO:GO:0000166
            GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:4.10.60.10
            SUPFAM:SSF57756 HSSP:Q9BW01 KO:K13095 EMBL:AB023044 OMA:GDGPSHE
            EMBL:AY142629 EMBL:AK316802 EMBL:AK317057 IPI:IPI00537668
            RefSeq:NP_001032055.1 RefSeq:NP_199943.1 RefSeq:NP_851169.1
            UniGene:At.22924 ProteinModelPortal:Q9LU44 SMR:Q9LU44 IntAct:Q9LU44
            STRING:Q9LU44 PRIDE:Q9LU44 EnsemblPlants:AT5G51300.1
            EnsemblPlants:AT5G51300.2 EnsemblPlants:AT5G51300.3 GeneID:835204
            KEGG:ath:AT5G51300 TAIR:At5g51300 InParanoid:Q9LU44
            PhylomeDB:Q9LU44 ProtClustDB:CLSN2687224 Genevestigator:Q9LU44
            Uniprot:Q9LU44
        Length = 804

 Score = 142 (55.0 bits), Expect = 1.2e-08, P = 1.2e-08
 Identities = 29/85 (34%), Positives = 48/85 (56%)

Query:    32 DSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLS 91
             D   +++G LP  L +  +I +FS +GEIV   +++D++TG SKG+ F+ Y D +    +
Sbjct:   478 DETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTA 537

Query:    92 VDNLNGVKVLSRTIRVDHVNDYKPP 116
             V  +NG +   RT+ V       PP
Sbjct:   538 VQAMNGYRFEGRTLAVRIAGKSPPP 562


>GENEDB_PFALCIPARUM|PF13_0122 [details] [associations]
            symbol:PF13_0122 "cyclophilin, putative"
            species:5833 "Plasmodium falciparum" [GO:0003723 "RNA binding"
            evidence=ISS] [GO:0003755 "peptidyl-prolyl cis-trans isomerase
            activity" evidence=ISS] [GO:0006457 "protein folding" evidence=ISS]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 KO:K01802 EMBL:AL844509 HOGENOM:HOG000276232
            GO:GO:0003755 RefSeq:XP_002809024.1 ProteinModelPortal:C0H5C7
            EnsemblProtists:PF13_0122:mRNA GeneID:814093 KEGG:pfa:PF13_0122
            EuPathDB:PlasmoDB:PF3D7_1320900 ProtClustDB:CLSZ2433376
            Uniprot:C0H5C7
        Length = 125

 Score = 130 (50.8 bits), Expect = 1.2e-08, P = 1.2e-08
 Identities = 34/103 (33%), Positives = 58/103 (56%)

Query:    36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICY---EDQRSTVLSV 92
             +FVGG+   + E  +  IFS +G+I N+ +  +  T K++GF F+ Y   +D +  + ++
Sbjct:    10 LFVGGIDETIDEKSLYDIFSSFGDIRNIEVPLNMTTKKNRGFAFVEYVEVDDAKHALYNM 69

Query:    93 DN--LNGVKV---LSRTIRVDHVNDYKPP-KDNKYTDEETKKL 129
             +N  LNG ++    S+T + DH   YKP   D  Y  E+ K+L
Sbjct:    70 NNFELNGKRIHVNYSKTKKADH---YKPIWLDEMYNQEKMKEL 109


>UNIPROTKB|C0H5C7 [details] [associations]
            symbol:PF13_0122 "RRM containing cyclophilin" species:36329
            "Plasmodium falciparum 3D7" [GO:0000413 "protein peptidyl-prolyl
            isomerization" evidence=ISS] [GO:0003723 "RNA binding"
            evidence=ISS] [GO:0003755 "peptidyl-prolyl cis-trans isomerase
            activity" evidence=ISS] [GO:0006457 "protein folding" evidence=ISS]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 KO:K01802 EMBL:AL844509 HOGENOM:HOG000276232
            GO:GO:0003755 RefSeq:XP_002809024.1 ProteinModelPortal:C0H5C7
            EnsemblProtists:PF13_0122:mRNA GeneID:814093 KEGG:pfa:PF13_0122
            EuPathDB:PlasmoDB:PF3D7_1320900 ProtClustDB:CLSZ2433376
            Uniprot:C0H5C7
        Length = 125

 Score = 130 (50.8 bits), Expect = 1.2e-08, P = 1.2e-08
 Identities = 34/103 (33%), Positives = 58/103 (56%)

Query:    36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICY---EDQRSTVLSV 92
             +FVGG+   + E  +  IFS +G+I N+ +  +  T K++GF F+ Y   +D +  + ++
Sbjct:    10 LFVGGIDETIDEKSLYDIFSSFGDIRNIEVPLNMTTKKNRGFAFVEYVEVDDAKHALYNM 69

Query:    93 DN--LNGVKV---LSRTIRVDHVNDYKPP-KDNKYTDEETKKL 129
             +N  LNG ++    S+T + DH   YKP   D  Y  E+ K+L
Sbjct:    70 NNFELNGKRIHVNYSKTKKADH---YKPIWLDEMYNQEKMKEL 109


>WB|WBGene00011155 [details] [associations]
            symbol:R09B3.2 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
            HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 EMBL:Z81108
            HSSP:P33240 PIR:T24067 RefSeq:NP_493022.1 ProteinModelPortal:O45712
            SMR:O45712 DIP:DIP-25840N MINT:MINT-1057569 STRING:O45712
            PaxDb:O45712 EnsemblMetazoa:R09B3.2 GeneID:173070
            KEGG:cel:CELE_R09B3.2 UCSC:R09B3.2 CTD:173070 WormBase:R09B3.2
            InParanoid:O45712 OMA:NINEARP NextBio:878155 Uniprot:O45712
        Length = 83

 Score = 130 (50.8 bits), Expect = 1.2e-08, P = 1.2e-08
 Identities = 25/76 (32%), Positives = 46/76 (60%)

Query:    36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
             ++VG  P+  +E ++   FS  G+I N+ +V D+ TG+ +GF FI + ++ S   +V+ +
Sbjct:     7 VYVGNAPFQTTEEELGNFFSSIGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQRAVEQM 66

Query:    96 NGVKVLSRTIRVDHVN 111
             NG +   R +RV+  N
Sbjct:    67 NGAEFNGRPLRVNLAN 82


>UNIPROTKB|Q01085 [details] [associations]
            symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006915
            "apoptotic process" evidence=IEA] [GO:0007281 "germ cell
            development" evidence=IEA] [GO:0008284 "positive regulation of cell
            proliferation" evidence=IEA] [GO:0017091 "AU-rich element binding"
            evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=ISS] [GO:0005634 "nucleus"
            evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
            evidence=ISS] [GO:0003723 "RNA binding" evidence=TAS] [GO:0006952
            "defense response" evidence=TAS] [GO:0005764 "lysosome"
            evidence=TAS] [GO:0006357 "regulation of transcription from RNA
            polymerase II promoter" evidence=TAS] [GO:0006917 "induction of
            apoptosis" evidence=TAS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
            GO:GO:0006915 GO:GO:0006952 GO:GO:0006917 GO:GO:0000166
            GO:GO:0008284 Gene3D:3.30.70.330 GO:GO:0006357 GO:GO:0005764
            GO:GO:0003723 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
            eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
            HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 EMBL:M96954 EMBL:AK290695
            EMBL:AK290984 IPI:IPI00005615 IPI:IPI00644708 PIR:A46174
            RefSeq:NP_001029097.1 RefSeq:NP_003243.1 UniGene:Hs.501203 PDB:1X4G
            PDB:2CQI PDB:2DH7 PDBsum:1X4G PDBsum:2CQI PDBsum:2DH7
            ProteinModelPortal:Q01085 SMR:Q01085 DIP:DIP-42425N IntAct:Q01085
            MINT:MINT-1203913 STRING:Q01085 PhosphoSite:Q01085 DMDM:267131
            PaxDb:Q01085 PRIDE:Q01085 Ensembl:ENST00000369093
            Ensembl:ENST00000436547 GeneID:7073 KEGG:hsa:7073 UCSC:uc001lei.1
            CTD:7073 GeneCards:GC10M121324 HGNC:HGNC:11804 MIM:603413
            neXtProt:NX_Q01085 PharmGKB:PA36513 OMA:EEVYNQS PhylomeDB:Q01085
            ChiTaRS:TIAL1 EvolutionaryTrace:Q01085 GenomeRNAi:7073
            NextBio:27661 ArrayExpress:Q01085 Bgee:Q01085 CleanEx:HS_TIAL1
            Genevestigator:Q01085 GermOnline:ENSG00000151923 Uniprot:Q01085
        Length = 375

 Score = 137 (53.3 bits), Expect = 1.3e-08, P = 1.3e-08
 Identities = 35/125 (28%), Positives = 66/125 (52%)

Query:     9 NIKKLSEQELSSGSKTSWHDQYKDSA---WIFVGGLPYDLSEGDVICIFSQYGEIVNLNL 65
             N +K+  +E+     T+   Q KD++    +FVG L  +++  D+   F+ +G+I +  +
Sbjct:    69 NGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARV 128

Query:    66 VRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHVNDYKPPKDNKYTDEE 125
             V+D  TGKSKG+ F+ + ++     ++ ++ G  +  R IR +     KPP      +  
Sbjct:   129 VKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATR-KPPAPKSTQENN 187

Query:   126 TKKLR 130
             TK+LR
Sbjct:   188 TKQLR 192


>UNIPROTKB|F2Z4H8 [details] [associations]
            symbol:TIAL1 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0017145 "stem cell division" evidence=IEA] [GO:0017091
            "AU-rich element binding" evidence=IEA] [GO:0010494 "cytoplasmic
            stress granule" evidence=IEA] [GO:0008284 "positive regulation of
            cell proliferation" evidence=IEA] [GO:0007281 "germ cell
            development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 Gene3D:3.30.70.330
            GO:GO:0017091 GO:GO:0007281 GO:GO:0010494 GO:GO:0017145
            GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:NGSKQLR
            EMBL:DAAA02059399 IPI:IPI00707976 RefSeq:NP_001179985.1
            UniGene:Bt.15754 ProteinModelPortal:F2Z4H8
            Ensembl:ENSBTAT00000005331 GeneID:614540 KEGG:bta:614540
            NextBio:20899153 Uniprot:F2Z4H8
        Length = 380

 Score = 137 (53.3 bits), Expect = 1.3e-08, P = 1.3e-08
 Identities = 35/125 (28%), Positives = 66/125 (52%)

Query:     9 NIKKLSEQELSSGSKTSWHDQYKDSA---WIFVGGLPYDLSEGDVICIFSQYGEIVNLNL 65
             N +K+  +E+     T+   Q KD++    +FVG L  +++  D+   F+ +G+I +  +
Sbjct:    69 NGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARV 128

Query:    66 VRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHVNDYKPPKDNKYTDEE 125
             V+D  TGKSKG+ F+ + ++     ++ ++ G  +  R IR +     KPP      +  
Sbjct:   129 VKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATR-KPPAPKSTQENN 187

Query:   126 TKKLR 130
             TK+LR
Sbjct:   188 TKQLR 192


>TAIR|locus:2147625 [details] [associations]
            symbol:AT5G19960 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0005634 "nucleus" evidence=ISM] [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:CP002688 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            HSSP:P33240 EMBL:AY093121 EMBL:BT003382 IPI:IPI00545520
            RefSeq:NP_568388.1 UniGene:At.31237 ProteinModelPortal:Q8RWF8
            SMR:Q8RWF8 IntAct:Q8RWF8 STRING:Q8RWF8 PRIDE:Q8RWF8
            EnsemblPlants:AT5G19960.1 GeneID:832118 KEGG:ath:AT5G19960
            TAIR:At5g19960 InParanoid:Q8RWF8 OMA:GKCYGFV PhylomeDB:Q8RWF8
            ProtClustDB:CLSN2689809 ArrayExpress:Q8RWF8 Genevestigator:Q8RWF8
            Uniprot:Q8RWF8
        Length = 337

 Score = 136 (52.9 bits), Expect = 1.3e-08, P = 1.3e-08
 Identities = 27/80 (33%), Positives = 51/80 (63%)

Query:    32 DSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDK-ITGKSKGFCFICYEDQRSTVL 90
             D   ++VGGLPYD++E  V  +FS YG ++ + +V D+ + GK  GF  + + ++RS   
Sbjct:     5 DGNSVYVGGLPYDITEEAVRRVFSIYGSVLTVKIVNDRSVRGKCYGF--VTFSNRRSADD 62

Query:    91 SVDNLNGVKVLSRTIRVDHV 110
             ++++++G  +  R +RV+ V
Sbjct:    63 AIEDMDGKSIGGRAVRVNDV 82


>ZFIN|ZDB-GENE-040704-9 [details] [associations]
            symbol:elavl2 "ELAV (embryonic lethal, abnormal
            vision, Drosophila)-like 2 (Hu antigen B)" species:7955 "Danio
            rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
            "RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
            InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
            SMART:SM00360 ZFIN:ZDB-GENE-040704-9 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
            HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
            GeneTree:ENSGT00560000077064 OrthoDB:EOG4JHCFV EMBL:AL954145
            IPI:IPI00482002 UniGene:Dr.84858 SMR:Q1MT19
            Ensembl:ENSDART00000139420 InParanoid:Q1MT19 Uniprot:Q1MT19
        Length = 388

 Score = 137 (53.3 bits), Expect = 1.4e-08, P = 1.4e-08
 Identities = 25/74 (33%), Positives = 49/74 (66%)

Query:    36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
             + V  LP ++++ ++  +F   GEI +  LVRDKITG+S G+ F+ Y + +    +++ L
Sbjct:    70 LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYMEPKDAEKAINTL 129

Query:    96 NGVKVLSRTIRVDH 109
             NG+++ ++TI+V +
Sbjct:   130 NGLRLQTKTIKVSY 143

 Score = 106 (42.4 bits), Expect = 0.00057, P = 0.00057
 Identities = 20/64 (31%), Positives = 40/64 (62%)

Query:    36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
             ++V GLP  +++ ++  +FSQ+G I+   ++ D++TG S+G  FI ++ +     ++  L
Sbjct:   156 LYVSGLPKTMTQKELEQLFSQFGRIITSRILVDQVTGVSRGVGFIRFDRRVEAEEAIKGL 215

Query:    96 NGVK 99
             NG K
Sbjct:   216 NGQK 219

 Score = 106 (42.4 bits), Expect = 0.00057, P = 0.00057
 Identities = 23/76 (30%), Positives = 41/76 (53%)

Query:    33 SAW-IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLS 91
             + W IFV  L  D  E  +  +F  +G + N+ ++RD  T K KGF F+   +     ++
Sbjct:   303 TGWCIFVYNLAPDADENVLWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAVA 362

Query:    92 VDNLNGVKVLSRTIRV 107
             + +LNG ++  R ++V
Sbjct:   363 IASLNGYRLGDRVLQV 378


>UNIPROTKB|F1NY49 [details] [associations]
            symbol:374274 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
            development" evidence=IEA] [GO:0008284 "positive regulation of cell
            proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
            granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
            evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
            Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0010494 GO:GO:0017145
            GeneTree:ENSGT00680000099967 OMA:EEVYNQS EMBL:AADN02030982
            IPI:IPI00575679 Ensembl:ENSGALT00000015349 ArrayExpress:F1NY49
            Uniprot:F1NY49
        Length = 388

 Score = 137 (53.3 bits), Expect = 1.4e-08, P = 1.4e-08
 Identities = 35/125 (28%), Positives = 66/125 (52%)

Query:     9 NIKKLSEQELSSGSKTSWHDQYKDSA---WIFVGGLPYDLSEGDVICIFSQYGEIVNLNL 65
             N +K+  +E+     T+   Q KD++    +FVG L  +++  D+   F+ +G+I +  +
Sbjct:    85 NGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARV 144

Query:    66 VRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHVNDYKPPKDNKYTDEE 125
             V+D  TGKSKG+ F+ + ++     ++ ++ G  +  R IR +     KPP      +  
Sbjct:   145 VKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATR-KPPAPKSTQENN 203

Query:   126 TKKLR 130
             TK+LR
Sbjct:   204 TKQLR 208


>UNIPROTKB|F1NS94 [details] [associations]
            symbol:374274 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
            development" evidence=IEA] [GO:0008284 "positive regulation of cell
            proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
            granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
            evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
            Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0010494 GO:GO:0017145
            GeneTree:ENSGT00680000099967 OMA:EEVYNQS EMBL:AADN02030982
            IPI:IPI00681845 Ensembl:ENSGALT00000029737 ArrayExpress:F1NS94
            Uniprot:F1NS94
        Length = 389

 Score = 137 (53.3 bits), Expect = 1.4e-08, P = 1.4e-08
 Identities = 35/125 (28%), Positives = 66/125 (52%)

