Query psy10782
Match_columns 105
No_of_seqs 113 out of 518
Neff 5.5
Searched_HMMs 29240
Date Fri Aug 16 18:24:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10782.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10782hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1t77_A Lipopolysaccharide-resp 100.0 8.4E-44 2.9E-48 289.6 3.9 96 1-104 157-252 (414)
2 1xfi_A Unknown protein; struct 23.7 1E+02 0.0035 24.0 4.6 67 7-80 5-96 (367)
3 3bqs_A Uncharacterized protein 16.2 95 0.0033 19.6 2.4 22 40-61 65-86 (93)
4 3mab_A Uncharacterized protein 15.6 1E+02 0.0035 19.6 2.4 22 40-61 65-86 (93)
5 3uky_C Nuclear CAP-binding pro 15.1 53 0.0018 17.2 0.8 15 27-41 10-24 (32)
6 1mli_A Muconolactone isomerase 14.7 39 0.0013 22.0 0.2 10 9-18 68-77 (96)
7 3p8c_A Cytoplasmic FMR1-intera 14.6 17 0.00057 33.4 -2.1 15 9-23 635-652 (1253)
8 4gfq_A Ribosome-recycling fact 9.5 3E+02 0.01 20.0 3.6 36 27-62 111-146 (209)
9 3nqb_A Adenine deaminase 2; PS 8.6 2.3E+02 0.0078 23.1 2.9 45 32-78 515-560 (608)
10 3oc5_A Toxin coregulated pilus 8.4 81 0.0028 24.3 0.2 13 11-24 184-196 (318)
No 1
>1t77_A Lipopolysaccharide-responsive and beige-like anchor protein, CDC4-like protein; PH-beach domains, vesicle trafficking, signal transduction; 2.40A {Homo sapiens} SCOP: a.169.1.1 b.55.1.6 PDB: 1mi1_A
Probab=100.00 E-value=8.4e-44 Score=289.62 Aligned_cols=96 Identities=46% Similarity=0.887 Sum_probs=89.8
Q ss_pred CCCCCCCCCCCCCccceEeccCCCCCcCCCCCccccccCccccccChHHHHHHHHHHHHHHHHhhhcCCCCCCCCcccCC
Q psy10782 1 MAGRSYNDLMQYPVLPFILSDYKSATLDLTDPKSFRNLKKPMAVQDKKNESHYVNNYNYLAREMCDAVGGVNQEPYHYGS 80 (105)
Q Consensus 1 lsGRSfnDlsqYPVFPWVl~dy~s~~ldl~~~~~~RDLskPiga~~~~r~~~~~~~y~~l~~~~~~~~~~~~~~~f~y~s 80 (105)
+|||||||++|||||||||+||+|++|||+|++.||||+|||||+|++|++.+++||+++++ ...++|||||
T Consensus 157 ~aGRs~nDl~qYPVFPWVl~dy~s~~ldl~~~~~~RDLskpigaln~~r~~~~~~ry~~~~~--------~~~~~f~ygs 228 (414)
T 1t77_A 157 IAGRSYNDLNQYPVFPWVITNYESEELDLTLPTNFRDLSKPIGALNPKRAAFFAERYESWED--------DQVPKFHYGT 228 (414)
T ss_dssp HHTCCSSCGGGCCCBCCCBCCCSSSSCCTTCGGGBCCTTSCHHHHCHHHHHHHHHHHHHCCC--------SSSCCCSBSS
T ss_pred HcCCCccccccCcccceeeccCcccccccCCccccccCCCchhhcCHHHHHHHHHHHHhhcc--------cCCCCcccCC
Confidence 58999999999999999999999999999999999999999999999999999999987532 1468999999
Q ss_pred CCCCHHHHHHhhcCchhhhhcccc
Q psy10782 81 HYSNSGTVLHFLVRIPPFTSMFLN 104 (105)
Q Consensus 81 hyS~~~~V~~yLiR~ePFt~l~i~ 104 (105)
|||++++|++||+|+||||++|++
T Consensus 229 hyS~~~~V~~yL~R~ePft~~~~~ 252 (414)
T 1t77_A 229 HYSTASFVLAWLLRIEPFTTYFLN 252 (414)
T ss_dssp CSCCHHHHHHHHTTSTTHHHHHHH
T ss_pred CCCCHHHHHHHHhcCCcHHHHHHH
Confidence 999999999999999999999863
No 2
>1xfi_A Unknown protein; structural genomics, protein structure initiative, CESG, AT2G17340, center for eukaryotic structural genomics; 1.70A {Arabidopsis thaliana} SCOP: e.50.1.1 PDB: 2q40_A
Probab=23.73 E-value=1e+02 Score=24.02 Aligned_cols=67 Identities=16% Similarity=0.396 Sum_probs=42.6
Q ss_pred CCCCCCCccc-eEeccCCCCCcCCC-------CC--------ccccc---------cCccccccChHHHHHHHHHHHHHH
