RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1078
(199 letters)
>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 80
Score = 70.7 bits (173), Expect = 3e-17
Identities = 19/75 (25%), Positives = 41/75 (54%)
Query: 34 AWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVD 93
A ++VG L D++E + FS G I+++ + RD IT +S G+ ++ ++ ++D
Sbjct: 1 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 60
Query: 94 NLNGVKVLSRTIRVD 108
+N + + +R+
Sbjct: 61 TMNFDVIKGKPVRIM 75
>d1u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 70.2 bits (171), Expect = 7e-17
Identities = 14/86 (16%), Positives = 36/86 (41%), Gaps = 6/86 (6%)
Query: 36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNL-----VRDKITGKSKGFCFICYEDQRSTVL 90
++VG +P+ ++E ++ F+ + L V + K F F+ +
Sbjct: 4 LYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDE-TT 62
Query: 91 SVDNLNGVKVLSRTIRVDHVNDYKPP 116
+G+ +++++ +DY+P
Sbjct: 63 QAMAFDGIIFQGQSLKIRRPHDYQPL 88
>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 67.3 bits (164), Expect = 1e-15
Identities = 24/87 (27%), Positives = 45/87 (51%)
Query: 31 KDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVL 90
K S ++VG L + +E + +FS+ G+I + + DK+ + GFCF+ Y +
Sbjct: 5 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAEN 64
Query: 91 SVDNLNGVKVLSRTIRVDHVNDYKPPK 117
++ +NG ++ R IR D +K +
Sbjct: 65 AMRYINGTRLDDRIIRTDWDAGFKEGR 91
>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 85
Score = 63.0 bits (153), Expect = 3e-14
Identities = 23/75 (30%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Query: 36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
++V LP +++ + IF +YG IV N++RDK+TG+ +G F+ Y + ++ L
Sbjct: 9 LYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISAL 68
Query: 96 NGVKVL--SRTIRVD 108
N V S+ + V
Sbjct: 69 NNVIPEGGSQPLSVR 83
>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 94
Score = 63.0 bits (153), Expect = 4e-14
Identities = 15/80 (18%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 31 KDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRD-KITGKSKGFCFICYEDQRSTV 89
+ ++ I V +P+ ++ ++ +FS +GE+ + L + TG +GF F+ + ++
Sbjct: 6 QTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAK 65
Query: 90 LSVDNL-NGVKVLSRTIRVD 108
+ + L + + R + ++
Sbjct: 66 KAFNALCHSTHLYGRRLVLE 85
>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 85
Score = 62.3 bits (151), Expect = 5e-14
Identities = 25/74 (33%), Positives = 42/74 (56%)
Query: 36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
+F+GGLP L++ V + + +G + NLV+D TG SKG+ F Y D T ++ L
Sbjct: 4 LFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGL 63
Query: 96 NGVKVLSRTIRVDH 109
NG+++ + + V
Sbjct: 64 NGMQLGDKKLLVQR 77
>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 114
Score = 63.1 bits (153), Expect = 5e-14
Identities = 26/97 (26%), Positives = 51/97 (52%), Gaps = 5/97 (5%)
Query: 36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
+++ LPY ++ ++ IF +YG I +R T +++G ++ YED + D+L
Sbjct: 10 LYIRNLPYKITAEEMYDIFGKYGPIRQ---IRVGNTPETRGTAYVVYEDIFDAKNACDHL 66
Query: 96 NGVKVLSRTIRVDHVNDYKPPK--DNKYTDEETKKLR 130
+G V +R + V + N + + D K +E+ K L+
Sbjct: 67 SGFNVCNRYLVVLYYNANRAFQKMDTKKKEEQLKLLK 103
>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 82
Score = 62.3 bits (151), Expect = 6e-14
Identities = 19/74 (25%), Positives = 41/74 (55%)
Query: 36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
+ V LP D+++ ++ +F G I ++RD TG S G+ F+ + + + ++ L
Sbjct: 5 LIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVL 64
Query: 96 NGVKVLSRTIRVDH 109
NG+ V ++ ++V +
Sbjct: 65 NGITVRNKRLKVSY 78
>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 86
Score = 62.0 bits (150), Expect = 1e-13
Identities = 15/72 (20%), Positives = 32/72 (44%)
Query: 36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
I V +P+ +S +++ F Y I ++ G G + +E + +V +L
Sbjct: 12 IKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDL 71
Query: 96 NGVKVLSRTIRV 107
N + SR +++
Sbjct: 72 NDRPIGSRKVKL 83
>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 77
Score = 61.1 bits (148), Expect = 1e-13
Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
+F+GGL + ++ + F Q+GE+ ++RD +T +S+GF F+ + DQ V V
Sbjct: 3 MFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAG-VDKVLAQ 61
Query: 96 NGVKVLSRTIRVD 108
+ ++ S+TI
Sbjct: 62 SRHELDSKTIDPK 74
>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor
10 {Human (Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 60.9 bits (147), Expect = 2e-13
Identities = 23/72 (31%), Positives = 44/72 (61%)
Query: 36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
+ V GL +E D+ +FS+YG I ++++V D+ + +S+GF F+ +E+ + +
Sbjct: 12 LGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERA 71
Query: 96 NGVKVLSRTIRV 107
NG+++ R IRV
Sbjct: 72 NGMELDGRRIRV 83
>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 78
Score = 60.3 bits (146), Expect = 3e-13
Identities = 16/76 (21%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
+ V L + +S+ D+ +F+++G + + D +G+S G + +E + + ++
Sbjct: 3 LLVSNLDFGVSDADIQELFAEFGTLKKAAVHYD-RSGRSLGTADVHFERKADALKAMKQY 61
Query: 96 NGVKVLSRTIRVDHVN 111
NGV + R + + V
Sbjct: 62 NGVPLDGRPMNIQLVT 77
>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 59.7 bits (144), Expect = 8e-13
Identities = 21/82 (25%), Positives = 47/82 (57%)
Query: 28 DQYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRS 87
+ A ++VGGL +SE + +F Q G +VN ++ +D++TG+ +G+ F+ + +
Sbjct: 4 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEED 63
Query: 88 TVLSVDNLNGVKVLSRTIRVDH 109