Query:     9 NIKKLSEQELSSGSKTSWHDQYKDSA---WIFVGGLPYDLSEGDVICIFSQYGEIVNLNL 65
             N +K+  +E+     T+   Q KD++    +FVG L  +++  D+   F+ +G+I +  +
Sbjct:    86 NGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARV 145

Query:    66 VRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHVNDYKPPKDNKYTDEE 125
             V+D  TGKSKG+ F+ + ++     ++ ++ G  +  R IR +     KPP      +  
Sbjct:   146 VKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATR-KPPAPKSTQENN 204

Query:   126 TKKLR 130
             TK+LR
Sbjct:   205 TKQLR 209


>UNIPROTKB|E2RA41 [details] [associations]
            symbol:TIAL1 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0017145 "stem cell division" evidence=IEA]
            [GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0010494
            "cytoplasmic stress granule" evidence=IEA] [GO:0008284 "positive
            regulation of cell proliferation" evidence=IEA] [GO:0007281 "germ
            cell development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 Gene3D:3.30.70.330
            GO:GO:0017091 GO:GO:0007281 GO:GO:0010494 GO:GO:0017145
            GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:EEVYNQS
            EMBL:AAEX03015584 EMBL:AAEX03015585 RefSeq:XP_852319.1
            ProteinModelPortal:E2RA41 SMR:E2RA41 Ensembl:ENSCAFT00000019370
            GeneID:477841 KEGG:cfa:477841 NextBio:20853261 Uniprot:E2RA41
        Length = 392

 Score = 137 (53.3 bits), Expect = 1.4e-08, P = 1.4e-08
 Identities = 35/125 (28%), Positives = 66/125 (52%)

Query:     9 NIKKLSEQELSSGSKTSWHDQYKDSA---WIFVGGLPYDLSEGDVICIFSQYGEIVNLNL 65
             N +K+  +E+     T+   Q KD++    +FVG L  +++  D+   F+ +G+I +  +
Sbjct:    86 NGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARV 145

Query:    66 VRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHVNDYKPPKDNKYTDEE 125
             V+D  TGKSKG+ F+ + ++     ++ ++ G  +  R IR +     KPP      +  
Sbjct:   146 VKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATR-KPPAPKSTQENN 204

Query:   126 TKKLR 130
             TK+LR
Sbjct:   205 TKQLR 209


>UNIPROTKB|F2Z5F9 [details] [associations]
            symbol:LOC100736782 "Uncharacterized protein" species:9823
            "Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:EEVYNQS
            EMBL:CT826370 EMBL:CT867965 RefSeq:XP_003133244.1 UniGene:Ssc.56271
            ProteinModelPortal:F2Z5F9 SMR:F2Z5F9 Ensembl:ENSSSCT00000011686
            GeneID:100158186 KEGG:ssc:100158186 Uniprot:F2Z5F9
        Length = 392

 Score = 137 (53.3 bits), Expect = 1.4e-08, P = 1.4e-08
 Identities = 35/125 (28%), Positives = 66/125 (52%)

Query:     9 NIKKLSEQELSSGSKTSWHDQYKDSA---WIFVGGLPYDLSEGDVICIFSQYGEIVNLNL 65
             N +K+  +E+     T+   Q KD++    +FVG L  +++  D+   F+ +G+I +  +
Sbjct:    86 NGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARV 145

Query:    66 VRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHVNDYKPPKDNKYTDEE 125
             V+D  TGKSKG+ F+ + ++     ++ ++ G  +  R IR +     KPP      +  
Sbjct:   146 VKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATR-KPPAPKSTQENN 204

Query:   126 TKKLR 130
             TK+LR
Sbjct:   205 TKQLR 209


>ZFIN|ZDB-GENE-070424-97 [details] [associations]
            symbol:hnrnpd "heterogeneous nuclear
            ribonucleoprotein D" species:7955 "Danio rerio" [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-070424-97 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104347
            OMA:PNQNWNQ InterPro:IPR012956 Pfam:PF08143 EMBL:CR847788
            IPI:IPI00512852 Ensembl:ENSDART00000101414
            Ensembl:ENSDART00000123048 Uniprot:F1Q8A5
        Length = 314

 Score = 135 (52.6 bits), Expect = 1.4e-08, P = 1.4e-08
 Identities = 39/120 (32%), Positives = 62/120 (51%)

Query:    19 SSGSKTSWHDQYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFC 78
             + GSK       +D   +FVGGL +D ++ D+   F+++GE+V+  L  D +TG+S+GF 
Sbjct:    39 AEGSKIDASKNEEDEGKMFVGGLSWDTTKKDLKDYFTKFGEVVDCTLKLDPLTGRSRGFG 98

Query:    79 FICYEDQRSTVLSVDNLNGVKVLSRTIRVDHVNDYKPPKDNKYTDEETKKLRTIGCAPGT 138
             F+ +++  S V  V      K+  + I      D K  K  K T E  KK+   G +P T
Sbjct:    99 FVLFKEAES-VEKVITQKEHKLNGKVI------DPKKAKAMK-TKEPVKKIFVGGLSPDT 150


>TAIR|locus:2013016 [details] [associations]
            symbol:CSTF64 "cleavage stimulating factor 64"
            species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
            "nucleus" evidence=ISM] [GO:0003729 "mRNA binding" evidence=IDA]
            [GO:0005515 "protein binding" evidence=IPI] [GO:0031123 "RNA 3'-end
            processing" evidence=IMP] [GO:0045892 "negative regulation of
            transcription, DNA-dependent" evidence=IMP] [GO:0048589
            "developmental growth" evidence=IMP] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:CP002684 GO:GO:0045892 GO:GO:0000166 GO:GO:0003729
            Gene3D:3.30.70.330 GO:GO:0048589 EMBL:AC012654 KO:K14407
            InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
            GO:GO:0031123 HSSP:P33240 UniGene:At.12026 EMBL:AK229116
            IPI:IPI00522487 PIR:E96740 RefSeq:NP_177325.2 UniGene:At.22646
            SMR:Q9M9G6 IntAct:Q9M9G6 STRING:Q9M9G6 EnsemblPlants:AT1G71800.1
            GeneID:843510 KEGG:ath:AT1G71800 TAIR:At1g71800 InParanoid:Q9M9G6
            OMA:NADRNRE ProtClustDB:CLSN2714792 Genevestigator:Q9M9G6
            Uniprot:Q9M9G6
        Length = 461

 Score = 138 (53.6 bits), Expect = 1.4e-08, P = 1.4e-08
 Identities = 29/78 (37%), Positives = 46/78 (58%)

Query:    36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
             +FVG +PYD +E  +  I  + G +V+  LV D+ TGK KG+ F  Y+D+ + + +  NL
Sbjct:    11 VFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEETALSARRNL 70

Query:    96 NGVKVLSRTIRVDHV-ND 112
                ++  R +RVD   ND
Sbjct:    71 QSYEINGRQLRVDFAEND 88


>TAIR|locus:2079276 [details] [associations]
            symbol:ATRZ-1A species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA;IDA] [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=ISS] [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0009409 "response to cold" evidence=IMP] [GO:0009631 "cold
            acclimation" evidence=IGI] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829 "cytosol"
            evidence=IDA] InterPro:IPR000504 InterPro:IPR001878
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
            PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0005829
            GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
            GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0009631
            GO:GO:0003676 Gene3D:4.10.60.10 EMBL:AP001298 HOGENOM:HOG000276232
            UniGene:At.48707 HSSP:Q61474 KO:K12885 EMBL:AY054613 EMBL:AF424613
            EMBL:AY072457 EMBL:AK221725 EMBL:AK227088 IPI:IPI00530350
            RefSeq:NP_189273.1 ProteinModelPortal:Q9LIN3 SMR:Q9LIN3
            IntAct:Q9LIN3 STRING:Q9LIN3 PRIDE:Q9LIN3 EnsemblPlants:AT3G26420.1
            GeneID:822246 KEGG:ath:AT3G26420 TAIR:At3g26420 InParanoid:Q9LIN3
            OMA:SSKDDRY PhylomeDB:Q9LIN3 ProtClustDB:CLSN2723027
            Genevestigator:Q9LIN3 Uniprot:Q9LIN3
        Length = 245

 Score = 132 (51.5 bits), Expect = 1.5e-08, P = 1.5e-08
 Identities = 25/78 (32%), Positives = 48/78 (61%)

Query:    37 FVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLN 96
             F+GGL +  S+  +   F +YG +V   +V DK +G+S+GF FI ++++++   ++  +N
Sbjct:    10 FIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAAMN 69

Query:    97 GVKVLSRTIRVDHVNDYK 114
             G+ +  RTI VD    ++
Sbjct:    70 GMDLDGRTITVDKAQPHQ 87


>ASPGD|ASPL0000005213 [details] [associations]
            symbol:AN6074 species:162425 "Emericella nidulans"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005849 "mRNA
            cleavage factor complex" evidence=IEA] [GO:0003729 "mRNA binding"
            evidence=IEA] [GO:0046982 "protein heterodimerization activity"
            evidence=IEA] [GO:0006379 "mRNA cleavage" evidence=IEA] [GO:0006378
            "mRNA polyadenylation" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:BN001301
            InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
            OMA:QLAYAIF ProteinModelPortal:C8V2S8 EnsemblFungi:CADANIAT00006943
            Uniprot:C8V2S8
        Length = 293

 Score = 134 (52.2 bits), Expect = 1.6e-08, P = 1.6e-08
 Identities = 31/86 (36%), Positives = 48/86 (55%)

Query:    36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
             +F+G +PY+L+E  V  I S  G +    L+ +  TGK KG+ F  + D  +   +V NL
Sbjct:    10 VFLGNIPYNLTEEQVKDILSTAGTVTKFRLMMNPETGKPKGYGFADFADADAAASAVRNL 69

Query:    96 NGVKVLSRTIRVD--HVNDYKP-PKD 118
             N  +++ R IRVD  H N+    P+D
Sbjct:    70 NDYEIMGRKIRVDWPHNNEKDSVPED 95


>UNIPROTKB|D4A964 [details] [associations]
            symbol:Tial1 "Protein Tial1" species:10116 "Rattus
            norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            RGD:1595845 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            IPI:IPI00949247 Ensembl:ENSRNOT00000066938 Uniprot:D4A964
        Length = 368

 Score = 136 (52.9 bits), Expect = 1.6e-08, P = 1.6e-08
 Identities = 35/125 (28%), Positives = 66/125 (52%)

Query:     9 NIKKLSEQELSSGSKTSWHDQYKDSA---WIFVGGLPYDLSEGDVICIFSQYGEIVNLNL 65
             N +K+  +E+     T+   Q KD++    +FVG L  +++  D+   F+ +G+I +  +
Sbjct:    86 NGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARV 145

Query:    66 VRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHVNDYKPPKDNKYTDEE 125
             V+D  TGKSKG+ F+ + ++     ++ ++ G  +  R IR +     KPP      +  
Sbjct:   146 VKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATR-KPPAPKSTQETN 204

Query:   126 TKKLR 130
             TK+LR
Sbjct:   205 TKQLR 209


>POMBASE|SPAC644.16 [details] [associations]
            symbol:SPAC644.16 "RNA-binding protein (predicted)"
            species:4896 "Schizosaccharomyces pombe" [GO:0003723 "RNA binding"
            evidence=ISO] [GO:0005634 "nucleus" evidence=IDA] [GO:0005849 "mRNA
            cleavage factor complex" evidence=ISO] [GO:0006378 "mRNA
            polyadenylation" evidence=ISO] [GO:0006379 "mRNA cleavage"
            evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 PomBase:SPAC644.16 EMBL:CU329670
            GO:GO:0000166 Gene3D:3.30.70.330 eggNOG:NOG246793 GO:GO:0006378
            GO:GO:0003723 GO:GO:0006379 GO:GO:0005849 KO:K14407
            InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
            OrthoDB:EOG4GQTF6 HSSP:P33240 RefSeq:NP_593884.1
            ProteinModelPortal:Q9P6P7 EnsemblFungi:SPAC644.16.1 GeneID:2543462
            KEGG:spo:SPAC644.16 OMA:SHEERAN NextBio:20804474 Uniprot:Q9P6P7
        Length = 422

 Score = 137 (53.3 bits), Expect = 1.6e-08, P = 1.6e-08
 Identities = 29/76 (38%), Positives = 44/76 (57%)

Query:    33 SAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSV 92
             S  ++VG +PY+++E  VI IF Q G + +  LV D  +G+ KG+ F  Y D  +   +V
Sbjct:     4 SCVVYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAASAV 63

Query:    93 DNLNGVKVLSRTIRVD 108
              NLN     +R +RVD
Sbjct:    64 RNLNNYDAGTRRLRVD 79


>UNIPROTKB|F1LQ36 [details] [associations]
            symbol:Tial1 "Protein Tial1" species:10116 "Rattus
            norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
            development" evidence=IEA] [GO:0008284 "positive regulation of cell
            proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
            granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
            evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 RGD:1595845 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
            Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
            GO:GO:0017145 GeneTree:ENSGT00680000099967 IPI:IPI00555194
            Ensembl:ENSRNOT00000027463 Uniprot:F1LQ36
        Length = 371

 Score = 136 (52.9 bits), Expect = 1.6e-08, P = 1.6e-08
 Identities = 35/125 (28%), Positives = 66/125 (52%)

Query:     9 NIKKLSEQELSSGSKTSWHDQYKDSA---WIFVGGLPYDLSEGDVICIFSQYGEIVNLNL 65
             N +K+  +E+     T+   Q KD++    +FVG L  +++  D+   F+ +G+I +  +
Sbjct:    86 NGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARV 145

Query:    66 VRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHVNDYKPPKDNKYTDEE 125
             V+D  TGKSKG+ F+ + ++     ++ ++ G  +  R IR +     KPP      +  
Sbjct:   146 VKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATR-KPPAPKSTQETN 204

Query:   126 TKKLR 130
             TK+LR
Sbjct:   205 TKQLR 209


>UNIPROTKB|D6RAF8 [details] [associations]
            symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0043488 "regulation of mRNA stability" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005829 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 GO:GO:0048255 HOGENOM:HOG000234441 EMBL:AC124016
            HGNC:HGNC:5036 ChiTaRS:HNRNPD InterPro:IPR012956 Pfam:PF08143
            IPI:IPI00965952 ProteinModelPortal:D6RAF8 SMR:D6RAF8
            Ensembl:ENST00000507010 ArrayExpress:D6RAF8 Bgee:D6RAF8
            Uniprot:D6RAF8
        Length = 221

 Score = 130 (50.8 bits), Expect = 1.6e-08, P = 1.6e-08
 Identities = 36/105 (34%), Positives = 57/105 (54%)

Query:    35 W-IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVD 93
             W +F+GGL +D ++ D+   FS++GE+V+  L  D ITG+S+GF F+ +++  S    +D
Sbjct:    97 WKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMD 156

Query:    94 NLNGVKVLSRTIRVDHVNDYKPPKDNKYTDEETKKLRTIGCAPGT 138
                  K+  + I      D K  K  K T E  KK+   G +P T
Sbjct:   157 QKEH-KLNGKVI------DPKRAKAMK-TKEPVKKIFVGGLSPDT 193


>FB|FBgn0010263 [details] [associations]
            symbol:Rbp9 "RNA-binding protein 9" species:7227 "Drosophila
            melanogaster" [GO:0003729 "mRNA binding" evidence=ISS;NAS]
            [GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0007293
            "germarium-derived egg chamber formation" evidence=TAS] [GO:0005634
            "nucleus" evidence=TAS] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0048477
            "oogenesis" evidence=IMP] [GO:0036093 "germ cell proliferation"
            evidence=IMP] [GO:0060856 "establishment of blood-brain barrier"
            evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
            InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0007293 TIGRFAMs:TIGR01661
            HSSP:P26378 GO:GO:0060856 FlyBase:FBgn0010263 EMBL:S55886
            ProteinModelPortal:Q26293 SMR:Q26293 STRING:Q26293 PRIDE:Q26293
            InParanoid:Q26293 ArrayExpress:Q26293 Bgee:Q26293 Uniprot:Q26293
        Length = 444

 Score = 137 (53.3 bits), Expect = 1.7e-08, P = 1.7e-08
 Identities = 24/72 (33%), Positives = 47/72 (65%)

Query:    36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
             + V  LP  +S+ ++  +F  +GE+ +  L+RDK+TG+S G+ F+ Y  Q     +++ L
Sbjct:   112 LIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDAEKAINAL 171

Query:    96 NGVKVLSRTIRV 107
             NG+++ ++TI+V
Sbjct:   172 NGLRLQNKTIKV 183

 Score = 110 (43.8 bits), Expect = 0.00017, P = 0.00017
 Identities = 29/91 (31%), Positives = 48/91 (52%)

Query:    33 SAW-IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLS 91
             S W IFV  L  D  E  +  +F  +G + ++ ++RD  + K KGF F+   +    VL+
Sbjct:   359 SGWCIFVYNLAPDTEENVLWQLFGPFGAVQSVKVIRDLQSNKCKGFGFVTMTNYEEAVLA 418

