Query psy10782
Match_columns 105
No_of_seqs 113 out of 518
Neff 5.5
Searched_HMMs 46136
Date Fri Aug 16 18:23:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10782.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10782hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd06071 Beach BEACH (Beige and 100.0 1.6E-43 3.4E-48 276.7 6.3 96 1-104 21-116 (275)
2 PF02138 Beach: Beige/BEACH do 100.0 2.4E-42 5.2E-47 269.3 3.2 95 1-104 21-115 (270)
3 KOG1787|consensus 100.0 5.4E-30 1.2E-34 227.5 1.1 96 1-104 492-587 (1126)
4 KOG1786|consensus 99.8 1.1E-19 2.3E-24 162.4 2.3 91 1-104 896-986 (1081)
5 KOG1786|consensus 99.7 1.4E-17 3E-22 148.9 3.8 97 1-103 359-455 (1081)
6 KOG1787|consensus 98.3 3.4E-08 7.3E-13 89.4 -3.1 95 1-104 875-970 (1126)
7 smart00002 PLP Myelin proteoli 48.6 6 0.00013 24.8 0.1 14 6-19 23-36 (60)
8 PF11261 IRF-2BP1_2: Interfero 46.8 15 0.00033 22.5 1.7 45 2-61 1-50 (54)
9 PF07786 DUF1624: Protein of u 34.7 14 0.00029 27.2 0.1 16 4-19 158-173 (223)
10 PF12310 Elf-1_N: Transcriptio 32.6 28 0.00061 24.2 1.4 15 7-21 23-37 (108)
11 PF11705 RNA_pol_3_Rpc31: DNA- 27.9 2.4E+02 0.0051 21.3 5.9 58 3-66 10-67 (233)
12 PF13410 GST_C_2: Glutathione 27.4 1.3E+02 0.0029 17.3 3.6 35 50-91 8-42 (69)
13 PRK09458 pspB phage shock prot 26.0 47 0.001 21.7 1.5 39 16-64 20-58 (75)
14 PF10925 DUF2680: Protein of u 25.2 1.5E+02 0.0033 18.1 3.7 23 43-65 31-53 (59)
15 KOG3534|consensus 21.0 27 0.00058 32.2 -0.5 15 10-24 631-648 (1253)
16 PF13382 Adenine_deam_C: Adeni 20.1 62 0.0013 23.9 1.3 35 32-66 98-133 (171)
No 1
>cd06071 Beach BEACH (Beige and Chediak-Higashi) domains, implicated in membrane trafficking, are present in a family of proteins conserved throughout eukaryotes. This group contains human lysosomal trafficking regulator (LYST), LPS-responsive and beige-like anchor (LRBA) and neurobeachin. Disruption of LYST leads to Chediak-Higashi syndrome, characterized by severe immunodeficiency, albinism, poor blood coagulation and neurologic problems. Neurobeachin is a candidate gene linked to autism. LBRA seems to be upregulated in several cancer types. It has been shown that the BEACH domain itself is important for the function of these proteins.
Probab=100.00 E-value=1.6e-43 Score=276.71 Aligned_cols=96 Identities=46% Similarity=0.914 Sum_probs=89.5
Q ss_pred CCCCCCCCCCCCCccceEeccCCCCCcCCCCCccccccCccccccChHHHHHHHHHHHHHHHHhhhcCCCCCCCCcccCC
Q psy10782 1 MAGRSYNDLMQYPVLPFILSDYKSATLDLTDPKSFRNLKKPMAVQDKKNESHYVNNYNYLAREMCDAVGGVNQEPYHYGS 80 (105)
Q Consensus 1 lsGRSfnDlsqYPVFPWVl~dy~s~~ldl~~~~~~RDLskPiga~~~~r~~~~~~~y~~l~~~~~~~~~~~~~~~f~y~s 80 (105)
+|||||||++|||||||||+||+|++|||+++..||||+|||||++++|++.++++|+++... +.++||||+
T Consensus 21 ~sGRSf~D~sqYPIfPWvi~dy~s~~ldl~~~~~~RDLskpigal~~~r~~~~~~~~~~~~~~--------~~~~~~y~s 92 (275)
T cd06071 21 LAGRSFNDLSQYPIFPWVISDYTSEELDLNDPSTYRDLSKPIGALNKERLQLLKERYESDSDD--------SDPPFHYGS 92 (275)
T ss_pred HhCCCCCCcccCCccCeeecCCCCcccccCCcccccCCCCchhhcCHHHHHHHHHHHhhhccc--------CCCCCCCCC
Confidence 589999999999999999999999999999999999999999999999999999999754321 468999999
Q ss_pred CCCCHHHHHHhhcCchhhhhcccc
Q psy10782 81 HYSNSGTVLHFLVRIPPFTSMFLN 104 (105)
Q Consensus 81 hyS~~~~V~~yLiR~ePFt~l~i~ 104 (105)
|||+|++|++||||+||||++||.