++ ++ +K+ + IRV+
Sbjct: 64 ADYAIKIMDMIKLYGKPIRVNK 85
>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 83
Score = 59.0 bits (142), Expect = 1e-12
Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 5/86 (5%)
Query: 36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLV-RDKITGKSKGFCFICYEDQRSTVLSVDN 94
IF+G L ++ E + FS +G I+ + RD TG SKG+ FI + ++ +++
Sbjct: 1 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEA 60
Query: 95 LNGVKVLSRTIRVDHVNDYKPPKDNK 120
+NG + +R I V + KD+K
Sbjct: 61 MNGQYLCNRPITVSYAF----KKDSK 82
>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins
C1/C2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 98
Score = 59.1 bits (143), Expect = 1e-12
Identities = 25/100 (25%), Positives = 50/100 (50%), Gaps = 10/100 (10%)
Query: 19 SSGSKTSWHDQYKDSAWIFVGGL-PYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGF 77
SSGS + D ++ +F+G L + + DV IFS+YG+IV ++ + GF
Sbjct: 2 SSGS-SGKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHK--------GF 52
Query: 78 CFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHVNDYKPPK 117
F+ Y ++R+ +V +G + + + ++ + K +
Sbjct: 53 AFVQYVNERNARAAVAGEDGRMIAGQVLDINLAAEPKVNR 92
>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation
factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 58.5 bits (141), Expect = 2e-12
Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 4/91 (4%)
Query: 29 QYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRST 88
+ D+A I V L D E D+ +F +G I + L +DK TG+SKGF FI + +
Sbjct: 4 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDA 63
Query: 89 VLSVDNLNGVKVLSRTIRVDHVNDYKPPKDN 119
++ ++G + V ++ P N
Sbjct: 64 ARAIAGVSGFGYDHLILNV----EWAKPSTN 90
>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 85
Score = 58.1 bits (140), Expect = 2e-12
Identities = 17/76 (22%), Positives = 32/76 (42%), Gaps = 3/76 (3%)
Query: 36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDK---ITGKSKGFCFICYEDQRSTVLSV 92
+F+ L + +E + +FS+ G I + + + K S GF F+ Y+ ++
Sbjct: 1 LFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKAL 60
Query: 93 DNLNGVKVLSRTIRVD 108
L G V + V
Sbjct: 61 KQLQGHTVDGHKLEVR 76
>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 85
Score = 57.4 bits (138), Expect = 5e-12
Identities = 24/75 (32%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
Query: 36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
++V GLP +++ ++ +FSQYG I+ ++ D++TG S+G FI ++ + ++ L
Sbjct: 9 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 68
Query: 96 NGVKVLSRT--IRVD 108
NG K T I V
Sbjct: 69 NGQKPSGATEPITVK 83
>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 89
Score = 57.4 bits (138), Expect = 5e-12
Identities = 22/73 (30%), Positives = 42/73 (57%)
Query: 36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
++VGGL ++ + + F +G+I ++ + D T K +GF F+ +E ++DN+
Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67
Query: 96 NGVKVLSRTIRVD 108
N ++ RTIRV+
Sbjct: 68 NESELFGRTIRVN 80
>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 88
Score = 56.7 bits (136), Expect = 9e-12
Identities = 25/74 (33%), Positives = 44/74 (59%)
Query: 36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
+FV + + E ++ F YGEI N++L D+ TG SKG+ + YE + + + + L
Sbjct: 10 LFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEAL 69
Query: 96 NGVKVLSRTIRVDH 109
NG +++ +TI+VD
Sbjct: 70 NGAEIMGQTIQVDW 83
>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 82
Score = 56.3 bits (135), Expect = 1e-11
Identities = 26/74 (35%), Positives = 48/74 (64%)
Query: 36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
+ V LP ++++ + +F GEI + LVRDKITG+S G+ F+ Y D + +++ L
Sbjct: 5 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 64
Query: 96 NGVKVLSRTIRVDH 109
NG+++ ++TI+V +
Sbjct: 65 NGLRLQTKTIKVSY 78
>d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein 1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 56.3 bits (135), Expect = 2e-11
Identities = 26/96 (27%), Positives = 48/96 (50%), Gaps = 3/96 (3%)
Query: 27 HDQYKDSAW--IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYED 84
H KD+ + IFVGGLPY ++ + F +G+I ++ D+ TGKS+G+ F+ D
Sbjct: 2 HGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMAD 61
Query: 85 QRSTVLSVDNLNGVKVLSRTIRVDHVNDYKPPKDNK 120
+ + + + N + + R V+ P+ +
Sbjct: 62 RAAAERACKDPNPI-IDGRKANVNLAYLGAKPRSLQ 96
>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 55.8 bits (134), Expect = 2e-11
Identities = 19/98 (19%), Positives = 44/98 (44%), Gaps = 5/98 (5%)
Query: 23 KTSWHDQYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICY 82
+ + +D+ +F L + D+ FS G++ ++ ++ D+ + +SKG ++ +
Sbjct: 8 VDNLSPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEF 67
Query: 83 EDQRSTVLSVDNLNGVKVLSRTIRVDHVNDYKPPKDNK 120
+ +S V L G ++L I V + N+
Sbjct: 68 CEIQS-VPLAIGLTGQRLLGVPIIVQASQ----AEKNR 100
>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 55.0 bits (132), Expect = 3e-11
Identities = 24/72 (33%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Query: 36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
+F+GGL +D ++ D+ FS++GE+V+ L D ITG+S+GF F+ +++ S +D
Sbjct: 2 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMD-Q 60
Query: 96 NGVKVLSRTIRV 107
K+ + I
Sbjct: 61 KEHKLNGKVIDP 72
>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 90
Score = 55.0 bits (132), Expect = 4e-11
Identities = 19/85 (22%), Positives = 43/85 (50%), Gaps = 5/85 (5%)
Query: 36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
++VG L D++E ++ +FSQ G + ++ + + +CF+ + + R ++ +