Query:    92 VDNLNGVKVLSRTIRVDHVNDYKPPKDNKYT 122
             + +LNG  + +R ++V     +K  K NK T
Sbjct:   419 IQSLNGYTLGNRVLQVS----FKTNK-NKQT 444

 Score = 109 (43.4 bits), Expect = 0.00026, P = 0.00026
 Identities = 29/92 (31%), Positives = 49/92 (53%)

Query:    36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGK-----SKGFCFICYEDQRSTVL 90
             ++V GLP ++++ D+  +FS YG+I+   ++ D ITG+     SKG  FI ++ +     
Sbjct:   198 LYVSGLPKNMTQSDLESLFSPYGKIITSRILCDNITGEHAAGLSKGVGFIRFDQRFEADR 257

Query:    91 SVDNLNGVKVLSRT--IRVDHVNDYKPPKDNK 120
             ++  LNG    + T  I V   N+   P  NK
Sbjct:   258 AIKELNGTTPKNSTEPITVKFANN---PSSNK 286


>MGI|MGI:107913 [details] [associations]
            symbol:Tial1 "Tia1 cytotoxic granule-associated RNA binding
            protein-like 1" species:10090 "Mus musculus" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
            evidence=IDA] [GO:0006915 "apoptotic process" evidence=IEA]
            [GO:0007281 "germ cell development" evidence=IMP] [GO:0008284
            "positive regulation of cell proliferation" evidence=IMP]
            [GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0017091
            "AU-rich element binding" evidence=IDA] [GO:0017145 "stem cell
            division" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:107913
            GO:GO:0005634 GO:GO:0006915 GO:GO:0000166 GO:GO:0008284
            Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
            eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
            HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 CTD:7073 ChiTaRS:TIAL1
            EMBL:U55861 IPI:IPI00108085 PIR:S72436 RefSeq:NP_033409.1
            UniGene:Mm.242072 ProteinModelPortal:P70318 SMR:P70318
            IntAct:P70318 STRING:P70318 PhosphoSite:P70318 PaxDb:P70318
            PRIDE:P70318 Ensembl:ENSMUST00000106226 GeneID:21843 KEGG:mmu:21843
            InParanoid:P70318 OMA:NGSKQLR NextBio:301310 Bgee:P70318
            Genevestigator:P70318 GermOnline:ENSMUSG00000030846 Uniprot:P70318
        Length = 392

 Score = 136 (52.9 bits), Expect = 1.8e-08, P = 1.8e-08
 Identities = 35/125 (28%), Positives = 66/125 (52%)

Query:     9 NIKKLSEQELSSGSKTSWHDQYKDSA---WIFVGGLPYDLSEGDVICIFSQYGEIVNLNL 65
             N +K+  +E+     T+   Q KD++    +FVG L  +++  D+   F+ +G+I +  +
Sbjct:    86 NGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARV 145

Query:    66 VRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHVNDYKPPKDNKYTDEE 125
             V+D  TGKSKG+ F+ + ++     ++ ++ G  +  R IR +     KPP      +  
Sbjct:   146 VKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATR-KPPAPKSTQETN 204

Query:   126 TKKLR 130
             TK+LR
Sbjct:   205 TKQLR 209


>RGD|1595845 [details] [associations]
            symbol:Tial1 "Tia1 cytotoxic granule-associated RNA binding
            protein-like 1" species:10116 "Rattus norvegicus" [GO:0005634
            "nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO]
            [GO:0007281 "germ cell development" evidence=ISO] [GO:0008284
            "positive regulation of cell proliferation" evidence=ISO]
            [GO:0010494 "cytoplasmic stress granule" evidence=ISO] [GO:0017091
            "AU-rich element binding" evidence=ISO] [GO:0017145 "stem cell
            division" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1595845
            GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 EMBL:CH473956
            Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
            eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
            HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 CTD:7073 IPI:IPI00555194
            EMBL:BC091409 RefSeq:NP_001013211.1 UniGene:Rn.162475 SMR:Q5BJN3
            STRING:Q5BJN3 GeneID:361655 KEGG:rno:361655 UCSC:RGD:1595845
            InParanoid:Q5BJN3 NextBio:677112 Genevestigator:Q5BJN3
            Uniprot:Q5BJN3
        Length = 392

 Score = 136 (52.9 bits), Expect = 1.8e-08, P = 1.8e-08
 Identities = 35/125 (28%), Positives = 66/125 (52%)

Query:     9 NIKKLSEQELSSGSKTSWHDQYKDSA---WIFVGGLPYDLSEGDVICIFSQYGEIVNLNL 65
             N +K+  +E+     T+   Q KD++    +FVG L  +++  D+   F+ +G+I +  +
Sbjct:    86 NGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARV 145

Query:    66 VRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHVNDYKPPKDNKYTDEE 125
             V+D  TGKSKG+ F+ + ++     ++ ++ G  +  R IR +     KPP      +  
Sbjct:   146 VKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATR-KPPAPKSTQETN 204

Query:   126 TKKLR 130
             TK+LR
Sbjct:   205 TKQLR 209


>ASPGD|ASPL0000055210 [details] [associations]
            symbol:AN0917 species:162425 "Emericella nidulans"
            [GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0000166 EMBL:BN001308
            GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AACD01000014
            eggNOG:COG0724 TIGRFAMs:TIGR01622 KO:K13091 HOGENOM:HOG000204008
            OrthoDB:EOG4SR154 RefSeq:XP_658521.1 ProteinModelPortal:Q5BEW3
            EnsemblFungi:CADANIAT00001739 GeneID:2876682 KEGG:ani:AN0917.2
            OMA:YVEFRTI Uniprot:Q5BEW3
        Length = 552

 Score = 138 (53.6 bits), Expect = 1.9e-08, P = 1.9e-08
 Identities = 35/125 (28%), Positives = 65/125 (52%)

Query:     4 LTNVKNIKKLSEQELSSGSKTS--WHDQYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIV 61
             LT  +  ++    E SSG+K S  +H  Y       VG + + + E D+  +F  +GE+ 
Sbjct:   248 LTEAEKNRQARNSEASSGNKHSAPFHRLY-------VGNIHFSIDENDLQSVFEPFGELE 300

Query:    62 NLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHVNDYKPPKDNKY 121
              + L +D+ TG+S+G+ F+ + D      +++ +NG  +  R IRV   ND   P++ + 
Sbjct:   301 FVQLQKDE-TGRSRGYGFVQFRDPNQAREALEKMNGYDLGGRAIRVGLGNDKFTPENTQR 359

Query:   122 TDEET 126
             T  ++
Sbjct:   360 TQSQS 364


>FB|FBgn0262475 [details] [associations]
            symbol:bru-2 "bruno-2" species:7227 "Drosophila melanogaster"
            [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005575
            "cellular_component" evidence=ND] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0017148 "negative regulation of translation"
            evidence=ISA] [GO:0003723 "RNA binding" evidence=ISA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 EMBL:AE014134 GO:GO:0017148 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003723 GeneTree:ENSGT00560000076837
            RefSeq:NP_001036356.1 UniGene:Dm.412 ProteinModelPortal:Q0E8R3
            SMR:Q0E8R3 PRIDE:Q0E8R3 EnsemblMetazoa:FBtr0304856
            EnsemblMetazoa:FBtr0332233 GeneID:250811 KEGG:dme:Dmel_CG43065
            UCSC:CG31761-RE CTD:250811 FlyBase:FBgn0262475 OMA:AHVANGN
            PhylomeDB:Q0E8R3 GenomeRNAi:250811 NextBio:843510 Bgee:Q0E8R3
            Uniprot:Q0E8R3
        Length = 893

 Score = 129 (50.5 bits), Expect = 2.0e-08, Sum P(2) = 2.0e-08
 Identities = 29/85 (34%), Positives = 49/85 (57%)

Query:    18 LSSGSKTSWHDQYK-DSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKG 76
             + S S  S  DQ   D+  +FVG +P    E  +  +F Q+G +  LN++RDK+T  S+G
Sbjct:   278 MESTSPDSIKDQPDADNIKMFVGQIPKTWDETRLRQMFEQFGPVHTLNVLRDKVTSISRG 337

Query:    77 FCFICYEDQRSTVLSVDNLNGVKVL 101
              CF+ Y  +++ + + D L+ +K L
Sbjct:   338 CCFVTYYTRKAALRAQDALHNIKTL 362

 Score = 36 (17.7 bits), Expect = 2.0e-08, Sum P(2) = 2.0e-08
 Identities = 8/15 (53%), Positives = 10/15 (66%)

Query:   144 LPVKTEDIKQEKDSK 158
             L VK  D ++EKD K
Sbjct:   455 LVVKFADTQKEKDQK 469


>UNIPROTKB|E1C875 [details] [associations]
            symbol:TRA2A "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104309 EMBL:AADN02000941 EMBL:AADN02000942
            IPI:IPI00681985 ProteinModelPortal:E1C875
            Ensembl:ENSGALT00000031186 Uniprot:E1C875
        Length = 182

 Score = 128 (50.1 bits), Expect = 2.0e-08, P = 2.0e-08
 Identities = 33/103 (32%), Positives = 56/103 (54%)

Query:    38 VGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNG 97
             V GL    +E D+  +FS+YG +  +N+V D+ TG+S+GF F+ +E    +  ++++ NG
Sbjct:    22 VFGLSLYTTERDLREVFSRYGPLTGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMEHANG 81

Query:    98 VKVLSRTIRVDH--VNDYKPPKDNKYTDEETKKLRT-IGCAPG 137
             +++  R IRVD+        P    Y    T  L   +GC+ G
Sbjct:    82 MELDGRRIRVDYSITKRAHTPTPGIYMGRPTHFLGGGMGCSGG 124


>UNIPROTKB|D6RF44 [details] [associations]
            symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0043488 "regulation of mRNA stability" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005829 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 GO:GO:0048255 HOGENOM:HOG000234441 EMBL:AC124016
            HGNC:HGNC:5036 ChiTaRS:HNRNPD IPI:IPI00967562
            ProteinModelPortal:D6RF44 SMR:D6RF44 Ensembl:ENST00000515432
            ArrayExpress:D6RF44 Bgee:D6RF44 Uniprot:D6RF44
        Length = 112

 Score = 128 (50.1 bits), Expect = 2.0e-08, P = 2.0e-08
 Identities = 35/103 (33%), Positives = 56/103 (54%)

Query:    36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
             +F+GGL +D ++ D+   FS++GE+V+  L  D ITG+S+GF F+ +++  S    +D  
Sbjct:     1 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 60

Query:    96 NGVKVLSRTIRVDHVNDYKPPKDNKYTDEETKKLRTIGCAPGT 138
                K+  + I      D K  K  K T E  KK+   G +P T
Sbjct:    61 EH-KLNGKVI------DPKRAKAMK-TKEPVKKIFVGGLSPDT 95


>UNIPROTKB|Q48A10 [details] [associations]
            symbol:CPS_0338 "RNA-binding protein" species:167879
            "Colwellia psychrerythraea 34H" [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
            eggNOG:COG0724 RefSeq:YP_267104.1 ProteinModelPortal:Q48A10
            STRING:Q48A10 GeneID:3519770 KEGG:cps:CPS_0338 PATRIC:21464063
            HOGENOM:HOG000269562 BioCyc:CPSY167879:GI48-441-MONOMER
            Uniprot:Q48A10
        Length = 160

 Score = 128 (50.1 bits), Expect = 2.0e-08, P = 2.0e-08
 Identities = 35/108 (32%), Positives = 57/108 (52%)

Query:    19 SSGSKTSWHDQYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFC 78
             S+ S T   D+  D   ++VG LPY  +E  V  +FS++G + ++ L++DK TGK +GF 
Sbjct:    58 STSSNTIASDE--DVRTLYVGNLPYRANETSVRELFSEHGSVHSVRLMKDKHTGKRRGFG 115

Query:    79 FI-CYEDQRSTVLSVDNLNGVKVLSRTIRVDHVNDYKPPK--DNKYTD 123
             F+    D     +S   LN  +   RT++V    + +P +  DN   D
Sbjct:   116 FVEMASDDLDKAISA--LNDTEFQQRTLKVREAKE-RPERTEDNNQDD 160


>TIGR_CMR|CPS_0338 [details] [associations]
            symbol:CPS_0338 "RNA-binding protein" species:167879
            "Colwellia psychrerythraea 34H" [GO:0003723 "RNA binding"
            evidence=ISS] [GO:0008150 "biological_process" evidence=ND]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:CP000083 GenomeReviews:CP000083_GR eggNOG:COG0724
            RefSeq:YP_267104.1 ProteinModelPortal:Q48A10 STRING:Q48A10
            GeneID:3519770 KEGG:cps:CPS_0338 PATRIC:21464063
            HOGENOM:HOG000269562 BioCyc:CPSY167879:GI48-441-MONOMER
            Uniprot:Q48A10
        Length = 160

 Score = 128 (50.1 bits), Expect = 2.0e-08, P = 2.0e-08
 Identities = 35/108 (32%), Positives = 57/108 (52%)

Query:    19 SSGSKTSWHDQYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFC 78
             S+ S T   D+  D   ++VG LPY  +E  V  +FS++G + ++ L++DK TGK +GF 
Sbjct:    58 STSSNTIASDE--DVRTLYVGNLPYRANETSVRELFSEHGSVHSVRLMKDKHTGKRRGFG 115

Query:    79 FI-CYEDQRSTVLSVDNLNGVKVLSRTIRVDHVNDYKPPK--DNKYTD 123
             F+    D     +S   LN  +   RT++V    + +P +  DN   D
Sbjct:   116 FVEMASDDLDKAISA--LNDTEFQQRTLKVREAKE-RPERTEDNNQDD 160


>UNIPROTKB|E1P5S2 [details] [associations]
            symbol:RBM39 "RNA-binding protein 39" species:9606 "Homo
            sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
            "RNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
            "nucleolus" evidence=IDA] [GO:0005813 "centrosome" evidence=IDA]
            [GO:0015630 "microtubule cytoskeleton" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
            GO:GO:0005813 EMBL:CH471077 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL357374 TIGRFAMs:TIGR01622
            UniGene:Hs.282901 HGNC:HGNC:15923 ChiTaRS:RBM39 IPI:IPI01015916
            SMR:E1P5S2 Ensembl:ENST00000407261 UCSC:uc002xed.3 Uniprot:E1P5S2
        Length = 373

 Score = 135 (52.6 bits), Expect = 2.1e-08, P = 2.1e-08
 Identities = 25/77 (32%), Positives = 47/77 (61%)

Query:    36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
             ++VG L ++++E  +  IF  +G I ++ L+ D  TG+SKG+ FI + D      +++ L
Sbjct:    95 LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQL 154

Query:    96 NGVKVLSRTIRVDHVND 112
             NG ++  R ++V HV +
Sbjct:   155 NGFELAGRPMKVGHVTE 171


>UNIPROTKB|G3V6A5 [details] [associations]
            symbol:Hnrpd "Heterogeneous nuclear ribonucleoprotein D,
            isoform CRA_c" species:10116 "Rattus norvegicus" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 RGD:620365 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
            GeneTree:ENSGT00700000104347 KO:K13044 InterPro:IPR012956
            Pfam:PF08143 RefSeq:NP_001076008.1 UniGene:Rn.94022 GeneID:79256
            KEGG:rno:79256 CTD:79256 NextBio:614748 EMBL:CH474022
            Ensembl:ENSRNOT00000003173 Uniprot:G3V6A5
        Length = 334

 Score = 134 (52.2 bits), Expect = 2.1e-08, P = 2.1e-08
 Identities = 37/120 (30%), Positives = 62/120 (51%)

Query:    19 SSGSKTSWHDQYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFC 78
             + G+K       +D   +F+GGL +D ++ D+   FS++G++V+  L  D ITG+S+GF 
Sbjct:    61 AEGAKIDASKNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFG 120

Query:    79 FICYEDQRSTVLSVDNLNGVKVLSRTIRVDHVNDYKPPKDNKYTDEETKKLRTIGCAPGT 138
             F+ +++  S    +D     K+  + I      D K  K  K T E  KK+   G +P T
Sbjct:   121 FVLFKESESVDKVMDQKEH-KLNGKVI------DPKRAKAMK-TKEPVKKIFVGGLSPDT 172


>UNIPROTKB|H0YA96 [details] [associations]
            symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
            evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC124016 HGNC:HGNC:5036
            ChiTaRS:HNRNPD Ensembl:ENST00000514671 Uniprot:H0YA96
        Length = 210

 Score = 128 (50.1 bits), Expect = 2.2e-08, P = 2.2e-08
 Identities = 35/103 (33%), Positives = 56/103 (54%)

Query:    36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
             +F+GGL +D ++ D+   FS++GE+V+  L  D ITG+S+GF F+ +++  S    +D  
Sbjct:     3 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 62