T Consensus 93 hyS~~~~V~~yLvR~ePft~~~~~ 116 (275)
T cd06071 93 HYSNPAIVLYYLVRLEPFTTLHLS 116 (275)
T ss_pred CCCCHHHHHHHHhHcCCccHHHHH
Confidence 999999999999999999998874
No 2
>PF02138 Beach: Beige/BEACH domain; InterPro: IPR000409 The BEACH domain is found in eukaryotic proteins that have diverse cellular functions ranging from lysosomal traffic to apoptosis and cytokinesisin vesicle trafficking, membrane dynamics, and receptor signaling. The name BEACH is derived from beige and Chediak-Higashi syndrome (CHS). CHS is a rare, autosomal recessive disorder that can cause severe immunodeficiency and albinism in humans and other mammals, and beige is the name for the CHS disease in mice [, ]. The BEACH domain was first described in the lysosomal-trafficking regulators Beige protein and its human homologue CHS protein Q99698 from SWISSPROT. It is also found in distantly related proteins like, for example, the FAN proteins O35242 from SWISSPROT and Q92636 from SWISSPROT which are factor associated with neutral sphingomyelinase activation []. It has also been described in Dictyostelium proteins Lvs []. The BEACH domain is usually followed by a series of WD repeats (PDOC00574 from PROSITEDOC). The function of the BEACH domain is unknown.; PDB: 1MI1_B 1T77_C.
Probab=100.00 E-value=2.4e-42 Score=269.26 Aligned_cols=95 Identities=47% Similarity=0.963 Sum_probs=65.2
Q ss_pred CCCCCCCCCCCCCccceEeccCCCCCcCCCCCccccccCccccccChHHHHHHHHHHHHHHHHhhhcCCCCCCCCcccCC
Q psy10782 1 MAGRSYNDLMQYPVLPFILSDYKSATLDLTDPKSFRNLKKPMAVQDKKNESHYVNNYNYLAREMCDAVGGVNQEPYHYGS 80 (105)
Q Consensus 1 lsGRSfnDlsqYPVFPWVl~dy~s~~ldl~~~~~~RDLskPiga~~~~r~~~~~~~y~~l~~~~~~~~~~~~~~~f~y~s 80 (105)
+|||||+|++||||||||++||++++|||+|+..||||+|||||++++|+++++++|+++++ ..++||||+
T Consensus 21 ~aGRSf~D~sqYPIFPWv~~dy~s~~ldl~~~~~~RdLskPiga~~~~r~~~~~~~~~~~~~---------~~~~~~y~s 91 (270)
T PF02138_consen 21 LAGRSFNDLSQYPIFPWVISDYDSEELDLNDPSNYRDLSKPIGAQNEERLEKLKERYEEMEE---------FEPPFHYGS 91 (270)
T ss_dssp HCT--TT-GGG---B---B---SSSS--TT-GGGB--TTS-HHHCSHHHHHHHHHHHHC--S---------SS---SBSS
T ss_pred HhccCCCCCccCccccchhccCCccccccCCccccccccccccccCHHHHHHHHHHHHhhhc---------cCCCccccC
Confidence 59999999999999999999999999999999999999999999999999999999986321 237999999
Q ss_pred CCCCHHHHHHhhcCchhhhhcccc
Q psy10782 81 HYSNSGTVLHFLVRIPPFTSMFLN 104 (105)
Q Consensus 81 hyS~~~~V~~yLiR~ePFt~l~i~ 104 (105)
|||++++|++||+|+||||++|+.