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEH--TSNDPYCFVEFYEHRDAAAALAAM 68
Query: 96 NGVKVLSRTIRVDHVNDYKPPKDNK 120
NG K+L + ++V+ P K
Sbjct: 69 NGRKILGKEVKVNWA---TTPSSQK 90
>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein
1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 55.1 bits (132), Expect = 6e-11
Identities = 24/108 (22%), Positives = 55/108 (50%), Gaps = 6/108 (5%)
Query: 13 LSEQELSSGSKTSWHDQYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITG 72
L++Q + + + + A +F+ LP + + D++ +F +G +V+ + DK T
Sbjct: 1 LTQQSIGAAGS---QKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTN 57
Query: 73 KSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVDHVNDYKPPKDNK 120
SK F F+ Y++ S ++ ++NG ++ + ++V + D+K
Sbjct: 58 LSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLK---RSKNDSK 102
>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1,
UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 84
Score = 54.3 bits (130), Expect = 6e-11
Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
+F+GGL ++ ++ + F Q+G + + ++RD T +S+GF F+ Y V + N
Sbjct: 9 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYAT-VEEVDAAMNA 67
Query: 96 NGVKVLSRTIRVDH 109
KV R +
Sbjct: 68 RPHKVDGRVVEPKR 81
>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 54.8 bits (131), Expect = 7e-11
Identities = 26/100 (26%), Positives = 43/100 (43%), Gaps = 9/100 (9%)
Query: 28 DQYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLV--------RDKITGKSKGFCF 79
D+ D++ I+V GL ++ D+ F Q G + DK TGK KG
Sbjct: 3 DEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDAT 62
Query: 80 ICYEDQRSTVLSVDNLNGVKVLSRTIRVDHVNDYKPPKDN 119
+ YED + +V+ +G ++V KPP ++
Sbjct: 63 VSYEDPPTAKAAVEWFDGKDFQGSKLKVSLARK-KPPMNS 101
>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 54.2 bits (130), Expect = 7e-11
Identities = 20/78 (25%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Query: 31 KDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVL 90
+ ++ + V GLP+ +E D+ FS +GE++ + + +D TG SKGF F+ + + + V
Sbjct: 6 QKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVK 65
Query: 91 SVDNLNGVKVLSRTIRVD 108
+ + + R
Sbjct: 66 VMSQRHMID--GRWCDCK 81
>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 75
Score = 53.6 bits (128), Expect = 9e-11
Identities = 21/74 (28%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
IFVGGL + + DV F Q+G++ + L+ DK T + +GF F+ +E + V V +
Sbjct: 2 IFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDI-VEKVCEI 60
Query: 96 NGVKVLSRTIRVDH 109
+ ++ ++ +
Sbjct: 61 HFHEINNKMVECKK 74
>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 54.0 bits (129), Expect = 9e-11
Identities = 31/89 (34%), Positives = 51/89 (57%), Gaps = 3/89 (3%)
Query: 32 DSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLS 91
D +FVGGL +D +E + +FS+YG+I + +V+D+ T +S+GF F+ +E+ +
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 92 VDNLNGVKVLSRTIRVDHVNDYKPPKDNK 120
+ +NG V R IRVD DN+
Sbjct: 64 MMAMNGKSVDGRQIRVDQA---GKSSDNR 89
>d2cqha1 d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 isoform A
{Human (Homo sapiens) [TaxId: 9606]}
Length = 80
Score = 53.9 bits (129), Expect = 9e-11
Identities = 14/75 (18%), Positives = 34/75 (45%), Gaps = 7/75 (9%)
Query: 36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
+++G L ++ D+ +F + G+ F+ Y DQ + +++ L
Sbjct: 4 LYIGNLSPAVTADDLRQLFGDRKLPL------AGQVLLKSGYAFVDYPDQNWAIRAIETL 57
Query: 96 NG-VKVLSRTIRVDH 109
+G V++ + + VD+
Sbjct: 58 SGKVELHGKIMEVDY 72
>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 81
Score = 53.6 bits (128), Expect = 1e-10
Identities = 10/73 (13%), Positives = 27/73 (36%)
Query: 36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
+++ P ++ ++ + + + S+ F +I + V+ L
Sbjct: 4 LWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKL 63
Query: 96 NGVKVLSRTIRVD 108
NG+K+ T+
Sbjct: 64 NGLKIEGYTLVTK 76
>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 96
Score = 53.9 bits (129), Expect = 1e-10
Identities = 13/85 (15%), Positives = 38/85 (44%), Gaps = 5/85 (5%)
Query: 28 DQYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRS 87
+ + + + L ++++E ++ +F EI GKSKG +I ++ +
Sbjct: 11 KKVRAARTLLAKNLSFNITEDELKEVFEDALEIRL-----VSQDGKSKGIAYIEFKSEAD 65
Query: 88 TVLSVDNLNGVKVLSRTIRVDHVND 112
+++ G ++ R++ + + +
Sbjct: 66 AEKNLEEKQGAEIDGRSVSLYYTGE 90
>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 53.0 bits (127), Expect = 1e-10
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
IFVGGL D E + F +GE+ ++ L D T K +GFCFI ++++ ++
Sbjct: 2 IFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK- 60
Query: 96 NGVKVLSRTIRV 107
V +
Sbjct: 61 KYHNVGLSKCEI 72
>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 96
Score = 53.5 bits (128), Expect = 2e-10
Identities = 17/88 (19%), Positives = 36/88 (40%), Gaps = 4/88 (4%)
Query: 36 IFVGGLPYDLSEGDVICIFSQYGEIVNL--NLVRDKITGKSKGFCFICYEDQRSTVLSVD 93
+F+GG+P +++ ++ E V K++GF F+ YE R+ ++
Sbjct: 4 LFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARR 63
Query: 94 NLNG--VKVLSRTIRVDHVNDYKPPKDN 119
L +++ I VD ++
Sbjct: 64 KLMPGRIQLWGHQIAVDWAEPEIDVDED 91
>d1jmta_ d.58.7.3 (A:) U2AF35
(35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 53.5 bits (128), Expect = 2e-10
Identities = 10/73 (13%), Positives = 27/73 (36%), Gaps = 1/73 (1%)
Query: 36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
+ + + E + +YGE+ +N+ + G ++ + + +V +L
Sbjct: 30 VEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDL 88
Query: 96 NGVKVLSRTIRVD 108
N + I +
Sbjct: 89 NNRWFNGQPIHAE 101