Query:    96 NGVKVLSRTIRVDHVNDYKPPKDNKYTDEETKKLRTIGCAPGT 138
                K+  + I      D K  K  K T E  KK+   G +P T
Sbjct:    63 EH-KLNGKVI------DPKRAKAMK-TKEPVKKIFVGGLSPDT 97

 Score = 102 (41.0 bits), Expect = 4.4e-05, Sum P(2) = 4.4e-05
 Identities = 20/50 (40%), Positives = 30/50 (60%)

Query:    36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQ 85
             IFVGGL  D  E  +   F  +GE+ ++ L  D  T K +GFCFI ++++
Sbjct:    88 IFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEE 137

 Score = 37 (18.1 bits), Expect = 4.4e-05, Sum P(2) = 4.4e-05
 Identities = 10/23 (43%), Positives = 12/23 (52%)

Query:    93 DNLNGVKVLSRTIRVDHVNDYKP 115
             D  +G   +SR  R  H N YKP
Sbjct:   189 DQQSGYGKVSR--RGGHQNSYKP 209


>UNIPROTKB|F1NIM5 [details] [associations]
            symbol:RBM34 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0005730 "nucleolus"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005730 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00390000011249
            OMA:AEGHSKS EMBL:AADN02051930 IPI:IPI00589396
            Ensembl:ENSGALT00000023153 Uniprot:F1NIM5
        Length = 392

 Score = 135 (52.6 bits), Expect = 2.3e-08, P = 2.3e-08
 Identities = 30/90 (33%), Positives = 53/90 (58%)

Query:    18 LSSGSKTSWHDQYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGF 77
             + S SK S HD  +    +F+G L YD+S+  V   F+  G++V + +VRD+ +G  KGF
Sbjct:   239 VDSASKNSLHDNKRS---VFLGNLAYDISDSAVREHFADCGDVVAVRIVRDRQSGMGKGF 295

Query:    78 CFICYEDQRSTVLSVDNLNGVKVLSRTIRV 107
              ++ +E+  +  L++  LN   ++ R +RV
Sbjct:   296 GYVLFENTDAVHLAL-KLNNSDLMGRKLRV 324


>UNIPROTKB|D4A7H4 [details] [associations]
            symbol:Tia1 "Protein Tia1" species:10116 "Rattus
            norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            RGD:1305742 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            IPI:IPI00214634 ProteinModelPortal:D4A7H4
            Ensembl:ENSRNOT00000023323 Uniprot:D4A7H4
        Length = 281

 Score = 132 (51.5 bits), Expect = 2.3e-08, P = 2.3e-08
 Identities = 34/124 (27%), Positives = 63/124 (50%)

Query:     9 NIKKLSEQELSSGSKTSWHDQYKDSA---WIFVGGLPYDLSEGDVICIFSQYGEIVNLNL 65
             N +K+  +E+     T+   Q KD++    +FVG L  +++  D+   F+ +G I +  +
Sbjct:    63 NGRKIMGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARV 122

Query:    66 VRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHVNDYKPPKDNKYTDEE 125
             V+D  TGKSKG+ F+ + ++     ++  + G  +  R IR +     KPP      +  
Sbjct:   123 VKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATR-KPPAPKSTYESN 181

Query:   126 TKKL 129
             TK+L
Sbjct:   182 TKQL 185

 Score = 105 (42.0 bits), Expect = 0.00043, P = 0.00043
 Identities = 19/73 (26%), Positives = 42/73 (57%)

Query:    36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
             ++VG L  D++E  ++ +FSQ G   N  ++ D  T  +  +CF+ + + R    ++  +
Sbjct:     5 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAM 62

Query:    96 NGVKVLSRTIRVD 108
             NG K++ + ++V+
Sbjct:    63 NGRKIMGKEVKVN 75


>POMBASE|SPAC19A8.13 [details] [associations]
            symbol:usp101 "U1 snRNP-associated protein Usp101
            (predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000243
            "commitment complex" evidence=ISO] [GO:0000395 "mRNA 5'-splice site
            recognition" evidence=ISO] [GO:0003729 "mRNA binding" evidence=ISO]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005685 "U1 snRNP"
            evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0030619 "U1
            snRNA binding" evidence=ISO] [GO:0045292 "mRNA cis splicing, via
            spliceosome" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 PomBase:SPAC19A8.13
            GO:GO:0005829 EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0000166
            GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000243 eggNOG:COG0724
            GO:GO:0005685 GO:GO:0000395 KO:K11093 InterPro:IPR022023
            Pfam:PF12220 PIR:T37948 RefSeq:NP_593779.1 HSSP:P62995
            ProteinModelPortal:O13829 DIP:DIP-59803N STRING:O13829
            EnsemblFungi:SPAC19A8.13.1 GeneID:2542461 KEGG:spo:SPAC19A8.13
            HOGENOM:HOG000000970 OMA:YLPPVED OrthoDB:EOG4HMNKR NextBio:20803517
            GO:GO:0030619 Uniprot:O13829
        Length = 261

 Score = 131 (51.2 bits), Expect = 2.4e-08, P = 2.4e-08
 Identities = 29/81 (35%), Positives = 46/81 (56%)

Query:    28 DQYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRS 87
             D YK    +F+  L YD  E D+   F++YG I  + +VR+K+TGKS G+ F+ +E +R 
Sbjct:    97 DPYKT---MFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFERERD 153

Query:    88 TVLSVDNLNGVKVLSRTIRVD 108
               ++     G+ +  R I VD
Sbjct:   154 LKVAYKASAGLMLNGRRIVVD 174


>UNIPROTKB|C9JTN7 [details] [associations]
            symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
            "Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000206748
            EMBL:AC016700 HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00927286
            ProteinModelPortal:C9JTN7 SMR:C9JTN7 STRING:C9JTN7
            Ensembl:ENST00000445587 ArrayExpress:C9JTN7 Bgee:C9JTN7
            Uniprot:C9JTN7
        Length = 285

 Score = 132 (51.5 bits), Expect = 2.4e-08, P = 2.4e-08
 Identities = 34/124 (27%), Positives = 63/124 (50%)

Query:     9 NIKKLSEQELSSGSKTSWHDQYKDSA---WIFVGGLPYDLSEGDVICIFSQYGEIVNLNL 65
             N +K+  +E+     T+   Q KD++    +FVG L  +++  D+   F+ +G I +  +
Sbjct:    67 NGRKIMGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARV 126

Query:    66 VRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHVNDYKPPKDNKYTDEE 125
             V+D  TGKSKG+ F+ + ++     ++  + G  +  R IR +     KPP      +  
Sbjct:   127 VKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATR-KPPAPKSTYESN 185

Query:   126 TKKL 129
             TK+L
Sbjct:   186 TKQL 189

 Score = 105 (42.0 bits), Expect = 0.00045, P = 0.00045
 Identities = 19/73 (26%), Positives = 42/73 (57%)

Query:    36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
             ++VG L  D++E  ++ +FSQ G   N  ++ D  T  +  +CF+ + + R    ++  +
Sbjct:     9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAM 66

Query:    96 NGVKVLSRTIRVD 108
             NG K++ + ++V+
Sbjct:    67 NGRKIMGKEVKVN 79


>UNIPROTKB|Q1LZH0 [details] [associations]
            symbol:SNRNP35 "U11/U12 small nuclear ribonucleoprotein 35
            kDa protein" species:9913 "Bos taurus" [GO:0005689 "U12-type
            spliceosomal complex" evidence=IEA] [GO:0008380 "RNA splicing"
            evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008380
            GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
            eggNOG:COG0724 GO:GO:0005689 GeneTree:ENSGT00530000063750
            EMBL:BC116002 IPI:IPI00730647 RefSeq:NP_001069024.1 UniGene:Bt.5294
            ProteinModelPortal:Q1LZH0 STRING:Q1LZH0 PRIDE:Q1LZH0
            Ensembl:ENSBTAT00000010602 GeneID:512142 KEGG:bta:512142 CTD:11066
            HOGENOM:HOG000006374 HOVERGEN:HBG104583 InParanoid:Q1LZH0 KO:K13155
            OMA:QHEVFVD OrthoDB:EOG4MSD0C NextBio:20870261 Uniprot:Q1LZH0
        Length = 245

 Score = 130 (50.8 bits), Expect = 2.5e-08, P = 2.5e-08
 Identities = 29/74 (39%), Positives = 45/74 (60%)

Query:    36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
             +FV  L     E  +  +FS+YG+I  L LVRD +TG SKG+ FI Y+D+RS + +  + 
Sbjct:    53 LFVARLNLQTKEEKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKDERSLLKAYRDA 112

Query:    96 NGVKVLSRTIRVDH 109
             +G+ +    I VD+
Sbjct:   113 DGLVIDQHEIFVDY 126


>UNIPROTKB|I3LLT9 [details] [associations]
            symbol:ZCRB1 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0005689 "U12-type spliceosomal complex" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005689
            GeneTree:ENSGT00600000084414 EMBL:CU915556
            Ensembl:ENSSSCT00000027399 OMA:SINGKEM Uniprot:I3LLT9
        Length = 94

 Score = 127 (49.8 bits), Expect = 2.6e-08, P = 2.6e-08
 Identities = 28/72 (38%), Positives = 44/72 (61%)

Query:    36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
             ++V  LP+ L+  D+  IFS+YG++V + +++DK T KSKG  FI + D+ S       +
Sbjct:    12 VYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAI 71

Query:    96 NGVKV-LSRTIR 106
             N  +V LS  IR
Sbjct:    72 NNKQVSLSFPIR 83


>UNIPROTKB|Q5U259 [details] [associations]
            symbol:elavl1-b "ELAV-like protein 1-B" species:8355
            "Xenopus laevis" [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
            evidence=IDA] [GO:0005938 "cell cortex" evidence=IDA] [GO:0007369
            "gastrulation" evidence=ISS] [GO:0008266 "poly(U) RNA binding"
            evidence=ISS] [GO:0008298 "intracellular mRNA localization"
            evidence=IMP] [GO:0030529 "ribonucleoprotein complex" evidence=IPI]
            [GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0051259 "protein
            oligomerization" evidence=ISS] InterPro:IPR000504
            InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
            Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005938 GO:GO:0005634 GO:GO:0008266 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0030529
            GO:GO:0008298 GO:GO:0007369 HOVERGEN:HBG002295 KO:K13088
            TIGRFAMs:TIGR01661 EMBL:BC086269 RefSeq:NP_001088628.1
            UniGene:Xl.22886 ProteinModelPortal:Q5U259 SMR:Q5U259 PRIDE:Q5U259
            GeneID:495680 KEGG:xla:495680 CTD:495680 Xenbase:XB-GENE-865489
            Uniprot:Q5U259
        Length = 326

 Score = 133 (51.9 bits), Expect = 2.6e-08, P = 2.6e-08
 Identities = 27/93 (29%), Positives = 55/93 (59%)

Query:    18 LSSGSKTSWHDQYKDSAW---IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKS 74
             +S+G +    D  +D      + V  LP ++++ ++  +FS  GE+ +  L+RDK+ G S
Sbjct:     1 MSNGYEDHMDDVCRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHS 60

Query:    75 KGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRV 107
              G+ F+ Y + +    +++ LNG+++ S+TI+V
Sbjct:    61 LGYGFVNYLNAKDAERAINTLNGLRLQSKTIKV 93

 Score = 122 (48.0 bits), Expect = 4.2e-07, P = 4.2e-07
 Identities = 27/89 (30%), Positives = 48/89 (53%)

Query:    33 SAW-IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLS 91
             S W IF+  L  D  EG +  +F  +G + N+ ++RD  T K KGF F+   +     ++
Sbjct:   242 SGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMA 301

Query:    92 VDNLNGVKVLSRTIRVDHVNDYKPPKDNK 120
             + +LNG ++  +T++V     +K  K +K
Sbjct:   302 IASLNGYRLGDKTLQVS----FKTSKSHK 326

 Score = 104 (41.7 bits), Expect = 0.00082, P = 0.00082
 Identities = 25/94 (26%), Positives = 48/94 (51%)

Query:     6 NVKNIKKLSEQELSSGSKTSWHDQYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNL 65
             N  N  +L  + +         +  KD A +++ GLP  +++ DV  +F  +G I+N  +
Sbjct:    79 NTLNGLRLQSKTIKVSFARPSSETIKD-ANLYISGLPRTMTQKDVEDMFLPFGHIINSRV 137

Query:    66 VRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVK 99
             + D+ TG S+G  FI ++ +     ++ + NG K
Sbjct:   138 LVDQATGLSRGVAFIRFDKRSEAEEAIASFNGHK 171


>UNIPROTKB|Q56JZ7 [details] [associations]
            symbol:ZCRB1 "Zinc finger CCHC-type and RNA-binding
            motif-containing protein 1" species:9913 "Bos taurus" [GO:0005654
            "nucleoplasm" evidence=IEA] [GO:0005689 "U12-type spliceosomal
            complex" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
            [GO:0006397 "mRNA processing" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
            PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
            GO:GO:0005654 GO:GO:0008380 GO:GO:0000166 GO:GO:0046872
            GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
            Gene3D:4.10.60.10 eggNOG:COG0724 HOVERGEN:HBG107480 GO:GO:0005689
            GeneTree:ENSGT00600000084414 HSSP:Q7YZ92 EMBL:AY911330
            EMBL:BC109899 IPI:IPI00690660 RefSeq:NP_001020489.1
            UniGene:Bt.48372 ProteinModelPortal:Q56JZ7 SMR:Q56JZ7 STRING:Q56JZ7
            Ensembl:ENSBTAT00000025452 GeneID:504536 KEGG:bta:504536 CTD:85437
            HOGENOM:HOG000007632 InParanoid:Q56JZ7 KO:K13154 OMA:RXVTIMK
            OrthoDB:EOG4GXFNW NextBio:20866714 Uniprot:Q56JZ7
        Length = 217

 Score = 128 (50.1 bits), Expect = 2.6e-08, P = 2.6e-08
 Identities = 24/71 (33%), Positives = 43/71 (60%)

Query:    36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
             ++V  LP+ L+  D+  IFS+YG++V + +++DK T +SKG  FI + D+ S       +
Sbjct:    12 VYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRRSKGVAFILFLDKDSAQNCTRAI 71

Query:    96 NGVKVLSRTIR 106
             N  ++  R I+
Sbjct:    72 NNKQLFGRVIK 82


>UNIPROTKB|G3XAC6 [details] [associations]
            symbol:RBM39 "RNA-binding region (RNP1, RRM) containing 2,
            isoform CRA_f" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR006509
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 EMBL:CH471077 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL357374 TIGRFAMs:TIGR01622
            UniGene:Hs.282901 HGNC:HGNC:15923 ChiTaRS:RBM39
            ProteinModelPortal:G3XAC6 SMR:G3XAC6 Ensembl:ENST00000338163
            ArrayExpress:G3XAC6 Bgee:G3XAC6 Uniprot:G3XAC6
        Length = 423

 Score = 135 (52.6 bits), Expect = 2.6e-08, P = 2.6e-08
 Identities = 25/77 (32%), Positives = 47/77 (61%)

Query:    36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
             ++VG L ++++E  +  IF  +G I ++ L+ D  TG+SKG+ FI + D      +++ L
Sbjct:   252 LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQL 311

Query:    96 NGVKVLSRTIRVDHVND 112
             NG ++  R ++V HV +
Sbjct:   312 NGFELAGRPMKVGHVTE 328


>WB|WBGene00001368 [details] [associations]
            symbol:exc-7 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0002064 "epithelial cell development"
            evidence=IMP] [GO:0035150 "regulation of tube size" evidence=IMP]
            [GO:0016607 "nuclear speck" evidence=IDA] InterPro:IPR000504
            InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
            Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0003723
            GO:GO:0002064 eggNOG:COG0724 HOGENOM:HOG000231162
            TIGRFAMs:TIGR01661 HSSP:P26378 GeneTree:ENSGT00560000077064
            OMA:DIGESKT GO:GO:0035150 EMBL:Z36752 PIR:T21822 RefSeq:NP_496057.1
            ProteinModelPortal:Q20084 SMR:Q20084 DIP:DIP-27011N IntAct:Q20084
            MINT:MINT-1038844 STRING:Q20084 PaxDb:Q20084 EnsemblMetazoa:F35H8.5
            GeneID:174506 KEGG:cel:CELE_F35H8.5 CTD:174506 WormBase:F35H8.5
            InParanoid:Q20084 NextBio:884320 Uniprot:Q20084
        Length = 456

 Score = 135 (52.6 bits), Expect = 3.0e-08, P = 3.0e-08
 Identities = 26/83 (31%), Positives = 51/83 (61%)

Query:    36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
             + +  LP  +++ +V  +F+  GEI +  LVRDK+TG+S G+ F+ Y  +   + +V + 
Sbjct:    44 LIINYLPQGMTQEEVRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVREEDALRAVSSF 103

