BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy10784
         (69 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2ZXC|A Chain A, Seramidase Complexed With C2
 pdb|2ZXC|B Chain B, Seramidase Complexed With C2
 pdb|2ZWS|A Chain A, Crystal Structure Analysis Of Neutral Ceramidase From
           Pseudomonas Aeruginosa
          Length = 646

 Score = 63.5 bits (153), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 31/61 (50%), Positives = 42/61 (68%)

Query: 4   LFDLNSLGFVPDTFNAMVRGIALSISRAHNNLQEGRLFVSKGELLDANINRSPTAYLQNP 63
           +++L+ LGF   TFNA+V GI  SI RA   LQ GRLF   GEL +A+ NRS  ++L+NP
Sbjct: 110 MYNLSVLGFQEKTFNAIVDGIVRSIERAQARLQPGRLFYGSGELRNASRNRSLLSHLKNP 169

Query: 64  E 64
           +
Sbjct: 170 D 170


>pdb|3RHY|A Chain A, Crystal Structure Of The Dimethylarginine
           Dimethylaminohydrolase Adduct With
           4-Chloro-2-Hydroxymethylpyridine
 pdb|3RHY|B Chain B, Crystal Structure Of The Dimethylarginine
           Dimethylaminohydrolase Adduct With
           4-Chloro-2-Hydroxymethylpyridine
          Length = 254

 Score = 26.6 bits (57), Expect = 4.1,   Method: Composition-based stats.
 Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 7/35 (20%)

Query: 32  HNNLQEGRLFVSKGELLDANINRSPTAYLQNPEEE 66
           HNNL     FVSK E  D NI       ++ PEEE
Sbjct: 172 HNNLLAAGEFVSKPEFQDFNI-------IEIPEEE 199


>pdb|3BPB|A Chain A, Crystal Structure Of The Dimethylarginine
           Dimethylaminohydrolase H162g Adduct With S-Methyl-L-
           Thiocitrulline
 pdb|3BPB|B Chain B, Crystal Structure Of The Dimethylarginine
           Dimethylaminohydrolase H162g Adduct With S-Methyl-L-
           Thiocitrulline
          Length = 254

 Score = 26.6 bits (57), Expect = 4.1,   Method: Composition-based stats.
 Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 7/35 (20%)

Query: 32  HNNLQEGRLFVSKGELLDANINRSPTAYLQNPEEE 66
           HNNL     FVSK E  D NI       ++ PEEE
Sbjct: 172 HNNLLAAGEFVSKPEFQDFNI-------IEIPEEE 199


>pdb|1H70|A Chain A, Ddah From Pseudomonas Aeruginosa. C249s Mutant Complexed
           With Citrulline
          Length = 255

 Score = 26.2 bits (56), Expect = 4.6,   Method: Composition-based stats.
 Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 7/35 (20%)

Query: 32  HNNLQEGRLFVSKGELLDANINRSPTAYLQNPEEE 66
           HNNL     FVSK E  D NI       ++ PEEE
Sbjct: 173 HNNLLAAGEFVSKPEFQDFNI-------IEIPEEE 200


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.137    0.387 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,888,215
Number of Sequences: 62578
Number of extensions: 53919
Number of successful extensions: 94
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 93
Number of HSP's gapped (non-prelim): 4
length of query: 69
length of database: 14,973,337
effective HSP length: 39
effective length of query: 30
effective length of database: 12,532,795
effective search space: 375983850
effective search space used: 375983850
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)