>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 89
Score = 52.3 bits (125), Expect = 5e-10
Identities = 21/86 (24%), Positives = 42/86 (48%), Gaps = 5/86 (5%)
Query: 33 SAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSV 92
IF+ L + + FS +G I++ +V D+ SKG+ F+ +E Q + ++
Sbjct: 8 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAI 65
Query: 93 DNLNGVKVLSRTIRVDHVNDYKPPKD 118
+ +NG+ + R + V +K K+
Sbjct: 66 EKMNGMLLNDRKVFVGR---FKSRKE 88
>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 96
Score = 51.9 bits (124), Expect = 6e-10
Identities = 16/100 (16%), Positives = 44/100 (44%), Gaps = 13/100 (13%)
Query: 9 NIKKLSEQELSSGSKTSWHDQYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRD 68
N K+L +++ + S + ++ GG+ L++ + FS +G+I+ + + +
Sbjct: 1 NTKQLRFEDVVNQSSP-------KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE 53
Query: 69 KITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVD 108
K + F+ + S ++ ++NG + ++
Sbjct: 54 KG------YSFVRFSTHESAAHAIVSVNGTTIEGHVVKCY 87
>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear ribonucleoproteins
A2/B1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 52.0 bits (124), Expect = 6e-10
Identities = 15/74 (20%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
+F+GGL ++ +E + + Q+G++ + ++RD + +S+GF F+ + V +
Sbjct: 23 LFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAE-VDAAMAA 81
Query: 96 NGVKVLSRTIRVDH 109
+ R +
Sbjct: 82 RPHSIDGRVVEPKR 95
>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 99
Score = 52.0 bits (124), Expect = 7e-10
Identities = 25/86 (29%), Positives = 37/86 (43%)
Query: 32 DSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLS 91
S +FV L Y SE D+ +FS YG + L+ D +T K KGF F+ + V +
Sbjct: 7 GSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKA 66
Query: 92 VDNLNGVKVLSRTIRVDHVNDYKPPK 117
++G R + V K
Sbjct: 67 YAEVDGQVFQGRMLHVLPSTIKKEAS 92
>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich 1,
SFRS1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 51.6 bits (123), Expect = 8e-10
Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 3/90 (3%)
Query: 20 SGSKTSWHDQYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCF 79
SG + I+VG LP D+ D+ +F +YG I +++L + F F
Sbjct: 1 SGGGVIRGPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGG---PPFAF 57
Query: 80 ICYEDQRSTVLSVDNLNGVKVLSRTIRVDH 109
+ +ED R +V +G +RV+
Sbjct: 58 VEFEDPRDAEDAVYGRDGYDYDGYRLRVEF 87
>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 52.1 bits (124), Expect = 8e-10
Identities = 33/85 (38%), Positives = 53/85 (62%)
Query: 36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
+FVG +PY+ +E + IFS+ G +V+ LV D+ TGK KG+ F Y+DQ + + ++ NL
Sbjct: 11 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 70
Query: 96 NGVKVLSRTIRVDHVNDYKPPKDNK 120
NG + R +RVD+ K ++ K
Sbjct: 71 NGREFSGRALRVDNAASEKNKEELK 95
>d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP A1,
UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 51.3 bits (122), Expect = 8e-10
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Query: 36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
IFVGG+ D E + F QYG+I + ++ D+ +GK +GF F+ ++D S +
Sbjct: 5 IFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVD-KIVIQ 63
Query: 96 NGVKVLSRTIRVD 108
V V
Sbjct: 64 KYHTVNGHNCEVR 76
>d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma
cruzi [TaxId: 5693]}
Length = 139
Score = 52.6 bits (125), Expect = 9e-10
Identities = 23/107 (21%), Positives = 54/107 (50%)
Query: 2 NPLTNVKNIKKLSEQELSSGSKTSWHDQYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIV 61
+P +++L +Q+ T + + + V +P + E + +F +YG I
Sbjct: 11 DPYGQTAQLQQLQQQQQQHIPPTQMNPEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIE 70
Query: 62 NLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVD 108
++ +V D+ T +S+G+ F+ ++ S ++ LNG +L++ ++V
Sbjct: 71 SVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVA 117
>d2cpia1 d.58.7.1 (A:101-189) E3 ubiquitin protein ligase CNOT4
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 89
Score = 51.4 bits (122), Expect = 9e-10
Identities = 15/78 (19%), Positives = 33/78 (42%), Gaps = 6/78 (7%)
Query: 36 IFVGGLPYDLSEGDVICIF---SQYGEIVNLNLVRDKITGKS---KGFCFICYEDQRSTV 89
+FV GL L++ +V+ ++G+I + + S ++ Y +
Sbjct: 11 VFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDAL 70
Query: 90 LSVDNLNGVKVLSRTIRV 107
++ +N V V RT++
Sbjct: 71 RAIQCVNNVVVDGRTLKA 88
>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 51.2 bits (122), Expect = 1e-09
Identities = 23/91 (25%), Positives = 48/91 (52%), Gaps = 6/91 (6%)
Query: 19 SSGSKTSWHDQYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFC 78
SSG+ S + + V +P+ + D+ +F Q+G+I+++ ++ ++ SKGF
Sbjct: 1 SSGNSESKSTPKR----LHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFG 54
Query: 79 FICYEDQRSTVLSVDNLNGVKVLSRTIRVDH 109
F+ +E+ + + L+G V R I V++
Sbjct: 55 FVTFENSADADRAREKLHGTVVEGRKIEVNN 85
>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 86
Score = 50.0 bits (119), Expect = 2e-09
Identities = 13/73 (17%), Positives = 26/73 (35%), Gaps = 6/73 (8%)
Query: 36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
++V L SE + F+ K + + F+ + ++ V ++ L
Sbjct: 11 LYVRNLMLSTSEEMIEKEFNNIKPGAVER------VKKIRDYAFVHFSNREDAVEAMKAL 64
Query: 96 NGVKVLSRTIRVD 108
NG + I V
Sbjct: 65 NGKVLDGSPIEVT 77
>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing
octamer-binding protein, NonO {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 49.2 bits (117), Expect = 5e-09
Identities = 19/81 (23%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