Query:    96 NGVKVLSRTIRVDHVNDYKPPKD 118
             NG+++ ++TI+V +    +P  D
Sbjct:   104 NGLRLQNKTIKVSYA---RPSND 123

 Score = 108 (43.1 bits), Expect = 0.00037, P = 0.00037
 Identities = 21/71 (29%), Positives = 42/71 (59%)

Query:    27 HDQYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQR 86
             +DQ K S  ++V G+P  ++  ++  IF  +G+I+   ++ D +TG SKG  F+ ++ + 
Sbjct:   122 NDQIKGSN-LYVSGIPKSMTLHELESIFRPFGQIITSRILSDNVTGLSKGVGFVRFDKKD 180

Query:    87 STVLSVDNLNG 97
                +++  LNG
Sbjct:   181 EADVAIKTLNG 191


>UNIPROTKB|H0Y8G5 [details] [associations]
            symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
            evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC124016 HGNC:HGNC:5036
            ChiTaRS:HNRNPD Ensembl:ENST00000509263 Bgee:H0Y8G5 Uniprot:H0Y8G5
        Length = 261

 Score = 130 (50.8 bits), Expect = 3.1e-08, P = 3.1e-08
 Identities = 36/105 (34%), Positives = 57/105 (54%)

Query:    35 W-IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVD 93
             W +F+GGL +D ++ D+   FS++GE+V+  L  D ITG+S+GF F+ +++  S    +D
Sbjct:    30 WKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMD 89

Query:    94 NLNGVKVLSRTIRVDHVNDYKPPKDNKYTDEETKKLRTIGCAPGT 138
                  K+  + I      D K  K  K T E  KK+   G +P T
Sbjct:    90 QKEH-KLNGKVI------DPKRAKAMK-TKEPVKKIFVGGLSPDT 126

 Score = 102 (41.0 bits), Expect = 0.00096, P = 0.00096
 Identities = 20/50 (40%), Positives = 30/50 (60%)

Query:    36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQ 85
             IFVGGL  D  E  +   F  +GE+ ++ L  D  T K +GFCFI ++++
Sbjct:   117 IFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEE 166


>UNIPROTKB|F1N9I5 [details] [associations]
            symbol:ELAVL1 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=IEA]
            [GO:0019901 "protein kinase binding" evidence=IEA] [GO:0045727
            "positive regulation of translation" evidence=IEA] [GO:0070935
            "3'-UTR-mediated mRNA stabilization" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0045727 GO:GO:0070935
            TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:RFGGPLH
            EMBL:AADN02063542 IPI:IPI00590347 ProteinModelPortal:F1N9I5
            Ensembl:ENSGALT00000001029 Uniprot:F1N9I5
        Length = 326

 Score = 132 (51.5 bits), Expect = 3.3e-08, P = 3.3e-08
 Identities = 23/74 (31%), Positives = 47/74 (63%)

Query:    36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
             + V  LP ++++ ++  +FS  GE+ +  L+RDK+ G S G+ F+ Y   +    +++ L
Sbjct:    22 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTL 81

Query:    96 NGVKVLSRTIRVDH 109
             NG+++ S+TI+V +
Sbjct:    82 NGLRLQSKTIKVSY 95

 Score = 118 (46.6 bits), Expect = 2.3e-06, P = 2.3e-06
 Identities = 24/69 (34%), Positives = 43/69 (62%)

Query:    31 KDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVL 90
             KD A +++ GLP  +++ DV  +FS++G I+N  ++ D+ TG S+G  FI ++ +     
Sbjct:   104 KD-ANLYISGLPRSMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEE 162

Query:    91 SVDNLNGVK 99
             ++ N NG K
Sbjct:   163 AITNFNGHK 171

 Score = 115 (45.5 bits), Expect = 1.5e-05, P = 1.5e-05
 Identities = 26/89 (29%), Positives = 47/89 (52%)

Query:    33 SAW-IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLS 91
             S W IF+  L  D  EG +  +F  +G + N+ ++RD  T K KGF F+   +     ++
Sbjct:   242 SGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMA 301

Query:    92 VDNLNGVKVLSRTIRVDHVNDYKPPKDNK 120
             + +LNG ++  + ++V     +K  K +K
Sbjct:   302 IASLNGYRLGDKILQVS----FKTNKSHK 326


>UNIPROTKB|Q3ZCE2 [details] [associations]
            symbol:ELAVL1 "ELAV (Embryonic lethal, abnormal vision,
            Drosophila)-like 1 (Hu antigen R)" species:9913 "Bos taurus"
            [GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=IEA]
            [GO:0045727 "positive regulation of translation" evidence=IEA]
            [GO:0019901 "protein kinase binding" evidence=IEA] [GO:0017091
            "AU-rich element binding" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
            Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0017091 GO:GO:0045727 eggNOG:COG0724 GO:GO:0070935
            HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
            OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064
            OMA:RFGGPLH EMBL:DAAA02019508 EMBL:DAAA02019509 EMBL:BC102495
            IPI:IPI00703347 RefSeq:NP_001069922.1 UniGene:Bt.49576 SMR:Q3ZCE2
            STRING:Q3ZCE2 Ensembl:ENSBTAT00000000805 GeneID:617316
            KEGG:bta:617316 InParanoid:Q3ZCE2 NextBio:20900599 Uniprot:Q3ZCE2
        Length = 326

 Score = 132 (51.5 bits), Expect = 3.3e-08, P = 3.3e-08
 Identities = 23/74 (31%), Positives = 47/74 (63%)

Query:    36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
             + V  LP ++++ ++  +FS  GE+ +  L+RDK+ G S G+ F+ Y   +    +++ L
Sbjct:    22 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTL 81

Query:    96 NGVKVLSRTIRVDH 109
             NG+++ S+TI+V +
Sbjct:    82 NGLRLQSKTIKVSY 95

 Score = 115 (45.5 bits), Expect = 1.5e-05, P = 1.5e-05
 Identities = 26/89 (29%), Positives = 47/89 (52%)

Query:    33 SAW-IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLS 91
             S W IF+  L  D  EG +  +F  +G + N+ ++RD  T K KGF F+   +     ++
Sbjct:   242 SGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMA 301

Query:    92 VDNLNGVKVLSRTIRVDHVNDYKPPKDNK 120
             + +LNG ++  + ++V     +K  K +K
Sbjct:   302 IASLNGYRLGDKILQVS----FKTNKSHK 326

 Score = 114 (45.2 bits), Expect = 2.2e-05, P = 2.2e-05
 Identities = 23/69 (33%), Positives = 44/69 (63%)

Query:    31 KDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVL 90
             KD A +++ GLP ++++ DV  +FS++G I+N  ++ D+ TG S+G  FI ++ +     
Sbjct:   104 KD-ANLYISGLPRNMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEE 162

Query:    91 SVDNLNGVK 99
             ++ + NG K
Sbjct:   163 AITSFNGHK 171


>UNIPROTKB|Q15717 [details] [associations]
            symbol:ELAVL1 "ELAV-like protein 1" species:9606 "Homo
            sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0070935
            "3'-UTR-mediated mRNA stabilization" evidence=IDA;IMP] [GO:0048255
            "mRNA stabilization" evidence=IDA;IMP] [GO:0005737 "cytoplasm"
            evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0017091
            "AU-rich element binding" evidence=IDA] [GO:0005515 "protein
            binding" evidence=IPI] [GO:0003723 "RNA binding" evidence=IDA]
            [GO:0019901 "protein kinase binding" evidence=IPI] [GO:0035925
            "mRNA 3'-UTR AU-rich region binding" evidence=IDA] [GO:0045727
            "positive regulation of translation" evidence=IDA] [GO:0003729
            "mRNA binding" evidence=TAS] [GO:0007275 "multicellular organismal
            development" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
            [GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene expression"
            evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
            [GO:0016071 "mRNA metabolic process" evidence=TAS]
            Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR000504
            InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
            Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
            GO:GO:0007275 GO:GO:0005829 GO:GO:0010467 GO:GO:0016071
            GO:GO:0005654 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
            GO:GO:0017091 EMBL:CH471139 GO:GO:0045727 eggNOG:COG0724
            GO:GO:0070935 HOVERGEN:HBG002295 EMBL:U38175 EMBL:BT009793
            EMBL:BC003376 IPI:IPI00940851 RefSeq:NP_001410.2 UniGene:Hs.184492
            UniGene:Hs.713744 PDB:3HI9 PDB:4ED5 PDB:4EGL PDB:4FXV PDBsum:3HI9
            PDBsum:4ED5 PDBsum:4EGL PDBsum:4FXV ProteinModelPortal:Q15717
            SMR:Q15717 IntAct:Q15717 MINT:MINT-5001300 STRING:Q15717
            PhosphoSite:Q15717 DMDM:20981691 PaxDb:Q15717 PeptideAtlas:Q15717
            PRIDE:Q15717 DNASU:1994 Ensembl:ENST00000407627 GeneID:1994
            KEGG:hsa:1994 UCSC:uc002mjb.3 CTD:1994 GeneCards:GC19M008023
            HGNC:HGNC:3312 HPA:CAB005256 MIM:603466 neXtProt:NX_Q15717
            PharmGKB:PA27740 HOGENOM:HOG000231162 InParanoid:Q15717 KO:K13088
            OrthoDB:EOG4Z8XWZ PhylomeDB:Q15717 BindingDB:Q15717
            ChEMBL:CHEMBL1250379 EvolutionaryTrace:Q15717 GenomeRNAi:1994
            NextBio:8063 ArrayExpress:Q15717 Bgee:Q15717 CleanEx:HS_ELAVL1
            Genevestigator:Q15717 GermOnline:ENSG00000066044 TIGRFAMs:TIGR01661
            Uniprot:Q15717
        Length = 326

 Score = 132 (51.5 bits), Expect = 3.3e-08, P = 3.3e-08
 Identities = 23/74 (31%), Positives = 47/74 (63%)

Query:    36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
             + V  LP ++++ ++  +FS  GE+ +  L+RDK+ G S G+ F+ Y   +    +++ L
Sbjct:    22 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTL 81

Query:    96 NGVKVLSRTIRVDH 109
             NG+++ S+TI+V +
Sbjct:    82 NGLRLQSKTIKVSY 95

 Score = 115 (45.5 bits), Expect = 1.5e-05, P = 1.5e-05
 Identities = 26/89 (29%), Positives = 47/89 (52%)

Query:    33 SAW-IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLS 91
             S W IF+  L  D  EG +  +F  +G + N+ ++RD  T K KGF F+   +     ++
Sbjct:   242 SGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMA 301

Query:    92 VDNLNGVKVLSRTIRVDHVNDYKPPKDNK 120
             + +LNG ++  + ++V     +K  K +K
Sbjct:   302 IASLNGYRLGDKILQVS----FKTNKSHK 326

 Score = 112 (44.5 bits), Expect = 5.2e-05, P = 5.2e-05
 Identities = 23/69 (33%), Positives = 43/69 (62%)

Query:    31 KDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVL 90
             KD A +++ GLP  +++ DV  +FS++G I+N  ++ D+ TG S+G  FI ++ +     
Sbjct:   104 KD-ANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEE 162

Query:    91 SVDNLNGVK 99
             ++ + NG K
Sbjct:   163 AITSFNGHK 171


>UNIPROTKB|D3K5N7 [details] [associations]
            symbol:ELAVL1 "ELAV (Embryonic lethal, abnormal vision,
            Drosophila)-like 1" species:9823 "Sus scrofa" [GO:0070935
            "3'-UTR-mediated mRNA stabilization" evidence=IEA] [GO:0045727
            "positive regulation of translation" evidence=IEA] [GO:0019901
            "protein kinase binding" evidence=IEA] [GO:0017091 "AU-rich element
            binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
            InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0045727
            GO:GO:0070935 CTD:1994 KO:K13088 OrthoDB:EOG4Z8XWZ
            TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:RFGGPLH
            EMBL:CU929699 EMBL:GU373715 RefSeq:NP_001182263.1 UniGene:Ssc.4516
            ProteinModelPortal:D3K5N7 Ensembl:ENSSSCT00000014844
            GeneID:100337681 KEGG:ssc:100337681 Uniprot:D3K5N7
        Length = 326

 Score = 132 (51.5 bits), Expect = 3.3e-08, P = 3.3e-08
 Identities = 24/74 (32%), Positives = 47/74 (63%)

Query:    36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
             + V  LP ++++ ++  +FS  GEI +  L+RDK+ G S G+ F+ Y   +    +++ L
Sbjct:    22 LIVNYLPQNMTQEELRSLFSSIGEIESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTL 81

Query:    96 NGVKVLSRTIRVDH 109
             NG+++ S+TI+V +
Sbjct:    82 NGLRLQSKTIKVSY 95

 Score = 113 (44.8 bits), Expect = 3.2e-05, P = 3.2e-05
 Identities = 26/89 (29%), Positives = 47/89 (52%)

Query:    33 SAW-IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLS 91
             S W IF+  L  D  EG +  +F  +G + N+ ++RD  T K KGF F+   +     ++
Sbjct:   242 SGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEASMA 301

Query:    92 VDNLNGVKVLSRTIRVDHVNDYKPPKDNK 120
             + +LNG ++  + ++V     +K  K +K
Sbjct:   302 IASLNGYRLGDKILQVS----FKTNKSHK 326

 Score = 110 (43.8 bits), Expect = 0.00010, P = 0.00010
 Identities = 23/69 (33%), Positives = 42/69 (60%)

Query:    31 KDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVL 90
             KD A +++ GLP  +++ DV  +FS +G I+N  ++ D+ TG S+G  FI ++ +     
Sbjct:   104 KD-ANLYISGLPRTMTQKDVEDMFSPFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEE 162

Query:    91 SVDNLNGVK 99
             ++ + NG K
Sbjct:   163 AITSFNGHK 171


>DICTYBASE|DDB_G0291486 [details] [associations]
            symbol:DDB_G0291486 "putative splicing regulator"
            species:44689 "Dictyostelium discoideum" [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008150
            "biological_process" evidence=ND] [GO:0005575 "cellular_component"
            evidence=ND] InterPro:IPR000504 InterPro:IPR002343
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
            SMART:SM00360 dictyBase:DDB_G0291486 EMBL:AAFI02000177
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:NOG251494
            RefSeq:XP_635247.1 ProteinModelPortal:Q54EJ3
            EnsemblProtists:DDB0233674 GeneID:8628193 KEGG:ddi:DDB_G0291486
            InParanoid:Q54EJ3 OMA:PMGNGMN Uniprot:Q54EJ3
        Length = 489

 Score = 135 (52.6 bits), Expect = 3.3e-08, P = 3.3e-08
 Identities = 26/72 (36%), Positives = 45/72 (62%)

Query:    36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
             +FV  +P   S+ D++ +F QYG +V+  +  DK TG SKGF F+ Y++  S  L++ NL
Sbjct:   405 LFVYNIPNYFSDNDLLGLFQQYGIVVSAKVYVDKNTGVSKGFGFVSYDNPASANLAISNL 464

Query:    96 NGVKVLSRTIRV 107
             +G  +  + ++V
Sbjct:   465 HGQMMAGKKLKV 476


>UNIPROTKB|F1P6U2 [details] [associations]
            symbol:SNRNP35 "Uncharacterized protein" species:9615
            "Canis lupus familiaris" [GO:0005689 "U12-type spliceosomal
            complex" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GO:GO:0005689 GeneTree:ENSGT00530000063750 CTD:11066 KO:K13155
            OMA:QHEVFVD EMBL:AAEX03014640 RefSeq:XP_534648.2
            ProteinModelPortal:F1P6U2 Ensembl:ENSCAFT00000011983 GeneID:477450
            KEGG:cfa:477450 Uniprot:F1P6U2
        Length = 246

 Score = 129 (50.5 bits), Expect = 3.4e-08, P = 3.4e-08
 Identities = 28/74 (37%), Positives = 45/74 (60%)

Query:    36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
             +FV  L     E  +  +FS+YG+I  L LVRD +TG SKG+ FI Y+++RS + +  + 
Sbjct:    53 LFVARLNLQTKEEKLKEVFSRYGDIRRLRLVRDLVTGLSKGYAFIEYKEERSLIKAYRDA 112

Query:    96 NGVKVLSRTIRVDH 109
             +G+ +    I VD+
Sbjct:   113 DGLVIDQHEIFVDY 126


>ZFIN|ZDB-GENE-040426-1391 [details] [associations]
            symbol:tra2a "transformer-2 alpha" species:7955
            "Danio rerio" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            ZFIN:ZDB-GENE-040426-1391 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 eggNOG:COG0724 HOGENOM:HOG000276232
            GeneTree:ENSGT00700000104309 HSSP:P52298 CTD:29896
            HOVERGEN:HBG102125 KO:K12897 OMA:DRYEEYD OrthoDB:EOG4BVRW2
            EMBL:BX469899 EMBL:BC054632 IPI:IPI00510581 RefSeq:NP_956710.1
            UniGene:Dr.75585 SMR:Q7T2A0 STRING:Q7T2A0
            Ensembl:ENSDART00000008595 GeneID:393388 KEGG:dre:393388
            InParanoid:Q7T2A0 NextBio:20814435 Uniprot:Q7T2A0
        Length = 297

