BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10784
(69 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q29C43|NCASE_DROPS Neutral ceramidase OS=Drosophila pseudoobscura pseudoobscura
GN=CDase PE=3 SV=1
Length = 704
Score = 88.6 bits (218), Expect = 1e-17, Method: Composition-based stats.
Identities = 39/69 (56%), Positives = 53/69 (76%)
Query: 1 MDFLFDLNSLGFVPDTFNAMVRGIALSISRAHNNLQEGRLFVSKGELLDANINRSPTAYL 60
M L+D++ LGFVP TF M +G+ L I RA +NL +GR+F+SK +L+ NINRSPT+YL
Sbjct: 126 MHLLYDISILGFVPQTFEVMAQGLYLCIKRATDNLVDGRIFLSKTTVLNVNINRSPTSYL 185
Query: 61 QNPEEERMR 69
+NPEEER +
Sbjct: 186 RNPEEERAQ 194
>sp|Q0JL46|NCASE_ORYSJ Neutral ceramidase OS=Oryza sativa subsp. japonica GN=Os01g0624000
PE=1 SV=1
Length = 785
Score = 82.4 bits (202), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 37/66 (56%), Positives = 51/66 (77%)
Query: 4 LFDLNSLGFVPDTFNAMVRGIALSISRAHNNLQEGRLFVSKGELLDANINRSPTAYLQNP 63
++ + SLGFV +F+ +V GI SI AHNNL+ G++FV+KG+LLDA +NRSP+AYL NP
Sbjct: 145 VYIVTSLGFVRQSFDVIVDGIEQSIVEAHNNLRPGKIFVNKGDLLDAGVNRSPSAYLNNP 204
Query: 64 EEERMR 69
EER +
Sbjct: 205 AEERSK 210
>sp|Q9VA70|NCASE_DROME Neutral ceramidase OS=Drosophila melanogaster GN=CDase PE=1 SV=1
Length = 704
Score = 82.0 bits (201), Expect = 9e-16, Method: Composition-based stats.
Identities = 36/69 (52%), Positives = 51/69 (73%)
Query: 1 MDFLFDLNSLGFVPDTFNAMVRGIALSISRAHNNLQEGRLFVSKGELLDANINRSPTAYL 60
M L+D++ LGFVP TF M +G+ L I RA +NL +GR+ +SK +L+ NINRSP++YL
Sbjct: 126 MHLLYDISILGFVPQTFEVMAQGLYLCIKRATDNLVDGRILLSKTTVLNVNINRSPSSYL 185
Query: 61 QNPEEERMR 69
+NP EER +
Sbjct: 186 RNPAEERAQ 194
>sp|Q5W7F1|ASAH2_DANRE Neutral ceramidase OS=Danio rerio GN=asah2 PE=1 SV=1
Length = 743
Score = 76.6 bits (187), Expect = 4e-14, Method: Composition-based stats.
Identities = 33/66 (50%), Positives = 47/66 (71%)
Query: 4 LFDLNSLGFVPDTFNAMVRGIALSISRAHNNLQEGRLFVSKGELLDANINRSPTAYLQNP 63
LF + S G++ + A+V GI SI AH NL+ GR+F++KG++ D+N NRSP +Y+ NP
Sbjct: 164 LFMITSKGYIKPSIQAIVSGIVKSIDIAHRNLRPGRIFINKGQVADSNFNRSPHSYMNNP 223
Query: 64 EEERMR 69
EEER R
Sbjct: 224 EEERNR 229
>sp|Q304B9|NCASE_ARATH Neutral ceramidase OS=Arabidopsis thaliana GN=At2g38010 PE=2 SV=1
Length = 757
Score = 73.2 bits (178), Expect = 4e-13, Method: Composition-based stats.
Identities = 33/63 (52%), Positives = 46/63 (73%)
Query: 7 LNSLGFVPDTFNAMVRGIALSISRAHNNLQEGRLFVSKGELLDANINRSPTAYLQNPEEE 66
+ SLGFV +F+ +V GI SI +AH +L+ G FV+KG+LLDA +NRSP++YL NP E
Sbjct: 133 VTSLGFVRQSFDVVVNGIEQSIVQAHESLRPGSAFVNKGDLLDAGVNRSPSSYLNNPAAE 192
Query: 67 RMR 69
R +
Sbjct: 193 RSK 195
>sp|P0C7U2|ASA2C_HUMAN Putative neutral ceramidase C OS=Homo sapiens GN=ASAH2C PE=2 SV=1
Length = 622
Score = 68.9 bits (167), Expect = 7e-12, Method: Composition-based stats.