T Consensus 92 ~ys~~~~v~~~L~R~ePft~l~~~ 115 (270)
T PF02138_consen 92 HYSSPGTVLYYLVRLEPFTSLHID 115 (270)
T ss_dssp -SS-HHHHHHHTTTSTTHHHHHHH
T ss_pred CCCCcchhhhhhcccChHHHHHHH
Confidence 999999999999999999999864
No 3
>KOG1787|consensus
Probab=99.95 E-value=5.4e-30 Score=227.51 Aligned_cols=96 Identities=45% Similarity=0.867 Sum_probs=91.1
Q ss_pred CCCCCCCCCCCCCccceEeccCCCCCcCCCCCccccccCccccccChHHHHHHHHHHHHHHHHhhhcCCCCCCCCcccCC
Q psy10782 1 MAGRSYNDLMQYPVLPFILSDYKSATLDLTDPKSFRNLKKPMAVQDKKNESHYVNNYNYLAREMCDAVGGVNQEPYHYGS 80 (105)
Q Consensus 1 lsGRSfnDlsqYPVFPWVl~dy~s~~ldl~~~~~~RDLskPiga~~~~r~~~~~~~y~~l~~~~~~~~~~~~~~~f~y~s 80 (105)
.+||||||++||||||||+.||.++++|++.+.+||||+|||||+|++|...|.+||+..++. .++.|||++
T Consensus 492 ~agrsyndl~qypvfpwvl~dy~s~~ld~s~~~~frdlsKpigaln~~~~~~f~dry~s~~D~--------~i~~~~~~t 563 (1126)
T KOG1787|consen 492 SAGRSYNDLTQYPVFPWVLRDYSSETLDLSKLSTFRDLSKPIGALNPKRAYLFRDRYESFEDQ--------AIPSFHYGT 563 (1126)
T ss_pred ccCcccCccccCCCCCeeeecccchhhhcccchhHHhhcCcccCCCcccchhHhhhhhccccc--------ccccccccc
Confidence 489999999999999999999999999999999999999999999999999999999976543 468999999
Q ss_pred CCCCHHHHHHhhcCchhhhhcccc
Q psy10782 81 HYSNSGTVLHFLVRIPPFTSMFLN 104 (105)
Q Consensus 81 hyS~~~~V~~yLiR~ePFt~l~i~ 104 (105)
|||+++.|++||+|+||||++||+
T Consensus 564 hys~~~~~l~~l~rvepf~S~~~~ 587 (1126)
T KOG1787|consen 564 HYSSAANVLAYLLRVEPFTSLHLQ 587 (1126)
T ss_pred ccccccceeeeeeecCcccccccc
Confidence 999999999999999999999986
No 4
>KOG1786|consensus
Probab=99.76 E-value=1.1e-19 Score=162.40 Aligned_cols=91 Identities=58% Similarity=1.045 Sum_probs=75.8
Q ss_pred CCCCCCCCCCCCCccceEeccCCCCCcCCCCCccccccCccccccChHHHHHHHHHHHHHHHHhhhcCCCCCCCCcccCC
Q psy10782 1 MAGRSYNDLMQYPVLPFILSDYKSATLDLTDPKSFRNLKKPMAVQDKKNESHYVNNYNYLAREMCDAVGGVNQEPYHYGS 80 (105)
Q Consensus 1 lsGRSfnDlsqYPVFPWVl~dy~s~~ldl~~~~~~RDLskPiga~~~~r~~~~~~~y~~l~~~~~~~~~~~~~~~f~y~s 80 (105)
+||||+||++||||||||++||.++.+|+.+..+||++++|||++ .+...+.. ..+.+ ...+||||+
T Consensus 896 ~agrs~nd~~q~~v~~~~~ad~~~k~~~l~~~~~~~~~~r~~a~~----~~~~~~~~-~~~~e--------~~~~~~~~~ 962 (1081)
T KOG1786|consen 896 LAGRSFNDWMQYPVFPWVLADYVSKVLDLQDLLIYRDLSRPIAVQ----KEKLEEHH-SWESE--------DTEPYHYGS 962 (1081)
T ss_pred hhcCcHHHhhcCcceEEEecccceeeEeeeccccccccccchhHH----HHHHhhhh-hhhhh--------ccCCccccc
Confidence 589999999999999999999999999999999999999999933 22111221 22211 237999999
Q ss_pred CCCCHHHHHHhhcCchhhhhcccc
Q psy10782 81 HYSNSGTVLHFLVRIPPFTSMFLN 104 (105)
Q Consensus 81 hyS~~~~V~~yLiR~ePFt~l~i~ 104 (105)
|||+++.|.+|++|+.|||.+|+.