 Score = 131 (51.2 bits), Expect = 3.5e-08, P = 3.5e-08
 Identities = 36/116 (31%), Positives = 62/116 (53%)

Query:    14 SEQELSSGSKTSW-HDQYKDS-------------AWIFVGGLPYDLSEGDVICIFSQYGE 59
             S +   +GS++S+ HD  KDS               + V GL    +E D+  +FS+YG 
Sbjct:   101 SNRRKHAGSRSSYSHDSKKDSHNQGDARANPDPNTCLGVFGLSLYTTERDLREVFSRYGS 160

Query:    60 IVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHVNDYKP 115
             +  +N+V D+ TG+S+GF F+ +E       +++  NG+++  R IRVD+    +P
Sbjct:   161 LAGVNVVYDQRTGRSRGFAFVYFEHIDDAKEAMERANGMELDGRRIRVDYSITKRP 216


>UNIPROTKB|F1PSC4 [details] [associations]
            symbol:ELAVL1 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
            Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
            GeneTree:ENSGT00560000077064 OMA:RFGGPLH EMBL:AAEX03012469
            Ensembl:ENSCAFT00000029161 Uniprot:F1PSC4
        Length = 334

 Score = 132 (51.5 bits), Expect = 3.5e-08, P = 3.5e-08
 Identities = 23/74 (31%), Positives = 47/74 (63%)

Query:    36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
             + V  LP ++++ ++  +FS  GE+ +  L+RDK+ G S G+ F+ Y   +    +++ L
Sbjct:    30 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTL 89

Query:    96 NGVKVLSRTIRVDH 109
             NG+++ S+TI+V +
Sbjct:    90 NGLRLQSKTIKVSY 103

 Score = 115 (45.5 bits), Expect = 1.5e-05, P = 1.5e-05
 Identities = 26/89 (29%), Positives = 47/89 (52%)

Query:    33 SAW-IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLS 91
             S W IF+  L  D  EG +  +F  +G + N+ ++RD  T K KGF F+   +     ++
Sbjct:   250 SGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMA 309

Query:    92 VDNLNGVKVLSRTIRVDHVNDYKPPKDNK 120
             + +LNG ++  + ++V     +K  K +K
Sbjct:   310 IASLNGYRLGDKILQVS----FKTNKSHK 334

 Score = 112 (44.5 bits), Expect = 5.5e-05, P = 5.5e-05
 Identities = 23/69 (33%), Positives = 43/69 (62%)

Query:    31 KDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVL 90
             KD A +++ GLP  +++ DV  +FS++G I+N  ++ D+ TG S+G  FI ++ +     
Sbjct:   112 KD-ANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEE 170

Query:    91 SVDNLNGVK 99
             ++ + NG K
Sbjct:   171 AITSFNGHK 179


>RGD|1310071 [details] [associations]
            symbol:Rbm39 "RNA binding motif protein 39" species:10116
            "Rattus norvegicus" [GO:0005634 "nucleus" evidence=ISO] [GO:0005813
            "centrosome" evidence=ISO] [GO:0015630 "microtubule cytoskeleton"
            evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
            InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1310071
            GO:GO:0005634 GO:GO:0005813 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH474050 eggNOG:COG0724
            HOVERGEN:HBG057646 TIGRFAMs:TIGR01622 CTD:9584 HOGENOM:HOG000236253
            KO:K13091 OrthoDB:EOG4RJG1P IPI:IPI00555302 GeneID:100910882
            KEGG:rno:100910882 EMBL:BC091394 RefSeq:NP_001013225.1
            RefSeq:XP_003749654.1 UniGene:Rn.8555 SMR:Q5BJP4 STRING:Q5BJP4
            GeneID:362251 KEGG:rno:362251 UCSC:RGD:1310071 InParanoid:Q5BJP4
            NextBio:679201 Genevestigator:Q5BJP4 Uniprot:Q5BJP4
        Length = 524

 Score = 135 (52.6 bits), Expect = 3.7e-08, P = 3.7e-08
 Identities = 25/77 (32%), Positives = 47/77 (61%)

Query:    36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
             ++VG L ++++E  +  IF  +G I ++ L+ D  TG+SKG+ FI + D      +++ L
Sbjct:   252 LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQL 311

Query:    96 NGVKVLSRTIRVDHVND 112
             NG ++  R ++V HV +
Sbjct:   312 NGFELAGRPMKVGHVTE 328


>UNIPROTKB|F6QIA5 [details] [associations]
            symbol:RBM39 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0005813 "centrosome" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006509
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0005813 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622 OMA:AGWDTEI
            GeneTree:ENSGT00690000102089 EMBL:DAAA02036526 IPI:IPI01017797
            Ensembl:ENSBTAT00000002491 Uniprot:F6QIA5
        Length = 525

 Score = 135 (52.6 bits), Expect = 3.7e-08, P = 3.7e-08
 Identities = 25/77 (32%), Positives = 47/77 (61%)

Query:    36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
             ++VG L ++++E  +  IF  +G I ++ L+ D  TG+SKG+ FI + D      +++ L
Sbjct:   252 LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQL 311

Query:    96 NGVKVLSRTIRVDHVND 112
             NG ++  R ++V HV +
Sbjct:   312 NGFELAGRPMKVGHVTE 328


>UNIPROTKB|F2Z5I2 [details] [associations]
            symbol:RBM39 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0005813 "centrosome" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006509
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0005813 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622 OMA:AGWDTEI
            GeneTree:ENSGT00690000102089 EMBL:CU210870
            Ensembl:ENSSSCT00000007997 ArrayExpress:F2Z5I2 Uniprot:F2Z5I2
        Length = 525

 Score = 135 (52.6 bits), Expect = 3.7e-08, P = 3.7e-08
 Identities = 25/77 (32%), Positives = 47/77 (61%)

Query:    36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
             ++VG L ++++E  +  IF  +G I ++ L+ D  TG+SKG+ FI + D      +++ L
Sbjct:   252 LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQL 311

Query:    96 NGVKVLSRTIRVDHVND 112
             NG ++  R ++V HV +
Sbjct:   312 NGFELAGRPMKVGHVTE 328


>UNIPROTKB|E1BRU3 [details] [associations]
            symbol:LOC100858247 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397 "mRNA
            processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0005813 "centrosome" evidence=IEA] InterPro:IPR000504
            InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0005813 GO:GO:0000166
            GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622
            OMA:AGWDTEI GeneTree:ENSGT00690000102089 EMBL:AADN02019511
            IPI:IPI00601860 Ensembl:ENSGALT00000002354 Uniprot:E1BRU3
        Length = 529

 Score = 135 (52.6 bits), Expect = 3.8e-08, P = 3.8e-08
 Identities = 25/77 (32%), Positives = 47/77 (61%)

Query:    36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
             ++VG L ++++E  +  IF  +G I ++ L+ D  TG+SKG+ FI + D      +++ L
Sbjct:   252 LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQL 311

Query:    96 NGVKVLSRTIRVDHVND 112
             NG ++  R ++V HV +
Sbjct:   312 NGFELAGRPMKVGHVTE 328


>UNIPROTKB|E2R4L0 [details] [associations]
            symbol:RBM39 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005813 "centrosome" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0005813 GO:GO:0000166
            GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622
            CTD:9584 KO:K13091 OMA:AGWDTEI GeneTree:ENSGT00690000102089
            EMBL:AAEX03013911 RefSeq:XP_864959.2 ProteinModelPortal:E2R4L0
            SMR:E2R4L0 PRIDE:E2R4L0 Ensembl:ENSCAFT00000013241 GeneID:477216
            KEGG:cfa:477216 NextBio:20852735 Uniprot:E2R4L0
        Length = 530

 Score = 135 (52.6 bits), Expect = 3.8e-08, P = 3.8e-08
 Identities = 25/77 (32%), Positives = 47/77 (61%)

Query:    36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
             ++VG L ++++E  +  IF  +G I ++ L+ D  TG+SKG+ FI + D      +++ L
Sbjct:   252 LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQL 311

Query:    96 NGVKVLSRTIRVDHVND 112
             NG ++  R ++V HV +
Sbjct:   312 NGFELAGRPMKVGHVTE 328


>UNIPROTKB|Q14498 [details] [associations]
            symbol:RBM39 "RNA-binding protein 39" species:9606 "Homo
            sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
            "RNA binding" evidence=IEA] [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
            processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
            [GO:0016607 "nuclear speck" evidence=IEA] [GO:0005515 "protein
            binding" evidence=IPI] [GO:0005654 "nucleoplasm" evidence=TAS]
            [GO:0006396 "RNA processing" evidence=TAS] [GO:0005634 "nucleus"
            evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005813
            "centrosome" evidence=IDA] [GO:0015630 "microtubule cytoskeleton"
            evidence=IDA] InterPro:IPR000504 InterPro:IPR006509
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005813 EMBL:CH471077 GO:GO:0005654 GO:GO:0006355
            GO:GO:0008380 GO:GO:0000166 GO:GO:0016607 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0006396
            eggNOG:COG0724 EMBL:AL357374 HOVERGEN:HBG057646 TIGRFAMs:TIGR01622
            EMBL:L10910 EMBL:L10911 EMBL:AK299678 EMBL:BC131543 EMBL:BC141835
            EMBL:BC158172 IPI:IPI00163505 IPI:IPI00215801 IPI:IPI00514831
            PIR:I55595 RefSeq:NP_001229528.1 RefSeq:NP_001229529.1
            RefSeq:NP_004893.1 RefSeq:NP_909122.1 UniGene:Hs.282901 PDB:2JRS
            PDBsum:2JRS ProteinModelPortal:Q14498 SMR:Q14498 IntAct:Q14498
            MINT:MINT-5004569 STRING:Q14498 PhosphoSite:Q14498 DMDM:28201880
            PaxDb:Q14498 PRIDE:Q14498 Ensembl:ENST00000253363
            Ensembl:ENST00000361162 Ensembl:ENST00000528062 GeneID:9584
            KEGG:hsa:9584 UCSC:uc002xeb.3 UCSC:uc002xec.3 CTD:9584
            GeneCards:GC20M034291 HGNC:HGNC:15923 HPA:HPA001591 MIM:604739
            neXtProt:NX_Q14498 PharmGKB:PA34450 HOGENOM:HOG000236253
            InParanoid:Q14498 KO:K13091 OMA:AGWDTEI OrthoDB:EOG4RJG1P
            PhylomeDB:Q14498 ChiTaRS:RBM39 EvolutionaryTrace:Q14498
            GenomeRNAi:9584 NextBio:35953 ArrayExpress:Q14498 Bgee:Q14498
            CleanEx:HS_RBM39 Genevestigator:Q14498 GermOnline:ENSG00000131051
            Uniprot:Q14498
        Length = 530

 Score = 135 (52.6 bits), Expect = 3.8e-08, P = 3.8e-08
 Identities = 25/77 (32%), Positives = 47/77 (61%)

Query:    36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
             ++VG L ++++E  +  IF  +G I ++ L+ D  TG+SKG+ FI + D      +++ L
Sbjct:   252 LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQL 311

Query:    96 NGVKVLSRTIRVDHVND 112
             NG ++  R ++V HV +
Sbjct:   312 NGFELAGRPMKVGHVTE 328


>MGI|MGI:2157953 [details] [associations]
            symbol:Rbm39 "RNA binding motif protein 39" species:10090
            "Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003713
            "transcription coactivator activity" evidence=TAS] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0005634 "nucleus" evidence=TAS] [GO:0006351 "transcription,
            DNA-dependent" evidence=TAS] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
            processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:2157953
            GO:GO:0005634 GO:GO:0005813 GO:GO:0006355 GO:GO:0008380
            GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0006351
            EMBL:CH466551 GO:GO:0003723 GO:GO:0003713 eggNOG:COG0724
            EMBL:AL929404 HOVERGEN:HBG057646 TIGRFAMs:TIGR01622 CTD:9584
            HOGENOM:HOG000236253 KO:K13091 OMA:AGWDTEI OrthoDB:EOG4RJG1P
            ChiTaRS:RBM39 EMBL:AY061882 EMBL:AK147076 EMBL:BX649640
            EMBL:BC004000 EMBL:BC030493 EMBL:BC086645 IPI:IPI00127763
            IPI:IPI00223371 IPI:IPI00223372 RefSeq:NP_573505.2
            UniGene:Mm.392436 UniGene:Mm.436932 PDB:2LQ5 PDB:3S6E PDBsum:2LQ5
            PDBsum:3S6E ProteinModelPortal:Q8VH51 SMR:Q8VH51 IntAct:Q8VH51
            STRING:Q8VH51 PhosphoSite:Q8VH51 PaxDb:Q8VH51 PRIDE:Q8VH51
            Ensembl:ENSMUST00000029149 Ensembl:ENSMUST00000109587
            Ensembl:ENSMUST00000146297 GeneID:170791 KEGG:mmu:170791
            GeneTree:ENSGT00690000102089 InParanoid:Q5RJI0
            EvolutionaryTrace:Q8VH51 NextBio:370435 Bgee:Q8VH51
            CleanEx:MM_RBM39 Genevestigator:Q8VH51
            GermOnline:ENSMUSG00000027620 Uniprot:Q8VH51
        Length = 530

 Score = 135 (52.6 bits), Expect = 3.8e-08, P = 3.8e-08
 Identities = 25/77 (32%), Positives = 47/77 (61%)

Query:    36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
             ++VG L ++++E  +  IF  +G I ++ L+ D  TG+SKG+ FI + D      +++ L
Sbjct:   252 LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQL 311

Query:    96 NGVKVLSRTIRVDHVND 112
             NG ++  R ++V HV +
Sbjct:   312 NGFELAGRPMKVGHVTE 328


>UNIPROTKB|F1MA64 [details] [associations]
            symbol:Rbm39 "Protein Rbm39" species:10116 "Rattus
            norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0005813 "centrosome" evidence=IEA] [GO:0006397
            "mRNA processing" evidence=IEA] InterPro:IPR000504
            InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 RGD:1310071 GO:GO:0005634 GO:GO:0005813 GO:GO:0000166
            GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622
            KO:K13091 OMA:AGWDTEI GeneTree:ENSGT00690000102089 EMBL:AC118414
            IPI:IPI00555302 RefSeq:XP_003749653.1 ProteinModelPortal:F1MA64
            SMR:F1MA64 PRIDE:F1MA64 Ensembl:ENSRNOT00000026964 GeneID:100910882
            KEGG:rno:100910882 ArrayExpress:F1MA64 Uniprot:F1MA64
        Length = 530

 Score = 135 (52.6 bits), Expect = 3.8e-08, P = 3.8e-08
 Identities = 25/77 (32%), Positives = 47/77 (61%)

Query:    36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
             ++VG L ++++E  +  IF  +G I ++ L+ D  TG+SKG+ FI + D      +++ L
Sbjct:   252 LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQL 311

Query:    96 NGVKVLSRTIRVDHVND 112
             NG ++  R ++V HV +
Sbjct:   312 NGFELAGRPMKVGHVTE 328


>UNIPROTKB|F1MY46 [details] [associations]
            symbol:RBM23 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0006397 "mRNA processing" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0003723 EMBL:DAAA02028045 OMA:VTERLDG
            TIGRFAMs:TIGR01622 GeneTree:ENSGT00690000102089 IPI:IPI00693162
            UniGene:Bt.91499 Ensembl:ENSBTAT00000023525 Uniprot:F1MY46
        Length = 463

 Score = 134 (52.2 bits), Expect = 3.9e-08, P = 3.9e-08
 Identities = 30/102 (29%), Positives = 56/102 (54%)

Query:    36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
             ++VG L  +++E  +  I   +G+I N+ L++D  TG+SKG+ FI + D      +++ L
Sbjct:   280 LYVGSLHCNITEDMLRGILEPFGKIDNIVLMKDSETGRSKGYGFITFSDSECARRALEQL 339

Query:    96 NGVKVLSRTIRVDHVNDYKPPKDNKYTDEETKKLRTIGCAPG 137
             NG ++  R +R+ HV + +P      T  +  +   +G A G
Sbjct:   340 NGFELAGRPMRIGHVTE-RPDGGTDITFPDGDQELDLGSAGG 380


>ZFIN|ZDB-GENE-030131-6154 [details] [associations]
            symbol:hnrnpa0b "heterogeneous nuclear
            ribonucleoprotein A0b" species:7955 "Danio rerio" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-6154
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
            eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12894
            EMBL:BC066434 IPI:IPI00507638 RefSeq:NP_999871.1 UniGene:Dr.35374
            ProteinModelPortal:Q6NYW8 SMR:Q6NYW8 STRING:Q6NYW8 PRIDE:Q6NYW8
            GeneID:334222 KEGG:dre:334222 CTD:334222 InParanoid:Q6NYW8
            OrthoDB:EOG4M65KN NextBio:20810313 ArrayExpress:Q6NYW8 Bgee:Q6NYW8
            Uniprot:Q6NYW8
        Length = 314