Query: 29 QYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRST 88
+ + +FVG LP D++E ++ +F +YG+ + + +DK F FI E +
Sbjct: 4 TFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKG------FGFIRLETRTLA 57
Query: 89 VLSVDNLNGVKVLSRTIRVDH 109
++ L+ + + + +RV
Sbjct: 58 EIAKVELDNMPLRGKQLRVRF 78
>d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 49.3 bits (117), Expect = 6e-09
Identities = 27/102 (26%), Positives = 42/102 (41%), Gaps = 5/102 (4%)
Query: 19 SSGSKTSWHDQYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFC 78
SSGS+ Y F+G LPYD++E + F + KGF
Sbjct: 5 SSGSRLPKSPPYT----AFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFG 60
Query: 79 FICYEDQRSTVLSVDNLNGVKVLSRTIRVDHVNDYKPPKDNK 120
+ +ED S +LS +LN + ++ IRVD + +
Sbjct: 61 YAEFEDLDS-LLSALSLNEESLGNKRIRVDVADQAQDKDSGP 101
>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 50.4 bits (119), Expect = 1e-08
Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
Query: 26 WHDQYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQ 85
+ IFVGG+ D E + F QYG+I + ++ D+ +GK +GF F+ ++D
Sbjct: 90 RPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDH 149
Query: 86 RSTVLSVDNLNGVKVLSRTIRVD 108
S V V V
Sbjct: 150 DSVDKIVI-QKYHTVNGHNCEVR 171
Score = 50.4 bits (119), Expect = 1e-08
Identities = 15/52 (28%), Positives = 30/52 (57%)
Query: 36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRS 87
+F+GGL ++ ++ + F Q+G + + ++RD T +S+GF F+ Y
Sbjct: 9 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 60
>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 108
Score = 48.1 bits (114), Expect = 3e-08
Identities = 17/93 (18%), Positives = 41/93 (44%), Gaps = 6/93 (6%)
Query: 36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
I V L Y ++ + IFS++G ++ + ++ + Y D S + +L
Sbjct: 10 IIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSL 65
Query: 96 NGVKVLSRTIRVDHVNDYKPPKDN-KYTDEETK 127
+G + + + ++ K N KY +++++
Sbjct: 66 DGQNIYNACCTL-RIDFSKLTSLNVKYNNDKSR 97
>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 47.4 bits (112), Expect = 3e-08
Identities = 11/77 (14%), Positives = 25/77 (32%), Gaps = 7/77 (9%)
Query: 32 DSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLS 91
S+ I V LP D + +V + Y + ++K F+ + +
Sbjct: 4 GSSGILVKNLPQDSNCQEVHDLLKDYDL-------KYCYVDRNKRTAFVTLLNGEQAQNA 56
Query: 92 VDNLNGVKVLSRTIRVD 108
+ + + + V
Sbjct: 57 IQMFHQYSFRGKDLIVQ 73
>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif,
single-stranded-interacting protein 2, RBMS2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 72
Score = 46.7 bits (110), Expect = 3e-08
Identities = 17/71 (23%), Positives = 37/71 (52%)
Query: 36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
+++ GL ++ D++ + YG+IV+ + DK T K KG+ F+ ++ + +V L
Sbjct: 1 LYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTAL 60
Query: 96 NGVKVLSRTIR 106
V ++ +
Sbjct: 61 KASGVQAQMAK 71
>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 46.9 bits (111), Expect = 3e-08
Identities = 16/89 (17%), Positives = 38/89 (42%), Gaps = 10/89 (11%)
Query: 32 DSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLS 91
S+ +FVG D++E ++ FSQYG++ + I + F F+ + D +
Sbjct: 4 GSSGVFVGRCTGDMTEDELREFFSQYGDV-----MDVFIPKPFRAFAFVTFADDQIAQSL 58
Query: 92 VDNLNGVKVLSRTIRVDHVNDYKPPKDNK 120
+ + ++ + + +P ++
Sbjct: 59 CG--EDLIIKGISVHISNA---EPKHNSN 82
>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 91
Score = 47.4 bits (112), Expect = 3e-08
Identities = 8/75 (10%), Positives = 30/75 (40%), Gaps = 1/75 (1%)
Query: 36 IFVGGLPYDLSEGDVICIFSQY-GEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDN 94
I++ L + + ++ + + + K +G F+ +++ S ++ +
Sbjct: 6 IYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRS 65
Query: 95 LNGVKVLSRTIRVDH 109
+ G + +R+ +
Sbjct: 66 MQGFPFYDKPMRIQY 80
>d2ghpa2 d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 75
Score = 46.4 bits (109), Expect = 4e-08
Identities = 12/75 (16%), Positives = 23/75 (30%), Gaps = 3/75 (4%)
Query: 36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
+ V LP ++ V F G I+++++ D ++
Sbjct: 3 VLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAITK--- 59
Query: 96 NGVKVLSRTIRVDHV 110
V I V H+
Sbjct: 60 THKVVGQNEIIVSHL 74
>d1wwha1 d.58.7.1 (A:169-249) Nucleoporin 35 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 81
Score = 46.5 bits (110), Expect = 5e-08
Identities = 13/74 (17%), Positives = 28/74 (37%), Gaps = 8/74 (10%)
Query: 32 DSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLS 91
D W+ V G P + ++ F+QYG I+ + + I Y+ + +
Sbjct: 3 DDTWVTVFGFPQASAS-YILLQFAQYGNILKHVMSNT------GNWMHIRYQSKLQARKA 55
Query: 92 VDNLNGVKVLSRTI 105
+ + +G +
Sbjct: 56 L-SKDGRIFGESIM 68
>d2cpya1 d.58.7.1 (A:536-638) RNA-binding protein 12 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 103
Score = 46.8 bits (110), Expect = 7e-08
Identities = 16/101 (15%), Positives = 33/101 (32%), Gaps = 1/101 (0%)
Query: 28 DQYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRS 87
D + +P+ +++ DV+ N V G+ G + ++++
Sbjct: 3 DVNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDD 62
Query: 88 TVLSVDNLNGVKVLSRTIRVDHVNDYKPPKDNKYTDEETKK 128
S L+ K+ R V V + K + K
Sbjct: 63 ARKSER-LHRKKLNGREAFVHVVTLEDMREIEKNPPAQGKS 102
>d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 46.3 bits (109), Expect = 8e-08
Identities = 15/93 (16%), Positives = 47/93 (50%)
Query: 16 QELSSGSKTSWHDQYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSK 75
+E+ S ++ + + +++ L ++E D++ +F+++ E + +TG+ +
Sbjct: 1 EEIRKIPMFSSYNPGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMR 60