T Consensus 963 ~~s~~~~~~~~~~r~~p~~~~~~~ 986 (1081)
T KOG1786|consen 963 HYSNSGTVSHFLIRLPPFTEMFLS 986 (1081)
T ss_pred cccCccccccccccCCchHHHHHH
Confidence 999999999999999999999874
No 5
>KOG1786|consensus
Probab=99.68 E-value=1.4e-17 Score=148.93 Aligned_cols=97 Identities=29% Similarity=0.518 Sum_probs=88.6
Q ss_pred CCCCCCCCCCCCCccceEeccCCCCCcCCCCCccccccCccccccChHHHHHHHHHHHHHHHHhhhcCCCCCCCCcccCC
Q psy10782 1 MAGRSYNDLMQYPVLPFILSDYKSATLDLTDPKSFRNLKKPMAVQDKKNESHYVNNYNYLAREMCDAVGGVNQEPYHYGS 80 (105)
Q Consensus 1 lsGRSfnDlsqYPVFPWVl~dy~s~~ldl~~~~~~RDLskPiga~~~~r~~~~~~~y~~l~~~~~~~~~~~~~~~f~y~s 80 (105)
++||+++|++||||||||+.+|+++.+|+.|+..+|++.||+|++++++.+.+..+|++..+.+. ..+.|||++
T Consensus 359 l~~r~~~~~~~~pi~pw~~~~~~~~~l~~~d~~~~r~~~~~~~~~s~e~~~~~~~r~~~~~d~~~------~~~~~~~~t 432 (1081)
T KOG1786|consen 359 LAGRSIADLAQYPIFPWVLAFYDFSGLDLLDPLTARKLLKLGGHQSDEGYERFAKRFEEWLDQNA------EDPLFHVLT 432 (1081)
T ss_pred ccccchhhhccCcccceeeccccccchhhcChHhhhhhhhccCCCCHHHHHHHhhhhhhhhcccc------ccccccccc
Confidence 58999999999999999999999999999999999999999999999999999999997654322 358999999
Q ss_pred CCCCHHHHHHhhcCchhhhhccc
Q psy10782 81 HYSNSGTVLHFLVRIPPFTSMFL 103 (105)
Q Consensus 81 hyS~~~~V~~yLiR~ePFt~l~i 103 (105)
||+++.+|+.|++|.+|++.+++
T Consensus 433 ~~~S~~~~~~y~~r~~p~~~~~~ 455 (1081)
T KOG1786|consen 433 HLLSPLIVMSYFARKNPLSELFL 455 (1081)
T ss_pred cccchhhhhhhhhhcCcchHHHH
Confidence 99999999999999999777654
No 6
>KOG1787|consensus
Probab=98.33 E-value=3.4e-08 Score=89.44 Aligned_cols=95 Identities=15% Similarity=0.046 Sum_probs=82.1
Q ss_pred CCCCCCCCCCCCCccceEeccCCCCCcCCCCCccccccCc-cccccChHHHHHHHHHHHHHHHHhhhcCCCCCCCCcccC
Q psy10782 1 MAGRSYNDLMQYPVLPFILSDYKSATLDLTDPKSFRNLKK-PMAVQDKKNESHYVNNYNYLAREMCDAVGGVNQEPYHYG 79 (105)
Q Consensus 1 lsGRSfnDlsqYPVFPWVl~dy~s~~ldl~~~~~~RDLsk-Piga~~~~r~~~~~~~y~~l~~~~~~~~~~~~~~~f~y~ 79 (105)
+.||+.|+..+||.|||...+.-+...|+-.+..|||..+ +++++++++++.+...... -..+.++.+|++
T Consensus 875 ~vg~a~~~~~~~~~~~~~~~~v~~~~~~r~~~~~~~d~~vv~~~ar~~~~l~~~~~~~s~--------s~D~tI~~~~~s 946 (1126)
T KOG1787|consen 875 FVGRADNDIIQHPGFGDYSFRVYSTDSLRMRQSVFRDGDVVTCGARLEQYLAALQYPVSS--------SEDGTIPLLYWS 946 (1126)
T ss_pred EEEeccCccccccCccccccceEeeehhhhccccccccceeeeeeccccccccccccccc--------CCCcceeeeeec
Confidence 4699999999999999999999999999889999999999 9999999999876554432 123357899999
Q ss_pred CCCCCHHHHHHhhcCchhhhhcccc
Q psy10782 80 SHYSNSGTVLHFLVRIPPFTSMFLN 104 (105)
Q Consensus 80 shyS~~~~V~~yLiR~ePFt~l~i~ 104 (105)
|||+.+-+..+.-|.+||+.+-++
T Consensus 947 -~~~~~g~~~~~~s~~~e~~~lt~~ 970 (1126)
T KOG1787|consen 947 -HISSIGDIVVSGSAPEEFTTLTGQ 970 (1126)
T ss_pred -cccccccccccccccCccchheec
Confidence 999999999999999999987543
No 7
>smart00002 PLP Myelin proteolipid protein (PLP or lipophilin).