 Score = 131 (51.2 bits), Expect = 4.0e-08, P = 4.0e-08
 Identities = 30/69 (43%), Positives = 41/69 (59%)

Query:    36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQ----RSTVLS 91
             IFVGGL  D+ E D+   FSQ+G I    ++ DK TGK +GF F+ +ED     ++ VL 
Sbjct:   101 IFVGGLKDDIEEKDLTEFFSQFGMIEKSEVITDKDTGKKRGFGFVHFEDNDSADKAVVLK 160

Query:    92 VDNLNGVKV 100
                +NG KV
Sbjct:   161 FHMINGHKV 169


>UNIPROTKB|B4DVB8 [details] [associations]
            symbol:ELAVL1 "ELAV-like protein 1" species:9606 "Homo
            sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
            "RNA binding" evidence=IEA] [GO:0006417 "regulation of translation"
            evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
            InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 HOVERGEN:HBG002295 UniGene:Hs.184492
            UniGene:Hs.713744 HGNC:HGNC:3312 HOGENOM:HOG000231162
            TIGRFAMs:TIGR01661 EMBL:AC010336 EMBL:AC008975 EMBL:AK301013
            IPI:IPI00301936 ProteinModelPortal:B4DVB8 SMR:B4DVB8 IntAct:B4DVB8
            STRING:B4DVB8 PRIDE:B4DVB8 Ensembl:ENST00000351593 OMA:RFGGPLH
            ArrayExpress:B4DVB8 Bgee:B4DVB8 Uniprot:B4DVB8
        Length = 353

 Score = 132 (51.5 bits), Expect = 4.0e-08, P = 4.0e-08
 Identities = 23/74 (31%), Positives = 47/74 (63%)

Query:    36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
             + V  LP ++++ ++  +FS  GE+ +  L+RDK+ G S G+ F+ Y   +    +++ L
Sbjct:    49 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTL 108

Query:    96 NGVKVLSRTIRVDH 109
             NG+++ S+TI+V +
Sbjct:   109 NGLRLQSKTIKVSY 122

 Score = 115 (45.5 bits), Expect = 1.7e-05, P = 1.7e-05
 Identities = 26/89 (29%), Positives = 47/89 (52%)

Query:    33 SAW-IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLS 91
             S W IF+  L  D  EG +  +F  +G + N+ ++RD  T K KGF F+   +     ++
Sbjct:   269 SGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMA 328

Query:    92 VDNLNGVKVLSRTIRVDHVNDYKPPKDNK 120
             + +LNG ++  + ++V     +K  K +K
Sbjct:   329 IASLNGYRLGDKILQVS----FKTNKSHK 353

 Score = 112 (44.5 bits), Expect = 6.0e-05, P = 6.0e-05
 Identities = 23/69 (33%), Positives = 43/69 (62%)

Query:    31 KDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVL 90
             KD A +++ GLP  +++ DV  +FS++G I+N  ++ D+ TG S+G  FI ++ +     
Sbjct:   131 KD-ANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEE 189

Query:    91 SVDNLNGVK 99
             ++ + NG K
Sbjct:   190 AITSFNGHK 198


>UNIPROTKB|A2A2V2 [details] [associations]
            symbol:RBM34 "RNA-binding protein 34" species:9606 "Homo
            sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 EMBL:AL133418 EMBL:AL732292 UniGene:Hs.535224
            HGNC:HGNC:28965 HOGENOM:HOG000060230 HOVERGEN:HBG052167
            IPI:IPI00930315 SMR:A2A2V2 STRING:A2A2V2 Ensembl:ENST00000447801
            Uniprot:A2A2V2
        Length = 408

 Score = 133 (51.9 bits), Expect = 4.0e-08, P = 4.0e-08
 Identities = 32/90 (35%), Positives = 51/90 (56%)

Query:    31 KDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVL 90
             +D   +FVG LPY + E  +   F   G I+ + +VRDK+TG  KGF ++ +E+  S  L
Sbjct:   262 RDKRSVFVGNLPYKVEESAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENTDSVHL 321

Query:    91 SVDNLNGVKVLSRTIRVDH-VNDYKPPKDN 119
             ++  LN  +++ R +RV   VN  K  + N
Sbjct:   322 AL-KLNNSELMGRKLRVMRSVNKEKFKQQN 350


>UNIPROTKB|E2R228 [details] [associations]
            symbol:E2R228 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104309 EMBL:AAEX03026350
            Ensembl:ENSCAFT00000025375 OMA:SDVEYRC Uniprot:E2R228
        Length = 149

 Score = 125 (49.1 bits), Expect = 4.2e-08, P = 4.2e-08
 Identities = 26/78 (33%), Positives = 46/78 (58%)

Query:    32 DSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLS 91
             +   +F+GGL ++ +E  +   FS +G I  + +V+D+ T +S+GFCFI + +      +
Sbjct:     4 EEGMLFLGGLNFNTNEQALEDHFSSFGPISEVVVVKDRETQRSRGFCFITFTNPEHASDA 63

Query:    92 VDNLNGVKVLSRTIRVDH 109
             +  +NG  +  R IRVDH
Sbjct:    64 MRPMNGKSLDGRQIRVDH 81


>UNIPROTKB|Q6GLB5 [details] [associations]
            symbol:elavl1 "ELAV-like protein 1" species:8364 "Xenopus
            (Silurana) tropicalis" [GO:0003730 "mRNA 3'-UTR binding"
            evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
            "cytoplasm" evidence=ISS] [GO:0005938 "cell cortex" evidence=ISS]
            [GO:0007369 "gastrulation" evidence=ISS] [GO:0008266 "poly(U) RNA
            binding" evidence=ISS] [GO:0008298 "intracellular mRNA
            localization" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
            evidence=ISS] [GO:0048255 "mRNA stabilization" evidence=ISS]
            [GO:0051259 "protein oligomerization" evidence=ISS]
            InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005938 GO:GO:0005634 GO:GO:0008266
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
            GO:GO:0030529 GO:GO:0008298 GO:GO:0007369 eggNOG:COG0724
            HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
            OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 EMBL:BC074585
            RefSeq:NP_001005461.1 UniGene:Str.2596 ProteinModelPortal:Q6GLB5
            SMR:Q6GLB5 STRING:Q6GLB5 PRIDE:Q6GLB5 GeneID:448062 KEGG:xtr:448062
            Xenbase:XB-GENE-481800 InParanoid:Q6GLB5 Uniprot:Q6GLB5
        Length = 326

 Score = 131 (51.2 bits), Expect = 4.3e-08, P = 4.3e-08
 Identities = 23/72 (31%), Positives = 47/72 (65%)

Query:    36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
             + V  LP ++++ ++  +FS  GE+ +  L+RDK+ G S G+ F+ Y + +    +++ L
Sbjct:    22 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAINTL 81

Query:    96 NGVKVLSRTIRV 107
             NG+++ S+TI+V
Sbjct:    82 NGLRLQSKTIKV 93

 Score = 120 (47.3 bits), Expect = 6.9e-07, P = 6.9e-07
 Identities = 24/76 (31%), Positives = 43/76 (56%)

Query:    33 SAW-IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLS 91
             S W IF+  L  D  EG +  +F  +G + N+ ++RD  T K KGF F+   +     ++
Sbjct:   242 SGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMA 301

Query:    92 VDNLNGVKVLSRTIRV 107
             + +LNG ++  +T++V
Sbjct:   302 IASLNGYRLGDKTLQV 317

 Score = 105 (42.0 bits), Expect = 0.00057, P = 0.00057
 Identities = 25/94 (26%), Positives = 48/94 (51%)

Query:     6 NVKNIKKLSEQELSSGSKTSWHDQYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNL 65
             N  N  +L  + +         +  KD A +++ GLP  +++ DV  +F  +G I+N  +
Sbjct:    79 NTLNGLRLQSKTIKVSVARPSSESIKD-ANLYISGLPRTMTQKDVEDMFLPFGRIINSRV 137

Query:    66 VRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVK 99
             + D+ TG S+G  FI ++ +     ++ + NG K
Sbjct:   138 LVDQATGLSRGVAFIRFDKRSEAEEAIASFNGHK 171


>UNIPROTKB|Q800W4 [details] [associations]
            symbol:TIA1 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
            evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=IEA]
            [GO:0017148 "negative regulation of translation" evidence=IEA]
            [GO:0042036 "negative regulation of cytokine biosynthetic process"
            evidence=IEA] [GO:0048024 "regulation of mRNA splicing, via
            spliceosome" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
            GO:GO:0005737 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0017091 GO:GO:0042036 GO:GO:0048024 eggNOG:COG0724
            HSSP:P11940 GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748
            KO:K13201 CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 OMA:TSAPWMG
            UniGene:Gga.12064 UniGene:Gga.8269 EMBL:AADN02059907
            EMBL:AADN02059908 EMBL:AADN02059909 EMBL:AY189903 IPI:IPI00577572
            RefSeq:NP_001244132.1 SMR:Q800W4 STRING:Q800W4
            Ensembl:ENSGALT00000022506 GeneID:771327 KEGG:gga:771327
            InParanoid:Q800W4 NextBio:20921528 Uniprot:Q800W4
        Length = 372

 Score = 132 (51.5 bits), Expect = 4.4e-08, P = 4.4e-08
 Identities = 34/124 (27%), Positives = 63/124 (50%)

Query:     9 NIKKLSEQELSSGSKTSWHDQYKDSA---WIFVGGLPYDLSEGDVICIFSQYGEIVNLNL 65
             N +K+  +E+     T+   Q KD++    +FVG L  +++  D+   F+ +G I +  +
Sbjct:    67 NGRKIMGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARV 126

Query:    66 VRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHVNDYKPPKDNKYTDEE 125
             V+D  TGKSKG+ F+ + ++     ++  + G  +  R IR +     KPP      +  
Sbjct:   127 VKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATR-KPPAPKSTYESN 185

Query:   126 TKKL 129
             TK+L
Sbjct:   186 TKQL 189


>UNIPROTKB|P42696 [details] [associations]
            symbol:RBM34 "RNA-binding protein 34" species:9606 "Homo
            sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
            "RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
            EMBL:AL133418 eggNOG:COG0724 EMBL:D38491 EMBL:AK292362
            EMBL:AL732292 EMBL:BC029451 IPI:IPI00181617 IPI:IPI00930357
            RefSeq:NP_001155005.1 RefSeq:NP_055829.2 UniGene:Hs.535224
            ProteinModelPortal:P42696 SMR:P42696 IntAct:P42696 STRING:P42696
            PhosphoSite:P42696 DMDM:57013870 SWISS-2DPAGE:P42696 PaxDb:P42696
            PRIDE:P42696 DNASU:23029 Ensembl:ENST00000366606
            Ensembl:ENST00000408888 GeneID:23029 KEGG:hsa:23029 UCSC:uc001hwn.3
            UCSC:uc010pxp.1 CTD:23029 GeneCards:GC01M235294 HGNC:HGNC:28965
            HPA:HPA028606 neXtProt:NX_P42696 PharmGKB:PA142671094
            HOGENOM:HOG000060230 HOVERGEN:HBG052167 InParanoid:P42696
            OMA:AEGHSKS OrthoDB:EOG46DM2Z PhylomeDB:P42696 GenomeRNAi:23029
            NextBio:44002 ArrayExpress:P42696 Bgee:P42696 CleanEx:HS_RBM34
            Genevestigator:P42696 GermOnline:ENSG00000188739 Uniprot:P42696
        Length = 430

 Score = 133 (51.9 bits), Expect = 4.4e-08, P = 4.4e-08
 Identities = 32/90 (35%), Positives = 51/90 (56%)

Query:    31 KDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVL 90
             +D   +FVG LPY + E  +   F   G I+ + +VRDK+TG  KGF ++ +E+  S  L
Sbjct:   284 RDKRSVFVGNLPYKVEESAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENTDSVHL 343

Query:    91 SVDNLNGVKVLSRTIRVDH-VNDYKPPKDN 119
             ++  LN  +++ R +RV   VN  K  + N
Sbjct:   344 AL-KLNNSELMGRKLRVMRSVNKEKFKQQN 372


>RGD|1305742 [details] [associations]
            symbol:Tia1 "TIA1 cytotoxic granule-associated RNA binding
            protein" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO]
            [GO:0005737 "cytoplasm" evidence=ISO] [GO:0010494 "cytoplasmic
            stress granule" evidence=IEA;ISO] [GO:0017091 "AU-rich element
            binding" evidence=IEA;ISO] [GO:0017148 "negative regulation of
            translation" evidence=IEA;ISO] [GO:0042036 "negative regulation of
            cytokine biosynthetic process" evidence=IEA;ISO] [GO:0048024
            "regulation of mRNA splicing, via spliceosome" evidence=IEA;ISO]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 RGD:1305742 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 EMBL:CH473957 eggNOG:COG0724
            GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
            CTD:7072 HOVERGEN:HBG105006 EMBL:BC087064 IPI:IPI00563419
            RefSeq:NP_001012096.1 UniGene:Rn.198158 SMR:Q5PQR7 STRING:Q5PQR7
            Ensembl:ENSRNOT00000023103 GeneID:312510 KEGG:rno:312510
            UCSC:RGD:1305742 NextBio:664964 Genevestigator:Q5PQR7
            Uniprot:Q5PQR7
        Length = 375

 Score = 132 (51.5 bits), Expect = 4.5e-08, P = 4.5e-08
 Identities = 34/124 (27%), Positives = 63/124 (50%)

Query:     9 NIKKLSEQELSSGSKTSWHDQYKDSA---WIFVGGLPYDLSEGDVICIFSQYGEIVNLNL 65
             N +K+  +E+     T+   Q KD++    +FVG L  +++  D+   F+ +G I +  +
Sbjct:    67 NGRKIMGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARV 126

Query:    66 VRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHVNDYKPPKDNKYTDEE 125
             V+D  TGKSKG+ F+ + ++     ++  + G  +  R IR +     KPP      +  
Sbjct:   127 VKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATR-KPPAPKSTYESN 185

Query:   126 TKKL 129
             TK+L
Sbjct:   186 TKQL 189

 Score = 105 (42.0 bits), Expect = 0.00073, P = 0.00073
 Identities = 19/73 (26%), Positives = 42/73 (57%)

Query:    36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
             ++VG L  D++E  ++ +FSQ G   N  ++ D  T  +  +CF+ + + R    ++  +
Sbjct:     9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAM 66

Query:    96 NGVKVLSRTIRVD 108
             NG K++ + ++V+
Sbjct:    67 NGRKIMGKEVKVN 79


>ZFIN|ZDB-GENE-030131-1506 [details] [associations]
            symbol:tia1 "cytotoxic granule-associated RNA
            binding protein 1" species:7955 "Danio rerio" [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 ZFIN:ZDB-GENE-030131-1506 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 HSSP:P11940
            GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
            CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 OMA:WAVEPGQ
            EMBL:CT027545 EMBL:AL928954 EMBL:BC045368 IPI:IPI00511851
            RefSeq:NP_997793.1 UniGene:Dr.159520 SMR:Q7ZVY0
            Ensembl:ENSDART00000074400 GeneID:793165 KEGG:dre:793165
            InParanoid:Q7ZVY0 NextBio:20931339 Uniprot:Q7ZVY0
        Length = 386

 Score = 132 (51.5 bits), Expect = 4.7e-08, P = 4.7e-08
 Identities = 35/124 (28%), Positives = 62/124 (50%)

Query:     9 NIKKLSEQELSSGSKTSWHDQYKDSA---WIFVGGLPYDLSEGDVICIFSQYGEIVNLNL 65
             N +K+  +E+     TS   Q KD++    +FVG L  +++  D+   F+ +G I +  +
Sbjct:    68 NGRKIMGKEVKVNWATSPSSQKKDTSNHFHVFVGDLSPEITTDDIRAAFAPFGRISDARV 127

Query:    66 VRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHVNDYKPPKDNKYTDEE 125
             V+D  TGKSKG+ F+ + ++     ++  + G  +  R IR +     KPP      +  
Sbjct:   128 VKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATR-KPPAPKATYETN 186

Query:   126 TKKL 129
             TK L
Sbjct:   187 TKHL 190


>UNIPROTKB|A5D9H5 [details] [associations]
            symbol:HNRPD "Heterogeneous nuclear ribonucleoprotein D"
            species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein complex"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
            eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295
            GeneTree:ENSGT00700000104347 KO:K13044 CTD:3184 InterPro:IPR012956
            Pfam:PF08143 EMBL:DAAA02018245 EMBL:BT030594 IPI:IPI00905408
            RefSeq:NP_001091533.1 UniGene:Bt.52882 SMR:A5D9H5 STRING:A5D9H5
            Ensembl:ENSBTAT00000056365 GeneID:527471 KEGG:bta:527471
            NextBio:20874604 Uniprot:A5D9H5
        Length = 306