Q psy10782 7 NDLMQYPVLP-FILSDYKSATLDLT-------DP--------KSFRN---------LKKPMAVQDKKNESHYVNNYNYLA 61 (105)
Q Consensus 7 nDlsqYPVFP-WVl~dy~s~~ldl~-------~~--------~~~RD---------LskPiga~~~~r~~~~~~~y~~l~ 61 (105)
..+...|..+ +|-.+|.-.++|+. |. ..|++ ..-|-...-++|.+.|.++|.+.-
T Consensus 5 ~~~~~~pll~~~~~~~y~p~t~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~a~~~~~~~~a~~ra~~f~~~~~~~l 84 (367)
T 1xfi_A 5 SEMVPFPQLPMPIENNYRACTIPYRFPSDDPKKATPNEISWINVFANSIPSFKKRAESDITVPDAPARAEKFAERYAGIL 84 (367)
T ss_dssp -CCBCCTTSCSCCTTTCCSBCSCCCCTTSCTTSCCHHHHHHHHHHHTTHHHHHHHHHTCTTSTTHHHHHHHHHHHHHHHH
T ss_pred cccccCcccCCccccCCCCCccCCCCCcccccccHHHHHHHHHHHHHhhHHHHHHhccCCCCccHHHHHHHHHHHHHHHH
Confidence 3456667666 34469999999992 11 12332 122445566799999999998766
Q ss_pred HHhhhcCCCCCCCCcccCC
Q psy10782 62 REMCDAVGGVNQEPYHYGS 80 (105)
Q Consensus 62 ~~~~~~~~~~~~~~f~y~s 80 (105)
+...+ .|..||.
T Consensus 85 ~~l~~-------~p~~~g~ 96 (367)
T 1xfi_A 85 EDLKK-------DPESHGG 96 (367)
T ss_dssp HHHHH-------CTTGGGC
T ss_pred HHHhh-------CccccCC
Confidence 65543 4667776
No 3
>3bqs_A Uncharacterized protein; 10114F, NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.42A {Listeria monocytogenes str} PDB: 3bqt_A 3mab_A
Probab=16.24 E-value=95 Score=19.62 Aligned_cols=22 Identities=9% Similarity=-0.103 Sum_probs=19.0
Q ss_pred ccccccChHHHHHHHHHHHHHH
Q psy10782 40 KPMAVQDKKNESHYVNNYNYLA 61 (105)
Q Consensus 40 kPiga~~~~r~~~~~~~y~~l~ 61 (105)
+|..+++++|.+.+.+.|++++
T Consensus 65 ~~w~~l~~~~K~~L~~~~~~~~ 86 (93)
T 3bqs_A 65 IRWHGLDEAKKIELKKFHQSLE 86 (93)
T ss_dssp SCGGGSCHHHHHHHHHHHHHHC
T ss_pred CCHHHCCHHHHHHHHHHHHHhh
Confidence 6777889999999999999874
No 4
>3mab_A Uncharacterized protein; NYSGXRC, PSI-2, structural genomics; 1.42A {Listeria monocytogenes} PDB: 3bqt_A
Probab=15.60 E-value=1e+02 Score=19.56 Aligned_cols=22 Identities=9% Similarity=-0.103 Sum_probs=18.8
Q ss_pred ccccccChHHHHHHHHHHHHHH
Q psy10782 40 KPMAVQDKKNESHYVNNYNYLA 61 (105)
Q Consensus 40 kPiga~~~~r~~~~~~~y~~l~ 61 (105)
+|...++++|.+.+++.|+.++
T Consensus 65 ~~w~~l~~~~K~~L~~~~~~lk 86 (93)
T 3mab_A 65 IRWHGLDEAKKIELKKFHQSLE 86 (93)
T ss_dssp SCGGGSCHHHHHHHHHHHHHHC
T ss_pred CcHHHCCHHHHHHHHHHHHHhh
Confidence 5677889999999999999764
No 5
>3uky_C Nuclear CAP-binding protein complex subunit 1; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding; 2.35A {Saccharomyces cerevisiae}
Probab=15.07 E-value=53 Score=17.22 Aligned_cols=15 Identities=13% Similarity=0.481 Sum_probs=11.2
Q ss_pred cCCCCCccccccCcc
Q psy10782 27 LDLTDPKSFRNLKKP 41 (105)
Q Consensus 27 ldl~~~~~~RDLskP 41 (105)
-|+++...|||+.--
T Consensus 10 ~dfd~ddgYrDfrPR 24 (32)
T 3uky_C 10 GDFDEDENYRDFRPR 24 (32)
T ss_pred ccCcccccccccccc
Confidence 467777899998743
No 6
>1mli_A Muconolactone isomerase; intramolecular oxidoreductase; 3.30A {Pseudomonas putida} SCOP: d.58.4.1
Probab=14.74 E-value=39 Score=22.01 Aligned_cols=10 Identities=50% Similarity=1.251 Sum_probs=8.7
Q ss_pred CCCCCccceE
Q psy10782 9 LMQYPVLPFI 18 (105)
Q Consensus 9 lsqYPVFPWV 18 (105)
|++-|+|||.