Probab=48.64 E-value=6 Score=24.81 Aligned_cols=14 Identities=36% Similarity=0.532 Sum_probs=11.6
Q ss_pred CCCCCCCCccceEe
Q psy10782 6 YNDLMQYPVLPFIL 19 (105)
Q Consensus 6 fnDlsqYPVFPWVl 19 (105)
.-|+.||=|+||=-
T Consensus 23 C~D~RQyGilpwna 36 (60)
T smart00002 23 CVDARQYGILPWNA 36 (60)
T ss_pred EeechhcceeecCC
Confidence 45889999999964
No 8
>PF11261 IRF-2BP1_2: Interferon regulatory factor 2-binding protein zinc finger; InterPro: IPR022750 IRF-2BP1 and IRF-2BP2 are nuclear transcriptional repressor proteins and can inhibit both enhancer-activated and basal transcription. They both contain N-terminal zinc finger and C-terminal RING finger domains []. This entry represents the N-terminal zinc finger domain of IRF-2BP1 and IRF-2BP2.
Probab=46.82 E-value=15 Score=22.52 Aligned_cols=45 Identities=13% Similarity=0.246 Sum_probs=30.5
Q ss_pred CCCCCCCCCCCCccceEeccCCCCCcCCCCCccccccCccc--cccC---hHHHHHHHHHHHHHH
Q psy10782 2 AGRSYNDLMQYPVLPFILSDYKSATLDLTDPKSFRNLKKPM--AVQD---KKNESHYVNNYNYLA 61 (105)
Q Consensus 2 sGRSfnDlsqYPVFPWVl~dy~s~~ldl~~~~~~RDLskPi--ga~~---~~r~~~~~~~y~~l~ 61 (105)
|.|...=|+--|-+||.+.. |++.|+ |..| ..|.+.+++.-+.++
T Consensus 1 s~Rq~CyLCdlPr~PWami~---------------df~EpVCRgCvNyEGaDrIe~vie~arq~k 50 (54)
T PF11261_consen 1 SRRQQCYLCDLPRMPWAMIW---------------DFSEPVCRGCVNYEGADRIELVIESARQLK 50 (54)
T ss_pred CCceeEEeccCCCCchHHHh---------------hccchhhhhhcCcccchhHHHHHHHHHHHH
Confidence 45666667888999998654 456777 5544 467777777666554
No 9
>PF07786 DUF1624: Protein of unknown function (DUF1624); InterPro: IPR012429 These sequences are found in hypothetical proteins of unknown function expressed by bacterial and archaeal species. The region in question is approximately 230 residues long.
Probab=34.69 E-value=14 Score=27.21 Aligned_cols=16 Identities=19% Similarity=0.542 Sum_probs=11.9
Q ss_pred CCCCCCCCCCccceEe
Q psy10782 4 RSYNDLMQYPVLPFIL 19 (105)
Q Consensus 4 RSfnDlsqYPVFPWVl 19 (105)
+.+....-||+|||+.