 Score = 130 (50.8 bits), Expect = 4.8e-08, P = 4.8e-08
 Identities = 36/105 (34%), Positives = 57/105 (54%)

Query:    35 W-IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVD 93
             W +F+GGL +D ++ D+   FS++GE+V+  L  D ITG+S+GF F+ +++  S    +D
Sbjct:    97 WKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMD 156

Query:    94 NLNGVKVLSRTIRVDHVNDYKPPKDNKYTDEETKKLRTIGCAPGT 138
                  K+  + I      D K  K  K T E  KK+   G +P T
Sbjct:   157 QKEH-KLNGKVI------DPKRAKAMK-TKEPVKKIFVGGLSPDT 193

 Score = 102 (41.0 bits), Expect = 0.00023, Sum P(2) = 0.00023
 Identities = 20/50 (40%), Positives = 30/50 (60%)

Query:    36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQ 85
             IFVGGL  D  E  +   F  +GE+ ++ L  D  T K +GFCFI ++++
Sbjct:   184 IFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEE 233

 Score = 37 (18.1 bits), Expect = 0.00023, Sum P(2) = 0.00023
 Identities = 10/23 (43%), Positives = 12/23 (52%)

Query:    93 DNLNGVKVLSRTIRVDHVNDYKP 115
             D  +G   +SR  R  H N YKP
Sbjct:   285 DQQSGYGKVSR--RGGHQNSYKP 305


>ZFIN|ZDB-GENE-050327-97 [details] [associations]
            symbol:rbm39b "RNA binding motif protein 39b"
            species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-050327-97
            GO:GO:0005634 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
            GO:GO:0003723 HOVERGEN:HBG057646 TIGRFAMs:TIGR01622
            HOGENOM:HOG000236253 GeneTree:ENSGT00690000102089 EMBL:CR550308
            EMBL:BC091794 IPI:IPI00498276 RefSeq:NP_001014392.1
            UniGene:Dr.76447 SMR:Q58ER0 Ensembl:ENSDART00000061328
            GeneID:541556 KEGG:dre:541556 CTD:541556 InParanoid:Q58ER0
            OMA:NCLASST NextBio:20879330 Uniprot:Q58ER0
        Length = 539

 Score = 134 (52.2 bits), Expect = 5.0e-08, P = 5.0e-08
 Identities = 30/104 (28%), Positives = 56/104 (53%)

Query:    36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
             ++VG L ++++E  +  IF  +G+I  + L+ D  TG+SKG+ FI + D      +++ L
Sbjct:   266 LYVGSLHFNITEDMLRGIFEPFGKIEGIQLMMDSETGRSKGYGFISFADAECAKKALEQL 325

Query:    96 NGVKVLSRTIRVDHVNDYKPPKD-NKYTDEETKKLRTIGCAPGT 138
             NG ++  R ++V HV +       + + D +  +L   G   GT
Sbjct:   326 NGFELAGRPMKVGHVTERSDASSASSFLDND--ELERTGIDLGT 367


>UNIPROTKB|Q5ZIH1 [details] [associations]
            symbol:HNRNPD "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0030529 "ribonucleoprotein
            complex" evidence=IEA] [GO:0042162 "telomeric DNA binding"
            evidence=IEA] [GO:0043488 "regulation of mRNA stability"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0043488 GO:GO:0042162
            eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295
            UniGene:Gga.4605 GeneTree:ENSGT00700000104347 KO:K13044
            OrthoDB:EOG49W2FZ CTD:3184 OMA:PNQNWNQ EMBL:AADN02009040
            EMBL:AJ720813 IPI:IPI00597667 RefSeq:NP_001026314.1 SMR:Q5ZIH1
            STRING:Q5ZIH1 Ensembl:ENSGALT00000018234 GeneID:422602
            KEGG:gga:422602 InParanoid:Q5ZIH1 NextBio:20825212 Uniprot:Q5ZIH1
        Length = 257

 Score = 128 (50.1 bits), Expect = 5.0e-08, P = 5.0e-08
 Identities = 35/103 (33%), Positives = 56/103 (54%)

Query:    36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
             +F+GGL +D ++ D+   FS++GE+V+  L  D ITG+S+GF F+ +++  S    +D  
Sbjct:     1 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 60

Query:    96 NGVKVLSRTIRVDHVNDYKPPKDNKYTDEETKKLRTIGCAPGT 138
                K+  + I      D K  K  K T E  KK+   G +P T
Sbjct:    61 EH-KLNGKVI------DPKRAKAMK-TKEPVKKIFVGGLSPDT 95

 Score = 103 (41.3 bits), Expect = 0.00069, P = 0.00069
 Identities = 20/50 (40%), Positives = 30/50 (60%)

Query:    36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQ 85
             IFVGGL  D  E  +   F  +GE+ ++ L  D  T K +GFCFI ++++
Sbjct:    86 IFVGGLSPDTPEEKIREYFGAFGEVESIELPMDNKTNKRRGFCFITFKEE 135


>UNIPROTKB|F1NCW4 [details] [associations]
            symbol:HNRNPD "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0030529 "ribonucleoprotein
            complex" evidence=IEA] [GO:0042162 "telomeric DNA binding"
            evidence=IEA] [GO:0043488 "regulation of mRNA stability"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0043488 GO:GO:0042162
            GeneTree:ENSGT00700000104347 OMA:PNQNWNQ EMBL:AADN02009040
            IPI:IPI00819680 Ensembl:ENSGALT00000038011 ArrayExpress:F1NCW4
            Uniprot:F1NCW4
        Length = 258

 Score = 128 (50.1 bits), Expect = 5.1e-08, P = 5.1e-08
 Identities = 35/103 (33%), Positives = 56/103 (54%)

Query:    36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
             +F+GGL +D ++ D+   FS++GE+V+  L  D ITG+S+GF F+ +++  S    +D  
Sbjct:     2 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 61

Query:    96 NGVKVLSRTIRVDHVNDYKPPKDNKYTDEETKKLRTIGCAPGT 138
                K+  + I      D K  K  K T E  KK+   G +P T
Sbjct:    62 EH-KLNGKVI------DPKRAKAMK-TKEPVKKIFVGGLSPDT 96

 Score = 103 (41.3 bits), Expect = 0.00070, P = 0.00070
 Identities = 20/50 (40%), Positives = 30/50 (60%)

Query:    36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQ 85
             IFVGGL  D  E  +   F  +GE+ ++ L  D  T K +GFCFI ++++
Sbjct:    87 IFVGGLSPDTPEEKIREYFGAFGEVESIELPMDNKTNKRRGFCFITFKEE 136


>TAIR|locus:2019622 [details] [associations]
            symbol:GR-RBP5 "AT1G74230" species:3702 "Arabidopsis
            thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0005524
            "ATP binding" evidence=IDA] [GO:0005507 "copper ion binding"
            evidence=IDA] [GO:0010228 "vegetative to reproductive phase
            transition of meristem" evidence=RCA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005739 GO:GO:0005524
            Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005507 eggNOG:COG0724
            EMBL:AC020579 HSSP:Q14103 KO:K12741 EMBL:BT002037 EMBL:BT006315
            IPI:IPI00516639 PIR:F96770 RefSeq:NP_177563.1 UniGene:At.18152
            ProteinModelPortal:Q9C909 SMR:Q9C909 PaxDb:Q9C909 PRIDE:Q9C909
            EnsemblPlants:AT1G74230.1 GeneID:843763 KEGG:ath:AT1G74230
            GeneFarm:3954 TAIR:At1g74230 InParanoid:Q9C909 OMA:TERGSGF
            ProtClustDB:CLSN2914559 Genevestigator:Q9C909 Uniprot:Q9C909
        Length = 289

 Score = 129 (50.5 bits), Expect = 5.4e-08, P = 5.4e-08
 Identities = 30/109 (27%), Positives = 57/109 (52%)

Query:     4 LTNVKNIKKLSEQELSSGSKTSWHDQYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNL 63
             L+ V  +   +   +++ S      +   S+ IFVGG+ Y   E  +   FS+YGE+V+ 
Sbjct:     4 LSKVGRLFSQTSSHVTASSSMLQSIRCMSSSKIFVGGISYSTDEFGLREAFSKYGEVVDA 63

Query:    64 NLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHVND 112
              ++ D+ TG+S+GF F+ +        ++  L+G  +  R IRV++  +
Sbjct:    64 KIIVDRETGRSRGFAFVTFTSTEEASNAMQ-LDGQDLHGRRIRVNYATE 111


>UNIPROTKB|G4MY43 [details] [associations]
            symbol:MGG_01268 "Nuclear localization sequence binding
            protein" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
            "cellular_component" evidence=ND] [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 EMBL:CM001232 KO:K11294 RefSeq:XP_003714181.1
            ProteinModelPortal:G4MY43 EnsemblFungi:MGG_01268T0 GeneID:2679652
            KEGG:mgr:MGG_01268 Uniprot:G4MY43
        Length = 486

 Score = 133 (51.9 bits), Expect = 5.4e-08, P = 5.4e-08
 Identities = 26/88 (29%), Positives = 48/88 (54%)

Query:    32 DSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLS 91
             +S  +FVG LP+D  E  V   FS+  E+ +L L  ++ +G+ KGF ++ +        +
Sbjct:   340 ESDTLFVGNLPFDADEDSVGAFFSEVAEVKSLRLPTEQESGRRKGFGYVTFNSVEDAKSA 399

Query:    92 VDNLNGVKVLSRTIRVDHVNDYKPPKDN 119
              + LNG  +  R  R+D+    +PP+++
Sbjct:   400 FEQLNGQSINGRNCRLDYSTP-RPPRED 426


>MGI|MGI:1100851 [details] [associations]
            symbol:Elavl1 "ELAV (embryonic lethal, abnormal vision)-like
            1 (Hu antigen R)" species:10090 "Mus musculus" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO]
            [GO:0003730 "mRNA 3'-UTR binding" evidence=ISO] [GO:0005634
            "nucleus" evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=ISO]
            [GO:0006417 "regulation of translation" evidence=ISO] [GO:0017091
            "AU-rich element binding" evidence=ISO] [GO:0019901 "protein kinase
            binding" evidence=ISO] [GO:0035925 "mRNA 3'-UTR AU-rich region
            binding" evidence=ISO] [GO:0045727 "positive regulation of
            translation" evidence=ISO;IMP;IDA] [GO:0048255 "mRNA stabilization"
            evidence=ISO;IMP] [GO:0070935 "3'-UTR-mediated mRNA stabilization"
            evidence=ISO] InterPro:IPR000504 InterPro:IPR002343
            InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
            PROSITE:PS50102 SMART:SM00360 MGI:MGI:1100851 GO:GO:0005634
            GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
            GO:GO:0045727 EMBL:CH466566 eggNOG:COG0724 GO:GO:0070935
            HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
            OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 EMBL:U65735 EMBL:AK080365
            EMBL:U17595 IPI:IPI00108271 PIR:I49144 RefSeq:NP_034615.2
            UniGene:Mm.119162 HSSP:P26378 ProteinModelPortal:P70372 SMR:P70372
            DIP:DIP-46480N MINT:MINT-4094207 STRING:P70372 PhosphoSite:P70372
            PaxDb:P70372 PRIDE:P70372 Ensembl:ENSMUST00000098950 GeneID:15568
            KEGG:mmu:15568 GeneTree:ENSGT00560000077064 InParanoid:P70372
            OMA:YANRACA ChiTaRS:ELAVL1 NextBio:288542 Bgee:P70372
            Genevestigator:P70372 GermOnline:ENSMUSG00000040028 Uniprot:P70372
        Length = 326

 Score = 130 (50.8 bits), Expect = 5.5e-08, P = 5.5e-08
 Identities = 23/74 (31%), Positives = 46/74 (62%)

Query:    36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
             + V  LP ++++ ++  +FS  GE+ +  L+RDK+ G S G+ F+ Y   +    ++  L
Sbjct:    22 LIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAISTL 81

Query:    96 NGVKVLSRTIRVDH 109
             NG+++ S+TI+V +
Sbjct:    82 NGLRLQSKTIKVSY 95

 Score = 115 (45.5 bits), Expect = 1.5e-05, P = 1.5e-05
 Identities = 26/89 (29%), Positives = 47/89 (52%)

Query:    33 SAW-IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLS 91
             S W IF+  L  D  EG +  +F  +G + N+ ++RD  T K KGF F+   +     ++
Sbjct:   242 SGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMA 301

Query:    92 VDNLNGVKVLSRTIRVDHVNDYKPPKDNK 120
             + +LNG ++  + ++V     +K  K +K
Sbjct:   302 IASLNGYRLGDKILQVS----FKTNKSHK 326

 Score = 112 (44.5 bits), Expect = 5.2e-05, P = 5.2e-05
 Identities = 23/69 (33%), Positives = 43/69 (62%)

Query:    31 KDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVL 90
             KD A +++ GLP  +++ DV  +FS++G I+N  ++ D+ TG S+G  FI ++ +     
Sbjct:   104 KD-ANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEE 162

Query:    91 SVDNLNGVK 99
             ++ + NG K
Sbjct:   163 AITSFNGHK 171


>RGD|1308649 [details] [associations]
            symbol:Elavl1 "ELAV (embryonic lethal, abnormal vision,
            Drosophila)-like 1 (Hu antigen R)" species:10116 "Rattus
            norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR
            binding" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;ISO]
            [GO:0005737 "cytoplasm" evidence=ISO] [GO:0006417 "regulation of
            translation" evidence=ISO] [GO:0017091 "AU-rich element binding"
            evidence=ISO] [GO:0019901 "protein kinase binding" evidence=ISO]
            [GO:0035925 "mRNA 3'-UTR AU-rich region binding" evidence=ISO]
            [GO:0045727 "positive regulation of translation" evidence=IEA;ISO]
            [GO:0048255 "mRNA stabilization" evidence=ISO] [GO:0070935
            "3'-UTR-mediated mRNA stabilization" evidence=ISO]
            InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
            SMART:SM00360 RGD:1308649 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003730 eggNOG:COG0724 HOVERGEN:HBG002295 CTD:1994
            HOGENOM:HOG000231162 KO:K13088 OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661
            GeneTree:ENSGT00560000077064 OMA:RFGGPLH EMBL:CH474084
            EMBL:BC168972 EMBL:AB212679 IPI:IPI00869767 RefSeq:NP_001102318.1
            UniGene:Rn.216517 SMR:B5DF91 STRING:B5DF91
            Ensembl:ENSRNOT00000001415 GeneID:363854 KEGG:rno:363854
            UCSC:RGD:1308649 NextBio:684342 Genevestigator:B5DF91
            Uniprot:B5DF91
        Length = 326

 Score = 130 (50.8 bits), Expect = 5.5e-08, P = 5.5e-08
 Identities = 23/74 (31%), Positives = 46/74 (62%)

Query:    36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
             + V  LP ++++ ++  +FS  GE+ +  L+RDK+ G S G+ F+ Y   +    ++  L
Sbjct:    22 LIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAISTL 81

Query:    96 NGVKVLSRTIRVDH 109
             NG+++ S+TI+V +
Sbjct:    82 NGLRLQSKTIKVSY 95

 Score = 115 (45.5 bits), Expect = 1.5e-05, P = 1.5e-05
 Identities = 26/89 (29%), Positives = 47/89 (52%)

Query:    33 SAW-IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLS 91
             S W IF+  L  D  EG +  +F  +G + N+ ++RD  T K KGF F+   +     ++
Sbjct:   242 SGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMA 301

Query:    92 VDNLNGVKVLSRTIRVDHVNDYKPPKDNK 120
             + +LNG ++  + ++V     +K  K +K
Sbjct:   302 IASLNGYRLGDKILQVS----FKTNKSHK 326

 Score = 112 (44.5 bits), Expect = 5.2e-05, P = 5.2e-05
 Identities = 23/69 (33%), Positives = 43/69 (62%)

Query:    31 KDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVL 90
             KD A +++ GLP  +++ DV  +FS++G I+N  ++ D+ TG S+G  FI ++ +     
Sbjct:   104 KD-ANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEE 162

Query:    91 SVDNLNGVK 99
             ++ + NG K
Sbjct:   163 AITSFNGHK 171

WARNING:  HSPs involving 731 database sequences were not reported due to the
          limiting value of parameter B = 250.


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.313   0.134   0.394    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      199       162   0.00079  107 3  11 23  0.45    32
                                                     30  0.44    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  981
  No. of states in DFA:  598 (64 KB)
  Total size of DFA:  158 KB (2094 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  17.29u 0.11s 17.40t   Elapsed:  00:00:15
  Total cpu time:  17.31u 0.11s 17.42t   Elapsed:  00:00:16
  Start:  Thu Aug 15 15:02:36 2013   End:  Thu Aug 15 15:02:52 2013
WARNINGS ISSUED:  2

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