Identities = 32/66 (48%), Positives = 43/66 (65%)
Query: 4 LFDLNSLGFVPDTFNAMVRGIALSISRAHNNLQEGRLFVSKGELLDANINRSPTAYLQNP 63
+F + S GF TF MV GI SI AH N++ G++F++KG + INRSP +YLQNP
Sbjct: 49 VFVIASEGFSNQTFQHMVTGILKSIDIAHTNMKPGKIFINKGNVDGVQINRSPYSYLQNP 108
Query: 64 EEERMR 69
+ ER R
Sbjct: 109 QSERAR 114
>sp|Q9NR71|ASAH2_HUMAN Neutral ceramidase OS=Homo sapiens GN=ASAH2 PE=1 SV=2
Length = 780
Score = 68.9 bits (167), Expect = 9e-12, Method: Composition-based stats.
Identities = 32/66 (48%), Positives = 43/66 (65%)
Query: 4 LFDLNSLGFVPDTFNAMVRGIALSISRAHNNLQEGRLFVSKGELLDANINRSPTAYLQNP 63
+F + S GF TF MV GI SI AH N++ G++F++KG + INRSP +YLQNP
Sbjct: 207 VFVIASEGFSNQTFQHMVTGILKSIDIAHTNMKPGKIFINKGNVDGVQINRSPYSYLQNP 266
Query: 64 EEERMR 69
+ ER R
Sbjct: 267 QSERAR 272
>sp|Q9JHE3|ASAH2_MOUSE Neutral ceramidase OS=Mus musculus GN=Asah2 PE=1 SV=1
Length = 756
Score = 68.2 bits (165), Expect = 1e-11, Method: Composition-based stats.
Identities = 32/66 (48%), Positives = 44/66 (66%)
Query: 4 LFDLNSLGFVPDTFNAMVRGIALSISRAHNNLQEGRLFVSKGELLDANINRSPTAYLQNP 63
L+ L S GF TF +V GI SI AH NL+ G++F++KG + + INRSP++YL NP
Sbjct: 183 LYILASEGFSNRTFQYIVSGIMKSIDIAHTNLKPGKIFINKGNVANVQINRSPSSYLLNP 242
Query: 64 EEERMR 69
+ ER R
Sbjct: 243 QSERAR 248
>sp|Q91XT9|ASAH2_RAT Neutral ceramidase OS=Rattus norvegicus GN=Asah2 PE=1 SV=1
Length = 761
Score = 67.8 bits (164), Expect = 2e-11, Method: Composition-based stats.
Identities = 32/66 (48%), Positives = 43/66 (65%)
Query: 4 LFDLNSLGFVPDTFNAMVRGIALSISRAHNNLQEGRLFVSKGELLDANINRSPTAYLQNP 63
L+ L S GF TF +V GI SI AH NL+ G++ ++KG + + INRSP++YLQNP
Sbjct: 188 LYILASEGFSNRTFQYIVSGIVKSIDIAHTNLKPGKVLINKGNVANVQINRSPSSYLQNP 247
Query: 64 EEERMR 69
ER R
Sbjct: 248 PSERAR 253
>sp|Q54BK2|NCSEA_DICDI Neutral ceramidase A OS=Dictyostelium discoideum GN=dcd2A PE=1 SV=1
Length = 714
Score = 65.9 bits (159), Expect = 7e-11, Method: Composition-based stats.
Identities = 28/64 (43%), Positives = 42/64 (65%)
Query: 4 LFDLNSLGFVPDTFNAMVRGIALSISRAHNNLQEGRLFVSKGELLDANINRSPTAYLQNP 63
L+ + +LGF F+ + GI +I +AH ++Q R+ +GEL ++NINRSP AY NP
Sbjct: 145 LYGITALGFYKKNFDTICDGIVQAIVKAHKSVQPARMLTQQGELWNSNINRSPYAYDNNP 204
Query: 64 EEER 67
EEE+
Sbjct: 205 EEEK 208
>sp|Q55G11|NCSEB_DICDI Neutral ceramidase B OS=Dictyostelium discoideum GN=dcd2B PE=3 SV=1
Length = 718
Score = 65.1 bits (157), Expect = 1e-10, Method: Composition-based stats.