T Consensus 158 ~~~~~~~~~Pl~PW~~ 173 (223)
T PF07786_consen 158 RNFFSNGYFPLFPWLG 173 (223)
T ss_pred cCCCcCCcCccHHHHH
Confidence 4455567799999973
No 10
>PF12310 Elf-1_N: Transcription factor protein N terminal; InterPro: IPR022084 This domain family is found in eukaryotes, and is approximately 110 amino acids in length. The family is found in association with PF00178 from PFAM. There is a conserved PAVIVE sequence motif. Elf-1 is an immune cell specific transcription factor. It is found in T cells, B cells, megakaryocytes,and mast cells and is involved in the control of transcription for various immune proteins. These include IL-2, GM-CSF, IL-5, IL-2 receptor alpha chain, and CD4 in T cells, IgH, blk, and lyn in B cells, TdT in T and B cells, IL-3 in megakaryocytes, and SCL and Fc-epsilon-RI alpha chain in mast cells.
Probab=32.56 E-value=28 Score=24.22 Aligned_cols=15 Identities=20% Similarity=0.414 Sum_probs=11.9
Q ss_pred CCCCCCCccceEecc
Q psy10782 7 NDLMQYPVLPFILSD 21 (105)
Q Consensus 7 nDlsqYPVFPWVl~d 21 (105)
..+.+.++|||||..
T Consensus 23 ~q~~~ps~~PAVIVE 37 (108)
T PF12310_consen 23 QQLGDPSVFPAVIVE 37 (108)
T ss_pred cccCCCCCCCeEEEe
Confidence 346688999999975
No 11
>PF11705 RNA_pol_3_Rpc31: DNA-directed RNA polymerase III subunit Rpc31; InterPro: IPR024661 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. RNA polymerase III contains seventeen subunits in yeasts and in human cells. Twelve of these are akin to RNA polymerase I or II and the other five are RNA polymerase III-specific, and form the functionally distinct groups: (i) Rpc31-Rpc34-Rpc82, and (ii) Rpc37-Rpc53. Rpc31, Rpc34 and Rpc82 form a cluster of enzyme-specific subunits that contribute to transcription initiation in Saccharomyces cerevisiae and Homo sapiens. There is evidence that these subunits are anchored at or near the N-terminal Zn-fold of Rpc1, itself prolonged by a highly conserved but RNA polymerase III-specific domain []. This entry represents the Rpc31 subunit.
Probab=27.94 E-value=2.4e+02 Score=21.29 Aligned_cols=58 Identities=26% Similarity=0.243 Sum_probs=40.8
Q ss_pred CCCCCCCCCCCccceEeccCCCCCcCCCCCccccccCccccccChHHHHHHHHHHHHHHHHhhh
Q psy10782 3 GRSYNDLMQYPVLPFILSDYKSATLDLTDPKSFRNLKKPMAVQDKKNESHYVNNYNYLAREMCD 66 (105)
Q Consensus 3 GRSfnDlsqYPVFPWVl~dy~s~~ldl~~~~~~RDLskPiga~~~~r~~~~~~~y~~l~~~~~~ 66 (105)
||++ +-.-+||-... .. .++...+..|=++.+|+...-.++...+...+..|...+..
T Consensus 10 ~~~~----~~~~l~~~~~~-~~-~~~~~P~~lfP~~~~P~~~~~t~~E~~~v~~~~~lr~~~~~ 67 (233)
T PF11705_consen 10 GRGG----NGEALGFGRGE-ML-PPDLQPPPLFPPLNLPVPLPLTEEERYLVALKRELRERMRD 67 (233)
T ss_pred CCCC----CccCCccccCC-cc-ccccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 4555 55667887653 22 23777788899999999876666777777788877777654
No 12
>PF13410 GST_C_2: Glutathione S-transferase, C-terminal domain; PDB: 4DEJ_H 3IC8_A 2JL4_A 2V6K_B 3CBU_B 1JLW_B 3F6D_B 3G7I_A 3F63_A 3G7J_B ....