Query: 76 GFCFICYEDQRSTVLSVDNLNGVKVLSRTIRVD 108
G FI + ++ ++ +NG K+ + + ++
Sbjct: 61 GQAFITFPNKEIAWQALHLVNGYKLYGKILVIE 93
>d1wg5a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H'
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 46.0 bits (108), Expect = 1e-07
Identities = 19/90 (21%), Positives = 38/90 (42%), Gaps = 2/90 (2%)
Query: 19 SSGSKTSWHDQYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFC 78
SSGS + D + ++ + GLP+ S+ +++ FS + N + G+S G
Sbjct: 2 SSGSSGNSPDT-ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEA 60
Query: 79 FICYEDQRSTVLSVDNLNGVKVLSRTIRVD 108
F+ + Q + ++ R I +
Sbjct: 61 FVQFASQEI-AEKALKKHKERIGHRYIEIF 89
>d1wexa_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein
L-like {Mouse (Mus musculus) [TaxId: 10090]}
Length = 104
Score = 45.6 bits (107), Expect = 2e-07
Identities = 17/102 (16%), Positives = 36/102 (35%), Gaps = 5/102 (4%)
Query: 19 SSGSKTSWHDQYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFC 78
SSGS S H + S + V GL + E D++ ++G I + ++ K +
Sbjct: 2 SSGSSGSHH-KVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKR----QALV 56
Query: 79 FICYEDQRSTVLSVDNLNGVKVLSRTIRVDHVNDYKPPKDNK 120
D ++ V + + ++ + +
Sbjct: 57 EFENIDSAKECVTFAADVPVYIAGQQAFFNYSTSKRITRPGN 98
>d1fjeb1 d.58.7.1 (B:1-91) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 91
Score = 45.3 bits (106), Expect = 2e-07
Identities = 18/88 (20%), Positives = 39/88 (44%), Gaps = 2/88 (2%)
Query: 21 GSKTSWHDQYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFI 80
GS + +F+G L + S ++ S+ +L +V + TG ++ F ++
Sbjct: 1 GSHMVEGSESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVR-TGTNRKFGYV 59
Query: 81 CYEDQRSTVLSVDNLNGVKVLSRTIRVD 108
+E ++ L G+KV I+++
Sbjct: 60 DFESAEDLEKAL-ELTGLKVFGNEIKLE 86
>d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E
{Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 44.6 bits (105), Expect = 3e-07
Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 8/73 (10%)
Query: 36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
++V G D++ + FS +G I D + F+ YE S +V L
Sbjct: 8 LYVYGE--DMTPTLLRGAFSPFGNI------IDLSMDPPRNCAFVTYEKMESADQAVAEL 59
Query: 96 NGVKVLSRTIRVD 108
NG +V S ++V+
Sbjct: 60 NGTQVESVQLKVN 72
>d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 98
Score = 44.0 bits (103), Expect = 6e-07
Identities = 18/85 (21%), Positives = 37/85 (43%), Gaps = 6/85 (7%)
Query: 31 KDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVL 90
+ +F+ L +D E + + Q+G++ + +V T SKG F + Q +
Sbjct: 6 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQK 65
Query: 91 SVDNLN------GVKVLSRTIRVDH 109
+ + G+K+ R ++VD
Sbjct: 66 CLAAASLEAEGGGLKLDGRQLKVDL 90
>d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H'
{Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 43.6 bits (102), Expect = 1e-06
Identities = 18/90 (20%), Positives = 32/90 (35%), Gaps = 4/90 (4%)
Query: 19 SSGSKTSWHDQYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFC 78
SSGS S Q + + GLPY +E D+ FS + G+ G
Sbjct: 2 SSGSSGS-SFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPMRVHIE--IGPDGRVTGEA 58
Query: 79 FICYEDQRSTVLSVDNLNGVKVLSRTIRVD 108
+ + V ++ + + R + +
Sbjct: 59 DVEFATHEDAVAAM-AKDKANMQHRYVELF 87
>d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9
(SFRS9) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 98
Score = 42.8 bits (100), Expect = 1e-06
Identities = 16/97 (16%), Positives = 34/97 (35%), Gaps = 11/97 (11%)
Query: 19 SSGSKTSWHDQYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFC 78
SSG + ++ + V GLP S D+ + G++ ++ +D
Sbjct: 5 SSGGPPTRRSDFR----VLVSGLPPSGSWQDLKDHMREAGDVCYADVQKDG-------MG 53
Query: 79 FICYEDQRSTVLSVDNLNGVKVLSRTIRVDHVNDYKP 115
+ Y + ++ L+ K S ++ Y
Sbjct: 54 MVEYLRKEDMEYALRKLDDTKFRSHEGETSYIRVYPE 90
>d1wi6a1 d.58.7.1 (A:69-143) Ribonucleoprotein PTB-binding 1,
Raver-1 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 75
Score = 42.2 bits (98), Expect = 2e-06
Identities = 14/73 (19%), Positives = 29/73 (39%), Gaps = 7/73 (9%)
Query: 36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
I + GLP D++ +V + S Y + K KG F+ + +++
Sbjct: 1 ILIRGLPGDVTNQEVHDLLSDYEL-------KYCFVDKYKGTAFVTLLNGEQAEAAINTF 53
Query: 96 NGVKVLSRTIRVD 108
+ ++ R + V
Sbjct: 54 HQSRLRERELSVQ 66
>d2adca1 d.58.7.1 (A:335-443) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 109
Score = 42.1 bits (98), Expect = 4e-06
Identities = 20/98 (20%), Positives = 42/98 (42%), Gaps = 8/98 (8%)
Query: 33 SAWIFVGGL-PYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLS 91
++ + V L P ++ + +F YG++ + KI K + D L+
Sbjct: 2 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRV-----KILFNKKENALVQMADGNQAQLA 56
Query: 92 VDNLNGVKVLSRTIRVD--HVNDYKPPKDNKYTDEETK 127
+ +LNG K+ + IR+ + + P++ + TK
Sbjct: 57 MSHLNGHKLHGKPIRITLSKHQNVQLPREGQEDQGLTK 94
>d1x4da1 d.58.7.1 (A:8-96) Matrin 3 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 89
Score = 41.6 bits (97), Expect = 4e-06
Identities = 10/90 (11%), Positives = 26/90 (28%), Gaps = 5/90 (5%)
Query: 29 QYKDSAWIFVGGLPYD-LSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRS 87
+ + + + ++ + +G I N + ++ F + +
Sbjct: 4 RVETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNH----LILNKINEAFIEMATTEDAQ 59
Query: 88 TVLSVDNLNGVKVLSRTIRVDHVNDYKPPK 117
+ V + +RV YK K
Sbjct: 60 AAVDYYTTTPALVFGKPVRVHLSQKYKRIK 89
>d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 99
Score = 41.4 bits (97), Expect = 5e-06
Identities = 15/71 (21%), Positives = 24/71 (33%), Gaps = 7/71 (9%)
