RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10782
         (105 letters)



>d1t77a1 a.169.1.1 (A:2186-2489) Lipopolysaccharide-responsive and
           beige-like anchor protein LRBA {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 304

 Score =  116 bits (292), Expect = 6e-34
 Identities = 44/104 (42%), Positives = 64/104 (61%), Gaps = 8/104 (7%)

Query: 1   MAGRSYNDLMQYPVLPFILSDYKSATLDLTDPKSFRNLKKPMAVQDKKNESHYVNNYNYL 60
           +AGRSYNDL QYPV P+++++Y+S  LDLT P +FR+L KP+   + K  + +   Y   
Sbjct: 47  IAGRSYNDLNQYPVFPWVITNYESEELDLTLPTNFRDLSKPIGALNPKRAAFFAERYESW 106

Query: 61  AREMCDAVGGVNQEPYHYGSHYSNSGTVLHFLVRIPPFTSMFLN 104
             +            +HYG+HYS +  VL +L+RI PFT+ FLN
Sbjct: 107 EDD--------QVPKFHYGTHYSTASFVLAWLLRIEPFTTYFLN 142


>d1s2xa_ a.47.3.1 (A:) Cag-Z {Helicobacter pylori [TaxId: 210]}
          Length = 180

 Score = 25.4 bits (55), Expect = 1.2
 Identities = 18/77 (23%), Positives = 32/77 (41%)

Query: 19  LSDYKSATLDLTDPKSFRNLKKPMAVQDKKNESHYVNNYNYLAREMCDAVGGVNQEPYHY 78
           + +Y ++  D  DP+ F    + + +  +KN   +   YNYL   +  +     QE    
Sbjct: 33  IQNYATSLKDSNDPQDFLRRVQELRINMQKNFISFDAYYNYLNNLVLASYNRCKQEKTFA 92

Query: 79  GSHYSNSGTVLHFLVRI 95
            S   N  T+  F+  I
Sbjct: 93  ESTIKNELTLGEFVAEI 109


>d2foka1 a.4.5.12 (A:5-143) Restriction endonuclease FokI,
          N-terminal (recognition) domain {Flavobacterium
          okeanokoites [TaxId: 244]}
          Length = 139

 Score = 24.9 bits (54), Expect = 2.0
 Identities = 8/22 (36%), Positives = 14/22 (63%)

Query: 31 DPKSFRNLKKPMAVQDKKNESH 52
          +P  F NLK+ + V D+ ++ H
Sbjct: 9  NPGKFENLKRVVQVFDRNSKVH 30


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.134    0.404 

Gapped
Lambda     K      H
   0.267   0.0393    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 395,499
Number of extensions: 15777
Number of successful extensions: 29
Number of sequences better than 10.0: 1
Number of HSP's gapped: 28
Number of HSP's successfully gapped: 8
Length of query: 105
Length of database: 2,407,596
Length adjustment: 65
Effective length of query: 40
Effective length of database: 1,515,146
Effective search space: 60605840
Effective search space used: 60605840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.8 bits)