Probab=27.39 E-value=1.3e+02 Score=17.31 Aligned_cols=35 Identities=14% Similarity=0.264 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCCCCCcccCCCCCCHHHHHHh
Q psy10782 50 ESHYVNNYNYLAREMCDAVGGVNQEPYHYGSHYSNSGTVLHF 91 (105)
Q Consensus 50 ~~~~~~~y~~l~~~~~~~~~~~~~~~f~y~shyS~~~~V~~y 91 (105)
.+.+.+.++.++.... ..+|..|.++|-.-++++-
T Consensus 8 ~~~~~~~l~~le~~L~-------~~~fl~G~~~s~aD~~l~~ 42 (69)
T PF13410_consen 8 RAQLEAALDALEDHLA-------DGPFLFGDRPSLADIALAP 42 (69)
T ss_dssp HHHHHHHHHHHHHHHT-------TSSBTTBSS--HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh-------hCCCCCCCCCCHHHHHHHH
Confidence 3444555555655543 2459999999998666543
No 13
>PRK09458 pspB phage shock protein B; Provisional
Probab=26.01 E-value=47 Score=21.71 Aligned_cols=39 Identities=8% Similarity=0.244 Sum_probs=25.5
Q ss_pred ceEeccCCCCCcCCCCCccccccCccccccChHHHHHHHHHHHHHHHHh
Q psy10782 16 PFILSDYKSATLDLTDPKSFRNLKKPMAVQDKKNESHYVNNYNYLAREM 64 (105)
Q Consensus 16 PWVl~dy~s~~ldl~~~~~~RDLskPiga~~~~r~~~~~~~y~~l~~~~ 64 (105)
+|++--|.++ |.-++-+.+...++++.+.++-+.|++..
T Consensus 20 iWL~LHY~sk----------~~~~~~Ls~~d~~~L~~L~~~A~rm~~RI 58 (75)
T PRK09458 20 IWLWLHYRSK----------RQGSQGLSQEEQQRLAQLTEKAERMRERI 58 (75)
T ss_pred HHHHHhhccc----------ccCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 5888888775 45555666666677777666666655544
No 14
>PF10925 DUF2680: Protein of unknown function (DUF2680); InterPro: IPR024485 Members in this family of proteins are annotated as YckD however currently no function is known.
Probab=25.25 E-value=1.5e+02 Score=18.09 Aligned_cols=23 Identities=9% Similarity=0.027 Sum_probs=17.6
Q ss_pred cccChHHHHHHHHHHHHHHHHhh
Q psy10782 43 AVQDKKNESHYVNNYNYLAREMC 65 (105)
Q Consensus 43 ga~~~~r~~~~~~~y~~l~~~~~ 65 (105)
|.+++++.+.++++.+...+.+.
T Consensus 31 G~iTqeqAd~ik~~id~~~~~~~ 53 (59)
T PF10925_consen 31 GVITQEQADAIKKHIDQRQEYMQ 53 (59)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHH
Confidence 88999999998888776555443
No 15
>KOG3534|consensus
Probab=21.02 E-value=27 Score=32.20 Aligned_cols=15 Identities=40% Similarity=0.950 Sum_probs=12.3
Q ss_pred CCCCc---cceEeccCCC
Q psy10782 10 MQYPV---LPFILSDYKS 24 (105)
Q Consensus 10 sqYPV---FPWVl~dy~s 24 (105)
-|+|| +|||+.|+--
T Consensus 631 IQFPIEMSMPWILTDhIL 648 (1253)
T KOG3534|consen 631 IQFPIEMSMPWILTDHIL 648 (1253)
T ss_pred eecchhccCchhhhhhHH
Confidence 47887 8999999843
No 16
>PF13382 Adenine_deam_C: Adenine deaminase C-terminal domain; PDB: 3T8L_B 3T81_A 3NQB_A.
Probab=20.05 E-value=62 Score=23.86 Aligned_cols=35 Identities=9% Similarity=0.174 Sum_probs=26.6
Q ss_pred CccccccCccc-cccChHHHHHHHHHHHHHHHHhhh
Q psy10782 32 PKSFRNLKKPM-AVQDKKNESHYVNNYNYLAREMCD 66 (105)
Q Consensus 32 ~~~~RDLskPi-ga~~~~r~~~~~~~y~~l~~~~~~ 66 (105)
-+.--.|.+|| |.++.+-.+.+.++++++++..++
T Consensus 98 g~v~a~lpLpi~GlmS~~~~eev~~~~~~l~~~~~~ 133 (171)
T PF13382_consen 98 GEVLAELPLPIAGLMSDLPAEEVARQLEELEEALRE 133 (171)
T ss_dssp TEEEEEEE-TBTTTBBSS-HHHHHHHHHHHHHHHHT
T ss_pred CEEEEEEeccccceecCCCHHHHHHHHHHHHHHHHH
Confidence 34567789999 568888899999999999887765
Done!