Query: 47 EGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIR 106
D+ S++G+I L L G + + D + L+G R I
Sbjct: 33 REDLRVECSKFGQIRKLLLFDRHP----DGVASVSFRDPEEADYCIQTLDGRWFGGRQIT 88
Query: 107 V---DHVNDYK 114
D DY+
Sbjct: 89 AQAWDGTTDYQ 99
>d2ghpa3 d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 86
Score = 40.9 bits (95), Expect = 7e-06
Identities = 14/75 (18%), Positives = 31/75 (41%), Gaps = 3/75 (4%)
Query: 36 IFVGGLPYDLSEGDVI-CIFSQYGEI-VNLNLVRDKITGKSKGFCFICYEDQRSTVLSVD 93
I + L +L + +++ F +G I K + F+ +E++ S ++
Sbjct: 7 IMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERALQ 66
Query: 94 NLNGVKVLSRTIRVD 108
+N + +R I V
Sbjct: 67 -MNRSLLGNREISVS 80
>d2cq2a1 d.58.7.1 (A:25-125) Alkylation repair AlkB homolog 8,
ALKBH8 {Human (Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 41.2 bits (96), Expect = 7e-06
Identities = 14/69 (20%), Positives = 28/69 (40%), Gaps = 6/69 (8%)
Query: 33 SAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSV 92
S + GGL +S ++ + + G + L + +K + F Y + +
Sbjct: 20 SLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKP------YSFARYRTTEESKRAY 73
Query: 93 DNLNGVKVL 101
LNG +V+
Sbjct: 74 VTLNGKEVV 82
>d2adca2 d.58.7.1 (A:444-531) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 40.5 bits (94), Expect = 1e-05
Identities = 17/82 (20%), Positives = 34/82 (41%), Gaps = 5/82 (6%)
Query: 28 DQYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRS 87
+ + SA + + +P +SE D+ +FS G +V K K + I
Sbjct: 5 NIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVK----GFKFFQKDRKMALIQMGSVEE 60
Query: 88 TVLSVDNLNGVKVL-SRTIRVD 108
V ++ +L+ + + +RV
Sbjct: 61 AVQALIDLHNHDLGENHHLRVS 82
>d1o0pa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 39.2 bits (91), Expect = 3e-05
Identities = 13/73 (17%), Positives = 27/73 (36%), Gaps = 2/73 (2%)
Query: 41 LPYDLSEGDVICIFSQYGEIVNLNLVRDKITG--KSKGFCFICYEDQRSTVLSVDNLNGV 98
Y+ DV S+YG + ++ + R G F+ + ++ L G
Sbjct: 22 EEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 81
Query: 99 KVLSRTIRVDHVN 111
K +R + + +
Sbjct: 82 KFANRVVVTKYCD 94
>d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 85
Score = 38.9 bits (90), Expect = 3e-05
Identities = 16/78 (20%), Positives = 33/78 (42%), Gaps = 2/78 (2%)
Query: 36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
+++ G P D + D+ G+++N+ +R + KG F+ ++ S V
Sbjct: 9 VYIKGFPTDATLDDIKEWLEDKGQVLNIQ-MRRTLHKAFKGSIFVVFDSIESAKKFV-ET 66
Query: 96 NGVKVLSRTIRVDHVNDY 113
G K + + +DY
Sbjct: 67 PGQKYKETDLLILFKDDY 84
>d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 97
Score = 38.5 bits (89), Expect = 5e-05
Identities = 18/78 (23%), Positives = 34/78 (43%), Gaps = 8/78 (10%)
Query: 33 SAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSV 92
+ ++VGGL + S + F ++G I ++ V+ F +I YE + +
Sbjct: 17 TTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGDS------FAYIQYESLDAAQAAC 70
Query: 93 DNLNGVKV--LSRTIRVD 108
+ G + R +RVD
Sbjct: 71 AKMRGFPLGGPDRRLRVD 88
>d1whxa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 111
Score = 39.2 bits (90), Expect = 5e-05
Identities = 10/106 (9%), Positives = 31/106 (29%), Gaps = 6/106 (5%)
Query: 25 SWHDQYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYED 84
S + I LP ++ FS++G + + + + + + +
Sbjct: 2 SSGSSGRSKTVILAKNLPAGTLAAEIQETFSRFGSLGRV------LLPEGGITAIVEFLE 55
Query: 85 QRSTVLSVDNLNGVKVLSRTIRVDHVNDYKPPKDNKYTDEETKKLR 130
+ +L K + ++ + D + ++
Sbjct: 56 PLEARKAFRHLAYSKFHHVPLYLEWAPIGVFGAAPQKKDSQHEQPA 101
>d1x5oa1 d.58.7.1 (A:8-108) RNA-binding motif,
single-stranded-interacting protein 1, RBMS1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 38.2 bits (88), Expect = 7e-05
Identities = 13/79 (16%), Positives = 33/79 (41%), Gaps = 1/79 (1%)
Query: 29 QYKDSAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRST 88
Q +D +++ LP + E ++ + +G++++ + +G S+G F E
Sbjct: 14 QEQDPTNLYISNLPLSMDEQELENMLKPFGQVIS-TRILRDSSGTSRGVGFARMESTEKC 72
Query: 89 VLSVDNLNGVKVLSRTIRV 107
+ + NG + +
Sbjct: 73 EAVIGHFNGKFIKTPPGVS 91
>d3begb1 d.58.7.1 (B:121-207) Splicing factor, arginine/serine-rich
1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 87
Score = 36.8 bits (84), Expect = 2e-04
Identities = 13/76 (17%), Positives = 27/76 (35%), Gaps = 7/76 (9%)
Query: 36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
+ V GLP S D+ + G++ ++ RD + + + +V L
Sbjct: 3 VVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDG-------TGVVEFVRKEDMTYAVRKL 55
Query: 96 NGVKVLSRTIRVDHVN 111
+ K S ++
Sbjct: 56 DNTKFRSHEGETAYIR 71
>d2b0ga1 d.58.7.1 (A:1-83) Splicesomal U1A protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 83
Score = 36.4 bits (83), Expect = 2e-04
Identities = 12/74 (16%), Positives = 34/74 (45%), Gaps = 6/74 (8%)
Query: 36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
+F+ LP + +E + +F+Q+ + LV ++ F+ + + + + + L
Sbjct: 11 LFLTNLPEETNEMMLSMLFNQFPGFKEVRLVPNRHD-----IAFVEFTTELQSNAAKEAL 65
Query: 96 NGVKVL-SRTIRVD 108
G K+ + +++
Sbjct: 66 QGFKITPTHAMKIT 79
>d1ufwa_ d.58.7.1 (A:) Synaptojanin 2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 95
Score = 35.6 bits (82), Expect = 6e-04
Identities = 13/54 (24%), Positives = 27/54 (50%), Gaps = 9/54 (16%)
Query: 54 FSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGVKVLSRTIRV 107
YG IV + + + ++ + + D S LSV +++G+KV R +++
Sbjct: 45 LGSYGTIVLVRINQGQM--------LVTFADSHS-ALSVLDVDGMKVKGRAVKI 89
>d1weya_ d.58.7.1 (A:) Calcipressin-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 104
Score = 34.4 bits (78), Expect = 0.002
Identities = 7/89 (7%), Positives = 23/89 (25%), Gaps = 11/89 (12%)