Identities = 29/64 (45%), Positives = 40/64 (62%)
Query: 4 LFDLNSLGFVPDTFNAMVRGIALSISRAHNNLQEGRLFVSKGELLDANINRSPTAYLQNP 63
L+ + SLGF F+ + GI +I +AH ++Q +F GEL + NINRSP AY NP
Sbjct: 151 LYGITSLGFYKKNFDTICNGIVQAIVKAHKSVQPANMFTETGELWNTNINRSPFAYDNNP 210
Query: 64 EEER 67
EEE+
Sbjct: 211 EEEK 214
>sp|Q9I596|NCASE_PSEAE Neutral ceramidase OS=Pseudomonas aeruginosa (strain ATCC 15692 /
PAO1 / 1C / PRS 101 / LMG 12228) GN=PA0845 PE=1 SV=1
Length = 670
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 32/61 (52%), Positives = 42/61 (68%)
Query: 4 LFDLNSLGFVPDTFNAMVRGIALSISRAHNNLQEGRLFVSKGELLDANINRSPTAYLQNP 63
+++L+ LGF TFNA+V GI SI RA LQ GRLF GEL +AN NRS ++L+NP
Sbjct: 134 MYNLSVLGFQEKTFNAIVDGIVRSIERAQARLQPGRLFYGSGELRNANRNRSLLSHLKNP 193
Query: 64 E 64
+
Sbjct: 194 D 194
>sp|O06769|NCASE_MYCTU Neutral ceramidase OS=Mycobacterium tuberculosis GN=Rv0669c PE=1
SV=1
Length = 637
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 42/65 (64%)
Query: 3 FLFDLNSLGFVPDTFNAMVRGIALSISRAHNNLQEGRLFVSKGELLDANINRSPTAYLQN 62
L++L + GF P TF A+V GI S+ AH ++ + +S GEL A+INRSP+A+ +N
Sbjct: 108 LLYNLTTSGFRPATFAAIVDGIVESVEHAHADVAPAEVSLSHGELYGASINRSPSAFDRN 167
Query: 63 PEEER 67
P ++
Sbjct: 168 PPADK 172
>sp|Q53245|GLND_RHITR [Protein-PII] uridylyltransferase OS=Rhizobium tropici GN=glnD PE=3
SV=2
Length = 948
Score = 29.6 bits (65), Expect = 5.9, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 3 FLFDLNSLGFVPDTFNAMVRGIALSISRAHNNLQEGRLFVS 43
F+ D+N L F PD + R ++L + N + RLF+S
Sbjct: 404 FVADINGLEFHPDALKRVTRSLSLIDNDLRENEEANRLFLS 444
>sp|Q5R7R6|COG4_PONAB Conserved oligomeric Golgi complex subunit 4 OS=Pongo abelii
GN=COG4 PE=2 SV=1
Length = 785
Score = 28.9 bits (63), Expect = 8.9, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 2 DFLFDLNSLGFVPDTFNAMVRGIALSISRAHNNLQEGRLFVSKG 45
D L + +GF TF + RG+ +++ H++LQ+G+ F +KG
Sbjct: 491 DVLCNKLRMGFPATTFQDIQRGVTSAVNIMHSSLQQGK-FDTKG 533
>sp|Q9H9E3|COG4_HUMAN Conserved oligomeric Golgi complex subunit 4 OS=Homo sapiens
GN=COG4 PE=1 SV=3
Length = 785
Score = 28.9 bits (63), Expect = 8.9, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 2 DFLFDLNSLGFVPDTFNAMVRGIALSISRAHNNLQEGRLFVSKG 45
D L + +GF TF + RG+ +++ H++LQ+G+ F +KG
Sbjct: 491 DVLCNKLRMGFPATTFQDIQRGVTSAVNIMHSSLQQGK-FDTKG 533
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.137 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,158,118
Number of Sequences: 539616
Number of extensions: 700494
Number of successful extensions: 1413
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1398
Number of HSP's gapped (non-prelim): 17
length of query: 69
length of database: 191,569,459
effective HSP length: 41
effective length of query: 28
effective length of database: 169,445,203
effective search space: 4744465684
effective search space used: 4744465684
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)