T Consensus 68 L~~LPLfpym 77 (96)
T 1mli_A 68 LMQLPLFPYM 77 (96)
T ss_pred HHhCCCCceE
Confidence 5788999998
No 7
>3p8c_A Cytoplasmic FMR1-interacting protein 1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=14.60 E-value=17 Score=33.43 Aligned_cols=15 Identities=40% Similarity=0.948 Sum_probs=11.7
Q ss_pred CCCCCc---cceEeccCC
Q psy10782 9 LMQYPV---LPFILSDYK 23 (105)
Q Consensus 9 lsqYPV---FPWVl~dy~ 23 (105)
.-|+|| +||||.||-
T Consensus 635 ~iQFPIe~SLPWILtdhi 652 (1253)
T 3p8c_A 635 RIQFPIEMSMPWILTDHI 652 (1253)
T ss_dssp CSSCCGGGCHHHHHHHHH
T ss_pred eEEeccccCchHHHHHHH
Confidence 458888 888888873
No 8
>4gfq_A Ribosome-recycling factor; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.65A {Bacillus anthracis}
Probab=9.49 E-value=3e+02 Score=19.99 Aligned_cols=36 Identities=11% Similarity=0.111 Sum_probs=24.6
Q ss_pred cCCCCCccccccCccccccChHHHHHHHHHHHHHHH
Q psy10782 27 LDLTDPKSFRNLKKPMAVQDKKNESHYVNNYNYLAR 62 (105)
Q Consensus 27 ldl~~~~~~RDLskPiga~~~~r~~~~~~~y~~l~~ 62 (105)
|.|+-...=.-++.||-.+++||.+.+.+.-+...+
T Consensus 111 LglnP~~dG~~Iri~iP~LTeErRkelvK~ak~~~E 146 (209)
T 4gfq_A 111 LGLNPSNDGTVIRIAFPALTEERRRDLVKVVKKYAE 146 (209)
T ss_dssp SSCCCEECSSCEEEECCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcCCCceeeeCCCccHHHHHHHHHHHHHHHH
Confidence 444433333458899999999999988876655433
No 9
>3nqb_A Adenine deaminase 2; PSI-II, structural genomics, protein structure initiative, N SGX research center for structural genomics, nysgxrc; 2.21A {Agrobacterium tumefaciens} PDB: 3t81_A 3t8l_A
Probab=8.63 E-value=2.3e+02 Score=23.14 Aligned_cols=45 Identities=18% Similarity=0.190 Sum_probs=31.5
Q ss_pred CccccccCcccc-ccChHHHHHHHHHHHHHHHHhhhcCCCCCCCCccc
Q psy10782 32 PKSFRNLKKPMA-VQDKKNESHYVNNYNYLAREMCDAVGGVNQEPYHY 78 (105)
Q Consensus 32 ~~~~RDLskPig-a~~~~r~~~~~~~y~~l~~~~~~~~~~~~~~~f~y 78 (105)
-+..-.|.+||| .++.+..+.+.+++++|.+..++... -..||+.
T Consensus 515 g~v~~~l~lpi~Glms~~~~~~v~~~~~~l~~~~~~~~~--~~~p~~~ 560 (608)
T 3nqb_A 515 GKVTAILPLPLSGLVSDAPLEEVARAFEDLREAVGKVVE--WQPPYLV 560 (608)
T ss_dssp TEEEEEEECTBTTTBCSSCHHHHHHHHHHHHHHHHHHSC--CBTTTBS
T ss_pred CEEEEEecccccccccCCCHHHHHHHHHHHHHHHHHhcc--CCChHHh
Confidence 345567899995 58988999999999998876655321 2345643
No 10
>3oc5_A Toxin coregulated pilus biosynthesis protein F; multidomain protein, immunoglobulin-like (IG-like) fold, CEL adhesion; 2.40A {Vibrio cholerae}
Probab=8.44 E-value=81 Score=24.31 Aligned_cols=13 Identities=23% Similarity=0.491 Sum_probs=9.1
Q ss_pred CCCccceEeccCCC
Q psy10782 11 QYPVLPFILSDYKS 24 (105)
Q Consensus 11 qYPVFPWVl~dy~s 24 (105)
-=|||||| .-|+.
T Consensus 184 p~eIfp~I-KiY~~ 196 (318)
T 3oc5_A 184 PNEIYPHI-KVYEG 196 (318)
T ss_dssp ECCBCCCC-CCCCT
T ss_pred chhcCcce-EEeec
Confidence 34899999 46644
Done!