Query: 36 IFVGGLPYDL-----SEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVL 90
+ D+ + +F Y + + I + + S
Sbjct: 8 LIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------KRVRINFSNPLSAAD 61
Query: 91 SVDNLNGVKVLSRTIRVDHVNDYKPPKDN 119
+ L+ + L + +++ +
Sbjct: 62 ARLRLHKTEFLGKEMKLYFAQTLHIGSSH 90
>d1owxa_ d.58.7.1 (A:) Lupus LA protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 113
Score = 33.6 bits (76), Expect = 0.004
Identities = 16/72 (22%), Positives = 25/72 (34%), Gaps = 5/72 (6%)
Query: 36 IFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNL 95
F G L D+ +FS +GEI ++ VR G E + + +
Sbjct: 14 KFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAKEGIIL-----FKEKAKEALGKAKDA 68
Query: 96 NGVKVLSRTIRV 107
N + R V
Sbjct: 69 NNGNLQLRNKEV 80
>d2cq1a1 d.58.7.1 (A:51-138) Polypyrimidine tract-binding protein 2,
PTBP2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 31.4 bits (70), Expect = 0.017
Identities = 14/79 (17%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Query: 33 SAWIFVGGLPYDLSEGDVICIFSQYGEIVNLNLVRDKITGKSKGFCFICYEDQRSTVLSV 92
S + + LP +++E +VI + +G++ N+ +++ K F + E+ T+++
Sbjct: 8 SRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQ----AFLELATEEAAITMVNY 63
Query: 93 DNLNGVKVLSRTIRVDHVN 111
+ + ++ I + + N
Sbjct: 64 YSAVTPHLRNQPIYIQYSN 82
>d1y3ta1 b.82.1.5 (A:5-334) Hypothetical protein YxaG {Bacillus
subtilis [TaxId: 1423]}
Length = 330
Score = 31.0 bits (69), Expect = 0.081
Identities = 7/50 (14%), Positives = 14/50 (28%), Gaps = 9/50 (18%)
Query: 13 LSEQELSSGSKTSWHDQYKDSAWIFV---------GGLPYDLSEGDVICI 53
+ E G + H + + G L+ GD + +
Sbjct: 216 VVSSEGPKGDRIVDHYHEYHTETFYCLEGQMTMWTDGQEIQLNPGDFLHV 265
>d2ix0a2 b.40.4.5 (A:4-82) Exoribonuclease 2, RNB {Escherichia
coli [TaxId: 562]}
Length = 79
Score = 28.1 bits (63), Expect = 0.18
Identities = 7/37 (18%), Positives = 13/37 (35%)
Query: 62 NLNLVRDKITGKSKGFCFICYEDQRSTVLSVDNLNGV 98
+ KGF F+ + Q+S + + V
Sbjct: 15 QTPRAEGVVKATEKGFGFLEVDAQKSYFIPPPQMKKV 51
>d1xo3a_ d.15.3.3 (A:) C9orf74 homolog {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 101
Score = 27.9 bits (62), Expect = 0.36
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 30 YKDSAWIFVGGLPYDLSEGDVICIFS 55
D+ W +G L Y L + D I S
Sbjct: 71 INDADWELLGELDYQLQDQDSILFIS 96
>d3bu7a1 b.82.1.23 (A:19-373) Gentisate 1,2-dioxygenase
{Silicibacter pomeroyi [TaxId: 89184]}
Length = 355
Score = 28.5 bits (63), Expect = 0.49
Identities = 13/47 (27%), Positives = 19/47 (40%), Gaps = 10/47 (21%)
Query: 16 QELSSGSKTSWHDQYKDSAWIFV---------GGLPYDLSEGDVICI 53
Q L G T H ++ + V GG +D SE D+ C+
Sbjct: 261 QMLRPGEHTKAH-RHTGNVIYNVAKGQGYSIVGGKRFDWSEHDIFCV 306
>d2phda1 b.82.1.23 (A:17-367) Gentisate 1,2-dioxygenase
{Pseudaminobacter salicylatoxidans [TaxId: 93369]}
Length = 351
Score = 28.6 bits (63), Expect = 0.50
Identities = 9/47 (19%), Positives = 16/47 (34%), Gaps = 10/47 (21%)
Query: 16 QELSSGSKTSWHDQYKDSAWIFV---------GGLPYDLSEGDVICI 53
L +G++T+ S V G L +GD+ +
Sbjct: 268 HRLRAGTETATR-NEVGSTVFQVFEGAGAVVMNGETTKLEKGDMFVV 313
>d1d8ba_ a.60.8.1 (A:) HRDC domain from RecQ helicase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 81
Score = 24.5 bits (53), Expect = 4.0
Identities = 15/61 (24%), Positives = 26/61 (42%)
Query: 111 NDYKPPKDNKYTDEETKKLRTIGCAPGTEFGSILPVKTEDIKQEKDSKPTESKDKKRKHK 170
N PP N D KK+ I + F ++ V+ + ++ K K T + K++
Sbjct: 21 NRMVPPVGNFMPDSILKKMAAILPMNDSAFATLGTVEDKYRRRFKYFKATIADLSKKRSS 80
Query: 171 E 171
E
Sbjct: 81 E 81
>d1k4ta3 e.15.1.1 (A:201-430) Eukaryotic DNA topoisomerase I,
N-terminal DNA-binding fragment {Human (Homo sapiens)
[TaxId: 9606]}
Length = 230
Score = 25.1 bits (55), Expect = 6.6
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 151 IKQEKDSKPTESKDKKRKHKEKKVKKEKK 179
K + +++ SK++K K KE+ K K+
Sbjct: 109 FKAQTEARKQMSKEEKLKIKEENEKLLKE 137
>d1y5ia1 b.52.2.2 (A:1075-1244) Respiratory nitrate reductase 1
alpha chain {Escherichia coli [TaxId: 562]}
Length = 170
Score = 24.6 bits (53), Expect = 7.2
Identities = 12/66 (18%), Positives = 24/66 (36%), Gaps = 13/66 (19%)
Query: 18 LSSGSKTSWHDQYKDSAW---IFVGGLP----------YDLSEGDVICIFSQYGEIVNLN 64
L+ K H Y D+ + GG +++ D I +F+ G +
Sbjct: 15 LTPHQKWGIHSTYSDNLLMLTLGRGGPVVWLSEADAKDLGIADNDWIEVFNSNGALTARA 74
Query: 65 LVRDKI 70
+V ++
Sbjct: 75 VVSQRV 80
>d1y8ob1 b.84.1.1 (B:128-229) Lipoyl domain of dihydrolipoamide
acetyltransferase {Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 23.7 bits (51), Expect = 9.1
Identities = 8/18 (44%), Positives = 9/18 (50%)
Query: 149 EDIKQEKDSKPTESKDKK 166
DI D +PTE D K
Sbjct: 85 ADISAFADYRPTEVTDLK 102
>d2lefa_ a.21.1.1 (A:) Lymphoid enhancer-binding factor, LEF1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 86
Score = 23.3 bits (50), Expect = 9.7
Identities = 6/41 (14%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 148 TEDIKQEKDSKPTESKDK-KRKHKEKKVKKEKKKKKKRKKS 187
+ + + + + + + + + KKKKRK+
Sbjct: 45 SREEQAKYYELARKERQLHMQLYPGWSARDNYGKKKKRKRE 85
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.308 0.127 0.357
Gapped
Lambda K H
0.267 0.0534 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 685,432
Number of extensions: 31306
Number of successful extensions: 340
Number of sequences better than 10.0: 1
Number of HSP's gapped: 290
Number of HSP's successfully gapped: 146
Length of query: 199
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 118
Effective length of database: 1,295,466
Effective search space: 152864988
Effective search space used: 152864988
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 50 (23.5 bits)